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Christoph Kaleta
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2020 – today
- 2021
- [j20]Jan Ewald
, Flora Rivieccio
, Lukás Radosa, Stefan Schuster
, Axel A. Brakhage
, Christoph Kaleta
:
Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis. PLoS Comput. Biol. 17(12) (2021)
2010 – 2019
- 2017
- [j19]Jan Ewald
, Martin Bartl, Thomas Dandekar
, Christoph Kaleta
:
Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. PLoS Comput. Biol. 13(2) (2017) - [j18]Eugen Bauer, Johannes Zimmermann
, Federico Baldini, Ines Thiele
, Christoph Kaleta
:
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities. PLoS Comput. Biol. 13(5) (2017) - 2016
- [j17]Sebastian Germerodt, Katrin Bohl
, Anja Lück
, Samay Pande
, Anja Schröter, Christoph Kaleta
, Stefan Schuster
, Christian Kost
:
Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities. PLoS Comput. Biol. 12(6) (2016) - 2015
- [j16]Ralf Schmidt, Silvio Waschina
, Daniela Boettger-Schmidt, Christian Kost
, Christoph Kaleta
:
Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions. Bioinform. 31(3): 373-381 (2015) - [j15]Gundián M. de Hijas-Liste, Eva Balsa-Canto
, Jan Ewald
, Martin Bartl, Pu Li
, Julio R. Banga
, Christoph Kaleta
:
Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation. BMC Bioinform. 16: 163:1-163:13 (2015) - [i1]Stefan Schuster, Daniel Boley, Philip Möller, Christoph Kaleta:
A minimal model for explaining the higher ATP production in the Warburg effect. PeerJ Prepr. 3: e1309 (2015) - 2013
- [c4]Gundián M. de Hijas-Liste, Eva Balsa-Canto
, Julio R. Banga
, Christoph Kaleta:
Optimal regulatory programs for the control of metabolic pathways: The case of feedback inhibition. MED 2013: 237-242 - 2011
- [j14]Christoph Kaleta
, Luis F. de Figueiredo
, Ines Heiland
, Steffen Klamt
, Stefan Schuster:
Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis. Biosyst. 105(2): 107-108 (2011) - [j13]Stefan Schuster, Luis F. de Figueiredo
, Anja Schröter, Christoph Kaleta
:
Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach. Biosyst. 105(2): 147-153 (2011) - [j12]Anna-Katharina Göhler, Öznur Kökpinar, Wolfgang Schmidt-Heck, Robert Geffers, Reinhard Guthke, Ursula Rinas
, Stefan Schuster, Knut Jahreis, Christoph Kaleta:
More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli. BMC Syst. Biol. 5: 197 (2011) - [j11]Christoph Kaleta
, Luis F. de Figueiredo
, Sarah Werner, Reinhard Guthke, Michael Ristow
, Stefan Schuster:
In Silico Evidence for Gluconeogenesis from Fatty Acids in Humans. PLoS Comput. Biol. 7(7) (2011) - 2010
- [j10]Florian Centler, Christoph Kaleta
, Pietro Speroni di Fenizio
, Peter Dittrich:
A parallel algorithm to compute chemical organizations in biological networks. Bioinform. 26(14): 1788-1789 (2010) - [j9]Christoph Kaleta
, Anna-Katharina Göhler, Stefan Schuster, Knut Jahreis, Reinhard Guthke, Swetlana Nikolajewa:
Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. BMC Syst. Biol. 4: 116 (2010) - [c3]Katrin Bohl, Luis F. de Figueiredo, Oliver Hädicke, Steffen Klamt, Christian Kost, Stefan Schuster, Christoph Kaleta:
CASOP GS: Computing Intervention Strategies Targeted at Production Improvement in Genome-scale Metabolic Networks. GCB 2010: 71-80
2000 – 2009
- 2009
- [j8]Luis F. de Figueiredo
, Stefan Schuster, Christoph Kaleta, David A. Fell
:
Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinform. 25(1): 152-158 (2009) - [j7]Christoph Kaleta
, Stephan Richter, Peter Dittrich:
Using chemical organization theory for model checking. Bioinform. 25(15): 1915-1922 (2009) - [j6]Luis F. de Figueiredo
, Adam Podhorski
, Angel Rubio
, Christoph Kaleta
, John E. Beasley
, Stefan Schuster, Francisco J. Planes:
Computing the shortest elementary flux modes in genome-scale metabolic networks. Bioinform. 25(23): 3158-3165 (2009) - [j5]Luis F. de Figueiredo
, Stefan Schuster, Christoph Kaleta
, David A. Fell
:
Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinform. 25(24): 3330-3331 (2009) - [c2]Christoph Kaleta, Luis F. de Figueiredo, Jörn Behre, Stefan Schuster:
Computing Elementary Flux Modes in Genome-scale Metabolic Networks. GCB 2009: 179-189 - 2008
- [j4]Florian Centler, Christoph Kaleta
, Pietro Speroni di Fenizio
, Peter Dittrich:
Computing chemical organizations in biological networks. Bioinform. 24(14): 1611-1618 (2008) - [j3]Luis F. de Figueiredo
, Stefan Schuster, Christoph Kaleta
, David A. Fell
:
Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinform. 24(22): 2615-2621 (2008) - [j2]Christoph Kaleta
, Florian Centler, Pietro Speroni di Fenizio
, Peter Dittrich:
Phenotype prediction in regulated metabolic networks. BMC Syst. Biol. 2: 37 (2008) - [c1]Peter Dittrich, Florian Centler, Christoph Kaleta, Naoki Matsumaru, Pietro Speroni di Fenizio:
Chemical organizations in living systems. ALIFE 2008: 762 - 2007
- [j1]Roland Schwarz
, Chunguang Liang, Christoph Kaleta
, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, Gareth Griffiths, Stefan Schuster, Thomas Dandekar
:
Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinform. 8 (2007)
Coauthor Index
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