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ORCIDJussi Tohka
Person information
- affiliation: University of Eastern Finland, Kuopio, Finland
- affiliation (former): Universidad Carlos III de Madrid, Spain
- affiliation (former): Tampere University of Technology, Finland
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2020 – today
- 2024
[j44]Vandad Imani, Carlos Sevilla-Salcedo, Elaheh Moradi, Vittorio Fortino, Jussi Tohka:
Multi-objective genetic algorithm for multi-view feature selection. Appl. Soft Comput. 167: 112332 (2024)- [j43]Juan Miguel Valverde
, Artem Shatillo, Jussi Tohka:
Sauron U-Net: Simple automated redundancy elimination in medical image segmentation via filter pruning. Neurocomputing 594: 127817 (2024) - [j42]Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra, Jussi Tohka:
No-Clean-Reference Image Super-Resolution: Application to Electron Microscopy. IEEE Trans. Computational Imaging 10: 1094-1110 (2024) - [c25]Vandad Imani, Elaheh Moradi, Carlos Sevilla-Salcedo, Vittorio Fortino, Jussi Tohka:
Optimizing Feature Selection for Binary Classification with Noisy Labels: A Genetic Algorithm Approach. ACR 2024: 392-403 - [i19]Vandad Imani, Elaheh Moradi, Carlos Sevilla-Salcedo, Vittorio Fortino, Jussi Tohka:
Optimizing Feature Selection for Binary Classification with Noisy Labels: A Genetic Algorithm Approach. CoRR abs/2401.06546 (2024) - [i18]Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra, Jussi Tohka:
No-Clean-Reference Image Super-Resolution: Application to Electron Microscopy. CoRR abs/2401.08115 (2024) - 2023
- [j41]Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Jussi Tohka:
Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks. Neuroinformatics 21(1): 57-70 (2023) - [j40]Juan Miguel Valverde, Jussi Tohka:
Region-wise loss for biomedical image segmentation. Pattern Recognit. 136: 109208 (2023) - [c24]Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra, Jussi Tohka:
Self-Supervised Super-Resolution Approach for Isotropic Reconstruction of 3D Electron Microscopy Images from Anisotropic Acquisition. EUVIP 2023: 1-6 - [i17]Vandad Imani, Carlos Sevilla-Salcedo, Vittorio Fortino, Jussi Tohka:
Multi-Objective Genetic Algorithm for Multi-View Feature Selection. CoRR abs/2305.18352 (2023) - [i16]Mohammad Khateri, Morteza Ghahremani, Alejandra Sierra, Jussi Tohka:
Self-Supervised Super-Resolution Approach for Isotropic Reconstruction of 3D Electron Microscopy Images from Anisotropic Acquisition. CoRR abs/2309.10646 (2023) - [i15]Olivier Rukundo, Andrea Behanova, Riccardo de Feo, Seppo Ronkko, Joni Oja, Jussi Tohka:
Convolutional Neural Networks for Automatic Detection of Intact Adenovirus from TEM Imaging with Debris, Broken and Artefacts Particles. CoRR abs/2310.19630 (2023) - 2022
- [j39]Andrea Behanova, Ali Abdollahzadeh, Ilya Belevich, Eija Jokitalo, Alejandra Sierra, Jussi Tohka:
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy. Comput. Methods Programs Biomed. 220: 106802 (2022) - [j38]Carlos Sevilla-Salcedo, Vandad Imani, Pablo M. Olmos, Vanessa Gómez-Verdejo, Jussi Tohka:
Multi-task longitudinal forecasting with missing values on Alzheimer's disease. Comput. Methods Programs Biomed. 226: 107056 (2022) - [i14]Carlos Sevilla-Salcedo, Vandad Imani, Pablo M. Olmos, Vanessa Gómez-Verdejo, Jussi Tohka:
Multi-task longitudinal forecasting with missing values on Alzheimer's Disease. CoRR abs/2201.05040 (2022) - [i13]Morteza Ghahremani, Mohammad Khateri, Alejandra Sierra, Jussi Tohka:
Adversarial Distortion Learning for Medical Image Denoising. CoRR abs/2204.14100 (2022) - [i12]Juan Miguel Valverde, Artem Shatillo, Jussi Tohka:
Sauron U-Net: Simple automated redundancy elimination in medical image segmentation via filter pruning. CoRR abs/2209.13590 (2022) - 2021
- [j37]Ali Abdollahzadeh, Alejandra Sierra, Jussi Tohka:
Cylindrical Shape Decomposition for 3D Segmentation of Tubular Objects. IEEE Access 9: 23979-23995 (2021) - [j36]Vandad Imani, Mithilesh Prakash, Marzieh Zare, Jussi Tohka:
Comparison of Single and Multitask Learning for Predicting Cognitive Decline Based on MRI Data. IEEE Access 9: 154275-154291 (2021) - [j35]Jussi Tohka, Mark J. van Gils:
Evaluation of machine learning algorithms for health and wellness applications: A tutorial. Comput. Biol. Medicine 132: 104324 (2021) - [j34]Juan Miguel Valverde, Vandad Imani, Ali Abdollahzadeh, Riccardo de Feo, Mithilesh Prakash, Robert Ciszek, Jussi Tohka:
Transfer Learning in Magnetic Resonance Brain Imaging: A Systematic Review. J. Imaging 7(4): 66 (2021) - [j33]Riccardo de Feo, Artem Shatillo, Alejandra Sierra, Juan Miguel Valverde, Olli Gröhn, Federico Giove, Jussi Tohka:
Automated joint skull-stripping and segmentation with Multi-Task U-Net in large mouse brain MRI databases. NeuroImage 229: 117734 (2021) - [j32]Kimberley M. Timmins, Irene C. van der Schaaf, Edwin Bennink, Ynte M. Ruigrok, Xingle An, Michael Baumgartner, Pascal Bourdon, Riccardo de Feo, Tommaso Di Noto, Florian Dubost, Augusto Fava-Sanches, Xue Feng, Corentin Giroud, Inteneural Group, Minghui Hu, Paul F. Jaeger, Juhana Kaiponen, Michal Klimont, Yuexiang Li, Hongwei Li, Yi Lin, Timo Loehr, Jun Ma, Klaus H. Maier-Hein, Guillaume Marie, Bjoern H. Menze, Jonas Richiardi, Saifeddine Rjiba, Dhaval Shah, Suprosanna Shit, Jussi Tohka, Thierry Urruty, Urszula Walinska, Xiaoping Yang, Yunqiao Yang, Yin Yin, Birgitta K. Velthuis, Hugo J. Kuijf:
Comparing methods of detecting and segmenting unruptured intracranial aneurysms on TOF-MRAS: The ADAM challenge. NeuroImage 238: 118216 (2021) - [i11]Juan Miguel Valverde, Vandad Imani, Ali Abdollahzadeh, Riccardo de Feo, Mithilesh Prakash, Robert Ciszek, Jussi Tohka:
Transfer Learning in Magnetic Resonance Brain Imaging: a Systematic Review. CoRR abs/2102.01530 (2021) - [i10]Juan Miguel Valverde, Jussi Tohka:
Region-wise Loss for Biomedical Image Segmentation. CoRR abs/2108.01405 (2021) - [i9]Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Jussi Tohka:
Automatic hemisphere segmentation in rodent MRI with lesions. CoRR abs/2108.01941 (2021) - [i8]Vandad Imani, Mithilesh Prakash, Marzieh Zare, Jussi Tohka:
Comparison of single and multitask learning for predicting cognitive decline based on MRI data. CoRR abs/2109.10266 (2021) - [i7]Andrea Behanova, Ali Abdollahzadeh, Ilya Belevich, Eija Jokitalo, Alejandra Sierra, Jussi Tohka:
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy. CoRR abs/2112.06476 (2021) - 2020
- [j31]Juha Salmi, Mostafa Metwaly, Jussi Tohka, Kimmo Alho, Sami Leppämäki, Pekka Tani, Anniina Koski, Tamara Vanderwal, Matti Laine:
ADHD desynchronizes brain activity during watching a distracted multi-talker conversation. NeuroImage 216: 116352 (2020) - [j30]Carlos Sevilla-Salcedo, Vanessa Gómez-Verdejo, Jussi Tohka:
Regularized Bagged Canonical Component Analysis for Multiclass Learning in Brain Imaging. Neuroinformatics 18(4): 641-659 (2020) - [i6]Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Olli Gröhn, Alejandra Sierra, Jussi Tohka:
RatLesNetv2: A Fully Convolutional Network for Rodent Brain Lesion Segmentation. CoRR abs/2001.09138 (2020) - [i5]Jussi Tohka, Mark J. van Gils:
Evaluation of machine learning algorithms for Health and Wellness applications: a tutorial. CoRR abs/2008.13690 (2020)
2010 – 2019
- 2019
- [j29]John D. Lewis, Vladimir S. Fonov, D. Louis Collins, Alan C. Evans, Jussi Tohka:
Cortical and subcortical T1 white/gray contrast, chronological age, and cognitive performance. NeuroImage 196: 276-288 (2019) - [j28]Vanessa Gómez-Verdejo, Emilio Parrado-Hernández, Jussi Tohka:
Sign-Consistency Based Variable Importance for Machine Learning in Brain Imaging. Neuroinformatics 17(4): 593-609 (2019) - [j27]Syeda Sakira Hassan, Heikki Huttunen, Jari Niemi, Jussi Tohka:
Bayesian receiver operating characteristic metric for linear classifiers. Pattern Recognit. Lett. 128: 52-59 (2019) - [c23]Juan Miguel Valverde, Vandad Imani, John D. Lewis, Jussi Tohka:
Predicting Intelligence Based on Cortical WM/GM Contrast, Cortical Thickness and Volumetry. ABCD-NP@MICCAI 2019: 57-65 - [c22]Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Olli Gröhn, Alejandra Sierra, Jussi Tohka:
Automatic Rodent Brain MRI Lesion Segmentation with Fully Convolutional Networks. MLMI@MICCAI 2019: 195-202 - [i4]Juan Miguel Valverde, Artem Shatillo, Riccardo de Feo, Olli Gröhn, Alejandra Sierra, Jussi Tohka:
Automatic Rodent Brain MRI Lesion Segmentation with Fully Convolutional Networks. CoRR abs/1908.08746 (2019) - [i3]Syeda Sakira Hassan, Heikki Huttunen, Jari Niemi, Jussi Tohka:
Bayesian Receiver Operating Characteristic Metric for Linear Classifiers. CoRR abs/1908.08771 (2019) - [i2]Juan Miguel Valverde, Vandad Imani, John D. Lewis, Jussi Tohka:
Predicting intelligence based on cortical WM/GM contrast, cortical thickness and volumetry. CoRR abs/1909.05660 (2019) - [i1]Ali Abdollahzadeh, Alejandra Sierra, Jussi Tohka:
Cylindrical Shape Decomposition Algorithm for 3D Segmentation. CoRR abs/1911.00571 (2019) - 2018
- [j26]John D. Lewis, Alan C. Evans, Jussi Tohka:
T1 white/gray contrast as a predictor of chronological age, and an index of cognitive performance. NeuroImage 173: 341-350 (2018) - 2017
- [j25]Elaheh Moradi, Budhachandra S. Khundrakpam, John D. Lewis, Alan C. Evans, Jussi Tohka:
Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data. NeuroImage 144: 128-141 (2017) - 2016
- [j24]Jussi Tohka, Pierre Bellec, Christophe Grova, Anthonin Reilhac:
Simulation and Validation in Brain Image Analysis. Comput. Intell. Neurosci. 2016: 1041058:1-1041058:2 (2016) - [j23]Juha Pajula, Jussi Tohka:
How Many Is Enough? Effect of Sample Size in Inter-Subject Correlation Analysis of fMRI. Comput. Intell. Neurosci. 2016: 2094601:1-2094601:10 (2016) - [j22]Jussi Tohka, Elaheh Moradi, Heikki Huttunen:
Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia. Neuroinformatics 14(3): 279-296 (2016) - [c21]Vanessa Gómez-Verdejo, Jussi Tohka:
Voxel importance in classifier ensembles based on sign consistency patterns: application to sMRI. PRNI 2016: 1-4 - 2015
- [j21]Elaheh Moradi, Antonietta Pepe, Christian Gaser, Heikki Huttunen, Jussi Tohka:
Machine learning framework for early MRI-based Alzheimer's conversion prediction in MCI subjects. NeuroImage 104: 398-412 (2015) - [j20]Budhachandra S. Khundrakpam, Jussi Tohka, Alan C. Evans:
Prediction of brain maturity based on cortical thickness at different spatial resolutions. NeuroImage 111: 350-359 (2015) - [j19]Heikki Huttunen, Jussi Tohka:
Model selection for linear classifiers using Bayesian error estimation. Pattern Recognit. 48(11): 3739-3748 (2015) - 2014
- [j18]Alessandro Foi, Matteo Maggioni, Antonietta Pepe, Sylvia Rueda, J. Alison Noble, Aris T. Papageorghiou, Jussi Tohka:
Difference of Gaussians revolved along elliptical paths for ultrasound fetal head segmentation. Comput. Medical Imaging Graph. 38(8): 774-784 (2014) - [j17]Jukka-Pekka Kauppi, Juha Pajula, Jussi Tohka:
A versatile software package for inter-subject correlation based analyses of fMRI. Frontiers Neuroinformatics 8: 2 (2014) - [j16]Antonietta Pepe, Ivo D. Dinov, Jussi Tohka:
An automatic framework for quantitative validation of voxel based morphometry measures of anatomical brain asymmetry. NeuroImage 100: 444-459 (2014) - [j15]Sylvia Rueda, Sana Fathima, Caroline L. Knight, Mohammad Yaqub, Aris T. Papageorghiou, Bahbibi Rahmatullah, Alessandro Foi, Matteo Maggioni, Antonietta Pepe, Jussi Tohka, Richard V. Stebbing, John McManigle, Anca Ciurte, Xavier Bresson, Meritxell Bach Cuadra, Changming Sun, Gennady V. Ponomarev, Mikhail S. Gelfand, Marat D. Kazanov, Ching-Wei Wang, Hsiang-Chou Chen, Chun-Wei Peng, Chu-Mei Hung, J. Alison Noble:
Evaluation and Comparison of Current Fetal Ultrasound Image Segmentation Methods for Biometric Measurements: A Grand Challenge. IEEE Trans. Medical Imaging 33(4): 797-813 (2014) - [c20]Elaheh Moradi, Jussi Tohka, Christian Gaser:
Semi-supervised learning in MCI-to-ad conversion prediction - When is unlabeled data useful? PRNI 2014: 1-4 - 2013
- [j14]Heikki Huttunen, Tapio Manninen, Jukka-Pekka Kauppi, Jussi Tohka:
Mind reading with regularized multinomial logistic regression. Mach. Vis. Appl. 24(6): 1311-1325 (2013) - [c19]Heikki Huttunen, Tapio Manninen, Jussi Tohka:
Bayesian error estimation and model selection in sparse logistic regression. MLSP 2013: 1-6 - [c18]Jussi Tohka:
FAST-PVE: Extremely Fast Markov Random Field Based Brain MRI Tissue Classification. SCIA 2013: 266-276 - 2012
- [j13]Jussi Tohka, Ulla Ruotsalainen:
Imaging brain change across different time scales. Frontiers Neuroinformatics 6: 29 (2012) - [c17]Antonietta Pepe, Jussi Tohka:
3D Bending of Surfaces and Volumes with an Application to Brain Torque Modeling. ICPRAM (2) 2012: 411-418 - [c16]Antonietta Pepe, Laura Brandolini, Marco Piastra, Juha Koikkalainen, Jarmo Hietala, Jussi Tohka:
Simplified Reeb Graph as Effective Shape Descriptor for the Striatum. MeshMed 2012: 134-146 - 2011
- [c15]Jukka-Pekka Kauppi, Heikki Huttunen, Heikki Korkala, Iiro P. Jääskeläinen, Mikko Sams, Jussi Tohka:
Face Prediction from fMRI Data during Movie Stimulus: Strategies for Feature Selection. ICANN (2) 2011: 189-196 - 2010
- [j12]Jukka-Pekka Kauppi, Iiro P. Jääskeläinen, Mikko Sams, Jussi Tohka:
Inter-subject correlation of brain hemodynamic responses during watching a movie: localization in space and frequency. Frontiers Neuroinformatics 4: 5 (2010) - [j11]Lu Zhao, Ulla Ruotsalainen, Jussi Hirvonen, Jarmo Hietala, Jussi Tohka:
Automatic cerebral and cerebellar hemisphere segmentation in 3D MRI: Adaptive disconnection algorithm. Medical Image Anal. 14(3): 360-372 (2010) - [j10]José V. Manjón, Jussi Tohka, Montserrat Robles:
Improved estimates of partial volume coefficients from noisy brain MRI using spatial context. NeuroImage 53(2): 480-490 (2010)
2000 – 2009
- 2009
- [j9]Ricardo J. P. C. Farinha, Ulla Ruotsalainen, Jussi Hirvonen, Lauri Tuominen, Jarmo Hietala, José M. Fonseca, Jussi Tohka:
Segmentation of Striatal Brain Structures from High Resolution PET Images. Int. J. Biomed. Imaging 2009: 156234:1-156234:12 (2009) - [c14]Harri Pölönen, Jussi Tohka, Ulla Ruotsalainen:
Automatic intensity quantification of fluorescence targets from microscope images with maximum likelihood estimation. EUSIPCO 2009: 1072-1076 - [c13]Lu Zhao, Jarmo Hietala, Jussi Tohka:
Shape Analysis of Human Brain Interhemispheric Fissure Bending in MRI. MICCAI (1) 2009: 216-223 - [c12]Harri Pölönen, Jussi Tohka, Ulla Ruotsalainen:
Automatic Quantification of Fluorescence from Clustered Targets in Microscope Images. SCIA 2009: 667-675 - 2008
- [j8]Jussi Tohka, Karin Foerde, Adam R. Aron, Sabrina M. Tom, Arthur W. Toga, Russell A. Poldrack:
Automatic independent component labeling for artifact removal in fMRI. NeuroImage 39(3): 1227-1245 (2008) - [j7]Jussi Tohka, Anthonin Reilhac:
Deconvolution-based partial volume correction in Raclopride-PET and Monte Carlo comparison to MR-based method. NeuroImage 39(4): 1570-1584 (2008) - 2007
- [j6]Jussi Tohka, Evgeny Krestyannikov, Ivo D. Dinov, Allan MacKenzie-Graham, David W. Shattuck, Ulla Ruotsalainen, Arthur W. Toga:
Genetic Algorithms for Finite Mixture Model Based Voxel Classification in Neuroimaging. IEEE Trans. Medical Imaging 26(5): 696-711 (2007) - [c11]Harri Pölönen, Maurice Jansen, Jussi Tohka, Elina Ikonen, Ulla Ruotsalainen:
Automatic method for caveolar structure detection and intensity distribution analysis from microscopy images. EUSIPCO 2007: 1107-1111 - [c10]Evgeny Krestyannikov, Jussi Tohka, Ulla Ruotsalainen:
Statistical Modeling of Attenuation-Corrected Pet Data with Application to Reconstruction of Regional Time Activity Curves. ISBI 2007: 444-447 - [c9]Lu Zhao, Jussi Tohka, Ulla Ruotsalainen:
Accurate 3D Left-Right Brain Hemisphere Segmentation in MR Images Based on Shape Bottlenecks and Partial Volume Estimation. SCIA 2007: 581-590 - 2006
- [j5]Dimitris Glotsos, Jussi Tohka, Jori Soukka, Juhani T. Soini, Ulla Ruotsalainen:
Robust Estimation of Bioaffinity Assay Fluorescence Signals. IEEE Trans. Inf. Technol. Biomed. 10(4): 733-739 (2006) - [c8]Evgeny Krestyannikov, Jussi Tohka, Ulla Ruotsalainen:
Segmentation of Dynamic Emission Tomography Data in Projection Space. CVAMIA 2006: 108-119 - [c7]Anu Juslin, Jussi Tohka:
Unsupervised Segmentation of Cardiac PET Transmission Images for Automatic Heart Volume Extraction. EMBC 2006: 1077-1080 - [c6]Edisson Albán, Jussi Tohka, Ulla Ruotsalainen:
Adaptive edge detection based on 3D kernel functions for biomedical image analysis. Image Processing: Algorithms and Systems 2006: 224-235 - 2005
- [j4]Jouni M. Mykkänen, Jussi Tohka, Jouni Luoma, Ulla Ruotsalainen:
Automatic extraction of brain surface and mid-sagittal plane from PET images applying deformable models. Comput. Methods Programs Biomed. 79(1): 1-17 (2005) - [j3]Dimitris Glotsos, Jussi Tohka, Panagiota Ravazoula, Dionisis A. Cavouras, George Nikiforidis:
Automated diagnosis of brain tumours astrocytomas using probabilistic neural network clustering and support vector machines. Int. J. Neural Syst. 15(1-2): 1-11 (2005) - [c5]Anu Juslin, Anthonin Reilhac, Margarita Magadán-Méndez, Edisson Albán, Jussi Tohka, Ulla Ruotsalainen:
Assessment of Separation of Functional Components with ICA from Dynamic Cardiac Perfusion PET Phantom Images for Volume Extraction with Deformable Surface Models. FIMH 2005: 338-347 - [c4]Jouni M. Mykkänen, Mikko Itäranta, Jussi Tohka:
Object-Oriented Implementation for the Dual Surface Minimisation Algorithm. MIE 2005: 477-482 - 2004
- [j2]Jussi Tohka, Jouni M. Mykkänen:
Deformable Mesh For Automated Surface Extraction From Noisy Images. Int. J. Image Graph. 4(3): 405-432 (2004) - [j1]Jussi Tohka, Alex P. Zijdenbos, Alan C. Evans:
Fast and robust parameter estimation for statistical partial volume models in brain MRI. NeuroImage 23(1): 84-97 (2004) - 2003
- [b1]Jussi Tohka:
Global optimization-based deformable meshes for surface extraction from medical images. University of Tampere, Finland, 2003 - [c3]Jouni M. Mykkänen, Jussi Tohka, Ulla Ruotsalainen:
Delineation of drain Structures from Positron Emission Tomography Images with Deformable Models. MIE 2003: 33-38 - 2002
- [c2]Jussi Tohka:
Surface Extraction from Volumetric Images Using Deformable Meshes: A Comparative Study. ECCV (3) 2002: 350-364 - 2001
- [c1]Jussi Tohka:
Global Optimization of Deformable Surface Meshes Based on Genetic Algorithms. ICIAP 2001: 459-464
Coauthor Index
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