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Samuel Kerrien
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2020 – today
- 2023
- [j10]Mohameth-François Sy
, Bogdan Roman, Samuel Kerrien, Didac Montero Mendez, Henry Genet, Wojciech Wajerowicz, Michaël Dupont, Ian Lavriushev, Julien Machon, Kenneth Pirman, Dhanesh Neela Mana, Natalia Stafeeva, Anna-Kristin Kaufmann, Huanxiang Lu, Jonathan Lurie, Pierre-Alexandre Fonta
, Alejandra Garcia Rojas Martinez, Alexander D. Ulbrich, Carolina Lindqvist, Silvia Jimenez, David J. Rotenberg, Henry Markram, Sean L. Hill:
Blue Brain Nexus: An open, secure, scalable system for knowledge graph management and data-driven science. Semantic Web 14(4): 697-727 (2023) - [c3]Cristina E. Gonzalez-Espinoza, Anna-Kristin Kaufmann, Eugenia Oshurko, Alejandra Garcia Rojas Martinez, Sarah Mouffok, Konstantinos Platis, Jonathan Lurie, Jayakrishnan Nair, Patrycja Lurie, Silvia Jimenez, Pierre-Alexandre Fonta, Huanxiang Lu, Nabil Alibou, Mohameth-François Sy, Bogdan Roman, Samuel Kerrien, Henry Markram, Sean L. Hill:
Blue Brain Knowledge Graph: Leveraging Semantic Web Technologies for Simulation Neuroscience. ISWC (Posters/Demos/Industry) 2023
2010 – 2019
- 2013
- [j9]Kim Van Roey, Sandra E. Orchard
, Samuel Kerrien
, Marine Dumousseau, Sylvie Ricard-Blum
, Henning Hermjakob
, Toby J. Gibson
:
Capturing cooperative interactions with the PSI-MI format. Database J. Biol. Databases Curation 2013 (2013) - [c2]Pablo Porras, Paola Roncaglia, Emily Dimmer, Jane Lomax, Rachael P. Huntley, Sandra E. Orchard, Marine Dumousseau, Samuel Kerrien, Henning Hermjakob:
The Apoptosis Gene Ontology project and the IntAct-Apoptosis dataset: updating the conceptual representation of apoptosis. IWBBIO 2013: 757-758 - 2012
- [j8]Samuel Kerrien
, Bruno Aranda, Lionel Breuza
, Alan J. Bridge
, Fiona Broackes-Carter, Carol Chen
, Margaret J. Duesbury
, Marine Dumousseau, Marc Feuermann, Ursula Hinz, Christine Jandrasits
, Rafael C. Jiménez
, Jyoti Khadake, Usha Mahadevan, Patrick Masson, Ivo Pedruzzi
, Eric Pfeiffenberger, Pablo Porras
, Arathi Raghunath, Bernd Roechert, Sandra E. Orchard
, Henning Hermjakob
:
The IntAct molecular interaction database in 2012. Nucleic Acids Res. 40(Database-Issue): 841-846 (2012) - 2010
- [j7]Bruno Aranda, P. Achuthan, Yasmin Alam-Faruque, Irina M. Armean
, Alan J. Bridge
, C. Derow, Marc Feuermann, A. T. Ghanbarian, Samuel Kerrien
, Jyoti Khadake, Jules Kerssemakers
, C. Leroy, Michael P. Menden
, Magali Michaut
, Luisa Montecchi-Palazzi, S. N. Neuhauser, Sandra E. Orchard
, V. Perreau, Bernd Roechert, K. van Eijk, Henning Hermjakob
:
The IntAct molecular interaction database in 2010. Nucleic Acids Res. 38(Database-Issue): 525-531 (2010) - [p1]Sandra E. Orchard
, Samuel Kerrien
:
Molecular Interactions and Data Standardisation. Proteome Bioinformatics 2010: 309-318
2000 – 2009
- 2008
- [j6]Tony Chiang, Nianhua Li, Sandra E. Orchard
, Samuel Kerrien
, Henning Hermjakob
, Robert Gentleman, Wolfgang Huber
:
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository. Bioinform. 24(8): 1100-1101 (2008) - [j5]Magali Michaut
, Samuel Kerrien
, Luisa Montecchi-Palazzi, Franck Chauvat
, Corinne Cassier-Chauvat
, Jean-Christophe Aude
, Pierre Legrain, Henning Hermjakob
:
InteroPORC: automated inference of highly conserved protein interaction networks. Bioinform. 24(14): 1625-1631 (2008) - [j4]Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Corinne Cassier-Chauvat, Franck Chauvat, Jean-Christophe Aude, Pierre Legrain, Henning Hermjakob:
InteroPORC: an automated tool to predict highly conserved protein interaction networks. BMC Bioinform. 9(S-10) (2008) - 2007
- [j3]Richard G. Côté, Philip Jones, Lennart Martens
, Samuel Kerrien
, Florian Reisinger, Quan Lin, Rasko Leinonen
, Rolf Apweiler
, Henning Hermjakob
:
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinform. 8 (2007) - [j2]Samuel Kerrien
, Yasmin Alam-Faruque, Bruno Aranda, I. Bancarz, Alan J. Bridge
, C. Derow, Emily Dimmer, Marc Feuermann, A. Friedrichsen, Rachael P. Huntley
, C. Kohler, Jyoti Khadake, C. Leroy, A. Liban, C. Lieftink, Luisa Montecchi-Palazzi, Sandra E. Orchard
, Judith E. Risse, Karine Robbe
, Bernd Roechert, David Thorneycroft, Y. Zhang, Rolf Apweiler
, Henning Hermjakob
:
IntAct - open source resource for molecular interaction data. Nucleic Acids Res. 35(Database-Issue): 561-565 (2007) - 2006
- [c1]Samuel Kerrien, Henning Hermjakob:
Development and implementation of the PSI MI standard for molecular interaction. WSC 2006: 1587-1594 - 2004
- [j1]Henning Hermjakob
, Luisa Montecchi-Palazzi, Chris Lewington
, Sugath Mudali, Samuel Kerrien
, Sandra E. Orchard
, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch
, Gianni Cesareni, David James Sherman, Rolf Apweiler
:
IntAct: an open source molecular interaction database. Nucleic Acids Res. 32(Database-Issue): 452-455 (2004)
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