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Saqib Mir
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2020 – today
- 2021
- [j13]Sreenath Nair
, Mihaly Varadi
, Nurul Nadzirin, Lukás Pravda
, Stephen Anyango
, Saqib Mir, John M. Berrisford, David R. Armstrong
, Aleksandras Gutmanas
, Sameer Velankar
:
PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data. Bioinform. 37(21): 3950-3952 (2021) - 2020
- [j12]David R. Armstrong
, John M. Berrisford
, Matthew J. Conroy
, Aleksandras Gutmanas
, Stephen Anyango
, Preeti Choudhary
, Alice R. Clark
, Jose M. Dana, Mandar S. Deshpande
, Roisin Dunlop, Paul J. Gane, Romana Gáborová, Deepti Gupta
, Pauline Haslam, Jaroslav Koca, Lora Mak
, Saqib Mir
, Abhik Mukhopadhyay, Nurul Nadzirin, Sreenath Nair
, Typhaine Paysan-Lafosse
, Lukás Pravda
, David Sehnal, Osman Salih
, Oliver S. Smart, James Tolchard
, Mihaly Varadi
, Radka Svobodová Vareková
, Hossam Zaki
, Gerard J. Kleywegt
, Sameer Velankar
:
PDBe: improved findability of macromolecular structure data in the PDB. Nucleic Acids Res. 48(Database-Issue): D335-D343 (2020) - [j11]Mihaly Varadi
, John M. Berrisford, Mandar S. Deshpande
, Sreenath Nair
, Aleksandras Gutmanas
, David R. Armstrong
, Lukás Pravda
, Bissan Al-Lazikani
, Stephen Anyango
, Geoffrey J. Barton, Karel Berka
, Tom L. Blundell, Neera Borkakoti
, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali
, Toby J. Gibson
, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas
, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar
, Emmanuel D. Levy, Fábio Madeira
, M. S. Madhusudhan, Henry J. Martell
, Stuart A. MacGowan
, Jake E. McGreig
, Saqib Mir, Abhik Mukhopadhyay, Luca Parca
, Typhaine Paysan-Lafosse
, Leandro G. Radusky, António J. M. Ribeiro
, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda
, Radka Svobodová Vareková
, Jonathan D. Tyzack
, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton
, Michael J. E. Sternberg
, Christine A. Orengo, Sameer Velankar
:
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020)
2010 – 2019
- 2018
- [j10]Saqib Mir
, Younes Alhroub, Stephen Anyango
, David R. Armstrong
, John M. Berrisford
, Alice R. Clark
, Matthew J. Conroy
, Jose M. Dana
, Mandar S. Deshpande
, Deepti Gupta
, Aleksandras Gutmanas
, Pauline Haslam
, Lora Mak
, Abhik Mukhopadhyay
, Nurul Nadzirin
, Typhaine Paysan-Lafosse
, David Sehnal, Sanchayita Sen, Oliver S. Smart
, Mihaly Varadi
, Gerard J. Kleywegt
, Sameer Velankar
:
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. Nucleic Acids Res. 46(Database-Issue): D486-D492 (2018) - 2016
- [j9]Sameer Velankar, Glen van Ginkel
, Younes Alhroub, Gary M. Battle, John M. Berrisford
, Matthew J. Conroy, Jose M. Dana
, Swanand P. Gore, Aleksandras Gutmanas
, Pauline Haslam, Pieter M. S. Hendrickx
, Ingvar C. Lagerstedt
, Saqib Mir
, Manuel A. Fernandez Montecelo, Abhik Mukhopadhyay
, Thomas J. Oldfield, Ardan Patwardhan, Eduardo Sanz-García, Sanchayita Sen, Robert A. Slowley, Michael E. Wainwright, Mandar S. Deshpande
, Andrii Iudin
, Gaurav Sahni, José Salavert Torres
, Miriam Hirshberg, Lora Mak, Nurul Nadzirin, David R. Armstrong, Alice R. Clark
, Oliver S. Smart, Paul K. Korir
, Gerard J. Kleywegt:
PDBe: improved accessibility of macromolecular structure data from PDB and EMDB. Nucleic Acids Res. 44(Database-Issue): 385-395 (2016) - 2014
- [j8]Aleksandras Gutmanas, Younes Alhroub, Gary M. Battle, John M. Berrisford
, Estelle Bochet, Matthew J. Conroy, Jose M. Dana
, Manuel A. Fernandez Montecelo, Glen van Ginkel
, Swanand P. Gore, Pauline Haslam
, Rowan Hatherley, Pieter M. S. Hendrickx, Miriam Hirshberg, Ingvar C. Lagerstedt
, Saqib Mir
, Abhik Mukhopadhyay
, Thomas J. Oldfield, Ardan Patwardhan
, Luana Rinaldi, Gaurav Sahni, Eduardo Sanz-García
, Sanchayita Sen
, Robert A. Slowley, Sameer Velankar, Michael E. Wainwright, Gerard J. Kleywegt:
PDBe: Protein Data Bank in Europe. Nucleic Acids Res. 42(Database-Issue): 285-291 (2014) - 2012
- [j7]Sameer Velankar
, Younes Alhroub, Christoph Best, Ségolène Caboche, Matthew J. Conroy
, Jose M. Dana
, Manuel A. Fernandez Montecelo, Glen van Ginkel
, Adel Golovin, Swanand P. Gore
, Aleksandras Gutmanas
, Pauline Haslam
, Pieter M. S. Hendrickx
, Egon Heuson
, Miriam Hirshberg, Melford John, Ingvar C. Lagerstedt
, Saqib Mir, Laurence E. Newman, Thomas J. Oldfield, Ardan Patwardhan
, Luana Rinaldi, Gaurav Sahni, Eduardo Sanz-García
, Sanchayita Sen, Robert A. Slowley, Antonio Suarez-Uruena, G. J. Swaminathan
, Martyn F. Symmons, Wim F. Vranken
, Michael E. Wainwright, Gerard J. Kleywegt
:
PDBe: Protein Data Bank in Europe. Nucleic Acids Res. 40(Database-Issue): 445-452 (2012) - [j6]Ulrike Wittig
, Renate Kania, Martin Golebiewski
, Maja Rey, Lei Shi, Lenneke Jong
, Enkhjargal Algaa, Andreas Weidemann, Heidrun Sauer-Danzwith, Saqib Mir
, Olga Krebs, Meik Bittkowski, Elina Wetsch, Isabel Rojas, Wolfgang Müller:
SABIO-RK - database for biochemical reaction kinetics. Nucleic Acids Res. 40(Database-Issue): 790-796 (2012) - 2011
- [j5]Sameer Velankar
, Younes Alhroub, Anaëlle Alili, Christoph Best, Harry Boutselakis, Ségolène Caboche, Matthew J. Conroy
, Jose M. Dana
, Glen van Ginkel
, Adel Golovin, Swanand P. Gore
, Aleksandras Gutmanas
, Pauline Haslam
, Miriam Hirshberg, Melford John, Ingvar C. Lagerstedt
, Saqib Mir
, Laurence E. Newman, Thomas J. Oldfield, Christopher J. Penkett, Jorge Pineda-Castillo, Luana Rinaldi, Gaurav Sahni, Grégoire Sawka, Sanchayita Sen
, Robert A. Slowley, Alan W. Sousa da Silva
, Antonio Suarez-Uruena, Jawahar Swaminathan
, Martyn F. Symmons, Wim F. Vranken
, Michael E. Wainwright, Gerard J. Kleywegt
:
PDBe: Protein Data Bank in Europe. Nucleic Acids Res. 39(Database-Issue): 402-410 (2011) - 2010
- [c4]Saqib Mir
, Steffen Staab, Isabel Rojas:
An Unsupervised Approach for Acquiring Ontologies and RDF Data from Online Life Science Databases. ESWC (2) 2010: 319-333
2000 – 2009
- 2009
- [c3]Saqib Mir, Steffen Staab, Isabel Rojas:
Web-Prospector - An Automatic, Site-Wide Wrapper Induction Approach for Scientific Deep-Web Databases. BTW 2009: 87-106 - [c2]Saqib Mir, Steffen Staab, Isabel Rojas:
Site-Wide Wrapper Induction for Life Science Deep Web Databases. DILS 2009: 96-112 - 2007
- [j4]Martin Golebiewski
, Saqib Mir, Renate Kania, Olga Krebs
, Andreas Weidemann, Ulrike Wittig, Isabel Rojas:
Integration of SABIO-RK in workbenches for kinetic model design. BMC Syst. Biol. 1(S-1): P4 (2007) - [j3]Isabel Rojas, Martin Golebiewski
, Renate Kania, Olga Krebs
, Saqib Mir, Andreas Weidemann, Ulrike Wittig:
SABIO-RK: a database for biochemical reactions and their kinetics. BMC Syst. Biol. 1(S-1): S6 (2007) - [j2]Isabel Rojas, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Ulrike Wittig:
Storing and Annotating of Kinetic Data. Silico Biol. 7(6): 37-44 (2007) - [j1]Olga Krebs, Martin Golebiewski, Renate Kania, Saqib Mir, Jasmin Saric, Andreas Weidemann, Ulrike Wittig, Isabel Rojas:
SABIO-RK: A data warehouse for biochemical reactions and their kinetics. J. Integr. Bioinform. 4(1) (2007) - 2006
- [c1]Ulrike Wittig
, Martin Golebiewski
, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Stefanie Anstein, Jasmin Saric, Isabel Rojas:
SABIO-RK: Integration and Curation of Reaction Kinetics Data. DILS 2006: 94-103
Coauthor Index
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