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ORCIDVincent Lacroix
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2020 – today
- 2023
[b2]Vincent Lacroix:
De novo analysis of splicing from RNA-seq data: models, algorithms and applications. Université Claude Bernard Lyon 1, France, 2023
2010 – 2019
- 2018
- [c11]Frédéric Badeau, Vincent Lacroix, Vincent Monfort, Laurent Voisin
, Christophe Métayer:
Modelling Dynamic Data Structures with the B Method. ABZ 2018: 420-424 - 2017
- [j11]Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. Algorithms Mol. Biol. 12(1): 2:1-2:19 (2017) - 2015
- [j10]Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs. Algorithms Mol. Biol. 10: 20 (2015) - 2014
- [j9]Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret, Vicente Acuña, Etienne Birmelé, Michele Borassi, Christophe Junot, Alberto Marchetti-Spaccamela, Andrea Marino, Leen Stougie, Fabien Jourdan, Pierluigi Crescenzi, Vincent Lacroix, Marie-France Sagot:
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure. Bioinform. 30(1): 61-70 (2014) - [c10]Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Navigating in a Sea of Repeats in RNA-seq without Drowning. WABI 2014: 82-96 - [i2]Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Navigating in a sea of repeats in RNA-seq without drowning. CoRR abs/1406.1022 (2014) - 2013
- [j8]Milana Frenkel-Morgenstern, Alessandro Gorohovski, Vincent Lacroix, Mark F. Rogers, Kristina Ibáñez, Cesar Boullosa, Eduardo Andrés León, Asa Ben-Hur, Alfonso Valencia:
ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data. Nucleic Acids Res. 41(Database-Issue): 142-151 (2013) - [c9]Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data. WABI 2013: 99-111 - [c8]Michele Borassi, Pierluigi Crescenzi, Vincent Lacroix, Andrea Marino, Marie-France Sagot, Paulo Vieira Milreu:
Telling Stories Fast. SEA 2013: 200-211 - [i1]Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data. CoRR abs/1307.7813 (2013) - 2012
- [j7]Gustavo Akio Tominaga Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo, Vincent Lacroix:
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data. BMC Bioinform. 13(S-6): S5 (2012) - [j6]Vicente Acuña, Etienne Birmelé, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix, Alberto Marchetti-Spaccamela, Andrea Marino, Paulo Vieira Milreu, Marie-France Sagot, Leen Stougie:
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets. Theor. Comput. Sci. 457: 1-9 (2012) - [c7]Alexandre S. Freire, Vicente Acuña, Pilu Crescenzi, Carlos Eduardo Ferreira, Vincent Lacroix, Paulo Vieira Milreu, Eduardo Moreno, Marie-France Sagot:
Minimum Ratio Cover of Matrix Columns by Extreme Rays of Its Induced Cone. ISCO 2012: 165-177 - [c6]Etienne Birmelé, Pierluigi Crescenzi, Rui A. Ferreira, Roberto Grossi, Vincent Lacroix, Andrea Marino, Nadia Pisanti, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot:
Efficient Bubble Enumeration in Directed Graphs. SPIRE 2012: 118-129 - 2010
- [c5]Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, Marie-France Sagot, Vincent Lacroix:
Identifying SNPs without a Reference Genome by Comparing Raw Reads. SPIRE 2010: 147-158 - [c4]Paulo Vieira Milreu, Vicente Acuña, Etienne Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, Vincent Lacroix:
Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms. WABI 2010: 226-237
2000 – 2009
- 2009
- [j5]Vicente Acuña, Flavio Chierichetti, Vincent Lacroix, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie:
Modes and cuts in metabolic networks: Complexity and algorithms. Biosyst. 95(1): 51-60 (2009) - [j4]Sophie Schbath, Vincent Lacroix, Marie-France Sagot:
Assessing the Exceptionality of Coloured Motifs in Networks. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - 2008
- [j3]Vincent Lacroix, Ludovic Cottret, Patricia Thébault, Marie-France Sagot:
An Introduction to Metabolic Networks and Their Structural Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 5(4): 594-617 (2008) - [c3]Vincent Lacroix, Michael Sammeth, Roderic Guigó, Anne Bergeron:
Exact Transcriptome Reconstruction from Short Sequence Reads. WABI 2008: 50-63 - 2007
- [b1]Vincent Lacroix:
Identification de motifs dans les réseaux métaboliques. (Motif identification in metabolic networks). Claude Bernard University Lyon 1, France, 2007 - [j2]Romain Bourqui, Ludovic Cottret, Vincent Lacroix, David Auber, Patrick Mary, Marie-France Sagot, Fabien Jourdan:
Metabolic network visualization eliminating node redundance and preserving metabolic pathways. BMC Syst. Biol. 1: 29 (2007) - 2006
- [j1]Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot:
Motif Search in Graphs: Application to Metabolic Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 3(4): 360-368 (2006) - [c2]Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan:
Metabolic network visualization using constraint planar graph drawing algorithm. IV 2006: 489-496 - 2005
- [c1]Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot:
Reaction Motifs in Metabolic Networks. WABI 2005: 178-191
Coauthor Index
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