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2020 – today
- 2025
[e4]Yuankai Huo
, Bryan A. Millis, Yuyin Zhou, Khaled Younis, Xiao Wang, Yucheng Tang:
Medical Optical Imaging and Virtual Microscopy Image Analysis - Second International Workshop, MOVI 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 10, 2024, Proceedings. Lecture Notes in Computer Science 15371, Springer 2025, ISBN 978-3-031-77785-1 [contents]- [i152]Yanfan Zhu, Isaac Lyngaas, Muralikrishnan Gopalakrishnan Meena, Mary Ellen Koran, Bradley A. Malin, Daniel Moyer, Shunxing Bao, Anuj J. Kapadia, Xiao Wang, Bennett A. Landman, Yuankai Huo:
Scale-up Unlearnable Examples Learning with High-Performance Computing. CoRR abs/2501.06080 (2025) - [i151]Yuechen Yang, Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin, Shilin Zhao, Haichun Yang, Yuankai Huo:
PySpatial: A High-Speed Whole Slide Image Pathomics Toolkit. CoRR abs/2501.06151 (2025) - [i150]Zhengyi Lu, Hao Liang, Ming Lu, Xiao Wang, Xinqiang Yan, Yuankai Huo:
Fast-RF-Shimming: Accelerate RF Shimming in 7T MRI using Deep Learning. CoRR abs/2501.12157 (2025) - [i149]Tianyuan Yao, Zhiyuan Li, Praitayini Kanakaraj, Derek B. Archer, Kurt Schilling, Lori L. Beason-Held, Susan M. Resnick, Bennett A. Landman, Yuankai Huo:
Polyhedra Encoding Transformers: Enhancing Diffusion MRI Analysis Beyond Voxel and Volumetric Embedding. CoRR abs/2501.13352 (2025) - [i148]Chongyu Qu, Ritchie Zhao, Ye Yu, Bin Liu, Tianyuan Yao, Junchao Zhu, Bennett A. Landman, Yucheng Tang, Yuankai Huo:
Post-Training Quantization for 3D Medical Image Segmentation: A Practical Study on Real Inference Engines. CoRR abs/2501.17343 (2025) - [i147]Juming Xiong, Hou Xiong, Quan Liu, Ruining Deng, Regina N. Tyree, Girish Hiremath, Yuankai Huo:
Expanding Training Data for Endoscopic Phenotyping of Eosinophilic Esophagitis. CoRR abs/2502.04199 (2025) - [i146]Juming Xiong, Muyang Li, Ruining Deng, Tianyuan Yao, Shunxing Bao, Regina N. Tyree, Girish Hiremath, Yuankai Huo:
Enhanced Feature-based Image Stitching for Endoscopic Videos in Pediatric Eosinophilic Esophagitis. CoRR abs/2502.04207 (2025) - [i145]Yitian Long, Zhongze Wu, Xiu Su, Lining Yu, Ruining Deng, Haichun Yang, Yuankai Huo:
Towards Fine-grained Renal Vasculature Segmentation: Full-Scale Hierarchical Learning with FH-Seg. CoRR abs/2502.05320 (2025) - [i144]Ruining Deng, Tianyuan Yao, Yucheng Tang, Junlin Guo, Siqi Lu, Juming Xiong, Lining Yu, Quan Huu Cap, Pengzhou Cai, Libin Lan, Ze Zhao, Adrian Galdran, Amit Kumar, Gunjan Deotale, Dev Kumar Das, Inyoung Paik, Joonho Lee, Geongyu Lee, Yujia Chen, Wangkai Li, Zhaoyang Li, Xuege Hou, Zeyuan Wu, Shengjin Wang, Maximilian Fischer, Lars Kramer, Anghong Du, Le Zhang, Maria Sanchez Sanchez, Helena Sanchez Ulloa, David Ribalta Heredia, Carlos Perez de Arenaza Garcia, Shuoyu Xu, Bingdou He, Xinping Cheng, Tao Wang, Noémie Moreau, Katarzyna Bozek, Shubham Innani, Ujjwal Baid, Kaura Solomon Kefas, Bennett A. Landman, Yu Wang, Shilin Zhao, Mengmeng Yin, Haichun Yang, Yuankai Huo:
KPIs 2024 Challenge: Advancing Glomerular Segmentation from Patch- to Slide-Level. CoRR abs/2502.07288 (2025) - [i143]Ruining Deng, Yihe Yang, David J. Pisapia, Benjamin Liechty, Junchao Zhu, Juming Xiong, Junlin Guo, Zhengyi Lu, Jiacheng Wang, Xing Yao, Runxuan Yu, Rendong Zhang, Gaurav Rudravaram, Mengmeng Yin, Pinaki Sarder, Haichun Yang, Yuankai Huo, Mert R. Sabuncu:
CASC-AI: Consensus-aware Self-corrective AI Agents for Noise Cell Segmentation. CoRR abs/2502.07302 (2025) - [i142]Junchao Zhu, Ruining Deng, Tianyuan Yao, Juming Xiong, Chongyu Qu, Junlin Guo, Siqi Lu, Yucheng Tang, Daguang Xu, Mengmeng Yin, Yu Wang, Shilin Zhao, Yaohong Wang, Haichun Yang, Yuankai Huo:
MagNet: Multi-Level Attention Graph Network for Predicting High-Resolution Spatial Transcriptomics. CoRR abs/2502.21011 (2025) - [i141]Junlin Guo, James Zimmer-Dauphinee, Jordan M. Nieusma, Siqi Lu, Quan Liu, Ruining Deng, Can Cui, Jialin Yue, Yizhe Lin, Tianyuan Yao, Juming Xiong, Junchao Zhu, Chongyu Qu, Yuechen Yang, Mitchell Wilkes, Xiao Wang, Parker VanValkenburgh, Steven A. Wernke, Yuankai Huo:
DeepAndes: A Self-Supervised Vision Foundation Model for Multi-Spectral Remote Sensing Imagery of the Andes. CoRR abs/2504.20303 (2025) - 2024
- [j37]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-scale multi-instance learning for pathological image diagnosis. Medical Image Anal. 94: 103124 (2024) - [j36]Yucheng Tang, Jie Liu, Zongwei Zhou, Xin Yu, Yuankai Huo:
Efficient 3D Representation Learning for Medical Image Analysis. World Sci. Annu. Rev. Artif. Intell. 2: 2450002:1-2450002:27 (2024) - [c108]Abdussalam Elhanashi, Sergio Saponara, Pierpaolo Dini, Qinghe Zheng, Farzana Z. Ali, Yashbir Singh, Shiba Kuanar, Yuankai Huo, Khaled Younis:
Advanced Deep Learning in Medical Imaging: Brain Tumor Detection and Localization with YOLOv9. ApplePies 2024: 113-120 - [c107]Can Cui, Ruining Deng, Junlin Guo, Quan Liu, Tianyuan Yao, Haichun Yang, Yuankai Huo:
Enhancing Physician Flexibility: Prompt-Guided Multi-class Pathological Segmentation for Diverse Outcomes. BHI 2024: 1-8 - [c106]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong, Lining Yu, Yifei Wu, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo:
PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation. CVPR 2024: 11736-11746 - [c105]Shunxing Bao, Junlin Guo, Ho Hin Lee, Ruining Deng, Can Cui, Lucas W. Remedios, Quan Liu, Qi Yang, Kaiwen Xu, Xin Yu, Jia Li, Yike Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Mitigating Over-Saturated Fluorescence Images Through a Semi-Supervised Generative Adversarial Network. ISBI 2024: 1-5 - [c104]Tianyuan Yao, Derek B. Archer, Zhiyuan Li, Leon Y. Cai, Praitayini Kanakaraj, Nancy Newlin, Quan Liu, Ruining Deng, Can Cui, Shunxing Bao, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
Ts-FWE: Token-Aware Single-Shell Free Water Estimation for Brain Diffusion MRI. CDMRI@MICCAI 2024: 132-142 - [c103]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao, Hao Li, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo:
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis. MICCAI (4) 2024: 155-166 - [c102]Enzhi Zhang, Isaac Lyngaas, Peng Chen, Xiao Wang, Jun Igarashi, Yuankai Huo, Masaharu Munetomo, Mohamed Wahib:
Adaptive Patching for High-resolution Image Segmentation with Transformers. SC 2024: 76 - [i140]Ho Hin Lee, Adam M. Saunders, Michael E. Kim, Samuel W. Remedios, Yucheng Tang, Qi Yang, Xin Yu, Shunxing Bao, Chloe Cho, Louise A. Mawn, Tonia S. Rex, Kevin L. Schey, Blake E. Dewey, Jeffrey M. Spraggins, Jerry L. Prince, Yuankai Huo, Bennett A. Landman:
Super-Resolution Multi-Contrast Unbiased Eye Atlases With Deep Probabilistic Refinement. CoRR abs/2401.03060 (2024) - [i139]Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Z. Li, Ruining Deng, Can Cui, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, Bennett A. Landman:
Nucleus subtype classification using inter-modality learning. CoRR abs/2401.05602 (2024) - [i138]Ho Hin Lee, Yu Gu, Theodore Zhao, Yanbo Xu, Jianwei Yang, Naoto Usuyama, Cliff Wong, Mu Wei, Bennett A. Landman, Yuankai Huo, Alberto Santamaría-Pang, Hoifung Poon:
Foundation Models for Biomedical Image Segmentation: A Survey. CoRR abs/2401.07654 (2024) - [i137]Quan Liu, Jiawen Yao, Lisha Yao, Xin Chen, Jingren Zhou, Le Lu, Ling Zhang, Zaiyi Liu, Yuankai Huo:
M2Fusion: Bayesian-based Multimodal Multi-level Fusion on Colorectal Cancer Microsatellite Instability Prediction. CoRR abs/2401.07854 (2024) - [i136]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong, Lining Yu, Yifei Wu, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo:
PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation. CoRR abs/2402.19286 (2024) - [i135]Juming Xiong, Ethan H. Nguyen, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernán Correa, Girish Hiremath, Yaohong Wang, Haichun Yang, Agnes B. Fogo, Yuankai Huo:
Circle Representation for Medical Instance Object Segmentation. CoRR abs/2403.11507 (2024) - [i134]Enzhi Zhang, Isaac Lyngaas, Peng Chen, Xiao Wang, Jun Igarashi, Yuankai Huo, Mohamed Wahib, Masaharu Munetomo:
Adaptive Patching for High-resolution Image Segmentation with Transformers. CoRR abs/2404.09707 (2024) - [i133]Chenyu Gao, Shunxing Bao, Michael E. Kim, Nancy Newlin, Praitayini Kanakaraj, Tianyuan Yao, Gaurav Rudravaram, Yuankai Huo, Daniel Moyer, Kurt Schilling, Walter Kukull, Arthur W. Toga, Derek B. Archer, Timothy J. Hohman, Bennett A. Landman, Zhiyuan Li:
Field-of-View Extension for Diffusion MRI via Deep Generative Models. CoRR abs/2405.03652 (2024) - [i132]Quan Liu, Brandon T. Swartz, Ivan I. Kravchenko, Jason G. Valentine, Yuankai Huo:
ExtremeMETA: High-speed Lightweight Image Segmentation Model by Remodeling Multi-channel Metamaterial Imagers. CoRR abs/2405.17568 (2024) - [i131]Quan Liu, Ruining Deng, Can Cui, Tianyuan Yao, Vishwesh Nath, Yucheng Tang, Yuankai Huo:
mTREE: Multi-Level Text-Guided Representation End-to-End Learning for Whole Slide Image Analysis. CoRR abs/2405.17824 (2024) - [i130]Jialin Yue, Tianyuan Yao, Ruining Deng, Quan Liu, Juming Xiong, Haichun Yang, Yuankai Huo:
Weighted Circle Fusion: Ensembling Circle Representation from Different Object Detection Results. CoRR abs/2406.19540 (2024) - [i129]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao, Hao Li, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo:
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis. CoRR abs/2407.00596 (2024) - [i128]Yucheng Tang, Yufan He, Vishwesh Nath, Pengfei Guo, Ruining Deng, Tianyuan Yao, Quan Liu, Can Cui, Mengmeng Yin, Ziyue Xu, Holger Roth, Daguang Xu, Haichun Yang, Yuankai Huo:
HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization. CoRR abs/2407.03307 (2024) - [i127]Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Z. Li, Ruining Deng, Nancy R. Newlin, Adam M. Saunders, Can Cui, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, Bennett A. Landman:
Data-driven Nucleus Subclassification on Colon H&E using Style-transferred Digital Pathology. CoRR abs/2407.06116 (2024) - [i126]Can Cui, Ruining Deng, Junlin Guo, Quan Liu, Tianyuan Yao, Haichun Yang, Yuankai Huo:
PFPs: Prompt-guided Flexible Pathological Segmentation for Diverse Potential Outcomes Using Large Vision and Language Models. CoRR abs/2407.09979 (2024) - [i125]Muyang Li, Can Cui, Quan Liu, Ruining Deng, Tianyuan Yao, Marilyn Lionts, Yuankai Huo:
Dataset Distillation in Medical Imaging: A Feasibility Study. CoRR abs/2407.14429 (2024) - [i124]Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo:
Adapting Mouse Pathological Model to Human Glomerular Lesion Segmentation. CoRR abs/2407.18390 (2024) - [i123]Siqi Lu, Junlin Guo, James Zimmer-Dauphinee, Jordan M. Nieusma, Xiao Wang, Parker VanValkenburgh, Steven A. Wernke, Yuankai Huo:
AI Foundation Models in Remote Sensing: A Survey. CoRR abs/2408.03464 (2024) - [i122]Junlin Guo, Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao, Yizhe Lin, Marilyn Lionts, Quan Liu, Juming Xiong, Catie Chang, Mitchell Wilkes, Mengmeng Yin, Haichun Yang, Yuankai Huo:
Assessment of Cell Nuclei AI Foundation Models in Kidney Pathology. CoRR abs/2408.06381 (2024) - [i121]Yanfan Zhu, Yash Singh, Khaled Younis, Shunxing Bao, Yuankai Huo:
Persistence Image from 3D Medical Image: Superpixel and Optimized Gaussian Coefficient. CoRR abs/2408.07905 (2024) - [i120]Junchao Zhu, Mengmeng Yin, Ruining Deng, Yitian Long, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo:
Cross-Species Data Integration for Enhanced Layer Segmentation in Kidney Pathology. CoRR abs/2408.09278 (2024) - [i119]Zhengyi Lu, Hao Liang, Xiao Wang, Xinqiang Yan, Yuankai Huo:
Optimizing Transmit Field Inhomogeneity of Parallel RF Transmit Design in 7T MRI using Deep Learning. CoRR abs/2408.11323 (2024) - [i118]Lucas W. Remedios, Han Liu, Samuel W. Remedios, Lianrui Zuo, Adam M. Saunders, Shunxing Bao, Yuankai Huo, Alvin C. Powers, John Virostko, Bennett A. Landman:
Influence of Early through Late Fusion on Pancreas Segmentation from Imperfectly Registered Multimodal MRI. CoRR abs/2409.04563 (2024) - [i117]Zhiyuan Li, Tianyuan Yao, Praitayini Kanakaraj, Chenyu Gao, Shunxing Bao, Lianrui Zuo, Michael E. Kim, Nancy R. Newlin, Gaurav Rudravaram, Nazirah Mohd Khairi, Yuankai Huo, Kurt G. Schilling, Walter Kukull, Arthur W. Toga, Derek B. Archer, Timothy J. Hohman, Bennett A. Landman:
Multi-Modality Conditioned Variational U-Net for Field-of-View Extension in Brain Diffusion MRI. CoRR abs/2409.13846 (2024) - [i116]Muyang Li, Juming Xiong, Ruining Deng, Tianyuan Yao, Regina N. Tyree, Girish Hiremath, Yuankai Huo:
Automatic Image Unfolding and Stitching Framework for Esophageal Lining Video Based on Density-Weighted Feature Matching. CoRR abs/2410.01148 (2024) - [i115]Chenyu Gao, Michael E. Kim, Karthik Ramadass, Praitayini Kanakaraj, Aravind R. Krishnan, Adam M. Saunders, Nancy R. Newlin, Ho Hin Lee, Qi Yang, Warren D. Taylor, Brian D. Boyd, Lori L. Beason-Held, Susan M. Resnick, Lisa L. Barnes, David A. Bennett, Katherine D. Van Schaik, Derek B. Archer, Timothy J. Hohman, Angela L. Jefferson, Ivana Isgum, Daniel Moyer, Yuankai Huo, Kurt G. Schilling, Lianrui Zuo, Shunxing Bao, Nazirah Mohd Khairi, Zhiyuan Li, Christos Davatzikos, Bennett A. Landman:
Brain age identification from diffusion MRI synergistically predicts neurodegenerative disease. CoRR abs/2410.22454 (2024) - [i114]Junlin Guo, Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao, Yizhe Lin, Marilyn Lionts, Quan Liu, Juming Xiong, Yu Wang, Shilin Zhao, Catie Chang, Mitchell Wilkes, Mengmeng Yin, Haichun Yang, Yuankai Huo:
How Good Are We? Evaluating Cell AI Foundation Models in Kidney Pathology with Human-in-the-Loop Enrichment. CoRR abs/2411.00078 (2024) - [i113]Yifei Wu, Juming Xiong, Tianyuan Yao, Ruining Deng, Junlin Guo, Jialin Yue, Naweed Chowdhury, Yuankai Huo:
Cross-organ Deployment of EOS Detection AI without Retraining: Feasibility and Limitation. CoRR abs/2411.15942 (2024) - [i112]Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui, Junlin Guo, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo:
Glo-In-One-v2: Holistic Identification of Glomerular Cells, Tissues, and Lesions in Human and Mouse Histopathology. CoRR abs/2411.16961 (2024) - [i111]Jialin Yue, Tianyuan Yao, Ruining Deng, Siqi Lu, Junlin Guo, Quan Liu, Mengmeng Yin, Juming Xiong, Haichun Yang, Yuankai Huo:
GloFinder: AI-empowered QuPath Plugin for WSI-level Glomerular Detection, Visualization, and Curation. CoRR abs/2411.18795 (2024) - [i110]Junchao Zhu, Ruining Deng, Tianyuan Yao, Juming Xiong, Chongyu Qu, Junlin Guo, Siqi Lu, Mengmeng Yin, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo:
ASIGN: An Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial Transcriptomics. CoRR abs/2412.03026 (2024) - [i109]Jun Ma, Feifei Li, Sumin Kim, Reza Asakereh, Bao-Hiep Le, Dang-Khoa Nguyen-Vu, Alexander Pfefferle, Muxin Wei, Ruochen Gao, Donghang Lyu, Songxiao Yang, Lennart Purucker, Zdravko Marinov, Marius Staring, Haisheng Lu, Thuy Thanh Dao, Xincheng Ye, Zhi Li, Gianluca Brugnara, Philipp Vollmuth, Martha Foltyn-Dumitru, Jaeyoung Cho, Mustafa A. Mahmutoglu, Martin Bendszus, Irada Pflüger, Aditya Rastogi, Dong Ni, Xin Yang, Guang-Quan Zhou, Kaini Wang, Nicholas Heller, Nikolaos Papanikolopoulos, Christopher Weight, Yubing Tong, Jayaram K. Udupa, Patrick J. Cahill, Yaqi Wang, Yifan Zhang, Francisco Contijoch, Elliot R. McVeigh, Xin Ye, Shucheng He, Robert Haase, Thomas Pinetz, Alexander Radbruch, Inga Krause, Erich Kobler, Jian He, Yucheng Tang, Haichun Yang, Yuankai Huo, Gongning Luo, Kaisar Kushibar, Jandos Amankulov, Dias Toleshbayev, Amangeldi Mukhamejan, Jan Egger, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Shohei Fujita, Tomohiro Kikuchi, Benedikt Wiestler, Jan S. Kirschke, Ezequiel de la Rosa, Federico Bolelli, Luca Lumetti, Costantino Grana, Kunpeng Xie, Guomin Wu, Behrus Puladi, Carlos Martín-Isla, Karim Lekadir, Víctor M. Campello, Wei Shao, Wayne Brisbane, Hongxu Jiang, Hao Wei, Wu Yuan, Shuangle Li, Yuyin Zhou, Bo Wang:
Efficient MedSAMs: Segment Anything in Medical Images on Laptop. CoRR abs/2412.16085 (2024) - 2023
- [j35]Mingquan Lin, Bo-Jian Hou, Swati Mishra, Tianyuan Yao, Yuankai Huo, Qian Yang, Fei Wang, George Shih, Yifan Peng:
Enhancing thoracic disease detection using chest X-rays from PubMed Central Open Access. Comput. Biol. Medicine 159: 106962 (2023) - [j34]Mana Moassefi, Pouria Rouzrokh, Gian Marco Conte, Sanaz Vahdati, Tianyuan Fu, Aylin Tahmasebi, Mira Younis, Keyvan Farahani, Amilcare Gentili, Timothy Kline, Felipe C. Kitamura, Yuankai Huo, Shiba Kuanar, Khaled Younis, Bradley J. Erickson, Shahriar Faghani:
Reproducibility of Deep Learning Algorithms Developed for Medical Imaging Analysis: A Systematic Review. J. Imaging Inform. Medicine 36(5): 2306-2312 (2023) - [j33]Kaiwen Xu, Thomas Z. Li, Mirza S. Khan, Riqiang Gao, Sanja L. Antic, Yuankai Huo, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Body composition assessment with limited field-of-view computed tomography: A semantic image extension perspective. Medical Image Anal. 88: 102852 (2023) - [j32]Xin Yu, Qi Yang, Yinchi Zhou, Leon Y. Cai, Riqiang Gao, Ho Hin Lee, Thomas Z. Li, Shunxing Bao, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Zizhao Zhang, Yuankai Huo, Bennett A. Landman, Yucheng Tang:
UNesT: Local spatial representation learning with hierarchical transformer for efficient medical segmentation. Medical Image Anal. 90: 102939 (2023) - [j31]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo:
Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation. IEEE Trans. Biomed. Eng. 70(9): 2636-2644 (2023) - [j30]Ho Hin Lee, Yucheng Tang, Qi Yang, Xin Yu, Leon Y. Cai, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Yuankai Huo:
Semantic-Aware Contrastive Learning for Multi-Object Medical Image Segmentation. IEEE J. Biomed. Health Informatics 27(9): 4444-4453 (2023) - [j29]Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Pew-Thian Yap, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Jens Sjölund, Daniel Grzech, Huaqi Qiu, Zeju Li, Alexander Thorley, Jinming Duan, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Nikolas Lessmann, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich:
Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning. IEEE Trans. Medical Imaging 42(3): 697-712 (2023) - [c101]Zekun Wang, Pengwei Wang, Peter C. Louis, Lee E. Wheless, Yuankai Huo:
WearMask: Fast in-browser face mask detection with serverless edge computing for COVID-19. High Performance Computing for Imaging 2023: 1-6 - [c100]Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation. ICLR 2023 - [c99]Tianyuan Yao, Nancy Newlin, Praitayini Kanakaraj, Vishwesh Nath, Leon Y. Cai, Karthik Ramadass, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
A Unified Learning Model for Estimating Fiber Orientation Distribution Functions on Heterogeneous Multi-shell Diffusion-Weighted MRI. CDMRI@MICCAI 2023: 13-22 - [c98]Can Cui, Yaohong Wang, Shunxing Bao, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Joseph T. Roland, Ken S. Lau, Qi Liu, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Feasibility of Universal Anomaly Detection Without Knowing the Abnormality in Medical Images. MILLanD@MICCAI 2023: 82-92 - [c97]Quan Liu, Jiawen Yao, Lisha Yao, Xin Chen, Jingren Zhou, Le Lu, Ling Zhang, Zaiyi Liu, Yuankai Huo:
M2Fusion: Bayesian-Based Multimodal Multi-level Fusion on Colorectal Cancer Microsatellite Instability Prediction. MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI 2023: 125-134 - [c96]Ruining Deng, Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev, Zuhayr Asad, Quan Liu, Can Cui, Yaohong Wang, Yihan Wang, Yucheng Tang, Haichun Yang, Yuankai Huo:
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-Empowered Learning. MICCAI (6) 2023: 497-507 - [c95]Ho Hin Lee, Quan Liu, Shunxing Bao, Qi Yang, Xin Yu, Leon Y. Cai, Thomas Z. Li, Yuankai Huo, Xenofon D. Koutsoukos, Bennett A. Landman:
Scaling up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation. MICCAI (4) 2023: 632-641 - [c94]Shunxing Bao, Ho Hin Lee, Qi Yang, Lucas Walker Remedios, Ruining Deng, Can Cui, Leon Yichen Cai, Kaiwen Xu, Xin Yu, Sophie Chiron, Yike Li, Nathan Heath Patterson, Yaohong Wang, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Alleviating tiling effect by random walk sliding window in high-resolution histological whole slide image synthesis. MIDL 2023: 1406-1422 - [c93]Shunxing Bao, Can Cui, Jia Li, Yucheng Tang, Ho Hin Lee, Ruining Deng, Lucas W. Remedios, Xin Yu, Qi Yang, Sophie Chiron, Nathan Heath Patterson, Ken S. Lau, Qi Liu, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Topological-preserving membrane skeleton segmentation in multiplex immunofluorescence imaging. Digital and Computational Pathology 2023 - [c92]Can Cui, Shunxing Bao, Jia Li, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Sophie Chiron, Ken S. Lau, Yaohong Wang, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo:
Influence of cell-type ratio on spatially resolved single-cell transcriptomes using the Tangram algorithm: based on implementation on single-cell and MxIF data. Digital and Computational Pathology 2023 - [c91]Haoju Leng, Ruining Deng, Zuhayr Asad, R. Michael Womick, Haichun Yang, Lipeng Wan, Yuankai Huo:
An accelerated pipeline for multi-label renal pathology image segmentation at the whole slide image level. Digital and Computational Pathology 2023 - [c90]Peize Li, Ruining Deng, Yuankai Huo:
An end-to-end pipeline for 3D slide-wise multi-stain renal pathology registration. Digital and Computational Pathology 2023 - [c89]Lucas W. Remedios, Shunxing Bao, Cailey I. Kerley, Leon Y. Cai, François Rheault, Ruining Deng, Can Cui, Sophie Chiron, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, Bennett A. Landman:
Predicting Crohn's disease severity in the colon using mixed cell nucleus density from pseudo labels. Digital and Computational Pathology 2023 - [c88]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Qi Yang, Xin Yu, Kevin L. Schey, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Unsupervised registration refinement for generating unbiased eye atlas. Image Processing 2023 - [c87]Karthik Ramadass, Xin Yu, Leon Y. Cai, Yucheng Tang, Shunxing Bao, Cailey I. Kerley, Micah D'Archangel, Laura A. Barquero, Allen T. Newton, Isabel Gauthier, Rankin W. McGugin, Benoit M. Dawant, Laurie E. Cutting, Yuankai Huo, Bennett A. Landman:
Deep whole brain segmentation of 7T structural MRI. Image Processing 2023 - [c86]Kaiwen Xu, Mirza S. Khan, Thomas Z. Li, Riqiang Gao, Sanja L. Antic, Yuankai Huo, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Stratification of lung cancer risk with thoracic imaging phenotypes. Image Processing 2023 - [c85]Tianyuan Yao, Francois Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy Newlin, Can Cui, Ruining Deng, Karthik Ramadass, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
Deep constrained spherical deconvolution for robust harmonization. Image Processing 2023 - [e3]Jonghye Woo, Alessa Hering, Wilson Silva, Xiang Li, Huazhu Fu, Xiaofeng Liu, Fangxu Xing, Sanjay Purushotham, Tejas Sudharshan Mathai, Pritam Mukherjee, Max De Grauw, Regina Beets-Tan, Valentina Corbetta, Elmar Kotter, Mauricio Reyes, Christian F. Baumgartner, Quanzheng Li, Richard M. Leahy, Bin Dong, Hao Chen, Yuankai Huo, Jinglei Lv, Xinxing Xu, Xiaomeng Li, Dwarikanath Mahapatra, Li Cheng, Caroline Petitjean, Benoît Presles:
Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops - MTSAIL 2023, LEAF 2023, AI4Treat 2023, MMMI 2023, REMIA 2023, Held in Conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8-12, 2023, Proceedings. Lecture Notes in Computer Science 14394, Springer 2023, ISBN 978-3-031-47424-8 [contents] - [i108]Ho Hin Lee, Quan Liu, Shunxing Bao, Qi Yang, Xin Yu, Leon Y. Cai, Thomas Z. Li, Yuankai Huo, Xenofon D. Koutsoukos, Bennett A. Landman:
Scaling Up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation. CoRR abs/2303.05785 (2023) - [i107]Tianyuan Yao, Nancy Newlin, Praitayini Kanakaraj, Vishwesh Nath, Leon Y. Cai, Karthik Ramadass, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
A Unified Single-stage Learning Model for Estimating Fiber Orientation Distribution Functions on Heterogeneous Multi-shell Diffusion-weighted MRI. CoRR abs/2303.16376 (2023) - [i106]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-scale Multi-instance Learning for Pathological Image Diagnosis. CoRR abs/2304.00216 (2023) - [i105]Kaiwen Xu, Aravind R. Krishnan, Thomas Z. Li, Yuankai Huo, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Zero-shot CT Field-of-view Completion with Unconditional Generative Diffusion Prior. CoRR abs/2304.03760 (2023) - [i104]Ruining Deng, Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Lee E. Wheless, Lori A. Coburn, Keith T. Wilson, Yaohong Wang, Shilin Zhao, Agnes B. Fogo, Haichun Yang, Yucheng Tang, Yuankai Huo:
Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging. CoRR abs/2304.04155 (2023) - [i103]Lucas W. Remedios, Leon Y. Cai, Samuel W. Remedios, Karthik Ramadass, Aravind R. Krishnan, Ruining Deng, Can Cui, Shunxing Bao, Lori A. Coburn, Yuankai Huo, Bennett A. Landman:
Exploring shared memory architectures for end-to-end gigapixel deep learning. CoRR abs/2304.12149 (2023) - [i102]Peize Li, Ruining Deng, Yuankai Huo:
An End-to-end Pipeline for 3D Slide-wise Multi-stain Renal Pathology Registration. CoRR abs/2305.11968 (2023) - [i101]Haoju Leng, Ruining Deng, Zuhayr Asad, R. Michael Womick, Haichun Yang, Lipeng Wan, Yuankai Huo:
An Accelerated Pipeline for Multi-label Renal Pathology Image Segmentation at the Whole Slide Image Level. CoRR abs/2305.14566 (2023) - [i100]Ruining Deng, Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev, Zuhayr Asad, Quan Liu, Can Cui, Yucheng Tang, Haichun Yang, Yuankai Huo:
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered Learning. CoRR abs/2306.00047 (2023) - [i99]Yinchi Zhou, Ho Hin Lee, Yucheng Tang, Xin Yu, Qi Yang, Shunxing Bao, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Multi-Contrast Computed Tomography Atlas of Healthy Pancreas. CoRR abs/2306.01853 (2023) - [i98]Tianyuan Yao, Francois Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy Newlin, Can Cui, Ruining Deng, Karthik Ramadass, Andrea T. Shafer, Susan M. Resnick, Kurt Schilling, Bennett A. Landman, Yuankai Huo:
Robust Fiber ODF Estimation Using Deep Constrained Spherical Deconvolution for Diffusion MRI. CoRR abs/2306.02900 (2023) - [i97]Hanyu Zheng, Quan Liu, Ivan I. Kravchenko, Xiaomeng Zhang, Yuankai Huo, Jason G. Valentine:
Intelligent Multi-channel Meta-imagers for Accelerating Machine Vision. CoRR abs/2306.07365 (2023) - [i96]Can Cui, Ruining Deng, Quan Liu, Tianyuan Yao, Shunxing Bao, Lucas W. Remedios, Yucheng Tang, Yuankai Huo:
All-in-SAM: from Weak Annotation to Pixel-wise Nuclei Segmentation with Prompt-based Finetuning. CoRR abs/2307.00290 (2023) - [i95]Can Cui, Yaohong Wang, Shunxing Bao, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Zuhayr Asad, Joseph T. Roland, Ken S. Lau, Qi Liu, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Feasibility of Universal Anomaly Detection without Knowing the Abnormality in Medical Images. CoRR abs/2307.00750 (2023) - [i94]Quan Liu, Hanyu Zheng, Brandon T. Swartz, Ho Hin Lee, Zuhayr Asad, Ivan I. Kravchenko, Jason G. Valentine, Yuankai Huo:
Digital Modeling on Large Kernel Metamaterial Neural Network. CoRR abs/2307.11862 (2023) - [i93]Franklin Hu, Ruining Deng, Shunxing Bao, Haichun Yang, Yuankai Huo:
Multi-scale Multi-site Renal Microvascular Structures Segmentation for Whole Slide Imaging in Renal Pathology. CoRR abs/2308.05782 (2023) - [i92]Haoju Leng, Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang, Haichun Yang, Xiao Wang, Yifan Peng, Lipeng Wan, Yuankai Huo:
High-performance Data Management for Whole Slide Image Analysis in Digital Pathology. CoRR abs/2308.05784 (2023) - [i91]Xueyuan Li, Ruining Deng, Yucheng Tang, Shunxing Bao, Haichun Yang, Yuankai Huo:
Leverage Weakly Annotation to Pixel-wise Annotation via Zero-shot Segment Anything Model for Molecular-empowered Learning. CoRR abs/2308.05785 (2023) - [i90]Jiayuan Chen, Yu Wang, Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Yilin Liu, Jianyong Zhong, Agnes B. Fogo, Haichun Yang, Shilin Zhao, Yuankai Huo:
Spatial Pathomics Toolkit for Quantitative Analysis of Podocyte Nuclei with Histology and Spatial Transcriptomics Data in Renal Pathology. CoRR abs/2308.06288 (2023) - [i89]Juming Xiong, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernán Correa, Girish Hiremath, Yaohong Wang, Yuankai Huo:
Deep Learning-Based Open Source Toolkit for Eosinophil Detection in Pediatric Eosinophilic Esophagitis. CoRR abs/2308.06333 (2023) - [i88]Yilin Liu, Ruining Deng, Juming Xiong, Regina N. Tyree, Hernán Correa, Girish Hiremath, Yaohong Wang, Yuankai Huo:
Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation. CoRR abs/2308.08974 (2023) - [i87]Shunxing Bao, Sichen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun, Ruining Deng, Can Cui, Yike Li, Jia Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Subra Kugathasan, Peng Qiu, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures. CoRR abs/2308.10166 (2023) - [i86]Muhao Liu, Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo:
Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers. CoRR abs/2309.02563 (2023) - [i85]Xin Yu, Yucheng Tang, Qi Yang, Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration. CoRR abs/2309.04071 (2023) - [i84]Xin Yu, Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai, Ho Hin Lee, Yuankai Huo, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization. CoRR abs/2309.09392 (2023) - [i83]Ho Hin Lee, Quan Liu, Qi Yang, Xin Yu, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
DeformUX-Net: Exploring a 3D Foundation Backbone for Medical Image Segmentation with Depthwise Deformable Convolution. CoRR abs/2310.00199 (2023) - [i82]Chenyu Gao, Michael E. Kim, Ho Hin Lee, Qi Yang, Nazirah Mohd Khairi, Praitayini Kanakaraj, Nancy R. Newlin, Derek B. Archer, Angela L. Jefferson, Warren D. Taylor, Brian D. Boyd, Lori L. Beason-Held, Susan M. Resnick, The BIOCARD Study Team, Yuankai Huo, Katherine D. Van Schaik, Kurt G. Schilling, Daniel Moyer, Ivana Isgum, Bennett A. Landman:
Predicting Age from White Matter Diffusivity with Residual Learning. CoRR abs/2311.03500 (2023) - 2022
- [j28]Hyeonsoo Moon, Yuankai Huo, Richard G. Abramson, Richard Alan Peters, Albert Assad, Tamara K. Moyo, Michael R. Savona, Bennett A. Landman:
Corrigendum to "Acceleration of spleen segmentation with end-to-end deep learning method and automated pipeline" [Comput. Biol. Med. 107 (2019) 109-117]. Comput. Biol. Medicine 140: 107 (2022) - [j27]Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias P. Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Multi-contrast computed tomography healthy kidney atlas. Comput. Biol. Medicine 146: 105555 (2022) - [j26]Riqiang Gao, Thomas Z. Li, Yucheng Tang, Kaiwen Xu, Mirza S. Khan, Michael N. Kammer, Sanja L. Antic, Stephen Deppen, Yuankai Huo, Thomas A. Lasko, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Reducing uncertainty in cancer risk estimation for patients with indeterminate pulmonary nodules using an integrated deep learning model. Comput. Biol. Medicine 150: 106113 (2022) - [j25]Praitayini Kanakaraj, Karthik Ramadass, Shunxing Bao, Melissa A. Basford, Laura M. Jones, Ho Hin Lee, Kaiwen Xu, Kurt G. Schilling, John Jeffrey Carr, James G. Terry, Yuankai Huo, Kim L. Sandler, Allen T. Netwon, Bennett A. Landman:
Workflow Integration of Research AI Tools into a Hospital Radiology Rapid Prototyping Environment. J. Digit. Imaging 35(4): 1023-1033 (2022) - [j24]Shunxing Bao, Brian D. Boyd, Praitayini Kanakaraj, Karthik Ramadass, Francisco A. C. Meyer, Yuqian Liu, William E. Duett, Yuankai Huo, Ilwoo Lyu, David H. Zald, Seth A. Smith, Baxter P. Rogers, Bennett A. Landman:
Integrating the BIDS Neuroimaging Data Format and Workflow Optimization for Large-Scale Medical Image Analysis. J. Digit. Imaging 35(6): 1576-1589 (2022) - [j23]Shuihua Wang, Zhengchao Dong, Zheng Zhang, Yuankai Huo, M. Emre Celebi, Caifeng Shan:
Guest Editorial Emerging Challenges for Deep Learning. IEEE J. Biomed. Health Informatics 26(11): 5287-5288 (2022) - [j22]Ethan H. Nguyen, Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo:
Circle Representation for Medical Object Detection. IEEE Trans. Medical Imaging 41(3): 746-754 (2022) - [c84]Shuang Zhou, Yuankai Huo, Shunxing Bao, Bennett A. Landman, Aniruddha Gokhale:
FedACA: An Adaptive Communication-Efficient Asynchronous Framework for Federated Learning. ACSOS 2022: 71-80 - [c83]Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo:
MAG: A Simple Learning-Based Patient-Level Aggregation Method for Detecting Microsatellite Instability from Whole-Slide Images. ISBI 2022: 1-4 - [c82]Can Cui, Zuhayr Asad, William F. Dean, Isabelle T. Smith, Christopher Madden, Shunxing Bao, Bennett A. Landman, Joseph T. Roland, Lori A. Coburn, Keith T. Wilson, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo:
Multi-modal learning with missing data for cancer diagnosis using histopathological and genomic data. Computer-Aided Diagnosis 2022 - [c81]Yuzhe Lu, Aadarsh Jha, Ruining Deng, Yuankai Huo:
Contrastive learning meets transfer learning: a case study in medical image analysis. Computer-Aided Diagnosis 2022 - [c80]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-Scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images. MMMI@MICCAI 2022: 24-33 - [c79]Shunxing Bao, Jia Li, Can Cui, Yucheng Tang, Ruining Deng, Lucas W. Remedios, Ho Hin Lee, Sophie Chiron, Nathan Heath Patterson, Ken S. Lau, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Qi Liu, Yuankai Huo:
MxIF Q-score: Biology-Informed Quality Assurance for Multiplexed Immunofluorescence Imaging. MOVI@MICCAI 2022: 42-52 - [c78]Quan Liu, Can Cui, Ruining Deng, Zuhayr Asad, Tianyuan Yao, Zheyu Zhu, Yuankai Huo:
Leverage Supervised and Self-supervised Pretrain Models for Pathological Survival Analysis via a Simple and Low-cost Joint Representation Tuning. REMIA@MICCAI 2022: 75-84 - [c77]Xin Yu, Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai, Ho Hin Lee, Yuankai Huo, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Reducing Positional Variance in Cross-sectional Abdominal CT Slices with Deep Conditional Generative Models. MICCAI (8) 2022: 202-212 - [c76]Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo:
CircleSnake: Instance Segmentation with Circle Representation. MLMI@MICCAI 2022: 298-306 - [c75]Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo:
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data. MICCAI (5) 2022: 626-635 - [c74]Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo:
Single Dynamic Network for Multi-label Renal Pathology Image Segmentation. MIDL 2022: 304-314 - [c73]Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Qi Yang, Xin Yu, Sophie Chiron, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo:
Inpainting missing tissue in multiplexed immunofluorescence imaging. Digital and Computational Pathology 2022 - [c72]Ruining Deng, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Shiru Wang, Lee E. Wheless, Agnes B. Fogo, Yuankai Huo:
Dense multi-object 3D glomerular reconstruction and quantification on 2D serial section whole slide images. Digital and Computational Pathology 2022 - [c71]Yuxuan Shi, Quan Liu, Jiachen Xu, Zuhayr Asad, Can Cui, Hernán Correa, Yash Choksi, Girish Hiremath, Yuankai Huo:
Eosinophilic esophagitis multi-label feature recognition on whole slide imaging using transfer learning. Digital and Computational Pathology 2022 - [c70]Tianyuan Yao, Yuzhe Lu, Ruining Deng, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Lee E. Wheless, Agnes B. Fogo, Yuankai Huo:
Self-supervised learning with large-scale web image mining for characterizing glomerular lesions. Digital and Computational Pathology 2022 - [c69]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Yan Xu, Qi Yang, Xin Yu, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Jeffrey M. Spraggins, Mattias P. Heinrich, Yuankai Huo, Bennett A. Landman:
Supervised deep generation of high-resolution arterial phase computed tomography kidney substructure atlas. Image Processing 2022 - [c68]Quan Liu, Bryan A. Millis, Zuhayr Asad, Can Cui, William F. Dean, Isabelle T. Smith, Christopher Madden, Joseph T. Roland, Jeffrey P. Zwerner, Shilin Zhao, Lee E. Wheless, Yuankai Huo:
Integrate memory efficiency methods for self-supervised learning on pathological image analysis. Image Processing 2022 - [c67]Cam Nguyen, Zuhayr Asad, Ruining Deng, Yuankai Huo:
Evaluating transformer-based semantic segmentation networks for pathological image segmentation. Image Processing 2022 - [c66]Karthik Ramadass, Francois Rheault, Leon Y. Cai, Lucas W. Remedios, Micah D'Archangel, Ilwoo Lyu, Laura A. Barquero, Allen T. Newton, Laurie E. Cutting, Yuankai Huo, Bennett A. Landman:
Ultra-high-resolution mapping of cortical layers 3T-guided 7T MRI. Image Processing 2022 - [c65]Kaiwen Xu, Riqiang Gao, Yucheng Tang, Steve A. Deppen, Kim L. Sandler, Michael N. Kammer, Sanja L. Antic, Fabien Maldonado, Yuankai Huo, Mirza S. Khan, Bennett A. Landman:
Extending the value of routine lung screening CT with quantitative body composition assessment. Image Processing 2022 - [c64]Zheyu Zhu, Ruining Deng, Quan Liu, Zuhayr Asad, Can Cui, Tianyuan Yao, Yuankai Huo:
Large-Scale Patch-Wise Pathological Image Feature Dataset with a Hardware-agnostic Feature Extraction Tool. MIUA 2022: 778-786 - [e2]Yuankai Huo, Bryan A. Millis, Yuyin Zhou, Xiangxue Wang, Adam P. Harrison, Ziyue Xu:
Medical Optical Imaging and Virtual Microscopy Image Analysis - First International Workshop, MOVI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings. Lecture Notes in Computer Science 13578, Springer 2022, ISBN 978-3-031-16960-1 [contents] - [e1]Xiang Li, Jinglei Lv, Yuankai Huo, Bin Dong, Richard M. Leahy, Quanzheng Li:
Multiscale Multimodal Medical Imaging - Third International Workshop, MMMI 2022, Held in Conjunction with MICCAI 2022, Singapore, September 22, 2022, Proceedings. Lecture Notes in Computer Science 13594, Springer 2022, ISBN 978-3-031-18813-8 [contents] - [i81]Kaifeng Pang, Zuhayr Asad, Shilin Zhao, Yuankai Huo:
MAg: a simple learning-based patient-level aggregation method for detecting microsatellite instability from whole-slide images. CoRR abs/2201.04769 (2022) - [i80]Yuzhe Lu, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Tianyuan Yao, Jiachen Xu, Agnes B. Fogo, Yuankai Huo:
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification. CoRR abs/2202.00087 (2022) - [i79]Xin Yu, Yucheng Tang, Yinchi Zhou, Riqiang Gao, Qi Yang, Ho Hin Lee, Thomas Z. Li, Shunxing Bao, Yuankai Huo, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Bennett A. Landman:
Characterizing Renal Structures with 3D Block Aggregate Transformers. CoRR abs/2203.02430 (2022) - [i78]Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo:
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomics, and Demographic Data. CoRR abs/2203.04419 (2022) - [i77]Can Cui, Haichun Yang, Yaohong Wang, Shilin Zhao, Zuhayr Asad, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo:
Deep Multi-modal Fusion of Image and Non-image Data in Disease Diagnosis and Prognosis: A Review. CoRR abs/2203.15588 (2022) - [i76]Ho Hin Lee, Yucheng Tang, Riqiang Gao, Qi Yang, Xin Yu, Shunxing Bao, James G. Terry, John Jeffrey Carr, Yuankai Huo, Bennett A. Landman:
Pseudo-Label Guided Multi-Contrast Generalization for Non-Contrast Organ-Aware Segmentation. CoRR abs/2205.05898 (2022) - [i75]Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo:
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining. CoRR abs/2206.00123 (2022) - [i74]Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo:
Omni-Seg+: A Scale-aware Dynamic Network for Pathological Image Segmentation. CoRR abs/2206.13632 (2022) - [i73]Kaiwen Xu, Thomas Z. Li, Mirza S. Khan, Riqiang Gao, Sanja L. Antic, Yuankai Huo, Kim L. Sandler, Fabien Maldonado, Bennett A. Landman:
Body Composition Assessment with Limited Field-of-view Computed Tomography: A Semantic Image Extension Perspective. CoRR abs/2207.06551 (2022) - [i72]Ruining Deng, Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron, Jia Li, Joseph T. Roland, Ken S. Lau, Qi Liu, Keith T. Wilson, Yaohong Wang, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cross-scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images. CoRR abs/2208.07322 (2022) - [i71]Tianyuan Yao, Chang Qu, Jun Long, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Zuhayr Asad, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Haichun Yang, Catie Chang, Yuankai Huo:
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning. CoRR abs/2208.14357 (2022) - [i70]Xin Yu, Qi Yang, Yinchi Zhou, Leon Y. Cai, Riqiang Gao, Ho Hin Lee, Thomas Z. Li, Shunxing Bao, Zhoubing Xu, Thomas A. Lasko, Richard G. Abramson, Zizhao Zhang, Yuankai Huo, Bennett A. Landman, Yucheng Tang:
UNesT: Local Spatial Representation Learning with Hierarchical Transformer for Efficient Medical Segmentation. CoRR abs/2209.14378 (2022) - [i69]Xin Yu, Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai, Ho Hin Lee, Yuankai Huo, Ann Zenobia Moore, Luigi Ferrucci, Bennett A. Landman:
Reducing Positional Variance in Cross-sectional Abdominal CT Slices with Deep Conditional Generative Models. CoRR abs/2209.14467 (2022) - [i68]Ho Hin Lee, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation. CoRR abs/2209.15076 (2022) - [i67]Ho Hin Lee, Yucheng Tang, Han Liu, Yubo Fan, Leon Y. Cai, Qi Yang, Xin Yu, Shunxing Bao, Yuankai Huo, Bennett A. Landman:
Adaptive Contrastive Learning with Dynamic Correlation for Multi-Phase Organ Segmentation. CoRR abs/2210.08652 (2022) - [i66]Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo:
CircleSnake: Instance Segmentation with Circle Representation. CoRR abs/2211.01254 (2022) - [i65]Qi Yang, Xin Yu, Ho Hin Lee, Leon Y. Cai, Kaiwen Xu, Shunxing Bao, Yuankai Huo, Ann Zenobia Moore, Sokratis Makrogiannis, Luigi Ferrucci, Bennett A. Landman:
Single Slice Thigh CT Muscle Group Segmentation with Domain Adaptation and Self-Training. CoRR abs/2212.00059 (2022) - 2021
- [j21]Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng, Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo:
ASIST: Annotation-free synthetic instance segmentation and tracking by adversarial simulations. Comput. Biol. Medicine 134: 104501 (2021) - [j20]Yucheng Tang, Riqiang Gao, Ho Hin Lee, Shizhong Han, Yunqiang Chen, Dashan Gao, Vishwesh Nath, Camilo Bermudez, Michael R. Savona, Richard G. Abramson, Shunxing Bao, Ilwoo Lyu, Yuankai Huo, Bennett A. Landman:
High-resolution 3D abdominal segmentation with random patch network fusion. Medical Image Anal. 69: 101894 (2021) - [j19]Mengyang Zhao, Aadarsh Jha, Quan Liu, Bryan A. Millis, Anita Mahadevan-Jansen, Le Lu, Bennett A. Landman, Matthew J. Tyska, Yuankai Huo:
Faster Mean-shift: GPU-accelerated clustering for cosine embedding-based cell segmentation and tracking. Medical Image Anal. 71: 102048 (2021) - [j18]Jorge A. Salas, Roza G. Bayrak, Yuankai Huo, Catie Chang:
Reconstruction of respiratory variation signals from fMRI data. NeuroImage 225: 117459 (2021) - [j17]Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu:
Lesion-Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale. IEEE Trans. Medical Imaging 40(1): 59-70 (2021) - [j16]Yucheng Tang, Riqiang Gao, Shizhong Han, Yunqiang Chen, Dashan Gao, Vishwesh Nath, Camilo Bermudez, Michael R. Savona, Shunxing Bao, Ilwoo Lyu, Yuankai Huo, Bennett A. Landman:
Body Part Regression With Self-Supervision. IEEE Trans. Medical Imaging 40(5): 1499-1507 (2021) - [j15]Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes B. Fogo, Yuankai Huo:
Map3D: Registration-Based Multi-Object Tracking on 3D Serial Whole Slide Images. IEEE Trans. Medical Imaging 40(7): 1924-1933 (2021) - [c63]Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Sophie Chiron, Ilwoo Lyu, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo:
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging. COMPAY@MICCAI 2021: 36-46 - [c62]Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo:
Beds: Bagging Ensemble Deep Segmentation For Nucleus Segmentation With Testing Stage Stain Augmentation. ISBI 2021: 659-662 - [c61]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Rap-Net: Coarse-To-Fine Multi-Organ Segmentation With Single Random Anatomical Prior. ISBI 2021: 1491-1494 - [c60]Yucheng Tang, Riqiang Gao, Ho Hin Lee, Qi Yang, Xin Yu, Yuyin Zhou, Shunxing Bao, Yuankai Huo, Jeffrey M. Spraggins, Jack Virostko, Zhoubing Xu, Bennett A. Landman:
Pancreas CT Segmentation by Predictive Phenotyping. MICCAI (1) 2021: 25-35 - [c59]Bolin Lai, Yuhsuan Wu, Xiaoyu Bai, Xiaoyun Zhou, Peng Wang, Jinzheng Cai, Yuankai Huo, Lingyun Huang, Yong Xia, Jing Xiao, Le Lu, Heping Hu, Adam P. Harrison:
Liver Tumor Localization and Characterization from Multi-phase MR Volumes Using Key-Slice Prediction: A Physician-Inspired Approach. PRIME@MICCAI 2021: 47-58 - [c58]Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo:
CaCL: Class-Aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns. DGM4MICCAI/DALI@MICCAI 2021: 93-102 - [c57]Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo:
SimTriplet: Simple Triplet Representation Learning with a Single GPU. MICCAI (2) 2021: 102-112 - [c56]Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Catie Chang, Haichun Yang, Yuankai Huo:
Compound Figure Separation of Biomedical Images with Side Loss. DGM4MICCAI/DALI@MICCAI 2021: 173-183 - [c55]Mengyang Zhao, Quan Liu, Aadarsh Jha, Ruining Deng, Tianyuan Yao, Anita Mahadevan-Jansen, Matthew J. Tyska, Bryan A. Millis, Yuankai Huo:
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning. MLMI@MICCAI 2021: 437-446 - [c54]Roza G. Bayrak, Colin B. Hansen, Jorge A. Salas, Nafis Ahmed, Ilwoo Lyu, Yuankai Huo, Catie Chang:
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics. MICCAI (7) 2021: 553-563 - [c53]Riqiang Gao, Yucheng Tang, Kaiwen Xu, Ho Hin Lee, Steve Deppen, Kim L. Sandler, Pierre P. Massion, Thomas A. Lasko, Yuankai Huo, Bennett A. Landman:
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective. MICCAI (5) 2021: 647-656 - [c52]Riqiang Gao, Yucheng Tang, Kaiwen Xu, Michael N. Kammer, Sanja L. Antic, Steve Deppen, Kim L. Sandler, Pierre P. Massion, Yuankai Huo, Bennett A. Landman:
Deep multi-path network integrating incomplete biomarker and chest CT data for evaluating lung cancer risk. Image Processing 2021 - [c51]Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias P. Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Construction of a multi-phase contrast computed tomography kidney atlas. Image Processing 2021 - [c50]Quan Liu, Isabella M. Gaeta, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo:
GAN based unsupervised segmentation: should we match the exact number of objects. Image Processing 2021 - [c49]Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo:
Improve global glomerulosclerosis classification with imbalanced data using CircleMix augmentation. Image Processing 2021 - [c48]Can Luo, James G. Terry, Yucheng Tang, Kaiwen Xu, Pierre P. Massion, Bennett A. Landman, Jeffrey Carr, Yuankai Huo:
Measure partial liver volumetric variations from paired inspiratory-expiratory chest CT scans. Image Processing 2021 - [c47]Yucheng Tang, Riqiang Gao, Ho Hin Lee, Zhoubing Xu, Brent V. Savoie, Shunxing Bao, Yuankai Huo, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Jeffrey M. Spraggins, Bennett A. Landman:
Renal cortex, medulla and pelvicaliceal system segmentation on arterial phase CT images with random patch-based networks. Image Processing 2021 - [c46]Kaiwen Xu, Riqiang Gao, Mirza S. Khan, Shunxing Bao, Yucheng Tang, Steve Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Mattias P. Heinrich, Bennett A. Landman:
Development and characterization of a chest CT atlas. Image Processing 2021 - [c45]Ye Chen, Yuankai Huo:
Limitation of acyclic oriented graphs matching as cell tracking accuracy measure when evaluating mitosis. Image Perception, Observer Performance, and Technology Assessment 2021 - [i64]Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng, Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo:
Towards Annotation-free Instance Segmentation and Tracking with Adversarial Simulations. CoRR abs/2101.00567 (2021) - [i63]Zekun Wang, Pengwei Wang, Peter C. Louis, Lee E. Wheless, Yuankai Huo:
WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19. CoRR abs/2101.00784 (2021) - [i62]Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo:
Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation. CoRR abs/2101.07654 (2021) - [i61]Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo:
BEDS: Bagging ensemble deep segmentation for nucleus segmentation with testing stage stain augmentation. CoRR abs/2102.08990 (2021) - [i60]Yuzhe Lu, Aadarsh Jha, Yuankai Huo:
Contrastive Learning Meets Transfer Learning: A Case Study In Medical Image Analysis. CoRR abs/2103.03166 (2021) - [i59]Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo:
SimTriplet: Simple Triplet Representation Learning with a Single GPU. CoRR abs/2103.05585 (2021) - [i58]Ho Hin Lee, Yucheng Tang, Qi Yang, Xin Yu, Shunxing Bao, Bennett A. Landman, Yuankai Huo:
Attention-Guided Supervised Contrastive Learning for Semantic Segmentation. CoRR abs/2106.01596 (2021) - [i57]Mengyang Zhao, Quan Liu, Aadarsh Jha, Ruining Deng, Tianyuan Yao, Anita Mahadevan-Jansen, Matthew J. Tyska, Bryan A. Millis, Yuankai Huo:
VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning. CoRR abs/2106.11480 (2021) - [i56]Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Catie Chang, Haichun Yang, Yuankai Huo:
Compound Figure Separation of Biomedical Images with Side Loss. CoRR abs/2107.08650 (2021) - [i55]Riqiang Gao, Yucheng Tang, Kaiwen Xu, Ho Hin Lee, Steve Deppen, Kim L. Sandler, Pierre P. Massion, Thomas A. Lasko, Yuankai Huo, Bennett A. Landman:
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective. CoRR abs/2107.11882 (2021) - [i54]Riqiang Gao, Mirza S. Khan, Yucheng Tang, Kaiwen Xu, Steve Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Technical Report: Quality Assessment Tool for Machine Learning with Clinical CT. CoRR abs/2107.12842 (2021) - [i53]Cam Nguyen, Zuhayr Asad, Yuankai Huo:
Evaluating Transformer based Semantic Segmentation Networks for Pathological Image Segmentation. CoRR abs/2108.11993 (2021) - [i52]Shunxing Bao, Yucheng Tang, Ho Hin Lee, Riqiang Gao, Sophie Chiron, Ilwoo Lyu, Lori A. Coburn, Keith T. Wilson, Joseph T. Roland, Bennett A. Landman, Yuankai Huo:
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging. CoRR abs/2109.09004 (2021) - [i51]Ethan H. Nguyen, Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo:
Circle Representation for Medical Object Detection. CoRR abs/2110.12093 (2021) - [i50]Alessa Hering, Lasse Hansen, Tony C. W. Mok, Albert C. S. Chung, Hanna Siebert, Stephanie Häger, Annkristin Lange, Sven Kuckertz, Stefan Heldmann, Wei Shao, Sulaiman Vesal, Mirabela Rusu, Geoffrey A. Sonn, Théo Estienne, Maria Vakalopoulou, Luyi Han, Yunzhi Huang, Mikael Brudfors, Yaël Balbastre, Samuel Joutard, Marc Modat, Gal Lifshitz, Dan Raviv, Jinxin Lv, Qiang Li, Vincent Jaouen, Dimitris Visvikis, Constance Fourcade, Mathieu Rubeaux, Wentao Pan, Zhe Xu, Bailiang Jian, Francesca De Benetti, Marek Wodzinski, Niklas Gunnarsson, Huaqi Qiu, Zeju Li, Christoph Großbröhmer, Andrew Hoopes, Ingerid Reinertsen, Yiming Xiao, Bennett A. Landman, Yuankai Huo, Keelin Murphy, Bram van Ginneken, Adrian V. Dalca, Mattias P. Heinrich:
Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning. CoRR abs/2112.04489 (2021) - [i49]Jiachen Xu, James Zimmer-Dauphinee, Quan Liu, Yuxuan Shi, Steven A. Wernke, Yuankai Huo:
Semi-Supervised Contrastive Learning for Remote Sensing: Identifying Ancient Urbanization in the South Central Andes. CoRR abs/2112.06437 (2021) - [i48]Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo:
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data. CoRR abs/2112.12665 (2021) - 2020
- [j14]Riqiang Gao, Yuankai Huo, Shunxing Bao, Yucheng Tang, Sanja L. Antic, Emily S. Epstein, Steve Deppen, Alexis B. Paulson, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Multi-path x-D recurrent neural networks for collaborative image classification. Neurocomputing 397: 48-59 (2020) - [j13]Riqiang Gao, Yucheng Tang, Kaiwen Xu, Yuankai Huo, Shunxing Bao, Sanja L. Antic, Emily S. Epstein, Steve Deppen, Alexis B. Paulson, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Time-distanced gates in long short-term memory networks. Medical Image Anal. 65: 101785 (2020) - [c44]Fengze Liu, Jinzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan L. Yuille, Le Lu, Chien-Hung Liao, Adam P. Harrison:
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-modal Image Alignment of Large-Scale Pathological CT Scans. ECCV (13) 2020: 257-274 - [c43]Ashwin Raju, Chi-Tung Cheng, Yuankai Huo, Jinzheng Cai, Junzhou Huang, Jing Xiao, Le Lu, Chien-Hung Liao, Adam P. Harrison:
Co-heterogeneous and Adaptive Segmentation from Multi-source and Multi-phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation. ECCV (23) 2020: 448-465 - [c42]Yucheng Tang, Riqiang Gao, Ho Hin Lee, Quinn Stanton Wells, Ashley Spann, James G. Terry, John Jeffrey Carr, Yuankai Huo, Shunxing Bao, Bennett A. Landman:
Prediction of Type II Diabetes Onset with Computed Tomography and Electronic Medical Records. ML-CDS/CLIP@MICCAI 2020: 13-23 - [c41]Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo:
CircleNet: Anchor-Free Glomerulus Detection with Circle Representation. MICCAI (4) 2020: 35-44 - [c40]Colin B. Hansen, Vishwesh Nath, Riqiang Gao, Camilo Bermudez, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Jeffrey D. Blume, Thomas A. Lasko, Bennett A. Landman:
Semi-supervised Machine Learning with MixMatch and Equivalence Classes. iMIMIC/MIL3ID/LABELS@MICCAI 2020: 112-121 - [c39]Zheyu Zhu, Yuzhe Lu, Ruining Deng, Haichun Yang, Agnes B. Fogo, Yuankai Huo:
EasierPath: An Open-Source Tool for Human-in-the-Loop Deep Learning of Renal Pathology. iMIMIC/MIL3ID/LABELS@MICCAI 2020: 214-222 - [c38]Roza G. Bayrak, Jorge A. Salas, Yuankai Huo, Catie Chang:
A Deep Pattern Recognition Approach for Inferring Respiratory Volume Fluctuations from fMRI Data. MICCAI (7) 2020: 428-436 - [c37]Bowen Li, Ke Yan, Dar-In Tai, Yuankai Huo, Le Lu, Jing Xiao, Adam P. Harrison:
Reliable Liver Fibrosis Assessment from Ultrasound Using Global Hetero-Image Fusion and View-Specific Parameterization. MICCAI (3) 2020: 606-615 - [c36]Camilo Bermudez, Justin A. Blaber, Samuel W. Remedios, Jess E. Reynolds, Catherine Lebel, Maureen McHugo, Stephan Heckers, Yuankai Huo, Bennett A. Landman:
Generalizing deep whole brain segmentation for pediatric and post-contrast MRI with augmented transfer learning. Image Processing 2020: 113130L - [c35]Riqiang Gao, Lingfeng Li, Yucheng Tang, Sanja L. Antic, Alexis B. Paulson, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Deep multi-task prediction of lung cancer and cancer-free progression from censored heterogenous clinical imaging. Image Processing 2020: 113130D - [c34]Ho Hin Lee, Yucheng Tang, Olivia Tang, Yuchen Xu, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Semi-supervised multi-organ segmentation through quality assurance supervision. Image Processing 2020: 113131I - [c33]Olivia Tang, Yuchen Xu, Yucheng Tang, Ho Hin Lee, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Validation and optimization of multi-organ segmentation on clinical imaging archives. Image Processing 2020: 113132O - [c32]Yucheng Tang, Ho Hin Lee, Yuchen Xu, Olivia Tang, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Camilo Bermudez, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Contrast phase classification with a generative adversarial network. Image Processing 2020: 1131310 - [c31]Yiyuan Yang, Riqiang Gao, Yucheng Tang, Sanja L. Antic, Steve Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Internal-transfer weighting of multi-task learning for lung cancer detection. Image Processing 2020: 1131323 - [c30]Yuchen Xu, Olivia Tang, Yucheng Tang, Ho Hin Lee, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Outlier guided optimization of abdominal segmentation. Image Processing 2020: 1131336 - [i47]Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu:
Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale. CoRR abs/2001.07776 (2020) - [i46]Yuchen Xu, Olivia Tang, Yucheng Tang, Ho Hin Lee, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Outlier Guided Optimization of Abdominal Segmentation. CoRR abs/2002.04098 (2020) - [i45]Yuchen Xu, Olivia Tang, Yucheng Tang, Ho Hin Lee, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Validation and Optimization of Multi-Organ Segmentation on Clinical Imaging Archives. CoRR abs/2002.04102 (2020) - [i44]Colin B. Hansen, Vishwesh Nath, Diego A. Mesa, Yuankai Huo, Bennett A. Landman, Thomas A. Lasko:
The Value of Nullspace Tuning Using Partial Label Information. CoRR abs/2003.07921 (2020) - [i43]Fengze Liu, Jinzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan L. Yuille, Le Lu, Chien-Hung Liao, Adam P. Harrison:
JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans. CoRR abs/2005.12209 (2020) - [i42]Ashwin Raju, Chi-Tung Cheng, Yuankai Huo, Jinzheng Cai, Junzhou Huang, Jing Xiao, Le Lu, Chien-Hung Liao, Adam P. Harrison:
Co-Heterogeneous and Adaptive Segmentation from Multi-Source and Multi-Phase CT Imaging Data: A Study on Pathological Liver and Lesion Segmentation. CoRR abs/2005.13201 (2020) - [i41]Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo:
CircleNet: Anchor-free Detection with Circle Representation. CoRR abs/2006.02474 (2020) - [i40]Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes B. Fogo, Yuankai Huo:
Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images. CoRR abs/2006.06038 (2020) - [i39]Yuankai Huo, Jinzheng Cai, Chi-Tung Cheng, Ashwin Raju, Ke Yan, Bennett A. Landman, Jing Xiao, Le Lu, Chien-Hung Liao, Adam P. Harrison:
Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning. CoRR abs/2006.15691 (2020) - [i38]Aadarsh Jha, Haichun Yang, Ruining Deng, Meghan E. Kapp, Agnes B. Fogo, Yuankai Huo:
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment. CoRR abs/2007.03593 (2020) - [i37]Zheyu Zhu, Yuzhe Lu, Ruining Deng, Haichun Yang, Agnes B. Fogo, Yuankai Huo:
EasierPath: An Open-source Tool for Human-in-the-loop Deep Learning of Renal Pathology. CoRR abs/2007.13952 (2020) - [i36]Mengyang Zhao, Aadarsh Jha, Quan Liu, Bryan A. Millis, Anita Mahadevan-Jansen, Le Lu, Bennett A. Landman, Matthew J. Tyskac, Yuankai Huo:
Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking. CoRR abs/2007.14283 (2020) - [i35]Bowen Li, Ke Yan, Dar-In Tai, Yuankai Huo, Le Lu, Jing Xiao, Adam P. Harrison:
Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization. CoRR abs/2008.03352 (2020) - [i34]Riqiang Gao, Yucheng Tang, Kaiwen Xu, Michael N. Kammer, Sanja L. Antic, Steve Deppen, Kim L. Sandler, Pierre P. Massion, Yuankai Huo, Bennett A. Landman:
Deep Multi-path Network Integrating Incomplete Biomarker and Chest CT Data for Evaluating Lung Cancer Risk. CoRR abs/2010.09524 (2020) - [i33]Quan Liu, Isabella M. Gaeta, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo:
GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects. CoRR abs/2010.11438 (2020) - [i32]Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo:
CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns. CoRR abs/2011.00794 (2020) - [i31]Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng, Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo:
ASIST: Annotation-free synthetic instance segmentation and tracking for microscope video analysis. CoRR abs/2011.01009 (2020) - [i30]Kaiwen Xu, Riqiang Gao, Mirza S. Khan, Shunxing Bao, Yucheng Tang, Steve A. Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Mattias P. Heinrich, Bennett A. Landman:
Development and Characterization of a Chest CT Atlas. CoRR abs/2012.03124 (2020) - [i29]Bolin Lai, Xiaoyu Bai, Yuhsuan Wu, Xiaoyun Zhou, Peng Wang, Jinzheng Cai, Yuankai Huo, Lingyun Huang, Yong Xia, Jing Xiao, Le Lu, Heping Hu, Adam P. Harrison:
Fully-Automated Liver Tumor Localization and Characterization from Multi-Phase MR Volumes Using Key-Slice ROI Parsing: A Physician-Inspired Approach. CoRR abs/2012.06964 (2020) - [i28]Ye Chen, Yuankai Huo:
Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis. CoRR abs/2012.12084 (2020) - [i27]Ho Hin Lee, Yucheng Tang, Shunxing Bao, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
RAP-Net: Coarse-to-Fine Multi-Organ Segmentation with Single Random Anatomical Prior. CoRR abs/2012.12425 (2020) - [i26]Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias P. Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman:
Multi-Contrast Computed Tomography Healthy Kidney Atlas. CoRR abs/2012.12432 (2020)
2010 – 2019
- 2019
- [j12]Hyeonsoo Moon, Yuankai Huo, Richard G. Abramson, Richard Alan Peters, Albert Assad, Tamara K. Moyo, Michael R. Savona, Bennett A. Landman:
Acceleration of spleen segmentation with end-to-end deep learning method and automated pipeline. Comput. Biol. Medicine 107: 109-117 (2019) - [j11]Ana Gainaru, Hongyang Sun, Guillaume Aupy, Yuankai Huo, Bennett A. Landman, Padma Raghavan:
On-the-fly scheduling versus reservation-based scheduling for unpredictable workflows. Int. J. High Perform. Comput. Appl. 33(6) (2019) - [j10]Owen A. Williams, Yang An, Lori L. Beason-Held, Yuankai Huo, Luigi Ferrucci, Bennett A. Landman, Susan M. Resnick:
Vascular burden and APOE ε4 are associated with white matter microstructural decline in cognitively normal older adults. NeuroImage 188: 572-583 (2019) - [j9]Yuankai Huo, Zhoubing Xu, Yunxi Xiong, Katherine Aboud, Prasanna Parvathaneni, Shunxing Bao, Camilo Bermudez, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
3D whole brain segmentation using spatially localized atlas network tiles. NeuroImage 194: 105-119 (2019) - [j8]Yuankai Huo, Zhoubing Xu, Hyeonsoo Moon, Shunxing Bao, Albert Assad, Tamara K. Moyo, Michael R. Savona, Richard G. Abramson, Bennett A. Landman:
SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth. IEEE Trans. Medical Imaging 38(4): 1016-1025 (2019) - [j7]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Hyeonsoo Moon, Prasanna Parvathaneni, Tamara K. Moyo, Michael R. Savona, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Splenomegaly Segmentation on Multi-Modal MRI Using Deep Convolutional Networks. IEEE Trans. Medical Imaging 38(5): 1185-1196 (2019) - [c29]Vishwesh Nath, Kurt G. Schilling, Samuel Remedios, Roza G. Bayrak, Yurui Gao, Justin A. Blaber, Yuankai Huo, Bennett A. Landman, Adam W. Anderson:
Learning 3D White Matter Microstructure from 2D Histology. ISBI 2019: 186-190 - [c28]Riqiang Gao, Yuankai Huo, Shunxing Bao, Yucheng Tang, Sanja L. Antic, Emily S. Epstein, Aneri B. Balar, Steve Deppen, Alexis B. Paulson, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Distanced LSTM: Time-Distanced Gates in Long Short-Term Memory Models for Lung Cancer Detection. MLMI@MICCAI 2019: 310-318 - [c27]Prasanna Parvathaneni, Shunxing Bao, Vishwesh Nath, Neil D. Woodward, Daniel O. Claassen, Carissa J. Cascio, David H. Zald, Yuankai Huo, Bennett A. Landman, Ilwoo Lyu:
Cortical Surface Parcellation Using Spherical Convolutional Neural Networks. MICCAI (3) 2019: 501-509 - [c26]Vishwesh Nath, Ilwoo Lyu, Kurt G. Schilling, Prasanna Parvathaneni, Colin B. Hansen, Yuankai Huo, Vaibhav A. Janve, Yurui Gao, Iwona Stepniewska, Adam W. Anderson, Bennett A. Landman:
Enabling Multi-shell b-Value Generalizability of Data-Driven Diffusion Models with Deep SHORE. MICCAI (3) 2019: 573-581 - [c25]Vishwesh Nath, Samuel Remedios, Prasanna Parvathaneni, Colin B. Hansen, Roza G. Bayrak, Camilo Bermudez, Justin A. Blaber, Kurt G. Schilling, Vaibhav A. Janve, Yurui Gao, Yuankai Huo, Ilwoo Lyu, Owen A. Williams, Susan M. Resnick, Lori L. Beason-Held, Baxter P. Rogers, Iwona Stepniewska, Adam W. Anderson, Bennett A. Landman:
Harmonizing 1.5T/3T diffusion weighted MRI through development of deep learning stabilized microarchitecture estimators. Image Processing 2019: 109490O - [c24]Jiachen Wang, Riqiang Gao, Yuankai Huo, Shunxing Bao, Yunxi Xiong, Sanja L. Antic, Travis J. Osterman, Pierre P. Massion, Bennett A. Landman:
Lung cancer detection using co-learning from chest CT images and clinical demographics. Image Processing 2019: 109491G - [c23]Cailey I. Kerley, Yuankai Huo, Shikha Chaganti, Shunxing Bao, Mayur B. Patel, Bennett A. Landman:
Montage based 3D medical image retrieval from traumatic brain injury cohort using deep convolutional neural network. Image Processing 2019: 109492U - [c22]Yunxi Xiong, Yuankai Huo, Jiachen Wang, Larry Taylor Davis, Maureen McHugo, Bennett A. Landman:
Reproducibility evaluation of SLANT whole brain segmentation across clinical magnetic resonance imaging protocols. Image Processing 2019: 109492V - [c21]Yucheng Tang, Yuankai Huo, Yunxi Xiong, Hyeonsoo Moon, Albert Assad, Tamara K. Moyo, Michael R. Savona, Richard G. Abramson, Bennett A. Landman:
Improving splenomegaly segmentation by learning from heterogeneous multi-source labels. Image Processing 2019: 1094908 - [c20]Yuankai Huo, James G. Terry, Jiachen Wang, Vishwesh Nath, Camilo Bermudez, Shunxing Bao, Prasanna Parvathaneni, John Jeffrey Carr, Bennett A. Landman:
Coronary calcium detection using 3D attention identical dual deep network based on weakly supervised learning. Image Processing 2019: 1094917 - [c19]Camilo Bermudez, William Rodriguez, Yuankai Huo, Allison E. Hainline, Rui Li, Robert Shults, Pierre D. D'Haese, Peter E. Konrad, Benoit M. Dawant, Bennett A. Landman:
Towards machine learning prediction of deep brain stimulation (DBS) intra-operative efficacy maps. Image Processing 2019: 1094922 - [i25]Yunxi Xiong, Yuankai Huo, Jiachen Wang, Larry Taylor Davis, Maureen McHugo, Bennett A. Landman:
Reproducibility Evaluation of SLANT Whole Brain Segmentation Across Clinical Magnetic Resonance Imaging Protocols. CoRR abs/1901.02040 (2019) - [i24]Jiachen Wang, Riqiang Gao, Yuankai Huo, Shunxing Bao, Yunxi Xiong, Sanja Antic, Travis Osterman, Pierre P. Massion, Bennett A. Landman:
Lung Cancer Detection using Co-learning from Chest CT Images and Clinical Demographics. CoRR abs/1902.08236 (2019) - [i23]Yuankai Huo, Zhoubing Xu, Yunxi Xiong, Katherine Aboud, Prasanna Parvathaneni, Shunxing Bao, Camilo Bermudez, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
3D Whole Brain Segmentation using Spatially Localized Atlas Network Tiles. CoRR abs/1903.12152 (2019) - [i22]Yuankai Huo, James G. Terry, Jiachen Wang, Sangeeta Nair, Thomas A. Lasko, Barry I. Freedman, John Jeffrey Carr, Bennett A. Landman:
Fully Automatic Liver Attenuation Estimation Combing CNN Segmentation and Morphological Operations. CoRR abs/1906.09549 (2019) - [i21]Vishwesh Nath, Ilwoo Lyu, Kurt G. Schilling, Prasanna Parvathaneni, Colin B. Hansen, Yucheng Tang, Yuankai Huo, Vaibhav A. Janve, Yurui Gao, Iwona Stepniewska, Adam W. Anderson, Bennett A. Landman:
Enabling Multi-Shell b-Value Generalizability of Data-Driven Diffusion Models with Deep SHORE. CoRR abs/1907.06319 (2019) - [i20]Camilo Bermudez, Justin A. Blaber, Samuel W. Remedios, Jess E. Reynolds, Catherine Lebel, Maureen McHugo, Stephan Heckers, Yuankai Huo, Bennett A. Landman:
Generalizing Deep Whole Brain Segmentation for Pediatric and Post-Contrast MRI with Augmented Transfer Learning. CoRR abs/1908.04702 (2019) - [i19]Riqiang Gao, Yuankai Huo, Shunxing Bao, Yucheng Tang, Sanja L. Antic, Emily S. Epstein, Aneri B. Balar, Steve Deppen, Alexis B. Paulson, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Distanced LSTM: Time-Distanced Gates in Long Short-Term Memory Models for Lung Cancer Detection. CoRR abs/1909.05321 (2019) - [i18]Ho Hin Lee, Yucheng Tang, Olivia Tang, Yuchen Xu, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Semi-Supervised Multi-Organ Segmentation through Quality Assurance Supervision. CoRR abs/1911.05113 (2019) - [i17]Riqiang Gao, Lingfeng Li, Yucheng Tang, Sanja L. Antic, Alexis B. Paulson, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Deep Multi-task Prediction of Lung Cancer and Cancer-free Progression from Censored Heterogenous Clinical Imaging. CoRR abs/1911.05115 (2019) - [i16]Yucheng Tang, Ho Hin Lee, Yuchen Xu, Olivia Tang, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Camilo Bermudez, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman:
Contrast Phase Classification with a Generative Adversarial Network. CoRR abs/1911.06395 (2019) - [i15]Yuankai Huo, Yucheng Tang, Yunqiang Chen, Dashan Gao, Shizhong Han, Shunxing Bao, Smita De, James G. Terry, John Jeffrey Carr, Richard G. Abramson, Bennett A. Landman:
Stochastic tissue window normalization of deep learning on computed tomography. CoRR abs/1912.00420 (2019) - [i14]Yiyuan Yang, Riqiang Gao, Yucheng Tang, Sanja L. Antic, Steve Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman:
Internal-transfer Weighting of Multi-task Learning for Lung Cancer Detection. CoRR abs/1912.07167 (2019) - 2018
- [b1]Yuankai Huo:
Structural Medical Image Analyses using Consistent Volume and Surface Image Processing. Vanderbilt University, Nashville, Tennessee, USA, 2018 - [j6]Yuankai Huo, Justin A. Blaber, Stephen M. Damon, Brian D. Boyd, Shunxing Bao, Prasanna Parvathaneni, Camilo Bermudez, Shikha Chaganti, Vishwesh Nath, Jasmine M. Greer, Ilwoo Lyu, William R. French, Allen T. Newton, Baxter P. Rogers, Bennett A. Landman:
Towards Portable Large-Scale Image Processing with High-Performance Computing. J. Digit. Imaging 31(3): 304-314 (2018) - [j5]Yuankai Huo, Jiaqi Liu, Zhoubing Xu, Robert L. Harrigan, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Robust Multicontrast MRI Spleen Segmentation for Splenomegaly Using Multi-Atlas Segmentation. IEEE Trans. Biomed. Eng. 65(2): 336-343 (2018) - [c18]Shunxing Bao, Prasanna Parvathaneni, Yuankai Huo, Yogesh D. Barve, Andrew J. Plassard, Yuang Yao, Hongyang Sun, Ilwoo Lyu, David H. Zald, Bennett A. Landman, Aniruddha S. Gokhale:
Technology Enablers for Big Data, Multi-Stage Analysis in Medical Image Processing. IEEE BigData 2018: 1337-1346 - [c17]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Adversarial synthesis learning enables segmentation without target modality ground truth. ISBI 2018: 1217-1220 - [c16]Sandra González-Villà, Yuankai Huo, Arnau Oliver, Xavier Lladó, Bennett A. Landman:
Multi-atlas Parcellation in the Presence of Lesions: Application to Multiple Sclerosis. Patch-MI@MICCAI 2018: 104-113 - [c15]Yuankai Huo, Zhoubing Xu, Katherine Aboud, Prasanna Parvathaneni, Shunxing Bao, Camilo Bermudez, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
Spatially Localized Atlas Network Tiles Enables 3D Whole Brain Segmentation from Limited Data. MICCAI (3) 2018: 698-705 - [c14]Zhoubing Xu, Yuankai Huo, Jin Hyeong Park, Bennett A. Landman, Andy Milkowski, Sasa Grbic, Shaohua Kevin Zhou:
Less is More: Simultaneous View Classification and Landmark Detection for Abdominal Ultrasound Images. MICCAI (2) 2018: 711-719 - [c13]Meg F. Bobo, Shunxing Bao, Yuankai Huo, Yuang Yao, Jack Virostko, Andrew J. Plassard, Ilwoo Lyu, Albert Assad, Richard G. Abramson, Melissa A. Hilmes, Bennett A. Landman:
Fully convolutional neural networks improve abdominal organ segmentation. Image Processing 2018: 105742V - [c12]Prasanna Parvathaneni, Ilwoo Lyu, Yuankai Huo, Justin A. Blaber, Allison E. Hainline, Hakmook Kang, Neil D. Woodward, Bennett A. Landman:
Constructing statistically unbiased cortical surface templates using feature-space covariance. Image Processing 2018: 1057406 - [c11]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Andrew J. Plassard, Jiaqi Liu, Yuang Yao, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Splenomegaly segmentation using global convolutional kernels and conditional generative adversarial networks. Image Processing 2018: 1057409 - [c10]Yuankai Huo, Shunxing Bao, Prasanna Parvathaneni, Bennett A. Landman:
Improved stability of whole brain surface parcellation with multi-atlas segmentation. Image Processing 2018: 1057438 - [i13]Zhoubing Xu, Yuankai Huo, Jin Hyeong Park, Bennett A. Landman, Andy Milkowski, Sasa Grbic, Shaohua Kevin Zhou:
Less is More: Simultaneous View Classification and Landmark Detection for Abdominal Ultrasound Images. CoRR abs/1805.10376 (2018) - [i12]Yuankai Huo, Zhoubing Xu, Katherine Aboud, Prasanna Parvathaneni, Shunxing Bao, Camilo Bermudez, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
Spatially Localized Atlas Network Tiles Enables 3D Whole Brain Segmentation from Limited Data. CoRR abs/1806.00546 (2018) - [i11]Yuankai Huo, Katherine Swett, Susan M. Resnick, Laurie E. Cutting, Bennett A. Landman:
Data-driven Probabilistic Atlases Capture Whole-brain Individual Variation. CoRR abs/1806.02300 (2018) - [i10]Yuankai Huo, Zhoubing Xu, Hyeonsoo Moon, Shunxing Bao, Albert Assad, Tamara K. Moyo, Michael R. Savona, Richard G. Abramson, Bennett A. Landman:
SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth. CoRR abs/1810.06498 (2018) - [i9]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Hyeonsoo Moon, Prasanna Parvathaneni, Tamara K. Moyo, Michael R. Savona, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Splenomegaly Segmentation on Multi-modal MRI using Deep Convolutional Networks. CoRR abs/1811.04045 (2018) - [i8]Yuankai Huo, James G. Terry, Jiachen Wang, Vishwesh Nath, Camilo Bermudez, Shunxing Bao, Prasanna Parvathaneni, John Jeffrey Carr, Bennett A. Landman:
Coronary Calcium Detection using 3D Attention Identical Dual Deep Network Based on Weakly Supervised Learning. CoRR abs/1811.04289 (2018) - [i7]Camilo Bermudez, William Rodriguez, Yuankai Huo, Allison E. Hainline, Rui Li, Robert Shults, Pierre D. D'Haese, Peter E. Konrad, Benoit M. Dawant, Bennett A. Landman:
Towards Machine Learning Prediction of Deep Brain Stimulation (DBS) Intra-operative Efficacy Maps. CoRR abs/1811.10415 (2018) - [i6]Cailey I. Kerley, Yuankai Huo, Shikha Chaganti, Shunxing Bao, Mayur B. Patel, Bennett A. Landman:
Montage based 3D Medical Image Retrieval from Traumatic Brain Injury Cohort using Deep Convolutional Neural Network. CoRR abs/1812.04118 (2018) - 2017
- [j4]Susan Carnell, Leora Benson, Ku-Yu (Virginia) Chang, Zhishun Wang, Yuankai Huo, Allan Geliebter, Bradley S. Peterson:
Neural correlates of familial obesity risk and overweight in adolescence. NeuroImage 159: 236-247 (2017) - [c9]Yuankai Huo, Susan M. Resnick, Bennett A. Landman:
4D Multi-atlas Label Fusion Using Longitudinal Images. Patch-MI@MICCAI 2017: 3-11 - [c8]Peijun Hu, Yuankai Huo, Dexing Kong, John Jeffrey Carr, Richard G. Abramson, Katherine G. Hartley, Bennett A. Landman:
Automated Characterization of Body Composition and Frailty with Clinically Acquired CT. MSKI@MICCAI 2017: 25-35 - [c7]Yuankai Huo, Vaughn Braxton, S. Duke Herrell, Bennett A. Landman, Smita De:
Automated Characterization of Pyelocalyceal Anatomy Using CT Urograms to Aid in Management of Kidney Stones. CARE/CLIP@MICCAI 2017: 99-107 - [c6]Prasanna Parvathaneni, Baxter P. Rogers, Yuankai Huo, Kurt Schilling, Allison E. Hainline, Adam W. Anderson, Neil D. Woodward, Bennett A. Landman:
Gray Matter Surface Based Spatial Statistics (GS-BSS) in Diffusion Microstructure. MICCAI (1) 2017: 638-646 - [c5]Yuankai Huo, Jiaqi Liu, Zhoubing Xu, Robert L. Harrigan, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Multi-atlas segmentation enables robust multi-contrast MRI spleen segmentation for splenomegaly. Image Processing 2017: 101330A - [c4]Jiaqi Liu, Yuankai Huo, Zhoubing Xu, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Multi-atlas spleen segmentation on CT using adaptive context learning. Image Processing 2017: 1013309 - [i5]Yuankai Huo, Susan M. Resnick, Bennett A. Landman:
4D Multi-atlas Label Fusion using Longitudinal Images. CoRR abs/1708.08825 (2017) - [i4]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Camilo Bermudez, Andrew J. Plassard, Jiaqi Liu, Yuang Yao, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Splenomegaly Segmentation using Global Convolutional Kernels and Conditional Generative Adversarial Networks. CoRR abs/1712.00542 (2017) - [i3]Yuankai Huo, Shunxing Bao, Prasanna Parvathaneni, Bennett A. Landman:
Improved Stability of Whole Brain Surface Parcellation with Multi-Atlas Segmentation. CoRR abs/1712.00543 (2017) - [i2]Yuankai Huo, Zhoubing Xu, Shunxing Bao, Albert Assad, Richard G. Abramson, Bennett A. Landman:
Adversarial Synthesis Learning Enables Segmentation Without Target Modality Ground Truth. CoRR abs/1712.07695 (2017) - [i1]Shunxing Bao, Yuankai Huo, Prasanna Parvathaneni, Andrew J. Plassard, Camilo Bermudez, Yuang Yao, Ilwoo Lyu, Aniruddha S. Gokhale, Bennett A. Landman:
A Data Colocation Grid Framework for Big Data Medical Image Processing - Backend Design. CoRR abs/1712.08634 (2017) - 2016
- [j3]Yuankai Huo, Andrew J. Plassard, Aaron Carass, Susan M. Resnick, Dzung L. Pham, Jerry L. Prince, Bennett A. Landman:
Consistent cortical reconstruction and multi-atlas brain segmentation. NeuroImage 138: 197-210 (2016) - [c3]Shuihua Wang, Lenan Wu, Yuankai Huo, Xueyan Wu, Hainan Wang, Yudong Zhang:
Predict Two-Dimensional Protein Folding Based on Hydrophobic-Polar Lattice Model and Chaotic Clonal Genetic Algorithm. IDEAL 2016: 10-17 - [c2]Yuankai Huo, Katherine Aboud, Hakmook Kang, Laurie E. Cutting, Bennett A. Landman:
Mapping Lifetime Brain Volumetry with Covariate-Adjusted Restricted Cubic Spline Regression from Cross-Sectional Multi-site MRI. MICCAI (1) 2016: 81-88 - [c1]Yuankai Huo, Aaron Carass, Susan M. Resnick, Dzung L. Pham, Jerry L. Prince, Bennett A. Landman:
Combining multi-atlas segmentation with brain surface estimation. Image Processing 2016: 97840E - 2015
- [j2]Andrew J. Asman, Yuankai Huo, Andrew J. Plassard, Bennett A. Landman:
Multi-atlas learner fusion: An efficient segmentation approach for large-scale data. Medical Image Anal. 26(1): 82-91 (2015) - 2011
- [j1]Yudong Zhang, Shuihua Wang, Lenan Wu, Yuankai Huo:
Multi-channel Diffusion Tensor Image Registration via adaptive chaotic PSO. J. Comput. 6(4): 825-829 (2011)
Coauthor Index
Sanja Antic
aka: Sanja L. Antic
aka: Sanja L. Antic
[i152] [i146] [j37] [c105] [c104] [c103] [i140] [i139] [i133] [i129] [i127] [i121] [i118] [i117] [i115] [j32] [j30] [c100] [c98] [c95] [c94] [c93] [c92] [c89] [c88] [c87] [i108] [i106] [i104] [i103] [i99] [i96] [i95] [i93] [i92] [i91] [i87] [i86] [i85] [i84] [i83] [j27] [j25] [j24] [c84] [c82] [c80] [c79] [c77] [c73] [c69] [i79] [i76] [i72] [i71] [i70] [i69] [i68] [i67] [i65] [j20] [j16] [c63] [c61] [c60] [c58] [c56] [c51] [c47] [c46] [i58] [i56] [i52] [j14] [j13] [c42] [i32] [i30] [i27] [i26] [j9] [j8] [j7] [c28] [c27] [c24] [c23] [c20] [i24] [i23] [i19] [i15] [j6] [c18] [c17] [c15] [c13] [c11] [c10] [i12] [i10] [i9] [i8] [i6] [i4] [i3] [i2] [i1]
Leon Y. Cai
aka: Leon Yichen Cai
aka: Leon Yichen Cai
[i141] [j37] [c107] [c106] [c105] [c104] [c103] [i139] [i136] [i131] [i129] [i128] [i127] [i126] [i125] [i124] [i122] [i114] [i112] [j31] [c98] [c96] [c94] [c93] [c92] [c89] [c85] [i106] [i104] [i103] [i100] [i98] [i96] [i95] [i90] [i87] [c82] [c80] [c79] [c78] [c75] [c74] [c71] [c68] [c64] [i78] [i77] [i74] [i72] [i48]
[i151] [i147] [i146] [i145] [i144] [i143] [i142] [i141] [j37] [c107] [c106] [c105] [c104] [c103] [i139] [i136] [i135] [i131] [i130] [i129] [i128] [i127] [i126] [i125] [i124] [i122] [i120] [i116] [i114] [i113] [i112] [i111] [i110] [j31] [c98] [c96] [c94] [c93] [c92] [c91] [c90] [c89] [c85] [i106] [i104] [i103] [i102] [i101] [i100] [i98] [i96] [i95] [i93] [i92] [i91] [i90] [i89] [i88] [i87] [i86] [j22] [c81] [c80] [c79] [c78] [c76] [c75] [c74] [c72] [c70] [c67] [c64] [i78] [i74] [i72] [i71] [i66] [j21] [j15] [c58] [c57] [c56] [c55] [c49] [i64] [i62] [i59] [i57] [i56] [i51] [i48] [c41] [c39] [i41] [i40] [i38] [i37] [i32] [i31]
[i152] [i149] [i148] [i144] [j37] [c105] [c104] [i140] [i139] [i138] [i133] [i127] [i118] [i117] [i115] [j33] [j32] [j30] [j29] [c100] [c99] [c98] [c95] [c94] [c93] [c92] [c89] [c88] [c87] [c86] [c85] [i108] [i107] [i106] [i105] [i104] [i103] [i99] [i98] [i95] [i87] [i85] [i84] [i83] [i82] [j28] [j27] [j26] [j25] [j24] [j22] [c84] [c82] [c80] [c79] [c77] [c75] [c73] [c69] [c66] [c65] [i79] [i78] [i77] [i76] [i73] [i72] [i71] [i70] [i69] [i68] [i67] [i65] [j20] [j19] [j16] [c63] [c61] [c60] [c56] [c53] [c52] [c51] [c48] [c47] [c46] [i58] [i56] [i55] [i54] [i52] [i51] [i50] [j14] [j13] [c42] [c41] [c40] [c36] [c35] [c34] [c33] [c32] [c31] [c30] [i46] [i45] [i44] [i41] [i39] [i36] [i34] [i30] [i27] [i26] [j12] [j11] [j10] [j9] [j8] [j7] [c29] [c28] [c27] [c26] [c25] [c24] [c23] [c22] [c21] [c20] [c19] [i25] [i24] [i23] [i22] [i21] [i20] [i19] [i18] [i17] [i16] [i15] [i14] [j6] [j5] [c18] [c17] [c16] [c15] [c14] [c13] [c12] [c11] [c10] [i13] [i12] [i11] [i10] [i9] [i8] [i7] [i6] [c9] [c8] [c7] [c6] [c5] [c4] [i5] [i4] [i3] [i2] [i1] [j3] [c2] [c1] [j2]
[c105] [i140] [i139] [i138] [i127] [i115] [j32] [j30] [c100] [c95] [c94] [c93] [c88] [i108] [i99] [i94] [i85] [i84] [i83] [i82] [j27] [j25] [c79] [c77] [c73] [c69] [i79] [i76] [i70] [i69] [i68] [i67] [i65] [j20] [c63] [c61] [c60] [c53] [c51] [c47] [i58] [i55] [i52] [c42] [c34] [c33] [c32] [c30] [i46] [i45] [i27] [i26] [i18] [i16]
[i147] [i141] [c107] [c106] [c105] [c104] [c103] [i137] [i136] [i132] [i131] [i130] [i129] [i128] [i126] [i125] [i124] [i122] [i114] [i112] [i111] [j31] [c97] [c96] [c95] [i108] [i104] [i100] [i97] [i96] [i94] [i90] [i86] [i83] [c78] [c75] [c74] [c71] [c68] [c64] [i78] [i74] [i71] [j21] [j19] [c58] [c57] [c56] [c55] [c50] [i64] [i59] [i57] [i56] [i49] [i48] [i36] [i33] [i32] [i31]
Nancy Newlin
aka: Nancy R. Newlin
aka: Nancy R. Newlin
Lucas W. Remedios
aka: Lucas Walker Remedios
aka: Lucas Walker Remedios
Kurt Schilling
aka: Kurt G. Schilling
aka: Kurt G. Schilling
[e4] [i148] [i144] [i142] [j36] [c106] [c103] [i140] [i136] [i131] [i129] [i128] [i109] [j32] [j30] [c98] [c96] [c93] [c88] [c87] [i104] [i100] [i99] [i96] [i95] [i92] [i91] [i85] [i84] [j27] [j26] [c79] [c77] [c73] [c69] [c65] [i79] [i76] [i70] [i69] [i67] [j20] [j16] [c63] [c61] [c60] [c53] [c52] [c51] [c48] [c47] [c46] [i58] [i55] [i54] [i52] [j14] [j13] [c42] [c35] [c34] [c33] [c32] [c31] [c30] [i46] [i45] [i34] [i30] [i27] [i26] [c28] [c21] [i21] [i19] [i18] [i17] [i16] [i15] [i14]
Matthew J. Tyska
aka: Matthew J. Tyskac
aka: Matthew J. Tyskac
[i151] [i145] [i144] [i143] [i142] [c107] [c106] [c103] [i136] [i135] [i130] [i129] [i128] [i126] [i124] [i122] [i120] [i114] [i112] [i111] [i110] [i109] [j31] [c96] [c91] [i104] [i101] [i100] [i93] [i92] [i91] [i90] [i86] [j22] [c76] [c75] [c74] [c72] [c70] [i80] [i78] [i77] [i75] [i74] [i71] [i66] [j15] [c62] [c57] [c56] [c49] [i62] [i61] [i59] [i56] [i51] [i48] [c41] [c39] [i41] [i40] [i38] [i37]
[i151] [i149] [i148] [i146] [i144] [i142] [i141] [c107] [c106] [c104] [c103] [i136] [i133] [i131] [i130] [i129] [i128] [i126] [i125] [i124] [i122] [i117] [i116] [i114] [i113] [i112] [i111] [i110] [j35] [j31] [c99] [c85] [i107] [i104] [i98] [i96] [i90] [c78] [c70] [c64] [i80] [i75] [i74] [i71] [c57] [c56] [c55] [i59] [i57] [i56]
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