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2020 – today
- 2024
[j18]Eimo Martens, Hans-Ulrich Haase, Giulio Mastella, Andreas Henkel, Christoph Spinner, Franziska Hahn, Congyu Zou, Augusto Fava-Sanches
, Julia Allescher, Daniel Heid, Elena Strauss, Melanie-Maria Maier, Mark Lachmann, Georg Schmidt, Dominik Westphal, Tobias Haufe, David Federle, Daniel Rueckert, Martin Boeker, Matthias Becker, Karl-Ludwig Laugwitz, Alexander Steger, Alexander Müller:
Smart hospital: achieving interoperability and raw data collection from medical devices in clinical routine. Frontiers Digit. Health 6 (2024)- [c42]Christina Lohr, Franz Matthies, Jakob Faller, Luise Modersohn, Andrea Riedel, Udo Hahn, Rebekka Kiser, Martin Boeker, Frank A. Meineke:
De-Identifying GRASCCO - A Pilot Study for the De-Identification of the German Medical Text Project (GeMTeX) Corpus. GMDS 2024: 171-179 - [i2]Jacqueline Lammert, Nicole Pfarr, Leonid Kuligin, Sonja Mathes, Tobias Dreyer, Luise Modersohn, Patrick Metzger, Dyke Ferber, Jakob Nikolas Kather, Daniel Truhn, Lisa Christine Adams, Keno K. Bressem, Sebastian Lange, Kristina Schwamborn, Martin Boeker, Marion Kiechle, Ulrich A. Schatz, Holger Bronger, Maximilian Tschochohei:
Large Language Models-Enabled Digital Twins for Precision Medicine in Rare Gynecological Tumors. CoRR abs/2409.00544 (2024) - 2023
- [j17]Caroline Stellmach, Julian Sass, Bernd Auber, Martin Boeker, Thomas F. Wienker, Andrew J. Heidel, Manuela Benary, Simon Schumacher, Stephan Ossowski, Frederick Klauschen, Yvonne Möller, Rita Schmutzler, Arsenij Ustjanzew, Patrick Werner, Aurelie Tomczak, Thimo Hölter, Sylvia Thun:
Creation of a structured molecular genomics report for Germany as a local adaption of HL7's Genomic Reporting Implementation Guide. J. Am. Medical Informatics Assoc. 30(6): 1179-1189 (2023) - [j16]Gregor Lichtner, Brian S. Alper, Carlo Jurth, Claudia Spies, Martin Boeker, Joerg J. Meerpohl, Falk von Dincklage:
Representation of evidence-based clinical practice guideline recommendations on FHIR. J. Biomed. Informatics 139: 104305 (2023) - [c41]Raphael Scheible, David Alkier, Justus Wendroth, Julian Mayer, Martin Boeker:
FHIR DataProvider for ReactAdmin: Leveraging User Interface Creation for Medical Web Applications. ICIMTH 2023: 110-114 - [c40]Dagmar Krefting, Nico T. Mutters, Rüdiger Pryss, Martin Sedlmayr, Martin Boeker, Christoph Dieterich, Carolin Koll, Martina Mueller, Anna Slagman, Dagmar Waltemath, Antje Wulff, Sven Zenker:
Herding Cats in Pandemic Times - Towards Technological and Organizational Convergence of Heterogeneous Solutions for Investigating and Mastering the Pandemic in University Medical Centers. MedInfo 2023: 1271-1275 - [c39]Christian Draeger, Erik Tute, Carsten Oliver Schmidt, Dagmar Waltemath, Martin Boeker, Alfred Winter, Matthias Löbe:
Identifying Relevant FHIR Elements for Data Quality Assessment in the German Core Data Set. MIE 2023: 272-276 - [c38]Frank A. Meineke, Luise Modersohn, Markus Loeffler, Martin Boeker:
Announcement of the German Medical Text Corpus Project (GeMTeX). MIE 2023: 835-836 - 2022
- [c37]Philip Strecker, Martin Boeker, Simon Buechner, Raphael Scheible:
Usability Evaluation of a Modern Multilingual MeSH Browser. ICIMTH 2022: 37-40 - [c36]Stefan Schulz, Martin Boeker, Andrea Prunotto:
Validation of Multiple Path Translation for SNOMED CT Localisation. MIE 2022: 961-962 - 2021
- [j15]Jeffrey G. Klann, Hossein Estiri, Griffin M. Weber, Bertrand Moal, Paul Avillach, Chuan Hong, Amelia L. M. Tan, Brett K. Beaulieu-Jones, Victor M. Castro, Thomas Maulhardt, Alon Geva, Alberto Malovini, Andrew M. South, Shyam Visweswaran, Michele Morris, Malarkodi J. Samayamuthu, Gilbert S. Omenn, Kee Yuan Ngiam, Kenneth D. Mandl, Martin Boeker, Karen L. Olson, Danielle L. Mowery, Robert W. Follett, David A. Hanauer, Riccardo Bellazzi, Jason H. Moore, Ne-Hooi Will Loh, Douglas S. Bell, Kavishwar B. Wagholikar, Luca Chiovato, Valentina Tibollo, Siegbert Rieg, Anthony L. L. J. Li, Vianney Jouhet, Emily Schriver, Zongqi Xia, Meghan Hutch, Yuan Luo, Isaac S. Kohane, Gabriel A. Brat, Shawn N. Murphy:
Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. J. Am. Medical Informatics Assoc. 28(7): 1411-1420 (2021) - [c35]Raphael Scheible, Philip Strecker, Suhail Yazijy, Fabian Thomczyk, Ruslan Talpa, Andrea Puhl, Martin Boeker:
A Multilingual Browser Platform for Medical Subject Headings. ICIMTH 2021: 384-387 - [c34]Raphael Scheible, Deniz Çaliskan, Patrick Fischer, Fabian Thomczyk, Susanne Zabka, Henning Schneider, Martin Boeker, Stefan Schulz, Hans-Ulrich Prokosch, Christian Gulden:
AHD2FHIR: A Tool for Mapping of Natural Language Annotations to Fast Healthcare Interoperability Resources - A Technical Case Report. MedInfo 2021: 32-36 - [c33]Albert Vass, Ines Reinecke, Martin Boeker, Hans-Ulrich Prokosch, Christian Gulden:
Availability of Structured Data Elements in Electronic Health Records for Supporting Patient Recruitment in Clinical Trials. MedInfo 2021: 130-134 - [c32]Andrea Prunotto, Stefan Schulz, Martin Boeker:
Automatic Generation of German Translation Candidates for SNOMED CT Textual Descriptions. MIE 2021: 178-182 - 2020
- [j14]Susanne Zabka, Stefan Schulz, Oliver Brunner, Martin Boeker:
How versioning of terminology systems can be supported by ontological models - a case study on TNM tumor classification. Appl. Ontology 15(1): 41-60 (2020) - [j13]Jannik Schaaf, Hans-Ulrich Prokosch, Martin Boeker, Johanna Schaefer, Jessica Vasseur, Holger Storf, Martin Sedlmayr:
Interviews with experts in rare diseases for the development of clinical decision support system software - a qualitative study. BMC Medical Informatics Decis. Mak. 20(1): 230 (2020) - [j12]Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James J. Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L'Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutiérrez-Sacristán, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie G. Kirchoff, Jean B. Craig, Jihad S. Obeid, Vianney Jouhet, Romain Griffier, Sébastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans-Ulrich Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schriver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne-Sophie Jannot, Stéphane Bréant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Mélodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Esteve, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gaël Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew M. South, Tianxi Cai, Isaac S. Kohane:
International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. npj Digit. Medicine 3 (2020) - [c31]Jannik Schaaf, Martin Sedlmayr, Hans-Ulrich Prokosch, Thomas Ganslandt, Carmen Schade-Brittinger, Michael von Wagner, Dennis Kadioglu, Katharina Schubert, Min Ae Lee-Kirsch, Bernhard K. Kraemer, Beate Winner, Tobias Mueller, Juergen R. Schaefer, Thomas O. F. Wagner, Leena Bruckner-Tuderman, Oliver Tuescher, Martin Boeker, Holger Storf:
The Status Quo of Rare Diseases Centres for the Development of a Clinical Decision Support System - A Cross-Sectional Study. dHealth 2020: 176-183 - [c30]Jannik Schaaf, Martin Sedlmayr, Hans-Ulrich Prokosch, Niels Tegtbauer, Dennis Kadioglu, Johanna Schaefer, Martin Boeker, Holger Storf:
Visualization of Similar Patients in a Clinical Decision Support System for Rare Diseases - A Focus Group Study. GMDS 2020: 49-57 - [c29]Julian Sass, Susanne Zabka, Andrea Essenwanger, Josef Schepers, Martin Boeker, Sylvia Thun:
Fast Healthcare Interoperability Resources (FHIR®) Representation of Medication Data Derived from German Procedure Classification Codes (OPS) Using Identification of Medicinal Products (IDMP) Compliant Terminology. GMDS 2020: 231-236 - [c28]Carolin E. M. Jakob, Melanie Stecher, Sandra Fuhrmann, Sebastian Wingen-Heimann, Stephanie Heinen, Gabriele Anton, Michael Behnke, Uta Behrends, Martin Boeker, Stefanie Castell, Hans Demski, Maximilian Diefenbach, Jane C. Falgenhauer, Moritz Fritzenwanker, Petra Gastmeier, Markus Gerhard, Stephan Glöckner, Mira Golubovic, Barbara Gunsenheimer Bartmeyer, Josef Ingenerf, Rolf Kaiser, Marie-Luise Körner, Wibke Loag, Alice Mchardy, Ernst Molitor, Ulrich Nübel, Michael Pritsch, Michael Ramharter, Sigbert R. Rieg, Jan Rupp, Daniela Schindler, Dominik Schwudke, Christoph Spinner, Benjamin Stottmeier, Maria J. G. T. Vehreschild, Matthias Willmann, Jörg Janne Vehreschild:
Needs for an Integration of Specific Data Sources and Items - First Insights of a National Survey Within the German Center for Infection Research. GMDS 2020: 237-244 - [i1]Raphael Scheible, Fabian Thomczyk, Patric Tippmann, Victor Jaravine, Martin Boeker:
GottBERT: a pure German Language Model. CoRR abs/2012.02110 (2020)
2010 – 2019
- 2019
- [c27]Thomas Ganslandt, Jannik Schaaf, Josef Schepers, Holger Storf, Felix Balzer, Silke Haferkamp, Robert Lodahl, Fabian Prasser, Ulrich Sax, Holger Stenzhorn, Hans-Ulrich Prokosch, Martin Boeker:
Experiences from the National Demonstrator Study within the German Medical Informatics Initiative. AMIA 2019 - [c26]Hanna Hasselblatt, Johanna Andrae, Adrian Tassoni, Kai Fitzer, Thomas Bahls, Hans-Ulrich Prokosch, Martin Boeker:
Establishing an Interoperable Clinical Trial Information System Within MIRACUM. EFMI-STC 2019: 216-220 - [c25]Johannes Herrmann, Susanne Zabka, Martin Boeker, Stefan Schulz:
Ontology Patterns for Tubular or Spherical Layered Structures. A Case Study from Oncology. JOWO 2019 - [c24]Susanne Zabka, Danny Ammon, Thomas Ganslandt, Jan E. Gewehr, Christian Haverkamp, Saskia Kiefer, Heinrich Lautenbacher, Matthias Löbe, Sylvia Thun, Martin Boeker:
Towards a Medication Core Data Set for the Medical Informatics Initiative (MII): Initial Mapping Experience between the German Procedure Classification (OPS) and the Identification of Medicinal Products (IDMP). JOWO 2019 - [c23]Jannik Schaaf, Martin Boeker, Thomas Ganslandt, Christian Haverkamp, Tim Hermann, Dennis Kadioglu, Hans-Ulrich Prokosch, Thomas O. F. Wagner, Michael von Wagner, Johanna Schaefer, Martin Sedlmayr, Holger Storf:
Finding the Needle in the Hay Stack: An Open Architecture to Support Diagnosis of Undiagnosed Patients. MedInfo 2019: 1580-1581 - 2018
- [c22]Marc Hinderer, Melanie Boerries, Martin Boeker, Michael Neumaier, Frank-Peter Loubal, Till Acker, Manfred Brunner, Hans-Ulrich Prokosch, Jan Christoph:
Implementing Pharmacogenomic Clinical Decision Support into German Hospitals. MIE 2018: 870-874 - [e2]Stefano Borgo, Oliver Kutz, Frank Loebe, Fabian Neuhaus, Kemo Adrian, Mihailo Antovic, Valerio Basile, Martin Boeker, Diego Calvanese, Tommaso Caselli, Giorgio Colombo, Roberto Confalonieri, Laura Daniele, Jérôme Euzenat, Antony Galton, Dagmar Gromann, Maria M. Hedblom, Heinrich Herre, Inge Hinterwaldner, Andrea Janes, Ludger Jansen, Kris Krois, Antonio Lieto, Claudio Masolo, Rafael Peñaloza, Daniele Porello, Daniele Paolo Radicioni, Emilio M. Sanfilippo, Daniel Schober, Rossella Stufano, Amanda Vizedom:
Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, Bozen-Bolzano, Italy, September 21-23, 2017. CEUR Workshop Proceedings 2050, CEUR-WS.org 2018 [contents] - 2017
- [j11]Angel Esteban-Gil, Jesualdo Tomás Fernández-Breis, Martin Boeker:
Analysis and visualization of disease courses in a semantically-enabled cancer registry. J. Biomed. Semant. 8(1): 46:1-46:16 (2017) - [j10]Marc Hinderer, Martin Boeker, Sebastian A. Wagner, Martin Lablans, Stephanie Newe, Jan L. Hülsemann, Michael Neumaier, Harald Binder, Harald Renz, Till Acker, Hans-Ulrich Prokosch, Martin Sedlmayr:
Integrating clinical decision support systems for pharmacogenomic testing into clinical routine - a scoping review of designs of user-system interactions in recent system development. BMC Medical Informatics Decis. Mak. 17(1): 81:1-81:14 (2017) - [c21]Stefan Schulz, Martin Boeker, José Antonio Vera Ramos, Ludger Jansen:
Pizza & Wine: The Need for Educational Tools for Foundational Ontologies. JOWO 2017 - [c20]Susanne Zabka, Stefan Schulz, Oliver Brunner, Martin Boeker:
TNM-O: A Modular Ontological Approach for the Representation of Tumour Entities across TNM Versions. JOWO 2017 - 2016
- [j9]Martin Boeker, Fábio França, Peter Bronsert, Stefan Schulz:
TNM-O: ontology support for staging of malignant tumours. J. Biomed. Semant. 7: 64:1-64:11 (2016) - [e1]Frank Loebe, Martin Boeker, Heinrich Herre, Ludger Jansen, Daniel Schober:
Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, ODLS 2016, organized by the GI Workgroup Ontologies in Biomedicine and Life Sciences (OBML), Halle (Saale), Germany, September 29-30, 2016. CEUR Workshop Proceedings 1692, CEUR-WS.org 2016 [contents] - 2015
- [c19]Martin Boeker, Fábio França, Peter Bronsert, Stefan Schulz:
TNM-O an ontology for the Tumor-Node-Metastasis classification of malignant tumors: a study on rectal cancer. ICBO 2015 - [c18]Fábio França, Stefan Schulz, Peter Bronsert, Paulo Novais, Martin Boeker:
Feasibility of an ontology driven tumor-node-metastasis classifier application: A study on colorectal cancer. INISTA 2015: 1-7 - 2014
- [j8]Michael Braun, Alexander Ulrich Brandt, Stefan Schulz, Martin Boeker:
Validating archetypes for the Multiple Sclerosis Functional Composite. BMC Medical Informatics Decis. Mak. 14: 64 (2014) - [c17]Angel Esteban-Gil, Jesualdo Tomás Fernández-Breis, Martin Boeker:
Analysis and Visualization of Disease Courses in a Semantic Enabled Cancer Registry. SWAT4LS 2014 - [c16]Daniel Schober, Rémy Choquet, Kristof Depraetere, Frank Enders, Philipp Daumke, Marie-Christine Jaulent, Douglas Teodoro, Emilie Pasche, Christian Lovis, Martin Boeker:
DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance. SWAT4LS 2014 - 2013
- [c15]Martin Boeker, Niels Grewe, Johannes Röhl, Daniel Schober, Stefan Schulz, Djamila Seddig-Raufie, Ludger Jansen:
Measuring the Effect of a Guideline-based Training on Ontology Design with a Competency Questions based Evaluation Approach. GI-Jahrestagung 2013: 1783-1795 - [c14]Stefan Schulz, Martin Boeker:
BioTopLite: An Upper Level Ontology for the Life SciencesEvolution, Design and Application. GI-Jahrestagung 2013: 1889-1899 - [c13]Stefan Schulz, Johannes Bernhardt-Melischnig, Markus Kreuzthaler, Philipp Daumke, Martin Boeker:
Machine vs. Human Translation of SNOMED CT Terms. MedInfo 2013: 581-584 - [c12]Martin Boeker, Werner Vach, Edith Motschall:
Time-dependent Migration of Citations Through PubMed and OvidSP Subsets: a Study on a Series of Simultaneous PubMed and OvidSP Searches. MedInfo 2013: 1196 - 2012
- [j7]Djamila Seddig-Raufie, Ludger Jansen, Daniel Schober, Martin Boeker, Niels Grewe, Stefan Schulz:
Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology. J. Biomed. Semant. 3(S-2): S2 (2012) - [j6]Daniel Schober, Ilinca Tudose, Vojtech Svátek, Martin Boeker:
OntoCheck: verifying ontology naming conventions and metadata completeness in Protégé 4. J. Biomed. Semant. 3(S-2): S4 (2012) - [j5]Pablo López-García, Martin Boeker, Arantza Illarramendi, Stefan Schulz:
Usability-driven pruning of large ontologies: the case of SNOMED CT. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [c11]Martin Boeker, Daniel Schober, Djamila Raufie, Niels Grewe, Johannes Röhl, Ludger Jansen, Stefan Schulz:
Teaching Good Biomedical Ontology Design. ICBO 2012 - [c10]Daniel Schober, Vojtech Svátek, Martin Boeker:
Checking Class Labels against Naming Conventions: First experiences with the OntoCheck Protégé plugin. ICBO 2012 - 2011
- [j4]Stefan Schulz, Kent A. Spackman, Andrew G. James, Cristian Cocos, Martin Boeker:
Scalable representations of diseases in biomedical ontologies. J. Biomed. Semant. 2(S-2): S6 (2011) - [j3]Martin Boeker, Ilinca Tudose, Janna Hastings, Daniel Schober, Stefan Schulz:
Unintended consequences of existential quantifications in biomedical ontologies. BMC Bioinform. 12: 456 (2011) - [c9]Martin Boeker, Janna Hastings, Daniel Schober, Stefan Schulz:
A T-Box Generator for Testing Scalability of OWL Mereotopological Patterns. OWLED 2011 - 2010
- [c8]Daniel Schober, Martin Boeker, Jessica Bullenkamp, Csaba Huszka, Kristof Depraetere, Douglas Teodoro, Nadia Nadah, Rémy Choquet, Christel Daniel, Stefan Schulz:
The DebugIT Core Ontology: semantic integration of antibiotics resistance patterns. MedInfo 2010: 1060-1064 - [c7]Daniel Schober, Martin Boeker, Stefan Schulz, Ilinca Tudose:
Developing DCO: The DebugIT core ontology for antibiotics resistence modelling. Semantic Mining in Biomedicine 2010
2000 – 2009
- 2009
- [j2]Stefan Schulz, Boontawee Suntisrivaraporn, Franz Baader, Martin Boeker:
SNOMED reaching its adolescence: Ontologists' and logicians' health check. Int. J. Medical Informatics 78(Supplement-1): S86-S94 (2009) - 2008
- [j1]Holger Stenzhorn, Stefan Schulz, Martin Boeker, Barry Smith:
Adapting Clinical Ontologies in Real-World Environments. J. Univers. Comput. Sci. 14(22): 3767-3780 (2008) - [c6]Stefan Schulz, Holger Stenzhorn, Martin Boeker:
The ontology of biological taxa. ISMB 2008: 313-321 - [c5]Martin Boeker, Stefan Schulz, Thilo Schuler:
Post-Coordination in the Mapping of Interface Terms of a Clinical Wound Documentation System to SNOMED CT. KR-MED 2008 - [c4]Stefan Schulz, Martin Boeker, Holger Stenzhorn:
How Granularity Issues Concern Biomedical Ontology Integration. MIE 2008: 863-868 - 2007
- [c3]Martin Boeker, Holger Stenzhorn, Kai Kumpf, Philippe Bijlenga, Stefan Schulz, Susanne Hanser:
The @neurIST Ontology of Intracranial Aneurysms: Providing Terminological Services for an Integrated IT Infrastructure. AMIA 2007 - [c2]Thilo Schuler, Martin Boeker, Rüdiger Klar, Marcel Müller:
A Generic, Web-based Clinical Information System Architecture Using HL7 CDA: Successful Implementation in Dermatological Routine Care. MedInfo 2007: 439-443 - 2005
- [c1]Martin Boeker, Christine Müller, Rüdiger Klar, Johannes Lutterbach:
OncoCase: Interdisciplinary Case Based Teaching in Neuro-Oncology Based on the Campus Platform. AMIA 2005
Coauthor Index
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