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Juan Fernández-Recio
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Journal Articles
- 2022
- [j24]Mihaly Varadi
, Stephen Anyango
, David R. Armstrong
, John M. Berrisford, Preeti Choudhary
, Mandar S. Deshpande
, Nurul Nadzirin, Sreenath Nair
, Lukás Pravda, Ahsan Tanweer
, Bissan Al-Lazikani
, Claudia Andreini
, Geoffrey J. Barton, David Bednar, Karel Berka
, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský
, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali
, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec
, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías
, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra
, Gerardo Pepe
, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy
, Atilio O. Rausch
, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato
, Pawel Rubach
, Luis Serrano, Gulzar Singh, Petr Skoda
, Carlos Oscar Sánchez Sorzano
, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton
, Michael J. E. Sternberg
, Christine A. Orengo, Sameer Velankar
:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - 2021
- [j23]Pep Amengual-Rigo
, Juan Fernández-Recio
, Victor Guallar:
UEP: an open-source and fast classifier for predicting the impact of mutations in protein-protein complexes. Bioinform. 37(3): 334-341 (2021) - 2020
- [j22]Miguel Romero-Durana
, Brian Jiménez-García
, Juan Fernández-Recio
:
pyDockEneRes: per-residue decomposition of protein-protein docking energy. Bioinform. 36(7): 2284-2285 (2020) - 2019
- [j21]Justina Jankauskaite, Brian Jiménez-García
, Justas Dapkunas
, Juan Fernández-Recio
, Iain H. Moal
:
SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation. Bioinform. 35(3): 462-469 (2019) - 2018
- [j20]Brian Jiménez-García
, Jorge Roel-Touris, Miguel Romero-Durana
, Miquel Vidal
, Daniel Jiménez-González
, Juan Fernández-Recio
:
LightDock: a new multi-scale approach to protein-protein docking. Bioinform. 34(1): 49-55 (2018) - 2017
- [j19]Iain H. Moal, Didier Barradas-Bautista
, Brian Jiménez-García
, Mieczyslaw Torchala, Arjan van der Velde
, Thom Vreven, Zhiping Weng, Paul A. Bates
, Juan Fernández-Recio
:
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection. Bioinform. 33(12): 1806-1813 (2017) - 2015
- [j18]Iain H. Moal
, Brian Jiménez-García
, Juan Fernández-Recio
:
CCharPPI web server: computational characterization of protein-protein interactions from structure. Bioinform. 31(1): 123-125 (2015) - [j17]Iain H. Moal, Juan Fernández-Recio
:
Comment on 'protein-protein binding affinity prediction from amino acid sequence'. Bioinform. 31(4): 614-615 (2015) - [j16]Brian Jiménez-García
, Carles Pons
, Dmitri I. Svergun, Pau Bernadó
, Juan Fernández-Recio
:
pyDockSAXS: protein-protein complex structure by SAXS and computational docking. Nucleic Acids Res. 43(Webserver-Issue): W356-W361 (2015) - 2013
- [j15]Mieczyslaw Torchala, Iain H. Moal
, Raphael A. G. Chaleil, Juan Fernández-Recio
, Paul A. Bates
:
SwarmDock: a server for flexible protein-protein docking. Bioinform. 29(6): 807-809 (2013) - [j14]Brian Jiménez-García
, Carles Pons
, Juan Fernández-Recio
:
pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring. Bioinform. 29(13): 1698-1699 (2013) - [j13]Iain H. Moal
, Mieczyslaw Torchala, Paul A. Bates
, Juan Fernández-Recio
:
The scoring of poses in protein-protein docking: current capabilities and future directions. BMC Bioinform. 14: 286 (2013) - [j12]Rudi Agius, Mieczyslaw Torchala, Iain H. Moal
, Juan Fernández-Recio
, Paul A. Bates
:
Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization. PLoS Comput. Biol. 9(9) (2013) - 2012
- [j11]Carles Pons
, Daniel Jiménez-González
, Cecilia González-Alvarez, Harald Servat
, Daniel Cabrera-Benitez, Xavier Aguilar, Juan Fernández-Recio
:
Cell-Dock: high-performance protein-protein docking. Bioinform. 28(18): 2394-2396 (2012) - [j10]Iain H. Moal
, Juan Fernández-Recio
:
SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models. Bioinform. 28(20): 2600-2607 (2012) - 2011
- [j9]Carles Pons
, Fabian Glaser, Juan Fernández-Recio
:
Prediction of protein-binding areas by small-world residue networks and application to docking. BMC Bioinform. 12: 378 (2011) - [j8]Carles Pons
, David Talavera
, Xavier de la Cruz
, Modesto Orozco
, Juan Fernández-Recio
:
Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein-Protein Docking. J. Chem. Inf. Model. 51(2): 370-377 (2011) - 2010
- [j7]Albert Solernou, Juan Fernández-Recio
:
Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation. BMC Bioinform. 11: 352 (2010) - 2009
- [j6]José Ignacio Garzón, José Ramón López-Blanco
, Carles Pons
, Julio A. Kovacs, Ruben Abagyan, Juan Fernández-Recio
, Pablo Chacón
:
FRODOCK: a new approach for fast rotational protein-protein docking. Bioinform. 25(19): 2544-2551 (2009) - [j5]Yasir Arafat, Joarder Kamruzzaman
, Gour C. Karmakar, Juan Fernández-Recio
:
Predicting protein - protein interfaces as clusters of Optimal Docking Area points. Int. J. Data Min. Bioinform. 3(1): 55-67 (2009) - [j4]Roberto Mosca
, Carles Pons
, Juan Fernández-Recio
, Patrick Aloy
:
Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments. PLoS Comput. Biol. 5(8) (2009) - 2008
- [j3]Tammy M. K. Cheng, Tom L. Blundell, Juan Fernández-Recio
:
Structural assembly of two-domain proteins by rigid-body docking. BMC Bioinform. 9 (2008) - [j2]Bernard Degryse, Juan Fernández-Recio
, Valentina Citro
, Francescol Blasi
, Maria Vittoria Cubellis
:
In silico docking of urokinase plasminogen activator and integrins. BMC Bioinform. 9(S-2) (2008) - [j1]Solène Grosdidier, Juan Fernández-Recio
:
Identification of hot-spot residues in protein-protein interactions by computational docking. BMC Bioinform. 9 (2008)
Conference and Workshop Papers
- 2010
- [c4]Laura Perez-Cano, Albert Solernou, Carles Pons, Juan Fernández-Recio:
Structural Prediction of Protein-RNA Interaction by Computational Docking with Propensity-Based Statistical Potentials. Pacific Symposium on Biocomputing 2010: 293-301 - 2006
- [c3]Yasir Arafat, Gour C. Karmakar, Joarder Kamruzzaman
, Juan Fernández-Recio
:
Predicting Protein-Protein Interface using Desolvation Energy Similarity Matching. CIBCB 2006: 1-8 - 2004
- [c2]Juan Fernández-Recio:
Optimized Desolvation for Rigid-Body Docking: Fast Prediction of Protein Interaction Sites. Spanish Bioinformatics Conference 2004: 12-15 - 2002
- [c1]Juan Fernández-Recio, Maxim Totrov, Ruben Abagyan:
Screened Charge Electrostatic Model in Protein-Protein Docking Simulations. Pacific Symposium on Biocomputing 2002: 552-565
Parts in Books or Collections
- 2010
- [p1]Cecilia González-Alvarez, Harald Servat
, Daniel Cabrera-Benitez, Xavier Aguilar, Carles Pons, Juan Fernández-Recio, Daniel Jiménez-González:
Drug Design on the Cell BE. Scientific Computing with Multicore and Accelerators 2010: 331-350
Coauthor Index
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