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2020 – today
- 2022
[j31]Joe Wandy
, Vinny Davies, Ross McBride, Stefan Weidt, Simon Rogers, Rónán Daly:
ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics. J. Open Source Softw. 7(71): 3990 (2022)- [j30]Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D. Otto:
Using topic modeling to detect cellular crosstalk in scRNA-seq. PLoS Comput. Biol. 18(4) (2022) - [i6]Emily R. Jefferson, James Liley, Maeve Malone, Smarti Reel, Alba Crespi-Boixader, Xaroula Kerasidou, Francesco Tava, Andrew McCarthy, Richard Preen, Alberto Blanco-Justicia, Esma Mansouri-Benssassi, Josep Domingo-Ferrer, Jillian Beggs, Antony Chuter, Christian Cole, Felix Ritchie, Angela Daly, Simon Rogers, Jim Smith:
GRAIMATTER Green Paper: Recommendations for disclosure control of trained Machine Learning (ML) models from Trusted Research Environments (TREs). CoRR abs/2211.01656 (2022) - [i5]Jim Smith, Richard John Preen, Andrew McCarthy, Alba Crespi-Boixader, James Liley, Simon Rogers:
Safe machine learning model release from Trusted Research Environments: The AI-SDC package. CoRR abs/2212.01233 (2022) - 2021
- [j29]Eric Bach, Simon Rogers, John Williamson, Juho Rousu:
Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification. Bioinform. 37(12): 1724-1731 (2021) - [j28]Mu Niu, Joe Wandy, Rónán Daly, Simon Rogers, Dirk Husmeier:
R package for statistical inference in dynamical systems using kernel based gradient matching: KGode. Comput. Stat. 36(1): 715-747 (2021) - [j27]Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, Faruk Diblen, Simon Rogers, Justin J. J. van der Hooft:
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. PLoS Comput. Biol. 17(2) (2021) - [j26]Simon Rogers, Virgilio L. Lew:
PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells. PLoS Comput. Biol. 17(3) (2021) - [j25]Simon Rogers, Virgilio L. Lew:
Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits. PLoS Comput. Biol. 17(3) (2021) - [j24]Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon Rogers:
Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions. PLoS Comput. Biol. 17(5) (2021) - [i4]Roderick Murray-Smith, John H. Williamson, Andrew Ramsay, Francesco Tonolini, Simon Rogers, Antoine Loriette:
Forward and Inverse models in HCI: Physical simulation and deep learning for inferring 3D finger pose. CoRR abs/2109.03366 (2021) - [i3]Esma Mansouri-Benssassi, Simon Rogers, Jim Smith, Felix Ritchie, Emily R. Jefferson:
Machine Learning Models Disclosure from Trusted Research Environments (TRE), Challenges and Opportunities. CoRR abs/2111.05628 (2021) - 2020
- [j23]Florian Huber, Stefan Verhoeven, Christiaan Meijer, Hanno Spreeuw, Efraín Castilla, Cunliang Geng, Justin J. J. van der Hooft, Simon Rogers, Adam Belloum, Faruk Diblen, Jurriaan H. Spaaks:
matchms - processing and similarity evaluation of mass spectrometry data. J. Open Source Softw. 5(52): 2411 (2020) - [j22]Francesca Young, Simon Rogers, David L. Robertson:
Predicting host taxonomic information from viral genomes: A comparison of feature representations. PLoS Comput. Biol. 16(5) (2020) - [j21]Kyle A. Simpson, Simon Rogers, Dimitrios P. Pezaros:
Per-Host DDoS Mitigation by Direct-Control Reinforcement Learning. IEEE Trans. Netw. Serv. Manag. 17(1): 103-117 (2020)
2010 – 2019
- 2018
- [j20]Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Jan Paul Siebert:
Autonomous Clothes Manipulation Using a Hierarchical Vision Architecture. IEEE Access 6: 76646-76662 (2018) - [j19]Joe Wandy, Yunfeng Zhu, Justin J. J. van der Hooft, Rónán Daly, Michael P. Barrett, Simon Rogers:
Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry. Bioinform. 34(2): 317-318 (2018) - [j18]Joe Wandy, Mu Niu, Diana Giurghita, Rónán Daly, Simon Rogers, Dirk Husmeier:
ShinyKGode: an interactive application for ODE parameter inference using gradient matching. Bioinform. 34(13): 2314-2315 (2018) - [j17]Mu Niu, Benn Macdonald, Simon Rogers, Maurizio Filippone, Dirk Husmeier:
Statistical inference in mechanistic models: time warping for improved gradient matching. Comput. Stat. 33(2): 1091-1123 (2018) - 2017
- [j16]Yoann Gloaguen, Fraser R. Morton, Rónán Daly, Ross Gurden, Simon Rogers, Joe Wandy, David Wilson, Michael P. Barrett, Karl E. V. Burgess:
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data. Bioinform. 33(24): 4007-4009 (2017) - [c23]Mohammad Faizuddin Mohd Noor, Simon Rogers, John Williamson:
Pre-interaction identification by dynamic grip classification. IMCOM 2017: 94 - [c22]Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Rustam Stolkin, J. Paul Siebert:
Single-shot clothing category recognition in free-configurations with application to autonomous clothes sorting. IROS 2017: 6699-6706 - [i2]Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Rustam Stolkin, J. Paul Siebert:
Single-Shot Clothing Category Recognition in Free-Configurations with Application to Autonomous Clothes Sorting. CoRR abs/1707.07157 (2017) - 2016
- [c21]Mohammad Faizuddin Mohd Noor, Simon Rogers, John Williamson:
Detecting Swipe Errors on Touchscreens using Grip Modulation. CHI 2016: 1909-1920 - [c20]Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier:
Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching. CIBB 2016: 145-159 - [c19]Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier:
Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching. ICML 2016: 1699-1707 - [c18]Li Sun, Simon Rogers, Gerardo Aragon-Camarasa, J. Paul Siebert:
Recognising the clothing categories from free-configuration using Gaussian-Process-based interactive perception. ICRA 2016: 2464-2470 - [i1]Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, J. Paul Siebert:
Robot Vision Architecture for Autonomous Clothes Manipulation. CoRR abs/1610.05824 (2016) - 2015
- [j15]Joe Wandy, Rónán Daly, Rainer Breitling, Simon Rogers:
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets. Bioinform. 31(12): 1999-2006 (2015) - [c17]Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, J. Paul Siebert:
Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening. ICRA 2015: 185-192 - 2014
- [j14]Tommi Suvitaival, Simon Rogers, Samuel Kaski:
Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations. Bioinform. 30(17): 461-467 (2014) - [j13]Rónán Daly, Simon Rogers, Joe Wandy, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling:
MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach. Bioinform. 30(19): 2764-2771 (2014) - [j12]Tommi Suvitaival, Simon Rogers, Samuel Kaski:
Stronger findings from mass spectral data through multi-peak modeling. BMC Bioinform. 15: 208 (2014) - [c16]Mohammad Faizuddin Mohd Noor, Andrew Ramsay, Stephen Hughes, Simon Rogers, John Williamson, Roderick Murray-Smith:
28 frames later: predicting screen touches from back-of-device grip changes. CHI 2014: 2005-2008 - [c15]Daryl Weir, Henning Pohl, Simon Rogers, Keith Vertanen, Per Ola Kristensson:
Uncertain text entry on mobile devices. CHI 2014: 2307-2316 - [c14]Edwin Thuma, Simon Rogers, Iadh Ounis:
Detecting Missing Content Queries in an SMS-Based HIV/AIDS FAQ Retrieval System. ECIR 2014: 247-259 - 2013
- [j11]Simon Rogers, Derek H. Sleeman, John Kinsella:
Investigating the Disagreement Between Clinicians' Ratings of Patients in ICUs. IEEE J. Biomed. Health Informatics 17(4): 843-852 (2013) - [c13]Frank Dondelinger, Dirk Husmeier, Simon Rogers, Maurizio Filippone:
ODE parameter inference using adaptive gradient matching with Gaussian processes. AISTATS 2013: 216-228 - [c12]Daniel Buschek, Simon Rogers, Roderick Murray-Smith:
User-specific touch models in a cross-device context. Mobile HCI 2013: 382-391 - [c11]Daryl Weir, Daniel Buschek, Simon Rogers:
Sparse selection of training data for touch correction systems. Mobile HCI 2013: 404-407 - [c10]Edwin Thuma, Simon Rogers, Iadh Ounis:
Exploiting Query Logs and Field-Based Models to Address Term Mismatch in an HIV/AIDS FAQ Retrieval System. NLDB 2013: 77-89 - [c9]Edwin Thuma, Simon Rogers, Iadh Ounis:
Evaluating bad query abandonment in an iterative SMS-based FAQ retrieval system. OAIR 2013: 117-120 - [c8]Li Sun, Gerardo Aragon-Camarasa, W. Paul Cockshott, Simon Rogers, J. Paul Siebert:
A Heuristic-Based Approach for Flattening Wrinkled Clothes. TAROS 2013: 148-160 - 2012
- [c7]Daryl Weir, Simon Rogers, Roderick Murray-Smith, Markus Löchtefeld:
A user-specific machine learning approach for improving touch accuracy on mobile devices. UIST 2012: 465-476 - 2011
- [b1]Simon Rogers, Mark A. Girolami:
A First Course in Machine Learning. Chapman and Hall / CRC machine learning and pattern recognition series, CRC Press 2011, ISBN 978-1-43-982414-6, pp. I-XX, 1-285 - [j10]Tamara Polajnar, Simon Rogers, Mark A. Girolami:
Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation. Int. J. Data Min. Bioinform. 5(1): 52-72 (2011) - [c6]Simon Rogers, John Williamson, Craig D. Stewart, Roderick Murray-Smith:
AnglePose: robust, precise capacitive touch tracking via 3d orientation estimation. CHI 2011: 2575-2584 - 2010
- [j9]Simon Rogers, Arto Klami, Janne Sinkkonen, Mark A. Girolami, Samuel Kaski:
Infinite factorization of multiple non-parametric views. Mach. Learn. 79(1-2): 201-226 (2010) - [j8]Simon Rogers, Mark A. Girolami, Tamara Polajnar:
Semi-parametric analysis of multi-rater data. Stat. Comput. 20(3): 317-334 (2010) - [c5]Simon Rogers, John Williamson, Craig D. Stewart, Roderick Murray-Smith:
FingerCloud: uncertainty and autonomy handover incapacitive sensing. CHI 2010: 577-580
2000 – 2009
- 2009
- [j7]Simon Rogers, Richard A. Scheltema, Mark A. Girolami, Rainer Breitling:
Probabilistic assignment of formulas to mass peaks in metabolomics experiments. Bioinform. 25(4): 512-518 (2009) - [c4]Tamara Polajnar, Simon Rogers, Mark A. Girolami:
Classification of Protein Interaction Sentences via Gaussian Processes. PRIB 2009: 282-292 - 2008
- [j6]Simon Rogers, Mark A. Girolami, Walter Kolch, Katrina M. Waters, Tao Liu, Brian Thrall, H. Steven Wiley:
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. Bioinform. 24(24): 2894-2900 (2008) - 2007
- [j5]Simon Rogers, Raya Khanin, Mark A. Girolami:
Bayesian model-based inference of transcription factor activity. BMC Bioinform. 8(S-2) (2007) - [c3]Simon Rogers, Mark A. Girolami:
Multi-class Semi-supervised Learning with the e-truncated Multinomial Probit Gaussian Process. Gaussian Processes in Practice 2007: 17-32 - 2006
- [j4]Mark A. Girolami, Simon Rogers:
Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors. Neural Comput. 18(8): 1790-1817 (2006) - 2005
- [j3]Simon Rogers, Mark A. Girolami:
A Bayesian regression approach to the inference of regulatory networks from gene expression data. Bioinform. 21(14): 3131-3137 (2005) - [j2]Simon Rogers, Mark A. Girolami, Colin Campbell, Rainer Breitling:
The Latent Process Decomposition of cDNA Microarray Data Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 2(2): 143-156 (2005) - [c2]Simon Rogers, Mark A. Girolami, Ronald Krebs, Harald Mischak:
Disease Classification from Capillary Electrophoresis: Mass Spectrometry. ICAPR (1) 2005: 183-191 - [c1]Mark A. Girolami, Simon Rogers:
Hierarchic Bayesian models for kernel learning. ICML 2005: 241-248 - 2003
- [j1]Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna Engle, Colin Campbell, Todd R. Golub, Jill P. Mesirov:
Estimating Dataset Size Requirements for Classifying DNA Microarray Data. J. Comput. Biol. 10(2): 119-142 (2003)
Coauthor Index
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