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Bjoern Menze

Bjoern H. Menze – Bjoern Holger Menze – Björn H. Menze

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affiliation: TU Munich, Faculty of Computer Science, Germany
affiliation: ETH Zurich, Computer Vision Laboratory, Switzerland
affiliation: Massachusetts Institute of Technology (MIT), Computer Science and Artificial Intelligence Laboratory, USA
affiliation: Harvard University, Department of Anthropology, Cambridge, MA, USA
affiliation: University of Heidelberg, Interdisciplinary Center for Computing (IWR), Germany

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2026
[j56]
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Daniel Barco, Marc Stadelmann, Martin Oswald, Ivo Herzig, Lukas Lichtensteiger, Pascal Paysan, Igor Peterlík, Michal Walczak, Bjoern Menze, Frank-Peter Schilling:
MInDI-3D: Iterative Deep Learning in 3D for Sparse-View Cone Beam Computed Tomography. IEEE Access 14: 6438-6449 (2026)
[j55]
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  - journals/access/MayoPAMG26
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Perla Mayo, Carolin M. Pirkl, Alin M. Achim, Bjoern H. Menze, Mohammad Golbabaee:
Denoising Diffusion Probabilistic Models for Magnetic Resonance Fingerprinting. IEEE Access 14: 48198-48211 (2026)
[j54]
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  - journals/cbm/MollerKGABBSKMRKP26
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Hendrik Kristian Möller, Lukas Krautschick, Robert Graf, Matan Atad, Chia-Jung Busch, Achim Beule, Christian Scharf, Lars Kaderali, Bjoern Menze, Daniel Rueckert, Jan S. Kirschke, Fabian Paperlein:
PARASIDE: An automatic paranasal sinus segmentation and structure analysis tool for magnetic resonance imaging. Comput. Biol. Medicine 204: 111511 (2026)
[j53]
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  - journals/neuroimage/ShangKPGLLVHMKCJ26
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Ziyao Shang, Misha P. T. Kaandorp, Kelly Payette, Marina Fernandez Garcia, Roxane Licandro, Georg Langs, Jordina Aviles Verdera, Jana Hutter, Bjoern H. Menze, Gregor Kasprian, Meritxell Bach Cuadra, András Jakab:
Towards contrast- and pathology-agnostic clinical fetal brain MRI segmentation using SynthSeg. NeuroImage 327: 121729 (2026)
[c169]
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Julian McGinnis, Suprosanna Shit, Florian A. Hölzl, Paul Friedrich, Paul Büschl, Vasiliki Sideri-Lampretsa, Mark Mühlau, Philippe C. Cattin, Bjoern Menze, Daniel Rueckert, Benedikt Wiestler:
Beyond Uniformity: Regularizing Implicit Neural Representations through a Lipschitz Lens. ICLR 2026
[c168]
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  - conf/isbi/LinXHPMBMS26
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Yuan Lin, Murong Xu, Marc Hölle, Chinmay Prabhakar, Andreas K. Maier, Vasileios Belagiannis, Bjoern Menze, Suprosanna Shit:
Progidiff: Prompt-Guided Diffusion-Based Medical Image Segmentation. ISBI 2026: 1-5
[c167]
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Wenxuan Li, Pedro R. A. S. Bassi, Xinze Zhou, Jakob Wasserthal, Ibrahim Ethem Hamamci, Sezgin Er, Bjoern Menze, Gulhan E. Akan, Szymon Plotka, Jakub Przado, Qi Chen, Yucheng Tang, Daguang Xu, Arkadiusz Sitek, Kang Wang, Yang Yang, Alan L. Yuille, Zongwei Zhou:
CancerVerse: A Fully Open Longitudinal and Multimodal Dataset for Multicancer Screening. MICCAI (18) 2026: 77-87
[c166]
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Jiayi Wang, Hadrien Reynaud, Mischa Dombrowski, Xiaoliang Wang, Ibrahim Ethem Hamamci, Suprosanna Shit, Sezgin Er, Bjoern Menze, Bernhard Kainz:
CTTok: Voxel-Abulary for Autoregressive 3D CT Volume Generation with Large Language Models. MICCAI (13) 2026: 122-132
[c165]
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Xiaoming Zhang, Maik Dannecker, Jon O. Cleary, Daniele Falcetta, Kaiyuan Yang, Bjoern Menze, Yu Shi, Susanne Wegener, Sébastien Ourselin, Daniel Rueckert, Maria A. Zuluaga:
Deep Probabilistic Cerebrovascular Atlas. MICCAI (12) 2026: 475-485
[c164]
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Edwin Ter Voert, Harald Witte, Vasundra Touré, Bjoern Menze, Sabine Österle:
Seeing Is Believing - FAIR Metadata for Medical Imaging Data in the SPHN Semantic Interoperability Framework. MIE 2026: 7-11
[d5]
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Mauricio Reyes, Ezequiel de la Rosa, Bjoern Menze:
ISLES (Ischemic Stroke Lesion Segmentation/Prediction) Challenge Datasets (2015, 2016, 2017, 2018). Version 2. Zenodo, 2026 [all versions]
[d4]
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Mauricio Reyes, Ezequiel de la Rosa, Bjoern Menze:
ISLES (Ischemic Stroke Lesion Segmentation/Prediction) Challenge Datasets (2015, 2016, 2017, 2018). Version 3. Zenodo, 2026 [all versions]
[i185]
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  - journals/corr/abs-2601-14066
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Hendrik Kristian Möller, Hanna Schön, Robert Graf, Matan Atad, Nathan Molinier, Anjany Sekuboyina, Bettina K. Budai, Fabian Bamberg, Steffen Ringhof, Christopher Schlett, Tobias Pischon, Thoralf Niendorf, Josua A. Decker, Marc-André Weber, Bjoern Menze, Daniel Rueckert, Jan S. Kirschke:
VERIDAH: Solving Enumeration Anomaly Aware Vertebra Labeling across Imaging Sequences. CoRR abs/2601.14066 (2026)
[i184]
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  - journals/corr/abs-2601-16060
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Yuan Lin, Murong Xu, Marc Hölle, Chinmay Prabhakar, Andreas Maier, Vasileios Belagiannis, Bjoern Menze, Suprosanna Shit:
ProGiDiff: Prompt-Guided Diffusion-Based Medical Image Segmentation. CoRR abs/2601.16060 (2026)
[i183]
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  - journals/corr/abs-2602-14615
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Aswathi Varma, Suprosanna Shit, Chinmay Prabhakar, Daniel Scholz, Hongwei Bran Li, Bjoern Menze, Daniel Rueckert, Benedikt Wiestler:
VariViT: A Vision Transformer for Variable Image Sizes. CoRR abs/2602.14615 (2026)
[i182]
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  - journals/corr/abs-2602-21735
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Jiayi Wang, Hadrien Reynaud, Ibrahim Ethem Hamamci, Sezgin Er, Suprosanna Shit, Bjoern Menze, Bernhard Kainz:
SigVLP: Sigmoid Volume-Language Pre-Training for Self-Supervised CT-Volume Adaptive Representation Learning. CoRR abs/2602.21735 (2026)
[i181]
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  - journals/corr/abs-2603-11316
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Mohammad Golbabaee, Matteo Cencini, Carolin M. Pirkl, Marion I. Menzel, Michela Tosetti, Bjoern Menze:
MRI2Qmap: multi-parametric quantitative mapping with MRI-driven denoising priors. CoRR abs/2603.11316 (2026)
[i180]
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  - journals/corr/abs-2603-18797
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Chinmay Prabhakar, Bastian Wittmann, Tamaz Amiranashvili, Paul Büschl, Ezequiel de la Rosa, Julian McGinnis, Benedikt Wiestler, Bjoern Menze, Suprosanna Shit:
VesselTok: Tokenizing Vessel-like 3D Biomedical Graph Representations for Reconstruction and Generation. CoRR abs/2603.18797 (2026)
[i179]
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  - journals/corr/abs-2603-23398
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Michal Balcerak, Suprosana Shit, Chinmay Prabhakar, Sebastian Kaltenbach, Michael S. Albergo, Yilun Du, Bjoern Menze:
Graph Energy Matching: Transport-Aligned Energy-Based Modeling for Graph Generation. CoRR abs/2603.23398 (2026)
[i178]
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  - journals/corr/abs-2604-15231
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Mélanie Roschewitz, Kenneth Styppa, Yitian Tao, Jiwoong Sohn, Jean-Benoit Delbrouck, Benjamin Gundersen, Nicolas Deperrois, Christian Bluethgen, Julia E. Vogt, Bjoern Menze, Farhad Nooralahzadeh, Michael Krauthammer, Michael Moor:
RadAgent: A tool-using AI agent for stepwise interpretation of chest computed tomography. CoRR abs/2604.15231 (2026)
[i177]
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  - journals/corr/abs-2605-01382
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Chinmay Prabhakar, Bastian Wittmann, Paul Büschl, Hongwei Bran Li, Bjoern Menze, Suprosanna Shit:
Sparse Representation Learning for Vessels. CoRR abs/2605.01382 (2026)
[i176]
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  - journals/corr/abs-2606-09400
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Bastian Wittmann, Chinmay Prabhakar, Suprosanna Shit, Bjoern Menze:
vesselFM-CT: Segmenting All Blood Vessels in CT Images for System-Level Cardiovascular Analysis. CoRR abs/2606.09400 (2026)
[i175]
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  - journals/corr/abs-2606-14828
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Junyong Cao, Hakim Baazaoui, Chinmay Prabhakar, Suprosanna Shit, Lukas Bastian Otto, Susanne Wegener, Bjoern Menze, Ezequiel de la Rosa:
Leptomeningeal Collateral Detection on DSA via Vessel-Graph Neural Networks. CoRR abs/2606.14828 (2026)
[i174]
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  - journals/corr/abs-2606-26706
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Pengcheng Shi, Kaiyuan Yang, Houjing Huang, Jiawei Chen, Yan Lu, Jiaqi Liu, Murong Xu, Bjoern Menze, Xinglin Zhang:
Intracranial Aneurysm Classification and Segmentation via Tri-Axial ROI and Multi-Task Learning. CoRR abs/2606.26706 (2026)
[i173]
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  - journals/corr/abs-2608-18986
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Maedeh Hafezi Moghadas, Hakim Baazaoui, Lukas Bastian Otto, Susanne Wegener, Björn H. Menze, Ezequiel de la Rosa:
X-LMC: Cross-View Spatiotemporal Collateral Circulation Scoring from DSA. CoRR abs/2608.18986 (2026)
[i172]
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  - journals/corr/abs-2608-20935
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Muhammad Hussnain Abbas, Michal Balcerak, Asif Ahmad, Bjoern Menze, Ezequiel de la Rosa:
An Imaging-Informed Reaction-Diffusion Model of Infarct Growth. CoRR abs/2608.20935 (2026)
[i171]
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  - journals/corr/abs-2609-03694
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Paul Büschl, Ezequiel de la Rosa, Julia Wolleb, Julian McGinnis, César Nombela-Arrieta, Bjoern Menze:
Observation-Conditioned Latent Energy Priors for Sparse Implicit Neural Shape Completion. CoRR abs/2609.03694 (2026)
[i170]
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  - journals/corr/abs-2609-27511
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Andriy Myronenko, Dong Yang, Yucheng Tang, Baris Turkbey, Benjamin Simon, Stephanie A. Harmon, Rikhil Makwana, Mariam Aboian, Sena Azamat, Ibrahim Ethem Hamamci, Sezgin Er, Bjoern Menze, Zongwei Zhou, Wenxuan Li, Marc Edgar, Yufan He, Pengfei Guo, Daguang Xu:
NV-Reason-CT: 3D Visual Language Model for CT Analysis. CoRR abs/2609.27511 (2026)
[i169]
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  - journals/corr/abs-2609-35637
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Pedro R. A. S. Bassi, Wenxuan Li, Hanxue Gu, Jieneng Chen, Xinze Zhou, Zheren Zhu, Sezgin Er, Ibrahim Ethem Hamamci, Bjoern H. Menze, Gulhan E. Akan, Kang Wang, Yang Yang, Alan L. Yuille, Zongwei Zhou:
RT-Super: Learning Tumor Segmentation from Longitudinal Images and Reports. CoRR abs/2609.35637 (2026)
2025
[j52]
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  - journals/mia/IvantsitsGKHBKPSSKJLSMS25
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Matthias Ivantsits, Leonid Goubergrits, Jan-Martin Kuhnigk, Markus Hüllebrand, Jan Brüning, Tabea Kossen, Boris Pfahringer, Jens Schaller, Andreas Spuler, Titus Kühne, Yizhuan Jia, Xuesong Li, Suprosanna Shit, Bjoern H. Menze, Ziyu Su, Jun Ma, Ziwei Nie, Kartik Jain, Yanfei Liu, Yi Lin, Anja Hennemuth:
Corrigendum to "Detection and analysis of cerebral aneurysms based on X-ray rotational angiography - the CADA 2020 challenge" [Medical Image Analysis, April 2022, Volume 77, 102333]. Medical Image Anal. 100: 103363 (2025)
[j51]
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Ray Zirui Zhang, Ivan Ezhov, Michal Balcerak, Andy Zhu, Benedikt Wiestler, Bjoern H. Menze, John S. Lowengrub:
Personalized predictions of Glioblastoma infiltration: Mathematical models, Physics-Informed Neural Networks and multimodal scans. Medical Image Anal. 101: 103423 (2025)
[j50]
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Iris N. Vos, Ynte M. Ruigrok, Edwin Bennink, Mireille R. E. Velthuis, Barbara Paic, Maud E. H. Ophelders, Myrthe A. D. Buser, Bas H. M. van der Velden, Chen Geng, Matthieu Coupet, Félix Dumais, Adrian Galdran, Junyi Zhang, Wei Liu, Ting Ma, Madhu S. Nair, Mathieu Naudin, Preena K. P., Keerthi A. S. Pillai, Pengcheng Shi, Thierry Urruty, Yakang Dai, Kaiyuan Yang, Fabio Musio, Bjoern H. Menze, Birgitta K. Velthuis, Hugo J. Kuijf:
Evaluation of techniques for automated classification and artery quantification of the circle of Willis on TOF-MRA images: The CROWN challenge. Medical Image Anal. 105: 103650 (2025)
[j49]
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Jonas Weidner, Ivan Ezhov, Michal Balcerak, Marie-Christin Metz, Sergey Litvinov, Sebastian Kaltenbach, Leonhard F. Feiner, Laurin Lux, Florian Kofler, Jana Lipková, Jonas Latz, Daniel Rueckert, Bjoern H. Menze, Benedikt Wiestler:
A Learnable Prior Improves Inverse Tumor Growth Modeling. IEEE Trans. Medical Imaging 44(3): 1297-1307 (2025)
[c163]
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  - conf/bibm/LuoZHRRSM25
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Haozhe Luo, Ziyu Zhou, Ming Hou, Corentin Royer, Mauricio Reyes, Anjany Sekuboyina, Bjoern Menze:
DeViDe: Faceted Medical Knowledge to Enhance Vision Foundation Model Pretraining for Radiology. BIBM 2025: 1779-1782
[c162]
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Zeineb Haouari, Jonas Weidner, Ivan Ezhov, Aswathi Varma, Daniel Rueckert, Bjoern H. Menze, Benedikt Wiestler:
Efficient Deep Learning-based Forward Solvers for Brain Tumor Growth Models. Bildverarbeitung für die Medizin 2025: 57-62
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Jonas Weidner, Michal Balcerak, Ivan Ezhov, André Datchev, Laurin Lux, Lucas Zimmer, Daniel Rueckert, Bjoern H. Menze, Benedikt Wiestler:
A Lightweight Optimization Framework for Estimating 3D Brain Tumor Infiltration. CMMCA@MICCAI 2025: 1-10
[c160]
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  - conf/cvpr/WittmannWASM25
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Bastian Wittmann, Yannick Wattenberg, Tamaz Amiranashvili, Suprosanna Shit, Bjoern H. Menze:
vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation. CVPR 2025: 20874-20884
[c159]
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Pedro R. A. S. Bassi, Mehmet Can Yavuz, Ibrahim Ethem Hamamci, Sezgin Er, Xiaoxi Chen, Wenxuan Li, Bjoern Menze, Sergio Decherchi, Andrea Cavalli, Kang Wang, Yang Yang, Alan L. Yuille, Zongwei Zhou:
RadGPT: Constructing 3D Image-Text Tumor Datasets. ICCV 2025: 23720-23730
[c158]
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Jonas Weidner, Ivan Ezhov, Michal Balcerak, André Datchev, Lucas Zimmer, Daniel Rueckert, Bjoern H. Menze, Benedikt Wiestler:
From Fiber Tracts to Tumor Spread: Biophysical Modeling of Butterfly Glioma Growth Using Diffusion Tensor Imaging. CDMRI@MICCAI 2025: 1-9
[c157]
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Alicia Durrer, Florentin Bieder, Paul Friedrich, Bjoern H. Menze, Philippe C. Cattin, Florian Kofler:
fastWDM3D: Fast and Accurate 3D Healthy Tissue Inpainting. DGM4MICCAI@MICCAI 2025: 171-181
[c156]
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Alina F. Dima, Suprosanna Shit, Huaqi Qiu, Robbie Holland, Tamara T. Mueller, Fabio Musio, Kaiyuan Yang, Bjoern H. Menze, Rickmer Braren, Marcus R. Makowski, Daniel Rueckert:
Parametric Shape Models for Vessels Learned from Segmentations via Differentiable Voxelization. ShapeMI@MICCAI 2025: 247-261
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Perla Mayo, Carolin M. Pirkl, Alin Achim, Bjoern Menze, Mohammad Golbabaee:
Physics Informed Guided Diffusion for Accelerated Multi-parametric MRI Reconstruction. MICCAI (16) 2025: 429-439
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Chinmay Prabhakar, Suprosanna Shit, Tamaz Amiranashvili, Hongwei Bran Li, Bjoern H. Menze:
Semantically Consistent Discrete Diffusion for 3D Biological Graph Modeling. MICCAI (12) 2025: 594-604
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Daniele Falcetta, Vincenzo Marcianó, Kaiyuan Yang, Jon O. Cleary, Loïc Legris, Massimiliano Domenico Rizzaro, Ioannis Pitsiorlas, Hava Chaptoukaev, Benjamin Lemasson, Bjoern H. Menze, Maria A. Zuluaga:
VesselVerse: A Dataset and Collaborative Framework for Vessel Annotation. MICCAI (13) 2025: 655-665
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Michal Balcerak, Tamaz Amiranashvili, Antonio Terpin, Suprosanna Shit, Lea Bogensperger, Sebastian Kaltenbach, Petros Koumoutsakos, Bjoern Menze:
Energy Matching: Unifying Flow Matching and Energy-Based Models for Generative Modeling. NeurIPS 2025
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Ibrahim Ethem Hamamci, Sezgin Er, Suprosanna Shit, Hadrien Reynaud, Dong Yang, Pengfei Guo, Marc Edgar, Daguang Xu, Bernhard Kainz, Bjoern Menze:
Better Tokens for Better 3D: Advancing Vision-Language Modeling in 3D Medical Imaging. NeurIPS 2025
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Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey D. Rudie, Syed Amaan Abidi, Mina Mousa, Javier E. Villanueva-Meyer, Brandon K. K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Eugenio Iglesias, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Björn H. Menze, Spyridon Bakas, Diana Waldmannstetter:
Brain Tumor Sequence Registration (BraTS-Reg) Challenge Dataset. Zenodo, 2025
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Fabio Musio, Norman Juchler, Kaiyuan Yang, Suprosanna Shit, Chinmay Prabhakar, Bjoern Menze, Sven Hirsch:
Circle of Willis Centerline Graphs and Morphometric Features. Zenodo, 2025
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Mauricio Reyes, Ezequiel de la Rosa, Bjoern Menze:
ISLES (Ischemic Stroke Lesion Segmentation/Prediction) Challenge Datasets (2015, 2016, 2017, 2018). Version 1. Zenodo, 2025 [all versions]
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  - journals/corr/abs-2501-08226
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Zeineb Haouari, Jonas Weidner, Ivan Ezhov, Aswathi Varma, Daniel Rueckert, Bjoern H. Menze, Benedikt Wiestler:
Efficient Deep Learning-based Forward Solvers for Brain Tumor Growth Models. CoRR abs/2501.08226 (2025)
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Hendrik Kristian Möller, Lukas Krautschick, Matan Atad, Robert Graf, Chia-Jung Busch, Achim Beule, Christian Scharf, Lars Kaderali, Bjoern H. Menze, Daniel Rueckert, Jan Kirschke, Fabian Schwitzing:
PARASIDE: An Automatic Paranasal Sinus Segmentation and Structure Analysis Tool for MRI. CoRR abs/2501.14514 (2025)
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  - journals/corr/abs-2504-10244
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Ziyao Shang, Misha P. T. Kaandorp, Kelly Payette, Marina Fernandez Garcia, Roxane Licandro, Georg Langs, Jordina Aviles Verdera, Jana Hutter, Bjoern H. Menze, Gregor Kasprian, Meritxell Bach Cuadra, András Jakab:
Towards contrast- and pathology-agnostic clinical fetal brain MRI segmentation using SynthSeg. CoRR abs/2504.10244 (2025)
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Michal Balcerak, Tamaz Amiranashvili, Suprosanna Shit, Antonio Terpin, Sebastian Kaltenbach, Petros Koumoutsakos, Bjoern H. Menze:
Energy Matching: Unifying Flow Matching and Energy-Based Models for Generative Modeling. CoRR abs/2504.10612 (2025)
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  - journals/corr/abs-2505-05004
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Hendrik Kristian Möller, Hanna Schön, Alina Dima, Benjamin Keinert-Weth, Robert Graf, Matan Atad, Johannes C. Paetzold, Friederike Jungmann, Rickmer Braren, Florian Kofler, Bjoern H. Menze, Daniel Rueckert, Jan S. Kirschke:
Automated Thoracolumbar Stump Rib Detection and Analysis in a Large CT Cohort. CoRR abs/2505.05004 (2025)
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Ibrahim Ethem Hamamci, Sezgin Er, Suprosanna Shit, Hadrien Reynaud, Bernhard Kainz, Bjoern H. Menze:
CRG Score: A Distribution-Aware Clinical Metric for Radiology Report Generation. CoRR abs/2505.17167 (2025)
[i162]
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  - journals/corr/abs-2506-13807
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Florian Kofler, Marcel Rosier, Mehdi Astaraki, Ujjwal Baid, Hendrik Kristian Möller, Josef A. Buchner, Felix Steinbauer, Eva Oswald, Ezequiel de la Rosa, Ivan Ezhov, Constantin von See, Jan Kirschke, Anton Schmick, Sarthak Pati, Akis Linardos, Carla Pitarch, Sanyukta Adap, Jeffrey D. Rudie, Maria Correia de Verdier, Rachit Saluja, Evan Calabrese, Dominic LaBella, Mariam Aboian, Ahmed W. Moawad, Nazanin Maleki, Udunna Anazodo, Maruf Adewole, Marius George Linguraru, Anahita Fathi Kazerooni, Zhifan Jiang, Gian Marco Conte, Hongwei Li, Juan Eugenio Iglesias, Spyridon Bakas, Benedikt Wiestler, Marie Piraud, Bjoern H. Menze:
BraTS orchestrator : Democratizing and Disseminating state-of-the-art brain tumor image analysis. CoRR abs/2506.13807 (2025)
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Perla Mayo, Carolin M. Pirkl, Alin Achim, Bjoern H. Menze, Mohammad Golbabaee:
Physics informed guided diffusion for accelerated multi-parametric MRI reconstruction. CoRR abs/2506.23311 (2025)
[i160]
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  - journals/corr/abs-2507-02576
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Alina F. Dima, Suprosanna Shit, Huaqi Qiu, Robbie Holland, Tamara T. Mueller, Fabio Musio, Kaiyuan Yang, Bjoern H. Menze, Rickmer Braren, Marcus R. Makowski, Daniel Rueckert:
Parametric shape models for vessels learned from segmentations via differentiable voxelization. CoRR abs/2507.02576 (2025)
[i159]
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  - journals/corr/abs-2507-04856
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Chinmay Prabhakar, Suprosanna Shit, Tamaz Amiranashvili, Hongwei Bran Li, Bjoern H. Menze:
Semantically Consistent Discrete Diffusion for 3D Biological Graph Modeling. CoRR abs/2507.04856 (2025)
[i158]
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  - journals/corr/abs-2507-09036
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Florian Kofler, Marcel Rosier, Mehdi Astaraki, Hendrik Kristian Möller, Isra Mekki, Josef A. Buchner, Anton Schmick, Arianna Pfiffer, Eva Oswald, Lucas Zimmer, Ezequiel de la Rosa, Sarthak Pati, Julian Canisius, Arianna Piffer, Ujjwal Baid, Mahyar Valizadeh, Akis Linardos, Jan C. Peeken, Surprosanna Shit, Felix Steinbauer, Daniel Rueckert, Rolf A. Heckemann, Spyridon Bakas, Jan Kirschke, Constantin von See, Ivan Ezhov, Marie Piraud, Benedikt Wiestler, Bjoern H. Menze:
BrainLesion Suite: A Flexible and User-Friendly Framework for Modular Brain Lesion Image Analysis. CoRR abs/2507.09036 (2025)
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Alicia Durrer, Florentin Bieder, Paul Friedrich, Bjoern H. Menze, Philippe C. Cattin, Florian Kofler:
fastWDM3D: Fast and Accurate 3D Healthy Tissue Inpainting. CoRR abs/2507.13146 (2025)
[i156]
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Arianna Piffer, Josef A. Buchner, Gennari Antonio Giulio, Patrice Grehten, S. Sirin, E. Ross, Ivan Ezhov, Marcel Rosier, Jan Peeken, Marie Piraud, Bjoern H. Menze, A. Guerreiro Stücklin, András Jakab, Florian Kofler:
Enhancing efficiency in paediatric brain tumour segmentation using a pathologically diverse single-center clinical dataset. CoRR abs/2507.22152 (2025)
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Murong Xu, Tamaz Amiranashvili, Fernando Navarro, Maksym Fritsak, Ibrahim Ethem Hamamci, Suprosanna Shit, Bastian Wittmann, Sezgin Er, Sebastian M. Christ, Ezequiel de la Rosa, Julian Deseoe, Robert Graf, Hendrik Kristian Möller, Anjany Sekuboyina, Jan C. Peeken, Anton S. Becker, Giulia Baldini, Johannes Haubold, Felix Nensa, René Hosch, Nikhil Mirajkar, Saad Khalid, Stefan Zachow, Marc-André Weber, Georg Langs, Jakob Wasserthal, Mehmet Kemal Özdemir, Andrey Fedorov, Ron Kikinis, Stephanie Tanadini-Lang, Jan S. Kirschke, Stephanie E. Combs, Bjoern H. Menze:
CADS: A Comprehensive Anatomical Dataset and Segmentation for Whole-Body Anatomy in Computed Tomography. CoRR abs/2507.22953 (2025)
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Daniel Barco, Marc Stadelmann, Martin Oswald, Ivo Herzig, Lukas Lichtensteiger, Pascal Paysan, Igor Peterlík, Michal Walczak, Bjoern Menze, Frank-Peter Schilling:
MInDI-3D: Iterative Deep Learning in 3D for Sparse-view Cone Beam Computed Tomography. CoRR abs/2508.09616 (2025)
[i153]
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Lucas Zimmer, Jonas Weidner, Michal Balcerak, Florian Kofler, Ivan Ezhov, Bjoern H. Menze, Benedikt Wiestler:
PREDICT-GBM: Platform for Robust Evaluation and Development of Individualized Computational Tumor Models in Glioblastoma. CoRR abs/2509.13360 (2025)
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Fabio Musio, Norman Juchler, Kaiyuan Yang, Suprosanna Shit, Chinmay Prabhakar, Bjoern H. Menze, Sven Hirsch:
Circle of Willis Centerline Graphs: A Dataset and Baseline Algorithm. CoRR abs/2510.13720 (2025)
[i151]
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Pedro R. A. S. Bassi, Xinze Zhou, Wenxuan Li, Szymon Plotka, Jieneng Chen, Qi Chen, Zheren Zhu, Jakub Przado, Ibrahim E. Hamaci, Sezgin Er, Yuhan Wang, Ashwin Kumar, Björn H. Menze, Jaroslaw B. Cwikla, Yuyin Zhou, Akshay S. Chaudhari, Curtis P. Langlotz, Sergio Decherchi, Andrea Cavalli, Kang Wang, Yang Yang, Alan L. Yuille, Zongwei Zhou:
Scaling Artificial Intelligence for Multi-Tumor Early Detection with More Reports, Fewer Masks. CoRR abs/2510.14803 (2025)
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  - journals/corr/abs-2510-18188
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Chengrun Li, Corentin Royer, Haozhe Luo, Bastian Wittmann, Xia Li, Ibrahim Ethem Hamamci, Sezgin Er, Anjany Sekuboyina, Bjoern H. Menze:
RadDiagSeg-M: A Vision Language Model for Joint Diagnosis and Multi-Target Segmentation in Radiology. CoRR abs/2510.18188 (2025)
[i149]
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  - journals/corr/abs-2510-20639
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Ibrahim Ethem Hamamci, Sezgin Er, Suprosanna Shit, Hadrien Reynaud, Dong Yang, Pengfei Guo, Marc Edgar, Daguang Xu, Bernhard Kainz, Bjoern H. Menze:
Better Tokens for Better 3D: Advancing Vision-Language Modeling in 3D Medical Imaging. CoRR abs/2510.20639 (2025)
[i148]
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  - journals/corr/abs-2512-06206
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Akis Linardos, Sarthak Pati, Ujjwal Baid, Brandon Edwards, Patrick Foley, Kevin Ta, Verena Chung, Micah Sheller, Muhammad Irfan Khan, Mojtaba Jafaritadi, Elina Kontio, Suleiman A. Khan, Leon Mächler, Ivan Ezhov, Suprosanna Shit, Johannes C. Paetzold, Gustav Grimberg, Manuel Nickel, David Naccache, Vasilis Siomos, Jonathan Passerat-Palmbach, Giacomo Tarroni, Daewoon Kim, Leonard L. Klausmann, Prashant Shah, Bjoern H. Menze, Dimitrios Makris, Spyridon Bakas:
The MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024: Efficient and Robust Aggregation Methods for Federated Learning. CoRR abs/2512.06206 (2025)
[i147]
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  - journals/corr/abs-2512-06849
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Matan Atad, Alexander W. Marka, Lisa Steinhelfer, Anna Curto-Vilalta, Yannik Leonhardt, Sarah C. Foreman, Anna-Sophia Dietrich, Robert Graf, Alexandra S. Gersing, Bjoern H. Menze, Daniel Rueckert, Jan S. Kirschke, Hendrik Kristian Möller:
Hide-and-Seek Attribution: Weakly Supervised Segmentation of Vertebral Metastases in CT. CoRR abs/2512.06849 (2025)
[i146]
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Junqi Liu, Zejun Wu, Pedro R. A. S. Bassi, Xinze Zhou, Wenxuan Li, Ibrahim Ethem Hamamci, Sezgin Er, Tianyu Lin, Yi Luo, Szymon Plotka, Bjoern H. Menze, Daguang Xu, Kai Ding, Kang Wang, Yang Yang, Yucheng Tang, Alan L. Yuille, Zongwei Zhou:
See More, Change Less: Anatomy-Aware Diffusion for Contrast Enhancement. CoRR abs/2512.07251 (2025)
[i145]
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  - journals/corr/abs-2512-14366
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Julian McGinnis, Florian A. Hölzl, Suprosanna Shit, Florentin Bieder, Paul Friedrich, Mark Mühlau, Bjoern H. Menze, Daniel Rueckert, Benedikt Wiestler:
Optimizing Rank for High-Fidelity Implicit Neural Representations. CoRR abs/2512.14366 (2025)
[i144]
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  - journals/corr/abs-2512-15921
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Lena Giebeler, Deepa Krishnaswamy, David Clunie, Jakob Wasserthal, Lalith Kumar Shiyam Sundar, Andres Diaz-Pinto, Klaus H. Maier-Hein, Murong Xu, Bjoern H. Menze, Steven D. Pieper, Ron Kikinis, Andrey Fedorov:
In search of truth: Evaluating concordance of AI-based anatomy segmentation models. CoRR abs/2512.15921 (2025)
2024
[j48]
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Hakim Baazaoui, Stefan T. Engelter, Henrik Gensicke, Lukas S. Enz, Marios Psychogios, Matthias Mutke, Patrik Michel, Davide Strambo, Alexander Salerno, Henk A. Marquering, Paul H. J. Nederkoorn, Nabila Wali, Stephanie Tanadini-Lang, Björn H. Menze, Ezequiel de la Rosa, Kaiyuan Yang, Gian Marco De Marchis, Tolga D. Dittrich, Francesco Valletta, Manon Germann, Carlo W. Cereda, João Pedro Marto, Lisa Herzog, Patrick Hirschi, Zsolt Kulcsar, Susanne Wegener:
The Multicentre Acute ischemic stroke imaGIng and Clinical data (MAGIC) repository: rationale and blueprint. Frontiers Neuroinformatics 18 (2024)
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Carole H. Sudre, Kimberlin M. H. van Wijnen, Florian Dubost, Hieab Adams, David Atkinson, Frederik Barkhof, Mahlet A. Birhanu, Esther E. Bron, Robin Camarasa, Nish Chaturvedi, Yuan Chen, Zihao Chen, Shuai Chen, Qi Dou, Tavia E. Evans, Ivan Ezhov, Haojun Gao, Marta Gironés-Sangüesa, Juan Domingo Gispert, Beatriz Gomez Anson, Alun D. Hughes, Mohammad Arfan Ikram, Silvia Ingala, Hans Rolf Jäger, Florian Kofler, Hugo J. Kuijf, Denis Kutnar, Minho Lee, Bo Li, Luigi Lorenzini, Bjoern H. Menze, José Luis Molinuevo, Yiwei Pan, Élodie Puybareau, Rafael Rehwald, Ruisheng Su, Pengcheng Shi, Lorna Smith, Therese Tillin, Guillaume Tochon, Hélène Urien, Bas H. M. van der Velden, Isabelle F. van der Velpen, Benedikt Wiestler, Frank J. Wolters, Pinar Yilmaz, Marius de Groot, Meike W. Vernooij, Marleen de Bruijne:
Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021. Medical Image Anal. 91: 103029 (2024)
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Tamaz Amiranashvili, David Lüdke, Hongwei Bran Li, Stefan Zachow, Bjoern H. Menze:
Learning continuous shape priors from sparse data with neural implicit functions. Medical Image Anal. 94: 103099 (2024)
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Shadi Albarqouni, Christian F. Baumgartner, Qi Dou, Ender Konukoglu, Bjoern H. Menze, Archana Venkataraman:
Editorial for the Special Issue on the 2022 Medical Imaging with Deep Learning Conference. Medical Image Anal. 98: 103308 (2024)
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Lucas Fidon, Michael Aertsen, Florian Kofler, Andrea Bink, Anna L. David, Thomas Deprest, Doaa Emam, Frédéric Guffens, András Jakab, Gregor Kasprian, Patric Kienast, Andrew Melbourne, Bjoern H. Menze, Nada Mufti, Ivana Pogledic, Daniela Prayer, Marlene Stuempflen, Esther Van Elslander, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
A Dempster-Shafer Approach to Trustworthy AI With Application to Fetal Brain MRI Segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 46(5): 3784-3795 (2024)
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Peng Tang, Xintong Yan, Yang Nan, Xiaobin Hu, Bjoern H. Menze, Sebastian Krammer, Tobias Lasser:
Joint-individual fusion structure with fusion attention module for multi-modal skin cancer classification. Pattern Recognit. 154: 110604 (2024)
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Linus Kreitner, Johannes C. Paetzold, Nikolaus Rauch, Chen Chen, Ahmed M. Hagag, Alaa E. Fayed, Sobha Sivaprasad, Sebastian Rausch, Julian Weichsel, Bjoern H. Menze, Matthias Harders, Benjamin Knier, Daniel Rueckert, Martin J. Menten:
Synthetic Optical Coherence Tomography Angiographs for Detailed Retinal Vessel Segmentation Without Human Annotations. IEEE Trans. Medical Imaging 43(6): 2061-2073 (2024)
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Hailong He, Johannes C. Paetzold, Nils Börner, Erik Riedel, Stefan Gerl, Simon Schneider, Chiara Fisher, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Daniel Rückert, Juan Aguirre, Tilo Biedermann, Ulf Darsow, Bjoern H. Menze, Vasilis Ntziachristos:
Machine Learning Analysis of Human Skin by Optoacoustic Mesoscopy for Automated Extraction of Psoriasis and Aging Biomarkers. IEEE Trans. Medical Imaging 43(6): 2074-2085 (2024)
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Francesco Girlanda, Olga V. Demler, Bjoern H. Menze, Neda Davoudi:
Enhancing Cardiovascular Disease Prediction through Multi-Modal Self-Supervised Learning. BMVC 2024
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Ibrahim Ethem Hamamci, Sezgin Er, Anjany Sekuboyina, Enis Simsar, Alperen Tezcan, Ayse Gulnihan Simsek, Sevval Nil Esirgun, Furkan Almas, Irem Dogan, Muhammed Furkan Dasdelen, Chinmay Prabhakar, Hadrien Reynaud, Sarthak Pati, Christian Bluethgen, Mehmet Kemal Özdemir, Bjoern H. Menze:
GenerateCT: Text-Conditional Generation of 3D Chest CT Volumes. ECCV (79) 2024: 126-143
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Tanveer Hannan, Rajat Koner, Maximilian Bernhard, Suprosanna Shit, Bjoern H. Menze, Volker Tresp, Matthias Schubert, Thomas Seidl:
GRAtt-VIS: Gated Residual Attention for Video Instance Segmentation. ICPR (16) 2024: 268-282
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Perla Mayo, Matteo Cencini, Ketan Fatania, Carolin M. Pirkl, Marion I. Menzel, Bjoern H. Menze, Michela Tosetti, Mohammad Golbabaee:
Deep Image Priors for Magnetic Resonance Fingerprinting with Pretrained Bloch-Consistent Denoising Autoencoders. ISBI 2024: 1-4
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Chinmay Prabhakar, Suprosanna Shit, Fabio Musio, Kaiyuan Yang, Tamaz Amiranashvili, Johannes C. Paetzold, Hongwei Bran Li, Bjoern H. Menze:
3D Vessel Graph Generation Using Denoising Diffusion. MICCAI (11) 2024: 3-13
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Alicia Durrer, Julia Wolleb, Florentin Bieder, Paul Friedrich, Lester Melie-García, Mario Ocampo-Pineda, Cosmin I. Bercea, Ibrahim Ethem Hamamci, Benedikt Wiestler, Marie Piraud, Özgür Yaldizli, Cristina Granziera, Bjoern H. Menze, Philippe C. Cattin, Florian Kofler:
Denoising Diffusion Models for 3D Healthy Brain Tissue Inpainting. DGM4MICCAI@MICCAI 2024: 87-97
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Yuqing Huang, Bastian Wittmann, Olga V. Demler, Bjoern H. Menze, Neda Davoudi:
Predicting Stroke Through Retinal Graphs and Multimodal Self-supervised Learning. LDTM/MMMI/ML4MHD/ML-CDS@MICCAI 2024: 223-234
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Malte Tölle, Fernando Navarro, Sebastian Eble, Ivo Wolf, Bjoern H. Menze, Sandy Engelhardt:
FUNAvg: Federated Uncertainty Weighted Averaging for Datasets with Diverse Labels. MICCAI (10) 2024: 405-415
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Ibrahim Ethem Hamamci, Sezgin Er, Bjoern H. Menze:
CT2Rep: Automated Radiology Report Generation for 3D Medical Imaging. MICCAI (12) 2024: 476-486
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Bastian Wittmann, Lukas Glandorf, Johannes C. Paetzold, Tamaz Amiranashvili, Thomas Wälchli, Daniel Razansky, Bjoern H. Menze:
Simulation-Based Segmentation of Blood Vessels in Cerebral 3D OCTA Images. MICCAI (8) 2024: 645-655
[c140]
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Robert Graf, Hendrik Kristian Möller, Julian McGinnis, Sebastian Rühling, Maren Weihrauch, Matan Atad, Suprosanna Shit, Bjoern H. Menze, Mark Mühlau, Johannes C. Paetzold, Daniel Rueckert, Jan Kirschke:
Modeling the acquisition shift between axial and sagittal MRI for diffusion superresolution to enable axial spine segmentation. MIDL 2024: 520-537
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Corentin Royer, Bjoern H. Menze, Anjany Sekuboyina:
MultiMedEval: A Benchmark and a Toolkit for Evaluating Medical Vision-Language Models. MIDL 2024: 1310-1327
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Aswathi Varma, Suprosanna Shit, Chinmay Prabhakar, Daniel Scholz, Hongwei Bran Li, Bjoern H. Menze, Daniel Rueckert, Benedikt Wiestler:
VariViT: A Vision Transformer for Variable Image Sizes. MIDL 2024: 1571-1583
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Perla Mayo, Matteo Cencini, Carolin M. Pirkl, Marion I. Menzel, Michela Tosetti, Bjoern H. Menze, Mohammad Golbabaee:
StoDIP: Efficient 3D MRF Image Reconstruction with Deep Image Priors and Stochastic Iterations. MLMI@MICCAI (2) 2024: 128-137
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Michal Balcerak, Tamaz Amiranashvili, Andreas Wagner, Jonas Weidner, Petr Karnakov, Johannes C. Paetzold, Ivan Ezhov, Petros Koumoutsakos, Benedikt Wiestler, Bjoern H. Menze:
Physics-Regularized Multi-Modal Image Assimilation for Brain Tumor Localization. NeurIPS 2024
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Bastian Wittmann, Johannes C. Paetzold, Chinmay Prabhakar, Daniel Rueckert, Bjoern H. Menze:
Link Prediction for Flow-Driven Spatial Networks. WACV 2024: 2460-2469
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  - journals/corr/abs-2402-09262
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Corentin Royer, Bjoern H. Menze, Anjany Sekuboyina:
MultiMedEval: A Benchmark and a Toolkit for Evaluating Medical Vision-Language Models. CoRR abs/2402.09262 (2024)
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  - journals/corr/abs-2402-16368
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Hendrik Kristian Möller, Robert Graf, Joachim Schmitt, Benjamin Keinert, Matan Atad, Anjany Sekuboyina, Felix Streckenbach, Hanna Schön, Florian Kofler, Thomas Kröncke, Stefanie Bette, Stefan Willich, Thomas Keil, Thoralf Niendorf, Tobias Pischon, Beate Endemann, Bjoern H. Menze, Daniel Rueckert, Jan S. Kirschke:
SPINEPS - Automatic Whole Spine Segmentation of T2-weighted MR images using a Two-Phase Approach to Multi-class Semantic and Instance Segmentation. CoRR abs/2402.16368 (2024)
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  - journals/corr/abs-2403-04500
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Jonas Weidner, Ivan Ezhov, Michal Balcerak, Marie-Christin Metz, Sergey Litvinov, Sebastian Kaltenbach, Leonhard F. Feiner, Laurin Lux, Florian Kofler, Jana Lipková, Jonas Latz, Daniel Rueckert, Bjoern H. Menze, Benedikt Wiestler:
A Learnable Prior Improves Inverse Tumor Growth Modeling. CoRR abs/2403.04500 (2024)
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  - journals/corr/abs-2403-06801
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Ibrahim Ethem Hamamci, Sezgin Er, Bjoern H. Menze:
CT2Rep: Automated Radiology Report Generation for 3D Medical Imaging. CoRR abs/2403.06801 (2024)
[i139]
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  - journals/corr/abs-2403-07116
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Bastian Wittmann, Lukas Glandorf, Johannes C. Paetzold, Tamaz Amiranashvili, Thomas Wälchli, Daniel Razansky, Bjoern H. Menze:
Simulation-Based Segmentation of Blood Vessels in Cerebral 3D OCTA Images. CoRR abs/2403.07116 (2024)
[i138]
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  - journals/corr/abs-2403-14499
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Alicia Durrer, Julia Wolleb, Florentin Bieder, Paul Friedrich, Lester Melie-García, Mario Ocampo-Pineda, Cosmin I. Bercea, Ibrahim Ethem Hamamci, Benedikt Wiestler, Marie Piraud, Özgür Yaldizli, Cristina Granziera, Bjoern H. Menze, Philippe C. Cattin, Florian Kofler:
Denoising Diffusion Models for 3D Healthy Brain Tissue Inpainting. CoRR abs/2403.14499 (2024)
[i137]
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  - journals/corr/abs-2403-17834
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Ibrahim Ethem Hamamci, Sezgin Er, Furkan Almas, Ayse Gulnihan Simsek, Sevval Nil Esirgun, Irem Dogan, Muhammed Furkan Dasdelen, Bastian Wittmann, Enis Simsar, Mehmet Simsar, Emine Bensu Erdemir, Abdullah Alanbay, Anjany Sekuboyina, Berkan Lafci, Mehmet Kemal Özdemir, Bjoern H. Menze:
A foundation model utilizing chest CT volumes and radiology reports for supervised-level zero-shot detection of abnormalities. CoRR abs/2403.17834 (2024)
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  - journals/corr/abs-2403-19425
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Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew, Alexandre Hutton, Roland Wiest, Johannes Kaesmacher, Uta Hanning, Arsany Hakim, Richard Zubal, Waldo Valenzuela, David Robben, Diana Maria Sima, Vincenzo Anania, Arne Brys, James A. Meakin, Anne Mickan, Gabriel Broocks, Christian Heitkamp, Shengbo Gao, Kongming Liang, Ziji Zhang, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Pooya Ashtari, Sabine Van Huffel, Hyun-su Jeong, Chiho Yoon, Chulhong Kim, Jiayu Huo, Sébastien Ourselin, Rachel Sparks, Albert Clèrigues, Arnau Oliver, Xavier Lladó, Liam F. Chalcroft, Ioannis Pappas, Jeroen Bertels, Ewout Heylen, Juliette Moreau, Nima Hatami, Carole Frindel, Abdul Qayyum, Moona Mazher, Domenec Puig, Shao-Chieh Lin, Chun-Jung Juan, Tianxi Hu, Lyndon Boone, Maged Goubran, Yi-Jui Liu, Susanne Wegener, Florian Kofler, Ivan Ezhov, Suprosanna Shit, Moritz Roman Hernandez Petzsche, Bjoern H. Menze, Jan S. Kirschke, Benedikt Wiestler:
A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge. CoRR abs/2403.19425 (2024)
[i135]
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  - journals/corr/abs-2404-02830
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Poulami Sinhamahapatra, Suprosanna Shit, Anjany Sekuboyina, Malek El Husseini, David Schinz, Nicolas Lenhart, Bjoern H. Menze, Jan Kirschke, Karsten Roscher, Stephan Günnemann:
Enhancing Interpretability of Vertebrae Fracture Grading using Human-interpretable Prototypes. CoRR abs/2404.02830 (2024)
[i134]
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  - journals/corr/abs-2404-03618
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Haozhe Luo, Ziyu Zhou, Corentin Royer, Anjany Sekuboyina, Bjoern H. Menze:
DeViDe: Faceted medical knowledge for improved medical vision-language pre-training. CoRR abs/2404.03618 (2024)
[i133]
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  - journals/corr/abs-2404-15009
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Anahita Fathi Kazerooni, Nastaran Khalili, Deep Gandhi, Xinyang Liu, Zhifan Jiang, Syed Muhammed Anwar, Jake Albrecht, Maruf Adewole, Udunna Anazodo, Hannah Anderson, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Austin J. Borja, Evan Calabrese, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Ariana Familiar, Keyvan Farahani, Anurag Gottipati, Debanjan Haldar, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Johansen, Blaise V. Jones, Neda Khalili, Florian Kofler, Dominic LaBella, Hollie Anne Lai, Koen Van Leemput, Hongwei Bran Li, Nazanin Maleki, Aaron S. McAllister, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Khanak K. Nandolia, Julija Pavaine, Marie Piraud, Tina Poussaint, Sanjay P. Prabhu, Zachary Reitman, Andres Felipe Rodriguez, Jeffrey D. Rudie, Mariana Sanchez-Montano, Ibraheem Salman Shaikh, Lubdha M. Shah, Nakul Sheth, Russell T. Shinohara, Wenxin Tu, Karthik Viswanathan, Chunhao Wang, Jeffrey B. Ware, Benedikt Wiestler, Walter I. Wiggins, Anna Zapaishchykova, Mariam Aboian, Miriam Bornhorst, Peter de Blank, Michelle Deutsch, Maryam Fouladi, Lindsey Hoffman, Benjamin H. Kann, Margot Lazow, Leonie Mikael, Ali Nabavizadeh, Roger J. Packer, Spyridon Bakas, Adam C. Resnick, Brian Rood, Arastoo Vossough, Marius George Linguraru:
The Brain Tumor Segmentation in Pediatrics (BraTS-PEDs) Challenge: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs). CoRR abs/2404.15009 (2024)
[i132]
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  - journals/corr/abs-2405-09787
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Dominic LaBella, Ujjwal Baid, Omaditya Khanna, Shan McBurney-Lin, Ryan McLean, Pierre Nedelec, Arif Rashid, Nourel Hoda Tahon, Talissa Altes, Radhika Bhalerao, Yaseen Dhemesh, Devon Godfrey, Fathi Hilal, Scott Floyd, Anastasia Janas, Anahita Fathi Kazerooni, John Kirkpatrick, Collin Kent, Florian Kofler, Kevin Leu, Nazanin Maleki, Bjoern H. Menze, Maxence Pajot, Zachary J. Reitman, Jeffrey D. Rudie, Rachit Saluja, Yury Velichko, Chunhao Wang, Pranav Warman, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Syed Muhammad Anwar, Timothy Bergquist, Sully F. Chen, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Nastaran Khalili, Juan Eugenio Iglesias, Zhifan Jiang, Elaine Johanson, Koen Van Leemput, Hongwei Bran Li, Marius George Linguraru, Xinyang Liu, Aria Mahtabfar, Zeke Meier, Ahmed W. Moawad, John Mongan, Marie Piraud, Russell Takeshi Shinohara, Walter F. Wiggins, Aly H. Abayazeed, Rachel Akinola, András Jakab, Michel Bilello, Maria Correia de Verdier, Priscila Crivellaro, Christos Davatzikos, Keyvan Farahani, John B. Freymann, Christopher Hess, Raymond Y. Huang, Philipp Lohmann, Mana Moassefi, Matthew W. Pease, Philipp Vollmuth, Nico Sollmann, David Diffley, Khanak K. Nandolia, Daniel I. Warren, Ali Hussain, Pascal Fehringer, Yulia Bronstein, Lisa Deptula, Evan G. Stein, Mahsa Taherzadeh, Eduardo Portela de Oliveira, Aoife Haughey, Marinos Kontzialis, Luca Saba, Benjamin Turner, Melanie M. T. Brüßeler, Shehbaz Ansari, Athanasios Gkampenis, David Maximilian Weiss, Aya Mansour, Islam H. Shawali, Nikolay Yordanov, Joel M. Stein, Roula Hourani, Mohammed Yahya Moshebah, Ahmed Magdy Abouelatta, Tanvir Rizvi, Klara Willms, Dann C. Martin, Abdullah Okar:
Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge. CoRR abs/2405.09787 (2024)
[i131]
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Hongwei Bran Li, Cheng Ouyang, Tamaz Amiranashvili, Matthew S. Rosen, Bjoern H. Menze, Juan Eugenio Iglesias:
Probabilistic Contrastive Learning with Explicit Concentration on the Hypersphere. CoRR abs/2405.16460 (2024)
[i130]
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Maria Correia de Verdier, Rachit Saluja, Louis Gagnon, Dominic LaBella, Ujjwal Baid, Nourel Hoda Tahon, Martha Foltyn-Dumitru, Jikai Zhang, Maram Alafif, Saif Baig, Ken Chang, Gennaro D'Anna, Lisa Deptula, Diviya Gupta, Muhammad Ammar Haider, Ali Hussain, Michael Iv, Marinos Kontzialis, Paul Manning, Farzan Moodi, Teresa Nunes, Aaron Simon, Nico Sollmann, David Vu, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Rongrong Chai, Verena Chung, Shahriar Faghani, Keyvan Farahani, Anahita Fathi Kazerooni, Juan Eugenio Iglesias, Florian Kofler, Hongwei Li, Marius George Linguraru, Bjoern H. Menze, Ahmed W. Moawad, Yury Velichko, Benedikt Wiestler, Talissa Altes, Patil Basavasagar, Martin Bendszus, Gianluca Brugnara, Jaeyoung Cho, Yaseen Dhemesh, Brandon K. K. Fields, Filip Garrett, Jaime Gass, Lubomir M. Hadjiiski, Jona A. Hattangadi-Gluth, Christopher Hess, Jessica L. Houk, Edvin Isufi, Lester J. Layfield, George Mastorakos, John Mongan, Pierre Nedelec, Uyen Nguyen, Sebastian Oliva, Matthew W. Pease, Aditya Rastogi, Jason Sinclair, Robert X. Smith, Leo P. Sugrue, Jonathan Thacker, Igor Vidic, Javier E. Villanueva-Meyer, Nathan S. White, Mariam Aboian, Gian Marco Conte, Anders M. Dale, Mert R. Sabuncu, Tyler M. Seibert, Brent Weinberg, Aly H. Abayazeed, Raymond Y. Huang, Sevcan Turk, Andreas M. Rauschecker, Nikdokht Farid, Philipp Vollmuth, Ayman Nada, Spyridon Bakas, Evan Calabrese, Jeffrey D. Rudie:
The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI. CoRR abs/2405.18368 (2024)
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Dominic LaBella, Katherine Schumacher, Michael Mix, Kevin Leu, Shan McBurney-Lin, Pierre Nedelec, Javier E. Villanueva-Meyer, Jonathan Shapey, Tom Vercauteren, Kazumi Chia, Omar Al-Salihi, Justin Leu, Lia Halasz, Yury Velichko, Chunhao Wang, John Kirkpatrick, Scott Floyd, Zachary J. Reitman, Trey Mullikin, Ulas Bagci, Sean Sachdev, Jona A. Hattangadi-Gluth, Tyler M. Seibert, Nikdokht Farid, Connor Puett, Matthew W. Pease, Kevin Shiue, Syed Muhammad Anwar, Shahriar Faghani, Muhammad Ammar Haider, Pranav I. Warman, Jake Albrecht, András Jakab, Mana Moassefi, Verena Chung, Alejandro Aristizabal, Alexandros Karargyris, Hasan Kassem, Sarthak Pati, Micah J. Sheller, Christina Huang, Aaron Coley, Siddharth Ghanta, Alex Schneider, Conrad Sharp, Rachit Saluja, Florian Kofler, Philipp Lohmann, Philipp Vollmuth, Louis Gagnon, Maruf Adewole, Hongwei Bran Li, Anahita Fathi Kazerooni, Nourel Hoda Tahon, Udunna Anazodo, Ahmed W. Moawad, Bjoern H. Menze, Marius George Linguraru, Mariam Aboian, Benedikt Wiestler, Ujjwal Baid, Gian Marco Conte, Andreas M. Rauschecker, Ayman Nada, Aly H. Abayazeed, Raymond Y. Huang, Maria Correia de Verdier, Jeffrey D. Rudie, Spyridon Bakas, Evan Calabrese:
Brain Tumor Segmentation (BraTS) Challenge 2024: Meningioma Radiotherapy Planning Automated Segmentation. CoRR abs/2405.18383 (2024)
[i128]
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Hongwei Bran Li, Fernando Navarro, Ivan Ezhov, Amirhossein Bayat, Dhritiman Das, Florian Kofler, Suprosanna Shit, Diana Waldmannstetter, Johannes C. Paetzold, Xiaobin Hu, Benedikt Wiestler, Lucas Zimmer, Tamaz Amiranashvili, Chinmay Prabhakar, Christoph Berger, Jonas Weidner, Michelle Alonso-Basanta, Arif Rashid, Ujjwal Baid, Wesam Adel, Deniz Alis, Bhakti Baheti, Yingbin Bai, Ishaan Bhat, Sabri Can Cetindag, Wenting Chen, Li Cheng, Prasad Dutande, Lara Dular, Mustafa A. Elattar, Ming Feng, Shengbo Gao, Henkjan Huisman, Weifeng Hu, Shubham Innani, Wei Jiat, Davood Karimi, Hugo J. Kuijf, Jin Tae Kwak, Hoang Long Le, Xiang Lia, Huiyan Lin, Tongliang Liu, Jun Ma, Kai Ma, Ting Ma, Ilkay Öksüz, Robbie Holland, Arlindo L. Oliveira, Jimut Bahan Pal, Xuan Pei, Maoying Qiao, Anindo Saha, Raghavendra Selvan, Linlin Shen, João Lourenço Silva, Ziga Spiclin, Sanjay N. Talbar, Dadong Wang, Wei Wang, Xiong Wang, Yin Wang, Ruiling Xia, Kele Xu, Yanwu Yan, Mert Yergin, Shuang Yu, Lingxi Zeng, YingLin Zhang, Jiachen Zhao, Yefeng Zheng, Martin Zukovec, Richard K. G. Do, Anton S. Becker, Amber L. Simpson, Ender Konukoglu, András Jakab, Spyridon Bakas, Leo Joskowicz, Bjoern H. Menze:
QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge. CoRR abs/2405.18435 (2024)
[i127]
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Chinmay Prabhakar, Suprosanna Shit, Fabio Musio, Kaiyuan Yang, Tamaz Amiranashvili, Johannes C. Paetzold, Hongwei Bran Li, Bjoern H. Menze:
3D Vessel Graph Generation Using Denoising Diffusion. CoRR abs/2407.05842 (2024)
[i126]
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Malte Tölle, Fernando Navarro, Sebastian Eble, Ivo Wolf, Bjoern H. Menze, Sandy Engelhardt:
FUNAvg: Federated Uncertainty Weighted Averaging for Datasets with Diverse Labels. CoRR abs/2407.07488 (2024)
[i125]
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  - journals/corr/abs-2407-08855
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Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu, Debanjan Haldar, Zhifan Jiang, Anna Zapaishchykova, Julija Pavaine, Lubdha M. Shah, Blaise V. Jones, Nakul Sheth, Sanjay P. Prabhu, Aaron S. McAllister, Wenxin Tu, Khanak K. Nandolia, Andres Felipe Rodriguez, Ibraheem Salman Shaikh, Mariana Sanchez-Montano, Hollie Anne Lai, Maruf Adewole, Jake Albrecht, Udunna Anazodo, Hannah Anderson, Syed Muhammed Anwar, Alejandro Aristizabal, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Austin J. Borja, Evan Calabrese, Verena Chung, Gian Marco Conte, James A. Eddy, Ivan Ezhov, Ariana M. Familiar, Keyvan Farahani, Deep Gandhi, Anurag Gottipati, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Elaine, Alexandros Karargyris, Hasan Kassem, Neda Khalili, Florian Kofler, Dominic LaBella, Koen Van Leemput, Hongwei Li, Nazanin Maleki, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Sarthak Pati, Marie Piraud, Tina Poussaint, Zachary J. Reitman, Jeffrey D. Rudie, Rachit Saluja, Micah J. Sheller, Russell Takeshi Shinohara, Karthik Viswanathan, Chunhao Wang, Benedikt Wiestler, Walter F. Wiggins, Christos Davatzikos, Phillip B. Storm, Miriam Bornhorst, Roger J. Packer, Trent Hummel, Peter de Blank, Lindsey Hoffman, Mariam Aboian, Ali Nabavizadeh, Jeffrey B. Ware, Benjamin H. Kann, Brian Rood, Adam C. Resnick, Spyridon Bakas, Arastoo Vossough, Marius George Linguraru:
BraTS-PEDs: Results of the Multi-Consortium International Pediatric Brain Tumor Segmentation Challenge 2023. CoRR abs/2407.08855 (2024)
[i124]
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Perla Mayo, Matteo Cencini, Ketan Fatania, Carolin M. Pirkl, Marion I. Menzel, Bjoern H. Menze, Michela Tosetti, Mohammad Golbabaee:
Deep Image Priors for Magnetic Resonance Fingerprinting with pretrained Bloch-consistent denoising autoencoders. CoRR abs/2407.19866 (2024)
[i123]
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  - journals/corr/abs-2408-02367
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Perla Mayo, Matteo Cencini, Carolin M. Pirkl, Marion I. Menzel, Michela Tosetti, Bjoern H. Menze, Mohammad Golbabaee:
StoDIP: Efficient 3D MRF image reconstruction with deep image priors and stochastic iterations. CoRR abs/2408.02367 (2024)
[i122]
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Ezequiel de la Rosa, Ruisheng Su, Mauricio Reyes, Roland Wiest, Evamaria Olga Riedel, Florian Kofler, Kaiyuan Yang, Hakim Baazaoui, David Robben, Susanne Wegener, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze:
ISLES'24: Improving final infarct prediction in ischemic stroke using multimodal imaging and clinical data. CoRR abs/2408.10966 (2024)
[i121]
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Evamaria Olga Riedel, Ezequiel de la Rosa, The Anh Baran, Moritz Roman Hernandez Petzsche, Hakim Baazaoui, Kaiyuan Yang, David Robben, Joaquin Oscar Seia, Roland Wiest, Mauricio Reyes, Ruisheng Su, Claus Zimmer, Tobias Boeckh-Behrens, Maria Berndt, Bjoern H. Menze, Benedikt Wiestler, Susanne Wegener, Jan S. Kirschke:
ISLES 2024: The first longitudinal multimodal multi-center real-world dataset in (sub-)acute stroke. CoRR abs/2408.11142 (2024)
[i120]
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John LaMaster, Dhritiman Das, Florian Kofler, Jason C. Crane, Yan Li, Tobias Lasser, Bjoern H. Menze:
Improving the Precision of CNNs for Magnetic Resonance Spectral Modeling. CoRR abs/2409.06609 (2024)
[i119]
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  - journals/corr/abs-2409-20409
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Michal Balcerak, Tamaz Amiranashvili, Andreas Wagner, Jonas Weidner, Petr Karnakov, Johannes C. Paetzold, Ivan Ezhov, Petros Koumoutsakos, Benedikt Wiestler, Bjoern H. Menze:
Physics-Regularized Multi-Modal Image Assimilation for Brain Tumor Localization. CoRR abs/2409.20409 (2024)
[i118]
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  - journals/corr/abs-2410-23318
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Perla Mayo, Carolin M. Pirkl, Alin Achim, Bjoern H. Menze, Mohammad Golbabaee:
Improved Patch Denoising Diffusion Probabilistic Models for Magnetic Resonance Fingerprinting. CoRR abs/2410.23318 (2024)
[i117]
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  - journals/corr/abs-2411-05597
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Yuqing Huang, Bastian Wittmann, Olga V. Demler, Bjoern H. Menze, Neda Davoudi:
Predicting Stroke through Retinal Graphs and Multimodal Self-supervised Learning. CoRR abs/2411.05597 (2024)
[i116]
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Francesco Girlanda, Olga V. Demler, Bjoern H. Menze, Neda Davoudi:
Enhancing Cardiovascular Disease Prediction through Multi-Modal Self-Supervised Learning. CoRR abs/2411.05900 (2024)
[i115]
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  - journals/corr/abs-2411-09822
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Camille Delgrange, Olga V. Demler, Samia Mora, Bjoern H. Menze, Ezequiel de la Rosa, Neda Davoudi:
A Self-Supervised Model for Multi-modal Stroke Risk Prediction. CoRR abs/2411.09822 (2024)
[i114]
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  - journals/corr/abs-2411-17386
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Bastian Wittmann, Yannick Wattenberg, Tamaz Amiranashvili, Suprosanna Shit, Bjoern H. Menze:
vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation. CoRR abs/2411.17386 (2024)
[i113]
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  - journals/corr/abs-2412-13811
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Jonas Weidner, Michal Balcerak, Ivan Ezhov, André Datchev, Laurin Lux, Lucas Zimmer, Daniel Rückert, Bjoern H. Menze, Benedikt Wiestler:
Spatial Brain Tumor Concentration Estimation for Individualized Radiotherapy Planning. CoRR abs/2412.13811 (2024)
2023
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Ivan Ezhov, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin J. Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze:
Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling. Medical Image Anal. 83: 102672 (2023)
[j39]
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  - journals/mia/BilicCLVBKSJMCL23
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Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze:
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84: 102680 (2023)
[j38]
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Kelly Payette, Hongwei Bran Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
Fetal brain tissue annotation and segmentation challenge results. Medical Image Anal. 88: 102833 (2023)
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Diana Waldmannstetter, Benedikt Wiestler, Julian Schwarting, Ivan Ezhov, Marie Metz, Spyridon Bakas, Bhakti Baheti, Satrajit Chakrabarty, Daniel Rueckert, Jan S. Kirschke, Rolf A. Heckemann, Marie Piraud, Bjoern H. Menze, Florian Kofler:
Primitive Simultaneous Optimization of Similarity Metrics for Image Registration. BrainLes/SWITCH@MICCAI 2023: 57-68
[c133]
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  - conf/cvpr/EisenmannRWTIAA23
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Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, A. Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patino, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin M. H. van Wijnen, Martin Wagner, D. Wei, Amine Yamlahi, Moi Hoon Yap, C. Yuan, Maximilian Zenk, A. Zia, David Zimmerer, Dogu Baran Aydogan, Binod Bhattarai, Louise Bloch, Raphael Brüngel, J. Cho, C. Choi, Qi Dou, Ivan Ezhov, Christoph M. Friedrich, C. Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García-Faura, Maria Grammatikopoulou, S. Hong, Mostafa Jahanifar, I. Jang, Abdolrahim Kadkhodamohammadi, I. Kang, Florian Kofler, S. Kondo, Hugo Jaco Kuijf, M. Li, M. Luu, Tomaz Martincic, Pedro Morais, Mohamed A. Naser, Bruno Oliveira, David Owen, S. Pang, J. Park, S. Park, Szymon Plotka, Élodie Puybareau, Nasir M. Rajpoot, K. Ryu, Numan Saeed, Adam Shephard, Pengcheng Shi, Dejan Stepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Hélène Urien, João L. Vilaça, Kareem A. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, Benedikt Wiestler, Marek Wodzinski, F. Xia, J. Xie, Z. Xiong, Sen Yang, Y. Yang, Zixuan Zhao, Klaus H. Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein:
Why is the Winner the Best? CVPR 2023: 19955-19966
[c132]
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Nico Stucki, Johannes C. Paetzold, Suprosanna Shit, Bjoern H. Menze, Ulrich Bauer:
Topologically Faithful Image Segmentation via Induced Matching of Persistence Barcodes. ICML 2023: 32698-32727
[c131]
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Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Bran Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan C. Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation. IPMI 2023: 755-767
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Florian Kofler, Johannes Wahle, Ivan Ezhov, Sophia J. Wagner, Rami Al-Maskari, Emilia Gryska, Mihail I. Todorov, Christina Bukas, Felix Meissen, Tingying Peng, Ali Ertürk, Daniel Rueckert, Rolf A. Heckemann, Jan Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze, Marie Piraud:
Approaching Peak Ground Truth. ISBI 2023: 1-6
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Anjany Sekuboyina, Jannik Irmai, Suprosanna Shit, Jan Kirschke, Bjoern Andres, Bjoern H. Menze:
Pushing the Limits of an FCN and A CRF Towards Near-Ideal Vertebrae Labelling. ISBI 2023: 1-5
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Chinmay Prabhakar, Hongwei Bran Li, Johannes C. Paetzold, Timo Loehr, Chen Niu, Mark Mühlau, Daniel Rueckert, Benedikt Wiestler, Bjoern H. Menze:
Self-pruning Graph Neural Network for Predicting Inflammatory Disease Activity in Multiple Sclerosis from Brain MR Images. MICCAI (8) 2023: 226-236
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Ibrahim Ethem Hamamci, Sezgin Er, Enis Simsar, Anjany Sekuboyina, Mustafa Gundogar, Bernd Stadlinger, Albert Mehl, Bjoern H. Menze:
Diffusion-Based Hierarchical Multi-label Object Detection to Analyze Panoramic Dental X-Rays. MICCAI (6) 2023: 389-399
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Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Ivan Ezhov, Rajat Koner, Hongwei Li, Florian Sebastian Kofler, Bjoern H. Menze:
Vesselformer: Towards Complete 3D Vessel Graph Generation from Images. MIDL 2023: 320-331
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Chinmay Prabhakar, Hongwei Li, Jiancheng Yang, Suprosanna Shit, Benedikt Wiestler, Bjoern H. Menze:
ViT-AE++: Improving Vision Transformer Autoencoder for Self-supervised Medical Image Representations. MIDL 2023: 666-679
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  - journals/corr/abs-2301-00243
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Florian Kofler, Johannes Wahle, Ivan Ezhov, Sophia J. Wagner, Rami Al-Maskari, Emilia Gryska, Mihail I. Todorov, Christina Bukas, Felix Meissen, Tingying Peng, Ali Ertürk, Daniel Rueckert, Rolf A. Heckemann, Jan Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze, Marie Piraud:
Approaching Peak Ground Truth. CoRR abs/2301.00243 (2023)
[i111]
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Chinmay Prabhakar, Hongwei Bran Li, Jiancheng Yang, Suprosanna Shit, Benedikt Wiestler, Bjoern H. Menze:
ViT-AE++: Improving Vision Transformer Autoencoder for Self-supervised Medical Image Representations. CoRR abs/2301.07382 (2023)
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  - journals/corr/abs-2302-01790
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Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein:
Understanding metric-related pitfalls in image analysis validation. CoRR abs/2302.01790 (2023)
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Ibrahim Ethem Hamamci, Sezgin Er, Enis Simsar, Anjany Sekuboyina, Mustafa Gundogar, Bernd Stadlinger, Albert Mehl, Bjoern H. Menze:
Diffusion-Based Hierarchical Multi-Label Object Detection to Analyze Panoramic Dental X-rays. CoRR abs/2303.06500 (2023)
[i108]
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Bastian Wittmann, Johannes C. Paetzold, Chinmay Prabhakar, Daniel Rueckert, Bjoern H. Menze:
Link Prediction for Flow-Driven Spatial Networks. CoRR abs/2303.14501 (2023)
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  - journals/corr/abs-2303-17719
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Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, Ali Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, et al.:
Why is the winner the best? CoRR abs/2303.17719 (2023)
[i106]
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Diana Waldmannstetter, Florian Kofler, Benedikt Wiestler, Julian Schwarting, Ivan Ezhov, Marie Metz, Daniel Rueckert, Jan S. Kirschke, Marie Piraud, Bjoern H. Menze:
Primitive Simultaneous Optimization of Similarity Metrics for Image Registration. CoRR abs/2304.01601 (2023)
[i105]
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Dominic LaBella, Maruf Adewole, Michelle Alonso-Basanta, Talissa Altes, Syed Muhammad Anwar, Ujjwal Baid, Timothy Bergquist, Radhika Bhalerao, Sully F. Chen, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Devon Godfrey, Fathi Hilal, Ariana Familiar, Keyvan Farahani, Juan Eugenio Iglesias, Zhifan Jiang, Elaine Johanson, Anahita Fathi Kazerooni, Collin Kent, John Kirkpatrick, Florian Kofler, Koen Van Leemput, Hongwei Bran Li, Xinyang Liu, Aria Mahtabfar, Shan McBurney-Lin, Ryan McLean, Zeke Meier, Ahmed W. Moawad, John Mongan, Pierre Nedelec, Maxence Pajot, Marie Piraud, Arif Rashid, Zachary Reitman, Russell Takeshi Shinohara, Yury Velichko, Chunhao Wang, Pranav I. Warman, Walter I. Wiggins, Mariam Aboian, Jake Albrecht, Udunna Anazodo, Spyridon Bakas, Adam E. Flanders, Anastasia Janas, Goldey Khanna, Marius George Linguraru, Bjoern H. Menze, Ayman Nada, Andreas M. Rauschecker, Jeffrey D. Rudie, Nourel Hoda Tahon, Javier E. Villanueva-Meyer, Benedikt Wiestler, Evan Calabrese:
The ASNR-MICCAI Brain Tumor Segmentation (BraTS) Challenge 2023: Intracranial Meningioma. CoRR abs/2305.07642 (2023)
[i104]
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Florian Kofler, Felix Meissen, Felix Steinbauer, Robert Graf, Eva Oswald, Ezequiel de la Rosa, Hongwei Bran Li, Ujjwal Baid, Florian A. Hölzl, Özgün Turgut, Izabela Horvath, Diana Waldmannstetter, Christina Bukas, Maruf Adewole, Syed Muhammad Anwar, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Gian Marco Conte, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Juan Eugenio Iglesias, Koen Van Leemput, Spyridon Bakas, Daniel Rueckert, Benedikt Wiestler, Ivan Ezhov, Marie Piraud, Bjoern H. Menze:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Local Synthesis of Healthy Brain Tissue via Inpainting. CoRR abs/2305.08992 (2023)
[i103]
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Hongwei Bran Li, Gian Marco Conte, Syed Muhammad Anwar, Florian Kofler, Koen Van Leemput, Marie Piraud, Ivan Ezhov, Felix Meissen, Maruf Adewole, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Thomas Yu, Ujjwal Baid, Spyridon Bakas, Marius George Linguraru, Bjoern H. Menze, Juan Eugenio Iglesias, Benedikt Wiestler:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn). CoRR abs/2305.09011 (2023)
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Ibrahim Ethem Hamamci, Sezgin Er, Enis Simsar, Alperen Tezcan, Ayse Gulnihan Simsek, Furkan Almas, Sevval Nil Esirgun, Hadrien Reynaud, Sarthak Pati, Christian Bluethgen, Bjoern H. Menze:
GenerateCT: Text-Guided 3D Chest CT Generation. CoRR abs/2305.16037 (2023)
[i101]
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Anahita Fathi Kazerooni, Nastaran Khalili, Xinyang Liu, Debanjan Haldar, Zhifan Jiang, Syed Muhammad Anwar, Jake Albrecht, Maruf Adewole, Udunna Anazodo, Hannah Anderson, Sina Bagheri, Ujjwal Baid, Timothy Bergquist, Evan Calabrese, Verena Chung, Gian Marco Conte, Farouk Dako, James A. Eddy, Ivan Ezhov, Ariana Familiar, Keyvan Farahani, Shuvanjan Haldar, Juan Eugenio Iglesias, Anastasia Janas, Elaine Johanson, Florian Kofler, Dominic LaBella, Koen Van Leemput, Hongwei Bran Li, Nazanin Maleki, Zeke Meier, Bjoern H. Menze, Ahmed W. Moawad, Marie Piraud, Tina Poussaint, Zachary Reitman, Jeffrey D. Rudie, Ibraheem Salman Shaikh, Russell Taki Shinohara, Wenxin Tu, Karthik Viswanathan, Chunhao Wang, Jeffrey B. Ware, Benedikt Wiestler, Walter I. Wiggins, Anna Zapaishchykova, Mariam Aboian, Miriam Bornhorst, Peter de Blank, Michelle Deutsch, Maryam Fouladi, Lindsey Hoffman, Benjamin H. Kann, Margot Lazow, Leonie Mikael, Ali Nabavizadeh, Roger J. Packer, Adam C. Resnick, Brian Rood, Arastoo Vossough, Spyridon Bakas, Marius George Linguraru:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs). CoRR abs/2305.17033 (2023)
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Tanveer Hannan, Rajat Koner, Maximilian Bernhard, Suprosanna Shit, Bjoern H. Menze, Volker Tresp, Matthias Schubert, Thomas Seidl:
GRAtt-VIS: Gated Residual Attention for Auto Rectifying Video Instance Segmentation. CoRR abs/2305.17096 (2023)
[i99]
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  - journals/corr/abs-2305-19112
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Ibrahim Ethem Hamamci, Sezgin Er, Enis Simsar, Atif Emre Yüksel, Sadullah Gultekin, Serife Damla Ozdemir, Kaiyuan Yang, Hongwei Bran Li, Sarthak Pati, Bernd Stadlinger, Albert Mehl, Mustafa Gundogar, Bjoern H. Menze:
DENTEX: An Abnormal Tooth Detection with Dental Enumeration and Diagnosis Benchmark for Panoramic X-rays. CoRR abs/2305.19112 (2023)
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Maruf Adewole, Jeffrey D. Rudie, Anu Gbadamosi, Oluyemisi Toyobo, Raymond Confidence, Dong Zhang, Olubukola Omidiji, Rachel Akinola, Mohammad Abba Suwaid, Adaobi Chiazor Emegoakor, Nancy Ojo, Kenneth Aguh, Chinasa Kalaiwo, Gabriel Babatunde, Afolabi Ogunleye, Yewande Gbadamosi, Kator Iorpagher, Evan Calabrese, Mariam Aboian, Marius George Linguraru, Jake Albrecht, Benedikt Wiestler, Florian Kofler, Anastasia Janas, Dominic LaBella, Anahita Fathi Kazerooni, Hongwei Bran Li, Juan Eugenio Iglesias, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Koen Van Leemput, Christina Bukas, Marie Piraud, Gian Marco Conte, Elaine Johanson, Zeke Meier, Bjoern H. Menze, Ujjwal Baid, Spyridon Bakas, Farouk Dako, Abiodun Fatade, Udunna Anazodo:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa). CoRR abs/2305.19369 (2023)
[i97]
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  - journals/corr/abs-2306-10941
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Linus Kreitner, Johannes C. Paetzold, Nikolaus Rauch, Chen Chen, Ahmed M. Hagag, Alaa E. Fayed, Sobha Sivaprasad, Sebastian Rausch, Julian Weichsel, Bjoern H. Menze, Matthias Harders, Benjamin Knier, Daniel Rueckert, Martin J. Menten:
Detailed retinal vessel segmentation without human annotations using simulated optical coherence tomography angiographs. CoRR abs/2306.10941 (2023)
[i96]
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  - journals/corr/abs-2306-16556
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Qingqiao Hu, Hao Wang, Jing Luo, Yunhao Luo, Zhiheng Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze, Jianguo Zhang, Hongwei Bran Li:
Inter-Rater Uncertainty Quantification in Medical Image Segmentation via Rater-Specific Bayesian Neural Networks. CoRR abs/2306.16556 (2023)
[i95]
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  - journals/corr/abs-2308-01318
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Diana Waldmannstetter, Benedikt Wiestler, Julian Schwarting, Ivan Ezhov, Marie Metz, Spyridon Bakas, Bhakti Baheti, Satrajit Chakrabarty, Jan S. Kirschke, Rolf A. Heckemann, Marie Piraud, Florian Kofler, Bjoern H. Menze:
Framing image registration as a landmark detection problem for better representation of clinical relevance. CoRR abs/2308.01318 (2023)
[i94]
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  - journals/corr/abs-2308-09345
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Robert Graf, Joachim Schmitt, Sarah Schlaeger, Hendrik Kristian Möller, Vasiliki Sideri-Lampretsa, Anjany Sekuboyina, Sandro Manuel Krieg, Benedikt Wiestler, Bjoern H. Menze, Daniel Rueckert, Jan Stefan Kirschke:
Denoising diffusion-based MR to CT image translation enables whole spine vertebral segmentation in 2D and 3D without manual annotations. CoRR abs/2308.09345 (2023)
[i93]
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  - journals/corr/abs-2308-16863
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Chinmay Prabhakar, Hongwei Bran Li, Johannes C. Paetzold, Timo Loehr, Chen Niu, Mark Mühlau, Daniel Rueckert, Benedikt Wiestler, Bjoern H. Menze:
Self-pruning Graph Neural Network for Predicting Inflammatory Disease Activity in Multiple Sclerosis from Brain MR Images. CoRR abs/2308.16863 (2023)
[i92]
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  - journals/corr/abs-2311-16536
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Ray Zirui Zhang, Ivan Ezhov, Michal Balcerak, Andy Zhu, Benedikt Wiestler, Bjoern H. Menze, John S. Lowengrub:
Personalized Predictions of Glioblastoma Infiltration: Mathematical Models, Physics-Informed Neural Networks and Multimodal Scans. CoRR abs/2311.16536 (2023)
[i91]
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  - journals/corr/abs-2312-02608
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Florian Kofler, Hendrik Kristian Möller, Josef A. Buchner, Ezequiel de la Rosa, Ivan Ezhov, Marcel Rosier, Isra Mekki, Suprosanna Shit, Moritz Negwer, Rami Al-Maskari, Ali Ertürk, Shankeeth Vinayahalingam, Fabian Isensee, Sarthak Pati, Daniel Rueckert, Jan S. Kirschke, Stefan K. Ehrlich, Annika Reinke, Bjoern H. Menze, Benedikt Wiestler, Marie Piraud:
Panoptica - instance-wise evaluation of 3D semantic and instance segmentation maps. CoRR abs/2312.02608 (2023)
[i90]
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Peng Tang, Xintong Yan, Yang Nan, Xiaobin Hu, Bjoern H. Menze, Sebastian Krammer, Tobias Lasser:
Joint-Individual Fusion Structure with Fusion Attention Module for Multi-Modal Skin Cancer Classification. CoRR abs/2312.04189 (2023)
[i89]
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  - journals/corr/abs-2312-05063
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Michal Balcerak, Ivan Ezhov, Petr Karnakov, Sergey Litvinov, Petros Koumoutsakos, Jonas Weidner, Ray Zirui Zhang, John S. Lowengrub, Benedikt Wiestler, Bjoern H. Menze:
Individualizing Glioma Radiotherapy Planning by Optimization of a Data and Physics Informed Discrete Loss. CoRR abs/2312.05063 (2023)
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George Biros, Andreas Mang, Björn H. Menze, Miriam Schulte:
Inverse Biophysical Modeling and Machine Learning in Personalized Oncology (Dagstuhl Seminar 23022). Dagstuhl Reports 13(1): 36-67 (2023)
2022
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Suprosanna Shit, Judith Zimmermann, Ivan Ezhov, Johannes C. Paetzold, Augusto Fava-Sanches, Carolin M. Pirkl, Bjoern H. Menze:
SRflow: Deep learning based super-resolution of 4D-flow MRI data. Frontiers Artif. Intell. 5 (2022)
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Matthias Ivantsits, Leonid Goubergrits, Jan-Martin Kuhnigk, Markus Hüllebrand, Jan Brüning, Tabea Kossen, Boris Pfahringer, Jens Schaller, Andreas Spuler, Titus Kühne, Yizhuan Jia, Xuesong Li, Suprosanna Shit, Bjoern H. Menze, Ziyu Su, Jun Ma, Ziwei Nie, Kartik Jain, Yanfei Liu, Yi Lin, Anja Hennemuth:
Detection and analysis of cerebral aneurysms based on X-ray rotational angiography - the CADA 2020 challenge. Medical Image Anal. 77: 102333 (2022)
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Carolin M. Pirkl, Matteo Cencini, Jan W. Kurzawski, Diana Waldmannstetter, Hongwei Li, Anjany Sekuboyina, Sebastian Endt, Luca Peretti, Graziella Donatelli, Rosa Pasquariello, Mauro Costagli, Guido Buonincontri, Michela Tosetti, Marion I. Menzel, Bjoern H. Menze:
Learning residual motion correction for fast and robust 3D multiparametric MRI. Medical Image Anal. 77: 102387 (2022)
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Xiaobin Hu, Wenqi Ren, Jiaolong Yang, Xiaochun Cao, David Wipf, Bjoern H. Menze, Xin Tong, Hongbin Zha:
Face Restoration via Plug-and-Play 3D Facial Priors. IEEE Trans. Pattern Anal. Mach. Intell. 44(12): 8910-8926 (2022)
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Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Chantal Pellegrini, Marcel Kollovieh, Fernando Navarro, Hongwei Li, Marie Metz, Benedikt Wiestler, Bjoern H. Menze:
Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models. IEEE Trans. Medical Imaging 41(5): 1269-1278 (2022)
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Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. BrainLes@MICCAI 2022: 3-13
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Bhakti Baheti, Sarthak Pati, Bjoern H. Menze, Spyridon Bakas:
Leveraging 2D Deep Learning ImageNet-trained Models for Native 3D Medical Image Analysis. BrainLes@MICCAI 2022: 68-79
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Suprosanna Shit, Rajat Koner, Bastian Wittmann, Johannes C. Paetzold, Ivan Ezhov, Hongwei Li, Jiazhen Pan, Sahand Sharifzadeh, Georgios Kaissis, Volker Tresp, Bjoern H. Menze:
Relationformer: A Unified Framework for Image-to-Graph Generation. ECCV (37) 2022: 422-439
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  - conf/embc/NavarroSSSEPCM22
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Fernando Navarro, Guido Sasahara, Suprosanna Shit, Anjany Sekuboyina, Ivan Ezhov, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze:
A Unified 3D Framework for Organs-at-Risk Localization and Segmentation for Radiation Therapy Planning. EMBC 2022: 1544-1547
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Fernando Navarro, Christopher Watanabe, Suprosanna Shit, Anjany Sekuboyina, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze:
Self-Supervised Pretext Tasks in Model Robustness & Generalizability: A Revisit from Medical Imaging Perspective. EMBC 2022: 5074-5079
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Chinmay Prabhakar, Anjany Sekuboyina, Hongwei Bran Li, Johannes C. Paetzold, Suprosanna Shit, Tamaz Amiranashvili, Jens Kleesiek, Bjoern H. Menze:
Structured Knowledge Graphs for Classifying Unseen Patterns in Radiographs. GeoMedIA 2022: 45-60
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Martin J. Menten, Johannes C. Paetzold, Alina Dima, Bjoern H. Menze, Benjamin Knier, Daniel Rueckert:
Physiology-Based Simulation of the Retinal Vasculature Enables Annotation-Free Segmentation of OCT Angiographs. MICCAI (8) 2022: 330-340
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Xiaobin Hu, Ruolin Shen, Donghao Luo, Ying Tai, Chengjie Wang, Bjoern H. Menze:
AutoGAN-Synthesizer: Neural Architecture Search for Cross-Modality MRI Synthesis. MICCAI (6) 2022: 397-409
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David Lüdke, Tamaz Amiranashvili, Felix Ambellan, Ivan Ezhov, Bjoern H. Menze, Stefan Zachow:
Landmark-Free Statistical Shape Modeling Via Neural Flow Deformations. MICCAI (2) 2022: 453-463
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Tamaz Amiranashvili, David Lüdke, Hongwei Bran Li, Bjoern H. Menze, Stefan Zachow:
Learning Shape Reconstruction from Sparse Measurements with Neural Implicit Functions. MIDL 2022: 22-34
[c114]
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Ivan Ezhov, Marcel Rosier, Lucas Zimmer, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Kevin Scibilia, Felix Steinbauer, Leon Mächler, Katharina Franitza, Tamaz Amiranashvili, Martin J. Menten, Marie Metz, Sailesh Conjeti, Benedikt Wiestler, Bjoern H. Menze:
A for-loop is all you need. For solving the inverse problem in the case of personalized tumor growth modeling. ML4H@NeurIPS 2022: 566-577
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Izabela Horvath, Johannes C. Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertürk, Bjoern H. Menze:
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy. WACV 2022: 3230-3240
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Ender Konukoglu, Bjoern H. Menze, Archana Venkataraman, Christian F. Baumgartner, Qi Dou, Shadi Albarqouni:
International Conference on Medical Imaging with Deep Learning, MIDL 2022, 6-8 July 2022, Zurich, Switzerland. Proceedings of Machine Learning Research 172, PMLR 2022 [contents]
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  - journals/corr/abs-2203-00624
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Fernando Navarro, Guido Sasahara, Suprosanna Shit, Ivan Ezhov, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze:
A unified 3D framework for Organs at Risk Localization and Segmentation for Radiation Therapy Planning. CoRR abs/2203.00624 (2022)
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  - journals/corr/abs-2203-10202
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Suprosanna Shit, Rajat Koner, Bastian Wittmann, Johannes C. Paetzold, Ivan Ezhov, Hongwei Li, Jiazhen Pan, Sahand Sharifzadeh, Georgios Kaissis, Volker Tresp, Bjoern H. Menze:
Relationformer: A Unified Framework for Image-to-Graph Generation. CoRR abs/2203.10202 (2022)
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  - journals/corr/abs-2203-16288
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Sandeep Kaushik, Mikael Bylund, Cristina Cozzini, Dattesh Shanbhag, Steven F. Petit, Jonathan J. Wyatt, Marion I. Menzel, Carolin M. Pirkl, Bhairav Mehta, Vikas Chauhan, Kesavadas Chandrasekharan, Joakim Jonsson, Tufve Nyholm, Florian Wiesinger, Bjoern H. Menze:
Region of Interest focused MRI to Synthetic CT Translation using Regression and Classification Multi-task Network. CoRR abs/2203.16288 (2022)
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  - journals/corr/abs-2204-02779
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Lucas Fidon, Michael Aertsen, Florian Kofler, Andrea Bink, Anna L. David, Thomas Deprest, Doaa Emam, Frédéric Guffens, András Jakab, Gregor Kasprian, Patric Kienast, Andrew Melbourne, Bjoern H. Menze, Nada Mufti, Ivana Pogledic, Daniela Prayer, Marlene Stuempflen, Esther Van Elslander, Sébastien Ourselin, Jan Deprest, Tom Vercauteren:
A Dempster-Shafer approach to trustworthy AI with application to fetal brain MRI segmentation. CoRR abs/2204.02779 (2022)
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  - journals/corr/abs-2204-09573
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Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben-Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor-Fadida, Leo Joskowicz, Weibin Liao, Lv Yi, Xuesong Li, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
Fetal Brain Tissue Annotation and Segmentation Challenge Results. CoRR abs/2204.09573 (2022)
[i82]
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  - journals/corr/abs-2205-04550
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Ivan Ezhov, Marcel Rosier, Lucas Zimmer, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Kevin Scibilia, Leon Mächler, Katharina Franitza, Tamaz Amiranashvili, Marie Metz, Sailesh Conjeti, Benedikt Wiestler, Bjoern H. Menze:
Casting the inverse problem as a database query. The case of personalized tumor growth modeling. CoRR abs/2205.04550 (2022)
[i81]
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  - journals/corr/abs-2205-08209
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Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
blob loss: instance imbalance aware loss functions for semantic segmentation. CoRR abs/2205.08209 (2022)
[i80]
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  - journals/corr/abs-2205-10355
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Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. CoRR abs/2205.10355 (2022)
[i79]
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  - journals/corr/abs-2206-01653
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Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger:
Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR abs/2206.01653 (2022)
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  - journals/corr/abs-2206-06694
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Moritz Roman Hernandez Petzsche, Ezequiel de la Rosa, Uta Hanning, Roland Wiest, Waldo Enrique Valenzuela Pinilla, Mauricio Reyes, Maria Inês Meyer, Sook-Lei Liew, Florian Kofler, Ivan Ezhov, David Robben, Alexandre Hutton, Tassilo Friedrich, Teresa Zarth, Johannes Bürkle, The Anh Baran, Bjoern H. Menze, Gabriel Broocks, Lukas Meyer, Claus Zimmer, Tobias Boeckh-Behrens, Maria Berndt, Benno Ikenberg, Benedikt Wiestler, Jan S. Kirschke:
ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset. CoRR abs/2206.06694 (2022)
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Bastian Wittmann, Fernando Navarro, Suprosanna Shit, Bjoern H. Menze:
Focused Decoding Enables 3D Anatomical Detection by Transformers. CoRR abs/2207.10774 (2022)
[i76]
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  - journals/corr/abs-2207-11102
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Martin J. Menten, Johannes C. Paetzold, Alina Dima, Bjoern H. Menze, Benjamin Knier, Daniel Rueckert:
Physiology-based simulation of the retinal vasculature enables annotation-free segmentation of OCT angiographs. CoRR abs/2207.11102 (2022)
[i75]
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  - journals/corr/abs-2208-07167
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Carole H. Sudre, Kimberlin M. H. van Wijnen, Florian Dubost, Hieab Adams, David Atkinson, Frederik Barkhof, Mahlet A. Birhanu, Esther E. Bron, Robin Camarasa, Nish Chaturvedi, Yuan Chen, Zihao Chen, Shuai Chen, Qi Dou, Tavia E. Evans, Ivan Ezhov, Haojun Gao, Marta Gironés-Sangüesa, Juan Domingo Gispert, Beatriz Gomez Anson, Alun D. Hughes, Mohammad Arfan Ikram, Silvia Ingala, Hans Rolf Jäger, Florian Kofler, Hugo J. Kuijf, Denis Kutnar, Minho Lee, Bo Li, Luigi Lorenzini, Bjoern H. Menze, José Luis Molinuevo, Yiwei Pan, Élodie Puybareau, Rafael Rehwald, Ruisheng Su, Pengcheng Shi, Lorna Smith, Therese Tillin, Guillaume Tochon, Hélène Urien, Bas H. M. van der Velden, Isabelle F. van der Velpen, Benedikt Wiestler, Frank J. Wolters, Pinar Yilmaz, Marius de Groot, Meike W. Vernooij, Marleen de Bruijne:
Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021. CoRR abs/2208.07167 (2022)
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  - journals/corr/abs-2209-06861
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David Lüdke, Tamaz Amiranashvili, Felix Ambellan, Ivan Ezhov, Bjoern H. Menze, Stefan Zachow:
Landmark-free Statistical Shape Modeling via Neural Flow Deformations. CoRR abs/2209.06861 (2022)
[i73]
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  - journals/corr/abs-2211-15272
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Nico Stucki, Johannes C. Paetzold, Suprosanna Shit, Bjoern H. Menze, Ulrich Bauer:
Topologically faithful image segmentation via induced matching of persistence barcodes. CoRR abs/2211.15272 (2022)
[i72]
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  - journals/corr/abs-2212-01577
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Hongwei Bran Li, Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Tamaz Amiranashvili, Jianguo Zhang, Daniel Rueckert, Juan Eugenio Iglesias, Benedikt Wiestler, Bjoern H. Menze:
A Domain-specific Perceptual Metric via Contrastive Self-supervised Representation: Applications on Natural and Medical Images. CoRR abs/2212.01577 (2022)
2021
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Bjoern H. Menze, Fabian Isensee, Roland Wiest, Benedikt Wiestler, Klaus H. Maier-Hein, Mauricio Reyes, Spyridon Bakas:
Analyzing magnetic resonance imaging data from glioma patients using deep learning. Comput. Medical Imaging Graph. 88: 101828 (2021)
[j31]
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Mohammad Golbabaee, Guido Buonincontri, Carolin M. Pirkl, Marion I. Menzel, Bjoern H. Menze, Mike E. Davies, Pedro A. Gómez:
Compressive MRI quantification using convex spatiotemporal priors and deep encoder-decoder networks. Medical Image Anal. 69: 101945 (2021)
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Anjany Sekuboyina, Malek El Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukacka, Christian Payer, Darko Stern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubícek, Jirí Chmelík, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke:
VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images. Medical Image Anal. 73: 102166 (2021)
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Ezequiel de la Rosa, Diana Maria Sima, Bjoern H. Menze, Jan S. Kirschke, David Robben:
AIFNet: Automatic vascular function estimation for perfusion analysis using deep learning. Medical Image Anal. 74: 102211 (2021)
[j28]
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  - journals/neuroimage/TimminsSBRABBFN21
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Kimberley M. Timmins, Irene C. van der Schaaf, Edwin Bennink, Ynte M. Ruigrok, Xingle An, Michael Baumgartner, Pascal Bourdon, Riccardo de Feo, Tommaso Di Noto, Florian Dubost, Augusto Fava-Sanches, Xue Feng, Corentin Giroud, Inteneural Group, Minghui Hu, Paul F. Jaeger, Juhana Kaiponen, Michal Klimont, Yuexiang Li, Hongwei Li, Yi Lin, Timo Loehr, Jun Ma, Klaus H. Maier-Hein, Guillaume Marie, Bjoern H. Menze, Jonas Richiardi, Saifeddine Rjiba, Dhaval Shah, Suprosanna Shit, Jussi Tohka, Thierry Urruty, Urszula Walinska, Xiaoping Yang, Yunqiao Yang, Yin Yin, Birgitta K. Velthuis, Hugo J. Kuijf:
Comparing methods of detecting and segmenting unruptured intracranial aneurysms on TOF-MRAS: The ADAM challenge. NeuroImage 238: 118216 (2021)
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Jianning Li, Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Jovani Estacio Cerquin, Christian Doenitz, Heiko Ramm, Haochen Shi, Xiaojun Chen, Franco Matzkin, Virginia F. J. Newcombe, Enzo Ferrante, Yuan Jin, David G. Ellis, Michele R. Aizenberg, Oldrich Kodym, Michal Spanel, Adam Herout, James G. Mainprize, Zachary Fishman, Michael R. Hardisty, Amirhossein Bayat, Suprosanna Shit, Bomin Wang, Zhi Liu, Matthias Eder, Antonio Pepe, Christina Gsaxner, Victor Alves, Ulrike Zefferer, Gord von Campe, Karin Pistracher, Ute Schäfer, Dieter Schmalstieg, Bjoern H. Menze, Ben Glocker, Jan Egger:
AutoImplant 2020-First MICCAI Challenge on Automatic Cranial Implant Design. IEEE Trans. Medical Imaging 40(9): 2329-2342 (2021)
[j26]
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Víctor M. Campello, Polyxeni Gkontra, Cristian Izquierdo, Carlos Martín-Isla, Alireza Sojoudi, Peter M. Full, Klaus H. Maier-Hein, Yao Zhang, Zhiqiang He, Jun Ma, Mario Parreño, Alberto Albiol, Fanwei Kong, Shawn C. Shadden, Jorge Corral Acero, Vaanathi Sundaresan, Mina Saber, Mustafa A. Alattar, Hongwei Li, Bjoern H. Menze, Firas Khader, Christoph Haarburger, Cian M. Scannell, Mitko Veta, Adam Carscadden, Kumaradevan Punithakumar, Xiao Liu, Sotirios A. Tsaftaris, Xiaoqiong Huang, Xin Yang, Lei Li, Xiahai Zhuang, David Viladés, Martín Luís Descalzo, Andrea Guala, Lucia La Mura, Matthias G. W. Friedrich, Ria Garg, Julie Lebel, Filipe Henriques, Mahir Karakas, Ersin Çavus, Steffen E. Petersen, Sergio Escalera, Santi Seguí, José F. Rodríguez Palomares, Karim Lekadir:
Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge. IEEE Trans. Medical Imaging 40(12): 3543-3554 (2021)
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  - conf/brainles-ws/MachlerEKSPLZWM21
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Leon Mächler, Ivan Ezhov, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Timo Loehr, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
FedCostWAvg: A New Averaging for Better Federated Learning. BrainLes@MICCAI (2) 2021: 383-391
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Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Ivan Ezhov, Alexander Unger, Andrey Zhylka, Josien P. W. Pluim, Ulrich Bauer, Bjoern H. Menze:
clDice - A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation. CVPR 2021: 16560-16569
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Xiaobin Hu, Wenqi Ren, Kaicheng Yu, Kaihao Zhang, Xiaochun Cao, Wei Liu, Bjoern H. Menze:
Pyramid Architecture Search for Real-Time Image Deblurring. ICCV 2021: 4278-4287
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Suprosanna Shit, Dhritiman Das, Ivan Ezhov, Johannes C. Paetzold, Augusto Fava-Sanches, Nils Thuerey, Bjoern H. Menze:
Velocity-To-Pressure (V2P) - Net: Inferring Relative Pressures from Time-Varying 3D Fluid Flow Velocities. IPMI 2021: 545-558
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Hongwei Li, Rameshwara G. N. Prasad, Anjany Sekuboyina, Chen Niu, Siwei Bai, Werner Hemmert, Bjoern H. Menze:
Micro-Ct Synthesis and Inner Ear Super Resolution via Generative Adversarial Networks and Bayesian Inference. ISBI 2021: 1500-1504
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Hongwei Li, Fei-Fei Xue, Krishna Chaitanya, Shengda Luo, Ivan Ezhov, Benedikt Wiestler, Jianguo Zhang, Bjoern H. Menze:
Imbalance-Aware Self-supervised Learning for 3D Radiomic Representations. MICCAI (2) 2021: 36-46
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Hongwei Li, Sunita Gopal, Anjany Sekuboyina, Jianguo Zhang, Chen Niu, Carolin M. Pirkl, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze:
Unpaired MR Image Homogenisation by Disentangled Representations and Its Uncertainty. UNSURE/PIPPI@MICCAI 2021: 44-53
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Xiaobin Hu, Yanyang Yan, Wenqi Ren, Hongwei Li, Amirhossein Bayat, Yu Zhao, Bjoern H. Menze:
Feedback Graph Attention Convolutional Network for MR Images Enhancement by Exploring Self-Similarity Features. MIDL 2021: 327-337
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Carolin M. Pirkl, Matteo Cencini, Jan W. Kurzawski, Diana Waldmannstetter, Hongwei Li, Anjany Sekuboyina, Sebastian Endt, Luca Peretti, Graziella Donatelli, Rosa Pasquariello, Michela Tosetti, Mauro Costagli, Guido Buonincontri, Marion I. Menzel, Bjoern H. Menze:
Residual learning for 3D motion corrected quantitative MRI: Robust clinical T1, T2 and proton density mapping. MIDL 2021: 618-632
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Johannes C. Paetzold, Julian McGinnis, Suprosanna Shit, Ivan Ezhov, Paul Büschl, Chinmay Prabhakar, Anjany Sekuboyina, Mihail I. Todorov, Georgios Kaissis, Ali Ertürk, Stephan Günnemann, Bjoern H. Menze:
Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience. NeurIPS Datasets and Benchmarks 2021
[i71]
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  - journals/corr/abs-2103-01006
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Sarthak Pati, Siddhesh P. Thakur, Megh Bhalerao, Ujjwal Baid, Caleb M. Grenko, Brandon Edwards, Micah J. Sheller, Jose Agraz, Bhakti Baheti, Vishnu Bashyam, Parth Sharma, Babak Haghighi, Aimilia Gastounioti, Mark Bergman, Bjoern H. Menze, Despina Kontos, Christos Davatzikos, Spyridon Bakas:
GaNDLF: A Generally Nuanced Deep Learning Framework for Scalable End-to-End Clinical Workflows in Medical Imaging. CoRR abs/2103.01006 (2021)
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Hongwei Li, Fei-Fei Xue, Krishna Chaitanya, Shengda Liu, Ivan Ezhov, Benedikt Wiestler, Jianguo Zhang, Bjoern H. Menze:
Imbalance-Aware Self-Supervised Learning for 3D Radiomic Representations. CoRR abs/2103.04167 (2021)
[i69]
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Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes C. Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna P. Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze:
Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient. CoRR abs/2103.06205 (2021)
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  - journals/corr/abs-2103-06360
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Hans Liebl, David Schinz, Anjany Sekuboyina, Luca Malagutti, Maximilian T. Löffler, Amirhossein Bayat, Malek El Husseini, Giles Tetteh, Katharina Grau, Eva Niederreiter, Thomas Baum, Benedikt Wiestler, Bjoern H. Menze, Rickmer Braren, Claus Zimmer, Jan S. Kirschke:
A Computed Tomography Vertebral Segmentation Dataset with Anatomical Variations and Multi-Vendor Scanner Data. CoRR abs/2103.06360 (2021)
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  - journals/corr/abs-2103-17111
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Ezequiel de la Rosa, David Robben, Diana Maria Sima, Jan S. Kirschke, Bjoern H. Menze:
Differentiable Deconvolution for Improved Stroke Perfusion Analysis. CoRR abs/2103.17111 (2021)
[i66]
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  - journals/corr/abs-2104-05642
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Annika Reinke, Matthias Eisenmann, Minu Dietlinde Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin M. Kurç, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein:
Common Limitations of Image Processing Metrics: A Picture Story. CoRR abs/2104.05642 (2021)
[i65]
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  - journals/corr/abs-2104-10993
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Izabela Horvath, Johannes C. Paetzold, Oliver Schoppe, Rami Al-Maskari, Ivan Ezhov, Suprosanna Shit, Hongwei Li, Ali Ertuerk, Bjoern H. Menze:
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy. CoRR abs/2104.10993 (2021)
[i64]
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  - journals/corr/abs-2105-05874
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Sarthak Pati, Ujjwal Baid, Maximilian Zenk, Brandon Edwards, Micah J. Sheller, G. Anthony Reina, Patrick Foley, Alexey Gruzdev, Jason Martin, Shadi Albarqouni, Yong Chen, Russell Taki Shinohara, Annika Reinke, David Zimmerer, John B. Freymann, Justin S. Kirby, Christos Davatzikos, Rivka R. Colen, Aikaterini Kotrotsou, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Hassan M. Fathallah-Shaykh, Roland Wiest, András Jakab, Marc-André Weber, Abhishek Mahajan, Lena Maier-Hein, Jens Kleesiek, Bjoern H. Menze, Klaus H. Maier-Hein, Spyridon Bakas:
The Federated Tumor Segmentation (FeTS) Challenge. CoRR abs/2105.05874 (2021)
[i63]
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Fernando Navarro, Christopher Watanabe, Suprosanna Shit, Anjany Sekuboyina, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze:
Evaluating the Robustness of Self-Supervised Learning in Medical Imaging. CoRR abs/2105.06986 (2021)
[i62]
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  - journals/corr/abs-2106-05735
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Michela Antonelli, Annika Reinke, Spyridon Bakas, Keyvan Farahani, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Bram van Ginneken, Michel Bilello, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Stephan Heckers, Henkjan J. Huisman, William R. Jarnagin, Maureen McHugo, Sandy Napel, Jennifer Goli-Pernicka, Kawal S. Rhode, Catalina Tobon-Gomez, Eugene Vorontsov, James A. Meakin, Sébastien Ourselin, Manuel Wiesenfarth, Pablo Arbeláez, Byeonguk Bae, Sihong Chen, Laura Alexandra Daza, Jianjiang Feng, Baochun He, Fabian Isensee, Yuanfeng Ji, Fucang Jia, Namkug Kim, Ildoo Kim, Dorit Merhof, Akshay Pai, BeomHee Park, Mathias Perslev, Ramin Rezaiifar, Oliver Rippel, Ignacio Sarasua, Wei Shen, Jaemin Son, Christian Wachinger, Liansheng Wang, Yan Wang, Yingda Xia, Daguang Xu, Zhanwei Xu, Yefeng Zheng, Amber L. Simpson, Lena Maier-Hein, M. Jorge Cardoso:
The Medical Segmentation Decathlon. CoRR abs/2106.05735 (2021)
[i61]
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  - journals/corr/abs-2107-02314
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Ujjwal Baid, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Evan Calabrese, Errol Colak, Keyvan Farahani, Jayashree Kalpathy-Cramer, Felipe C. Kitamura, Sarthak Pati, Luciano M. Prevedello, Jeffrey D. Rudie, Chiharu Sako, Russell T. Shinohara, Timothy Bergquist, Rong Chai, James A. Eddy, Julia Elliott, Walter Reade, Thomas Schaffter, Thomas Yu, Jiaxin Zheng, BraTS Annotators, Christos Davatzikos, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, John B. Freymann, Justin S. Kirby, Benedikt Wiestler, Priscila Crivellaro, Rivka R. Colen, Aikaterini Kotrotsou, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Hassan M. Fathallah-Shaykh, Roland Wiest, András Jakab, Marc-André Weber, Abhishek Mahajan, Bjoern H. Menze, Adam E. Flanders, Spyridon Bakas:
The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification. CoRR abs/2107.02314 (2021)
[i60]
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  - journals/corr/abs-2108-13233
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Johannes C. Paetzold, Julian McGinnis, Suprosanna Shit, Ivan Ezhov, Paul Büschl, Chinmay Prabhakar, Mihail I. Todorov, Anjany Sekuboyina, Georgios Kaissis, Ali Ertürk, Stephan Günnemann, Bjoern H. Menze:
Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience (VesselGraph). CoRR abs/2108.13233 (2021)
[i59]
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  - journals/corr/abs-2109-01467
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Suprosanna Shit, Ivan Ezhov, Leon Mächler, Abinav R., Jana Lipková, Johannes C. Paetzold, Florian Kofler, Marie Piraud, Bjoern H. Menze:
Semi-Implicit Neural Solver for Time-dependent Partial Differential Equations. CoRR abs/2109.01467 (2021)
[i58]
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  - journals/corr/abs-2110-12508
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Giles Tetteh, Fernando Navarro, Johannes C. Paetzold, Jan Kirschke, Claus Zimmer, Bjoern H. Menze:
A Deep Learning Approach to Predicting Collateral Flow in Stroke Patients Using Radiomic Features from Perfusion Images. CoRR abs/2110.12508 (2021)
[i57]
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  - journals/corr/abs-2111-04090
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Ivan Ezhov, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin J. Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze:
Learn-Morph-Infer: a new way of solving the inverse problem for brain tumor modeling. CoRR abs/2111.04090 (2021)
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  - journals/corr/abs-2111-08649
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Leon Mächler, Ivan Ezhov, Florian Kofler, Suprosanna Shit, Johannes C. Paetzold, Timo Loehr, Benedikt Wiestler, Bjoern H. Menze:
FedCostWAvg: A new averaging for better Federated Learning. CoRR abs/2111.08649 (2021)
[i55]
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  - journals/corr/abs-2112-06979
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Bhakti Baheti, Diana Waldmannstetter, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey D. Rudie, Syed Amaan Abidi, Mina Mousa, Javier E. Villanueva-Meyer, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Bjoern H. Menze, Spyridon Bakas:
The Brain Tumor Sequence Registration Challenge: Establishing Correspondence between Pre-Operative and Follow-up MRI scans of diffuse glioma patients. CoRR abs/2112.06979 (2021)
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Raghav Mehta, Angelos Filos, Ujjwal Baid, Chiharu Sako, Richard McKinley, Michael Rebsamen, Katrin Dätwyler, Raphael Meier, Piotr Radojewski, Gowtham Krishnan Murugesan, Sahil S. Nalawade, Chandan Ganesh, Benjamin C. Wagner, Fang F. Yu, Baowei Fei, Ananth J. Madhuranthakam, Joseph A. Maldjian, Laura Alexandra Daza, Catalina Gómez Caballero, Pablo Arbeláez, Chengliang Dai, Shuo Wang, Hadrien Raynaud, Yuanhan Mo, Elsa D. Angelini, Yike Guo, Wenjia Bai, Subhashis Banerjee, Linmin Pei, Murat Ak, Sarahi Rosas-González, Ilyess Zemmoura, Clovis Tauber, Minh H. Vu, Tufve Nyholm, Tommy Löfstedt, Laura Mora Ballestar, Verónica Vilaplana, Hugh McHugh, Gonzalo D. Maso Talou, Alan Wang, Jay B. Patel, Ken Chang, Katharina Hoebel, Mishka Gidwani, Nishanth Thumbavanam Arun, Sharut Gupta, Mehak Aggarwal, Praveer Singh, Elizabeth R. Gerstner, Jayashree Kalpathy-Cramer, Nicolas Boutry, Alexis Huard, Lasitha Vidyaratne, Md Monibor Rahman, Khan M. Iftekharuddin, Joseph Chazalon, Élodie Puybareau, Guillaume Tochon, Jun Ma, Mariano Cabezas, Xavier Lladó, Arnau Oliver, Liliana Valencia, Sergi Valverde, Mehdi Amian, Mohammadreza Soltaninejad, Andriy Myronenko, Ali Hatamizadeh, Xue Feng, Quan Dou, Nicholas J. Tustison, Craig H. Meyer, Nisarg A. Shah, Sanjay N. Talbar, Marc-André Weber, Abhishek Mahajan, András Jakab, Roland Wiest, Hassan M. Fathallah-Shaykh, Arash Nazeri, Mikhail Milchenko, Daniel S. Marcus, Aikaterini Kotrotsou, Rivka Colen, John B. Freymann, Justin S. Kirby, Christos Davatzikos, Bjoern H. Menze, Spyridon Bakas, Yarin Gal, Tal Arbel:
QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking Results. CoRR abs/2112.10074 (2021)
2020
[j25]
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  - journals/titb/HuGCLWZLSM20
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Xiaobin Hu, Rui Guo, Jieneng Chen, Hongwei Li, Diana Waldmannstetter, Yu Zhao, Biao Li, Kuangyu Shi, Bjoern H. Menze:
Coarse-to-Fine Adversarial Networks and Zone-Based Uncertainty Analysis for NK/T-Cell Lymphoma Segmentation in CT/PET Images. IEEE J. Biomed. Health Informatics 24(9): 2599-2608 (2020)
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  - conf/cvpr/ZhaoYFLZZSYMFY20
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Yu Zhao, Fan Yang, Yuqi Fang, Hailing Liu, Niyun Zhou, Jun Zhang, Jiarui Sun, Sen Yang, Bjoern H. Menze, Xinjuan Fan, Jianhua Yao:
Predicting Lymph Node Metastasis Using Histopathological Images Based on Multiple Instance Learning With Deep Graph Convolution. CVPR 2020: 4836-4845
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Xiaobin Hu, Wenqi Ren, John LaMaster, Xiaochun Cao, Xiaoming Li, Zechao Li, Bjoern H. Menze, Wei Liu:
Face Super-Resolution Guided by 3D Facial Priors. ECCV (4) 2020: 763-780
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  - conf/icpr/MaLLWMZ20
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Jiechao Ma, Xiang Li, Hongwei Li, Ruixuan Wang, Bjoern H. Menze, Wei-Shi Zheng:
Cross-View Relation Networks for Mammogram Mass Detection. ICPR 2020: 8632-8638
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Hanwool Park, Amirhossein Bayat, Mohammad Sabokrou, Jan S. Kirschke, Bjoern H. Menze:
Robustification of Segmentation Models Against Adversarial Perturbations in Medical Imaging. PRIME@MICCAI 2020: 46-57
[c98]
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Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Bjoern H. Menze:
Aν-Net: Automatic Detection and Segmentation of Aneurysm. CADA@MICCAI 2020: 51-57
[c97]
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Maximilian Möller, Matthias Kohl, Stefan Braunewell, Florian Kofler, Benedikt Wiestler, Jan S. Kirschke, Björn H. Menze, Marie Piraud:
Reliable Saliency Maps for Weakly-Supervised Localization of Disease Patterns. iMIMIC/MIL3ID/LABELS@MICCAI 2020: 63-72
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Amirhossein Bayat, Suprosanna Shit, Adrian Kilian, Jürgen T. Liechtenstein, Jan S. Kirschke, Bjoern H. Menze:
Cranial Implant Prediction Using Low-Resolution 3D Shape Completion and High-Resolution 2D Refinement. AutoImplant@MICCAI 2020: 77-84
[c95]
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Maximilian Hornung, Oliver Taubmann, Hendrik Ditt, Björn H. Menze, Pawel Andrzej Herman, Erik Fransén:
Detection of Ischemic Infarct Core in Non-contrast Computed Tomography. MLMI@MICCAI 2020: 260-269
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Hongwei Li, Jianguo Zhang, Bjoern H. Menze:
Generalisable Cardiac Structure Segmentation via Attentional and Stacked Image Adaptation. M&Ms and EMIDEC/STACOM@MICCAI 2020: 297-304
[c93]
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Stefan Gerl, Johannes C. Paetzold, Hailong He, Ivan Ezhov, Suprosanna Shit, Florian Kofler, Amirhossein Bayat, Giles Tetteh, Vasilis Ntziachristos, Bjoern H. Menze:
A Distance-Based Loss for Smooth and Continuous Skin Layer Segmentation in Optoacoustic Images. MICCAI (6) 2020: 309-319
[c92]
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Ezequiel de la Rosa, David Robben, Diana Maria Sima, Jan S. Kirschke, Bjoern H. Menze:
Differentiable Deconvolution for Improved Stroke Perfusion Analysis. MICCAI (7) 2020: 593-602
[c91]
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Malek El Husseini, Anjany Sekuboyina, Maximilian Löffler, Fernando Navarro, Bjoern H. Menze, Jan S. Kirschke:
Grading Loss: A Fracture Grade-Based Metric Loss for Vertebral Fracture Detection. MICCAI (6) 2020: 733-742
[c90]
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Amirhossein Bayat, Anjany Sekuboyina, Johannes C. Paetzold, Christian Payer, Darko Stern, Martin Urschler, Jan S. Kirschke, Bjoern H. Menze:
Inferring the 3D Standing Spine Posture from 2D Radiographs. MICCAI (6) 2020: 775-784
[c89]
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  - conf/midl/NavarroSWPCM20
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Fernando Navarro, Anjany Sekuboyina, Diana Waldmannstetter, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze:
Deep Reinforcement Learning for Organ Localization in CT. MIDL 2020: 544-554
[c88]
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Carolin M. Pirkl, Pedro A. Gómez, Ilona Lipp, Guido Buonincontri, Miguel Molina-Romero, Anjany Sekuboyina, Diana Waldmannstetter, Jonathan Dannenberg, Sebastian Endt, Alberto Merola, Joseph R. Whittaker, Valentina Tomassini, Michela Tosetti, Derek K. Jones, Bjoern H. Menze, Marion I. Menzel:
Deep learning-based parameter mapping for joint relaxation and diffusion tensor MR Fingerprinting. MIDL 2020: 638-654
[c87]
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Ahmad Bin Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze:
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective. MIDL 2020: 655-668
[c86]
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Diana Waldmannstetter, Fernando Navarro, Benedikt Wiestler, Jan S. Kirschke, Anjany Sekuboyina, Ester Molero, Bjoern H. Menze:
Reinforced Redetection of Landmark in Pre- and Post-operative Brain Scan Using Anatomical Guidance for Image Alignment. WBIR 2020: 81-90
[i53]
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  - journals/corr/abs-2001-08746
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Mohammad Golbabaee, Guido Bounincontri, Carolin M. Pirkl, Marion I. Menzel, Bjoern H. Menze, Mike E. Davies, Pedro A. Gómez:
Compressive MRI quantification using convex spatiotemporal priors and deep auto-encoders. CoRR abs/2001.08746 (2020)
[i52]
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  - journals/corr/abs-2001-09193
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Anjany Sekuboyina, Malek El Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukacka, Christian Payer, Darko Stern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Xiangshang Zheng, Liming Xu, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubícek, Jirí Chmelík, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke:
VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images. CoRR abs/2001.09193 (2020)
[i51]
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  - journals/corr/abs-2001-09313
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Hongwei Li, Timo Loehr, Benedikt Wiestler, Jianguo Zhang, Bjoern H. Menze:
e-UDA: Efficient Unsupervised Domain Adaptation for Cross-Site Medical Image Segmentation. CoRR abs/2001.09313 (2020)
[i50]
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  - journals/corr/abs-2003-07311
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Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Andrey Zhylka, Ivan Ezhov, Alexander Unger, Josien P. W. Pluim, Giles Tetteh, Bjoern H. Menze:
clDice - a Topology-Preserving Loss Function for Tubular Structure Segmentation. CoRR abs/2003.07311 (2020)
[i49]
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  - journals/corr/abs-2004-10734
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Ahmad Bin Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze:
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective. CoRR abs/2004.10734 (2020)
[i48]
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  - journals/corr/abs-2005-04974
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Fernando Navarro, Anjany Sekuboyina, Diana Waldmannstetter, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze:
Deep Reinforcement Learning for Organ Localization in CT. CoRR abs/2005.04974 (2020)
[i47]
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  - journals/corr/abs-2007-05324
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Stefan Gerl, Johannes C. Paetzold, Hailong He, Ivan Ezhov, Suprosanna Shit, Florian Kofler, Amirhossein Bayat, Giles Tetteh, Vasilis Ntziachristos, Bjoern H. Menze:
A distance-based loss for smooth and continuous skin layer segmentation in optoacoustic images. CoRR abs/2007.05324 (2020)
[i46]
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  - journals/corr/abs-2007-06612
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Amirhossein Bayat, Anjany Sekuboyina, Johannes C. Paetzold, Christian Payer, Darko Stern, Martin Urschler, Jan S. Kirschke, Bjoern H. Menze:
Inferring the 3D Standing Spine Posture from 2D Radiographs. CoRR abs/2007.06612 (2020)
[i45]
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  - journals/corr/abs-2007-09454
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Xiaobin Hu, Wenqi Ren, John LaMaster, Xiaochun Cao, Xiaoming Li, Zechao Li, Bjoern H. Menze, Wei Liu:
Face Super-Resolution Guided by 3D Facial Priors. CoRR abs/2007.09454 (2020)
[i44]
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  - journals/corr/abs-2008-01216
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Hongwei Li, Jianguo Zhang, Bjoern H. Menze:
Generalisable Cardiac Structure Segmentation via Attentional and Stacked Image Adaptation. CoRR abs/2008.01216 (2020)
[i43]
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  - journals/corr/abs-2008-03465
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Hongwei Li, Aurore Menegaux, Felix J. B. Bäuerlein, Suprosanna Shit, Benita Schmitz-Koep, Christian Sorg, Bjoern H. Menze, Dennis M. Hedderich:
Complex Grey Matter Structure Segmentation in Brains via Deep Learning: Example of the Claustrum. CoRR abs/2008.03465 (2020)
[i42]
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  - journals/corr/abs-2008-07831
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Malek El Husseini, Anjany Sekuboyina, Maximilian Löffler, Fernando Navarro, Bjoern H. Menze, Jan S. Kirschke:
Grading Loss: A Fracture Grade-based Metric Loss for Vertebral Fracture Detection. CoRR abs/2008.07831 (2020)
[i41]
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  - journals/corr/abs-2009-04240
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Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Fernando Navarro, Marie Metz, Benedikt Wiestler, Björn H. Menze:
Real-time Bayesian personalization via a learnable brain tumor growth model. CoRR abs/2009.04240 (2020)
[i40]
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  - journals/corr/abs-2009-10769
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Amirhossein Bayat, Suprosanna Shit, Adrian Kilian, Jürgen T. Liechtenstein, Jan S. Kirschke, Bjoern H. Menze:
Cranial Implant Prediction using Low-Resolution 3D Shape Completion and High-Resolution 2D Refinement. CoRR abs/2009.10769 (2020)
[i39]
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  - journals/corr/abs-2009-11090
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Hanwool Park, Amirhossein Bayat, Mohammad Sabokrou, Jan S. Kirschke, Bjoern H. Menze:
Robustification of Segmentation Models Against Adversarial Perturbations In Medical Imaging. CoRR abs/2009.11090 (2020)
[i38]
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  - journals/corr/abs-2010-01617
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Ezequiel de la Rosa, Diana Maria Sima, Bjoern H. Menze, Jan S. Kirschke, David Robben:
AIFNet: Automatic Vascular Function Estimation for Perfusion Analysis Using Deep Learning. CoRR abs/2010.01617 (2020)
[i37]
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  - journals/corr/abs-2010-14105
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Hongwei Li, Rameshwara G. N. Prasad, Anjany Sekuboyina, Chen Niu, Siwei Bai, Werner Hemmert, Björn H. Menze:
Micro-CT Synthesis and Inner Ear Super Resolution via Bayesian Generative Adversarial Networks. CoRR abs/2010.14105 (2020)
[i36]
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  - journals/corr/abs-2010-15526
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Kelly Payette, Priscille de Dumast, Hamza Kebiri, Ivan Ezhov, Johannes C. Paetzold, Suprosanna Shit, Asim Iqbal, Romesa Khan, Raimund Kottke, Patrice Grehten, Hui Ji, Levente Lanczi, Marianna Nagy, Monika Beresova, Thi Dao Nguyen, Giancarlo Natalucci, Theofanis Karayannis, Bjoern H. Menze, Meritxell Bach Cuadra, András Jakab:
A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset. CoRR abs/2010.15526 (2020)

2010 – 2019

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2019
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Marie Piraud, Markus Wennmann, Laurent Kintzelé, Jens Hillengass, Ulrich Keller, Georg Langs, Marc-André Weber, Björn H. Menze:
Towards quantitative imaging biomarkers of tumor dissemination: A multi-scale parametric modeling of multiple myeloma. Medical Image Anal. 57: 214-225 (2019)
[j23]
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Yu Zhao, Hongwei Li, Shaohua Wan, Anjany Sekuboyina, Xiaobin Hu, Giles Tetteh, Marie Piraud, Bjoern H. Menze:
Knowledge-Aided Convolutional Neural Network for Small Organ Segmentation. IEEE J. Biomed. Health Informatics 23(4): 1363-1373 (2019)
[j22]
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Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze:
Personalized Radiotherapy Design for Glioblastoma: Integrating Mathematical Tumor Models, Multimodal Scans, and Bayesian Inference. IEEE Trans. Medical Imaging 38(8): 1875-1884 (2019)
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Florian Kofler, Johannes C. Paetzold, Ivan Ezhov, Suprosanna Shit, Daniel Krahulec, Jan S. Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
A Baseline for Predicting Glioblastoma Patient Survival Time with Classical Statistical Models and Primitive Features Ignoring Image Information. BrainLes@MICCAI (1) 2019: 254-261
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Yu Zhao, Andrei Gafita, Giles Tetteh, Fabian Haupt, Ali Afshar-Oromieh, Bjoern H. Menze, Matthias Eiber, Axel Rominger, Kuangyu Shi:
Deep Neural Network for Automatic Characterization of Lesions on 68Ga-PSMA PET/CT Images. EMBC 2019: 951-954
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Hongwei Li, Maximilian Reichert, Kanru Lin, Nikita Tselousov, Rickmer Braren, Deliang Fu, Roland Schmid, Ji Li, Bjoern H. Menze, Kuangyu Shi:
Differential Diagnosis for Pancreatic Cysts in CT Scans Using Densely-Connected Convolutional Networks. EMBC 2019: 2095-2098
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Ezequiel de la Rosa, Diana Maria Sima, Thijs Vande Vyvere, Jan S. Kirschke, Björn H. Menze:
A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans. ISBI 2019: 732-735
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Yu Zhao, Yuan Liu, Yansheng Kan, Anjany Sekuboyina, Diana Waldmannstetter, Hongwei Li, Xiaobin Hu, Xiaozhi Zhao, Kuangyu Shi, Bjoern H. Menze:
Spatial-Frequency Non-local Convolutional LSTM Network for pRCC Classification. MICCAI (6) 2019: 22-30
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Malek El Husseini, Anjany Sekuboyina, Amirhossein Bayat, Bjoern H. Menze, Maximilian Löffler, Jan S. Kirschke:
Conditioned Variational Auto-encoder for Detecting Osteoporotic Vertebral Fractures. CSI@MICCAI 2019: 29-38
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Amirhossein Bayat, Anjany Sekuboyina, Felix Hofmann, Malek El Husseini, Jan S. Kirschke, Bjoern H. Menze:
Vertebral Labelling in Radiographs: Learning a Coordinate Corrector to Enforce Spinal Shape. CSI@MICCAI 2019: 39-46
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Jingkun Chen, Hongwei Li, Jianguo Zhang, Bjoern H. Menze:
Adversarial Convolutional Networks with Weak Domain-Transfer for Multi-sequence Cardiac MR Images Segmentation. STACOM@MICCAI 2019: 317-325
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Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch, Maximilian Löffler, Jan S. Kirschke, Bjoern H. Menze:
Probabilistic Point Cloud Reconstructions for Vertebral Shape Analysis. MICCAI (6) 2019: 375-383
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Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Andrei Gafita, Jan C. Peeken, Stephanie E. Combs, Bjoern H. Menze:
Shape-Aware Complementary-Task Learning for Multi-organ Segmentation. MLMI@MICCAI 2019: 620-627
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Ivan Ezhov, Jana Lipková, Suprosanna Shit, Florian Kofler, Nora Collomb, Benjamin Lemasson, Emmanuel Luc Barbier, Bjoern H. Menze:
Neural Parameters Estimation for Brain Tumor Growth Modeling. MICCAI (2) 2019: 787-795
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Hongwei Li, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jianguo Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze:
DiamondGAN: Unified Multi-modal Generative Adversarial Networks for MRI Sequences Synthesis. MICCAI (4) 2019: 795-803
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Jiechao Ma, Xiang Li, Hongwei Li, Bjoern H. Menze, Sen Liang, Rongguo Zhang, Wei-Shi Zheng:
Group-Attention Single-Shot Detector (GA-SSD): Finding Pulmonary Nodules in Large-Scale CT Images. MIDL 2019: 358-369
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  - journals/corr/abs-1901-04056
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Patrick Bilic, Patrick Ferdinand Christ, Eugene Vorontsov, Grzegorz Chlebus, Hao Chen, Qi Dou, Chi-Wing Fu, Xiao Han, Pheng-Ann Heng, Jürgen Hesser, Samuel Kadoury, Tomasz K. Konopczynski, Miao Le, Chunming Li, Xiaomeng Li, Jana Lipková, John S. Lowengrub, Hans Meine, Jan Hendrik Moltz, Chris Pal, Marie Piraud, Xiaojuan Qi, Jin Qi, Markus Rempfler, Karsten Roth, Andrea Schenk, Anjany Sekuboyina, Ping Zhou, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Felix Grün, Georgios Kaissis, Fabian Lohöfer, Rickmer Braren, Julian Holch, Felix Hofmann, Wieland H. Sommer, Volker Heinemann, Colin Jacobs, Gabriel Efrain Humpire Mamani, Bram van Ginneken, Gabriel Chartrand, An Tang, Michal Drozdzal, Avi Ben-Cohen, Eyal Klang, Michal Marianne Amitai, Eli Konen, Hayit Greenspan, Johan Moreau, Alexandre Hostettler, Luc Soler, Refael Vivanti, Adi Szeskin, Naama Lev-Cohain, Jacob Sosna, Leo Joskowicz, Bjoern H. Menze:
The Liver Tumor Segmentation Benchmark (LiTS). CoRR abs/1901.04056 (2019)
[i34]
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Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze:
Adversarially Learning a Local Anatomical Prior: Vertebrae Labelling with 2D reformations. CoRR abs/1902.02205 (2019)
[i33]
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  - journals/corr/abs-1902-09063
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Amber L. Simpson, Michela Antonelli, Spyridon Bakas, Michel Bilello, Keyvan Farahani, Bram van Ginneken, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Jennifer Golia-Pernicka, Stephan Heckers, William R. Jarnagin, Maureen McHugo, Sandy Napel, Eugene Vorontsov, Lena Maier-Hein, M. Jorge Cardoso:
A large annotated medical image dataset for the development and evaluation of segmentation algorithms. CoRR abs/1902.09063 (2019)
[i32]
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  - journals/corr/abs-1904-12894
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Hongwei Li, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jianguo Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze:
DiamondGAN: Unified Multi-Modal Generative Adversarial Networks for MRI Sequences Synthesis. CoRR abs/1904.12894 (2019)
[i31]
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  - journals/corr/abs-1907-00528
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Jiechao Ma, Sen Liang, Xiang Li, Hongwei Li, Bjoern H. Menze, Rongguo Zhang, Wei-Shi Zheng:
Cross-view Relation Networks for Mammogram Mass Detection. CoRR abs/1907.00528 (2019)
[i30]
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  - journals/corr/abs-1907-00973
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Ivan Ezhov, Jana Lipková, Suprosanna Shit, Florian Kofler, Nora Collomb, Benjamin Lemasson, Emmanuel Luc Barbier, Bjoern H. Menze:
Neural parameters estimation for brain tumor growth modeling. CoRR abs/1907.00973 (2019)
[i29]
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  - journals/corr/abs-1907-09254
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Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch, Maximilian Löffler, Jan S. Kirschke, Bjoern H. Menze:
Probabilistic Point Cloud Reconstructions for Vertebral Shape Analysis. CoRR abs/1907.09254 (2019)
[i28]
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  - journals/corr/abs-1908-05099
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Fernando Navarro, Suprosanna Shit, Ivan Ezhov, Johannes C. Paetzold, Andrei Gafita, Jan Peeken, Stephanie Combs, Bjoern H. Menze:
Shape-Aware Complementary-Task Learning for Multi-Organ Segmentation. CoRR abs/1908.05099 (2019)
[i27]
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  - journals/corr/abs-1908-09298
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Jingkun Chen, Hongwei Li, Jianguo Zhang, Bjoern H. Menze:
Adversarial Convolutional Networks with Weak Domain-Transfer for Multi-Sequence Cardiac MR Images Segmentation. CoRR abs/1908.09298 (2019)
[i26]
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  - journals/corr/abs-1910-03452
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Suprosanna Shit, Abinav Ravi Venkatakrishnan, Ivan Ezhov, Jana Lipková, Marie Piraud, Bjoern H. Menze:
Implicit Neural Solver for Time-dependent Linear PDEs with Convergence Guarantee. CoRR abs/1910.03452 (2019)
[i25]
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  - journals/corr/abs-1911-13218
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Ahmed Hosny, Michael Schwier, Christoph Berger, Evin Pinar Örnek, Mehmet Turan, Phi V. Tran, Leon Weninger, Fabian Isensee, Klaus H. Maier-Hein, Richard McKinley, Michael T. Lu, Udo Hoffmann, Bjoern H. Menze, Spyridon Bakas, Andriy Fedorov, Hugo J. W. L. Aerts:
ModelHub.AI: Dissemination Platform for Deep Learning Models. CoRR abs/1911.13218 (2019)
2018
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Markus Rempfler, Valentin Stierle, Konstantin Ditzel, Sanjeev Kumar, Philipp Paulitschke, Bjoern Andres, Bjoern H. Menze:
Tracing cell lineages in videos of lens-free microscopy. Medical Image Anal. 48: 147-161 (2018)
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Xu Han, Roland Kwitt, Stephen R. Aylward, Spyridon Bakas, Bjoern H. Menze, Alexander Asturias, Paul M. Vespa, John D. Van Horn, Marc Niethammer:
Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach. NeuroImage 176: 431-445 (2018)
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Hongwei Li, Gongfa Jiang, Jianguo Zhang, Ruixuan Wang, Zhaolei Wang, Wei-Shi Zheng, Bjoern H. Menze:
Fully convolutional network ensembles for white matter hyperintensities segmentation in MR images. NeuroImage 183: 650-665 (2018)
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  - conf/eccv/PiraudSM18
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Marie Piraud, Anjany Sekuboyina, Björn H. Menze:
Multi-level Activation for Segmentation of Hierarchically-Nested Classes. ECCV Workshops (6) 2018: 345-353
[c71]
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  - conf/icpr/ZhaoLZTNM18
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Yu Zhao, Hongwei Li, Rong Zhou, Giles Tetteh, Marc Niethammer, Bjoern H. Menze:
Automatic Multi-Atlas Segmentation for Abdominal Images Using Template Construction and Robust Principal Component Analysis. ICPR 2018: 3880-3885
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Matthias Perkonigg, Johannes Hofmanninger, Björn H. Menze, Marc-André Weber, Georg Langs:
Detecting Bone Lesions in Multiple Myeloma Patients Using Transfer Learning. DATRA/PIPPI@MICCAI 2018: 22-30
[c69]
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  - conf/miccai/UlasTKPM18
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Cagdas Ulas, Giles Tetteh, Stephan Kaczmarz, Christine Preibisch, Bjoern H. Menze:
DeepASL: Kinetic Model Incorporated Loss for Denoising Arterial Spin Labeled MRI via Deep Residual Learning. MICCAI (1) 2018: 30-38
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Cagdas Ulas, Giles Tetteh, Michael J. Thrippleton, Paul A. Armitage, Stephen D. Makin, Joanna M. Wardlaw, Mike E. Davies, Bjoern H. Menze:
Direct Estimation of Pharmacokinetic Parameters from DCE-MRI Using Deep CNN with Forward Physical Model Loss. MICCAI (1) 2018: 39-47
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  - conf/miccai/LicandroHWML18
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Roxane Licandro, Johannes Hofmanninger, Marc-André Weber, Björn H. Menze, Georg Langs:
Predicting Future Bone Infiltration Patterns in Multiple Myeloma. Patch-MI@MICCAI 2018: 76-84
[c66]
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  - conf/miccai/Molina-RomeroWG18
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Miguel Molina-Romero, Benedikt Wiestler, Pedro A. Gómez, Marion I. Menzel, Bjoern H. Menze:
Deep Learning with Synthetic Diffusion MRI Data for Free-Water Elimination in Glioblastoma Cases. MICCAI (3) 2018: 98-106
[c65]
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Xiaobin Hu, Hongwei Li, Yu Zhao, Chao Dong, Bjoern H. Menze, Marie Piraud:
Hierarchical Multi-class Segmentation of Glioma Images Using Networks with Multi-level Activation Function. BrainLes@MICCAI (2) 2018: 116-127
[c64]
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Hongwei Li, Jianguo Zhang, Mark Mühlau, Jan Kirschke, Bjoern H. Menze:
Multi-scale Convolutional-Stack Aggregation for Robust White Matter Hyperintensities Segmentation. BrainLes@MICCAI (1) 2018: 199-207
[c63]
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Hongwei Li, Andrii Zhygallo, Bjoern H. Menze:
Automatic Brain Structures Segmentation Using Deep Residual Dilated U-Net. BrainLes@MICCAI (1) 2018: 385-393
[c62]
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  - conf/miccai/ReinkeEOSSFBLMM18
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Annika Reinke, Matthias Eisenmann, Sinan Onogur, Marko Stankovic, Patrick Scholz, Peter M. Full, Hrvoje Bogunovic, Bennett A. Landman, Oskar Maier, Bjoern H. Menze, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Fons van der Sommen, Guoyan Zheng, Henning Müller, Michal Kozubek, Tal Arbel, Andrew P. Bradley, Pierre Jannin, Annette Kopp-Schneider, Lena Maier-Hein:
How to Exploit Weaknesses in Biomedical Challenge Design and Organization. MICCAI (4) 2018: 388-395
[c61]
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  - conf/miccai/SekuboyinaRKTVK18
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Anjany Sekuboyina, Markus Rempfler, Jan Kukacka, Giles Tetteh, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze:
Btrfly Net: Vertebrae Labelling with Energy-Based Adversarial Learning of Local Spine Prior. MICCAI (4) 2018: 649-657
[e9]
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Alessandro Crimi, Spyridon Bakas, Hugo J. Kuijf, Bjoern H. Menze, Mauricio Reyes:
Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, 2017, Revised Selected Papers. Lecture Notes in Computer Science 10670, Springer 2018, ISBN 978-3-319-75237-2 [contents]
[i24]
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  - journals/corr/abs-1802-05203
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Hongwei Li, Gongfa Jiang, Ruixuan Wang, Jianguo Zhang, Zhaolei Wang, Wei-Shi Zheng, Bjoern H. Menze:
Fully Convolutional Network Ensembles for White Matter Hyperintensities Segmentation in MR Images. CoRR abs/1802.05203 (2018)
[i23]
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  - journals/corr/abs-1803-09340
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Giles Tetteh, Velizar Efremov, Nils D. Forkert, Matthias Schneider, Jan Kirschke, Bruno Weber, Claus Zimmer, Marie Piraud, Bjoern H. Menze:
DeepVesselNet: Vessel Segmentation, Centerline Prediction, and Bifurcation Detection in 3-D Angiographic Volumes. CoRR abs/1803.09340 (2018)
[i22]
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  - journals/corr/abs-1804-01307
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Anjany Sekuboyina, Markus Rempfler, Jan Kukacka, Giles Tetteh, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze:
Btrfly Net: Vertebrae Labelling with Energy-based Adversarial Learning of Local Spine Prior. CoRR abs/1804.01307 (2018)
[i21]
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  - journals/corr/abs-1804-01910
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Marie Piraud, Anjany Sekuboyina, Bjoern H. Menze:
Multi-level Activation for Segmentation of Hierarchically-nested Classes. CoRR abs/1804.01910 (2018)
[i20]
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  - journals/corr/abs-1804-02745
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Cagdas Ulas, Giles Tetteh, Michael J. Thrippleton, Paul A. Armitage, Stephen D. Makin, Joanna M. Wardlaw, Mike E. Davies, Bjoern H. Menze:
Direct Estimation of Pharmacokinetic Parameters from DCE-MRI using Deep CNN with Forward Physical Model Loss. CoRR abs/1804.02745 (2018)
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Cagdas Ulas, Giles Tetteh, Stephan Kaczmarz, Christine Preibisch, Bjoern H. Menze:
DeepASL: Kinetic Model Incorporated Loss for Denoising Arterial Spin Labeled MRI via Deep Residual Learning. CoRR abs/1804.02755 (2018)
[i18]
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Dhritiman Das, Eduardo Coello, Rolf F. Schulte, Bjoern H. Menze:
Qunatification of Metabolites in MR Spectroscopic Imaging using Machine Learning. CoRR abs/1805.10201 (2018)
[i17]
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Hongwei Li, Kanru Lin, Maximilian Reichert, Lina Xu, Rickmer Braren, Deliang Fu, Roland Schmid, Ji Li, Bjoern Holger Menze, Kuangyu Shi:
Differential Diagnosis for Pancreatic Cysts in CT Scans Using Densely-Connected Convolutional Networks. CoRR abs/1806.01023 (2018)
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Lena Maier-Hein, Matthias Eisenmann, Annika Reinke, Sinan Onogur, Marko Stankovic, Patrick Scholz, Tal Arbel, Hrvoje Bogunovic, Andrew P. Bradley, Aaron Carass, Carolin Feldmann, Alejandro F. Frangi, Peter M. Full, Bram van Ginneken, Allan Hanbury, Katrin Honauer, Michal Kozubek, Bennett A. Landman, Keno März, Oskar Maier, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Peter F. Neher, Wiro J. Niessen, Nasir M. Rajpoot, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Christian Stock, Danail Stoyanov, Abdel Aziz Taha, Fons van der Sommen, Ching-Wei Wang, Marc-André Weber, Guoyan Zheng, Pierre Jannin, Annette Kopp-Schneider:
Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions. CoRR abs/1806.02051 (2018)
[i15]
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  - journals/corr/abs-1807-00499
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Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze:
Personalized Radiotherapy Planning for Glioma Using Multimodal Bayesian Model Calibration. CoRR abs/1807.00499 (2018)
[i14]
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Hongwei Li, Jianguo Zhang, Mark Mühlau, Jan Kirschke, Bjoern H. Menze:
Multi-Scale Convolutional-Stack Aggregation for Robust White Matter Hyperintensities Segmentation. CoRR abs/1807.05153 (2018)
[i13]
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Hongwei Li, Andrii Zhygallo, Bjoern H. Menze:
Automatic Brain Structures Segmentation Using Deep Residual Dilated U-Net. CoRR abs/1811.04312 (2018)
[i12]
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Ezequiel de la Rosa, Diana Maria Sima, Thijs Vande Vyvere, Jan S. Kirschke, Bjoern H. Menze:
A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans. CoRR abs/1811.05699 (2018)
[i11]
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Jiechao Ma, Xiang Li, Hongwei Li, Bjoern H. Menze, Sen Liang, Rongguo Zhang, Wei-Shi Zheng:
Group-Attention Single-Shot Detector (GA-SSD): Finding Pulmonary Nodules in Large-Scale CT Images. CoRR abs/1812.07166 (2018)
2017
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Oskar Maier, Bjoern H. Menze, Janina von der Gablentz, Levin Häni, Mattias P. Heinrich, Matthias Liebrand, Stefan Winzeck, Abdul Basit, Paul Bentley, Liang Chen, Daan Christiaens, Francis Dutil, Karl Egger, Chaolu Feng, Ben Glocker, Michael Götz, Tom Haeck, Hanna-Leena Halme, Mohammad Havaei, Khan M. Iftekharuddin, Pierre-Marc Jodoin, et al.:
ISLES 2015 - A public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI. Medical Image Anal. 35: 250-269 (2017)
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Marie Bieth, Loïc Peter, Stephan G. Nekolla, Matthias Eiber, Georg Langs, Markus Schwaiger, Bjoern H. Menze:
Segmentation of Skeleton and Organs in Whole-Body CT Images via Iterative Trilateration. IEEE Trans. Medical Imaging 36(11): 2276-2286 (2017)
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Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres:
Efficient Algorithms for Moral Lineage Tracing. ICCV 2017: 4705-4714
[c59]
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Patrick Ferdinand Christ, Sebastian Schlecht, Florian Ettlinger, Felix Grün, Christoph Heinle, Sunil Tatavarty, Seyed-Ahmad Ahmadi, Klaus Diepold, Bjoern H. Menze:
Diabetes60 - Inferring Bread Units From Food Images Using Fully Convolutional Neural Networks. ICCV Workshops 2017: 1526-1535
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Patrick Ferdinand Christ, Florian Ettlinger, Georgios Kaissis, Sebastian Schlecht, Freba Ahmaddy, Felix Grün, Alexander Valentinitsch, Seyed-Ahmad Ahmadi, Rickmer Braren, Bjoern H. Menze:
SurvivalNet: Predicting patient survival from diffusion weighted magnetic resonance images using cascaded fully convolutional and 3D Convolutional Neural Networks. ISBI 2017: 839-843
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Marie Bieth, Esther Alberts, Markus Schwaiger, Bjoern H. Menze:
From Large to Small Organ Segmentation in CT Using Regional Context. MLMI@MICCAI 2017: 1-9
[c56]
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Markus Rempfler, Sanjeev Kumar, Valentin Stierle, Philipp Paulitschke, Bjoern Andres, Bjoern H. Menze:
Cell Lineage Tracing in Lens-Free Microscopy Videos. MICCAI (2) 2017: 3-11
[c55]
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Lina Xu, Giles Tetteh, Mona Mustafa, Jana Lipková, Yu Zhao, Marie Bieth, Patrick Ferdinand Christ, Marie Piraud, Bjoern H. Menze, Kuangyu Shi:
W-Net for Whole-Body Bone Lesion Detection on ^68 Ga-Pentixafor PET/CT Imaging of Multiple Myeloma Patients. CMMI/RAMBO/SWITCH@MICCAI 2017: 23-30
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Markus Rempfler, Bjoern Andres, Bjoern H. Menze:
Uncertainty Estimation in Vascular Networks. GRAIL/MFCA/MICGen@MICCAI 2017: 42-52
[c53]
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Anjany Sekuboyina, Jan Kukacka, Jan S. Kirschke, Bjoern H. Menze, Alexander Valentinitsch:
Attention-Driven Deep Learning for Pathological Spine Segmentation. MSKI@MICCAI 2017: 108-119
[c52]
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Esther Alberts, Giles Tetteh, Stefano Trebeschi, Marie Bieth, Alexander Valentinitsch, Benedikt Wiestler, Claus Zimmer, Bjoern H. Menze:
Multi-modal Image Classification Using Low-Dimensional Texture Features for Genomic Brain Tumor Recognition. GRAIL/MFCA/MICGen@MICCAI 2017: 201-209
[c51]
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Johannes Hofmanninger, Bjoern H. Menze, Marc-André Weber, Georg Langs:
Mapping Multi-Modal Routine Imaging Data to a Single Reference via Multiple Templates. DLMIA/ML-CDS@MICCAI 2017: 341-348
[c50]
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Giles Tetteh, Markus Rempfler, Claus Zimmer, Bjoern H. Menze:
Deep-FExt: Deep Feature Extraction for Vessel Segmentation and Centerline Prediction. MLMI@MICCAI 2017: 344-352
[c49]
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Dhritiman Das, Eduardo Coello, Rolf F. Schulte, Bjoern H. Menze:
Quantification of Metabolites in Magnetic Resonance Spectroscopic Imaging Using Machine Learning. MICCAI (3) 2017: 462-470
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Henning Müller, B. Michael Kelm, Tal Arbel, Weidong Cai, Manual Jorge Cardoso, Georg Langs, Bjoern H. Menze, Dimitris N. Metaxas, Albert Montillo, William M. Wells III, Shaoting Zhang, Albert C. S. Chung, Mark Jenkinson, Annemie Ribbens:
Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging - MICCAI 2016 International Workshops, MCV and BAMBI, Athens, Greece, October 21, 2016, Revised Selected Papers. Lecture Notes in Computer Science 10081, Springer 2017, ISBN 978-3-319-61187-7 [contents]
[i10]
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Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres:
Efficient Algorithms for Moral Lineage Tracing. CoRR abs/1702.04111 (2017)
[i9]
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Patrick Ferdinand Christ, Florian Ettlinger, Georgios Kaissis, Sebastian Schlecht, Freba Ahmaddy, Felix Grün, Alexander Valentinitsch, Seyed-Ahmad Ahmadi, Rickmer Braren, Bjoern H. Menze:
SurvivalNet: Predicting patient survival from diffusion weighted magnetic resonance images using cascaded fully convolutional and 3D convolutional neural networks. CoRR abs/1702.05941 (2017)
[i8]
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Patrick Ferdinand Christ, Florian Ettlinger, Felix Grün, Mohamed Ezzeldin A. Elshaer, Jana Lipková, Sebastian Schlecht, Freba Ahmaddy, Sunil Tatavarty, Marc Bickel, Patrick Bilic, Markus Rempfler, Felix Hofmann, Melvin D'Anastasi, Seyed-Ahmad Ahmadi, Georgios Kaissis, Julian Holch, Wieland H. Sommer, Rickmer Braren, Volker Heinemann, Bjoern H. Menze:
Automatic Liver and Tumor Segmentation of CT and MRI Volumes using Cascaded Fully Convolutional Neural Networks. CoRR abs/1702.05970 (2017)
[i7]
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Anjany Sekuboyina, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze:
A Localisation-Segmentation Approach for Multi-label Annotation of Lumbar Vertebrae using Deep Nets. CoRR abs/1703.04347 (2017)
[i6]
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Jana Lipková, Markus Rempfler, Patrick Ferdinand Christ, John S. Lowengrub, Bjoern H. Menze:
Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation. CoRR abs/1704.02348 (2017)
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Giles Tetteh, Markus Rempfler, Bjoern H. Menze, Claus Zimmer:
Deep-FExt: Deep Feature Extraction for Vessel Segmentation and Centerline Prediction. CoRR abs/1704.03743 (2017)
[i4]
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Cagdas Ulas, Christine Preibisch, Jonathan Sperl, Thomas Pyka, Jayashree Kalpathy-Cramer, Bjoern Holger Menze:
Accelerated Reconstruction of Perfusion-Weighted MRI Enforcing Jointly Local and Nonlocal Spatio-temporal Constraints. CoRR abs/1708.07808 (2017)
[i3]
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Xu Han, Roland Kwitt, Stephen R. Aylward, Bjoern H. Menze, Alexander Asturias, Paul M. Vespa, John D. Van Horn, Marc Niethammer:
Brain Extraction from Normal and Pathological Images: A Joint PCA/Image-Reconstruction Approach. CoRR abs/1711.05702 (2017)
2016
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Tsachi Hershkovich, Tamar Shalmon, Ohad Shitrit, Nir Halay, Bjoern H. Menze, Irit Dolgopyat, Itamar Kahn, Ilan Shelef, Tammy Riklin Raviv:
Probabilistic model for 3D interactive segmentation. Comput. Vis. Image Underst. 151: 47-60 (2016)
[j15]
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Bjoern H. Menze, Koen Van Leemput, Danial Lashkari, Tammy Riklin-Raviv, Ezequiel Geremia, Esther Alberts, Philipp Gruber, Susanne Wegener, Marc-André Weber, Gábor Székely, Nicholas Ayache, Polina Golland:
A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation - With Application to Tumor and Stroke. IEEE Trans. Medical Imaging 35(4): 933-946 (2016)
[j14]
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Oscar Alfonso Jiménez del Toro, Henning Müller, Markus Krenn, Katharina Gruenberg, Abdel Aziz Taha, Marianne Winterstein, Ivan Eggel, Antonio Foncubierta-Rodríguez, Orcun Goksel, András Jakab, Georgios Kontokotsios, Georg Langs, Bjoern H. Menze, Tomas Salas Fernandez, Roger Schaer, Anna Walleyo, Marc-André Weber, Yashin Dicente Cid, Tobias Gass, Mattias P. Heinrich, Fucang Jia, Fredrik Kahl, Razmig Kéchichian, Dominic Mai, Assaf B. Spanier, Graham Vincent, Chunliang Wang, Daniel Wyeth, Allan Hanbury:
Cloud-Based Evaluation of Anatomical Structure Segmentation and Landmark Detection Algorithms: VISCERAL Anatomy Benchmarks. IEEE Trans. Medical Imaging 35(11): 2459-2475 (2016)
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Vasileios Zografos, Kai Krajsek, Bjoern H. Menze:
An Online Algorithm for Efficient and Temporally Consistent Subspace Clustering. ACCV (1) 2016: 353-368
[c47]
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Patrick Ferdinand Christ, Florian Lachner, Axel Hösl, Bjoern H. Menze, Klaus Diepold, Andreas Butz:
Human-Drone-Interaction: A Case Study to Investigate the Relation Between Autonomy and User Experience. ECCV Workshops (2) 2016: 238-253
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Cagdas Ulas, Pedro A. Gómez, Jonathan I. Sperl, Christine Preibisch, Bjoern H. Menze:
Spatio-temporal MRI reconstruction by enforcing local and global regularity via dynamic total variation and nuclear norm minimization. ISBI 2016: 306-309
[c45]
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Esther Alberts, Markus Rempfler, Georgina Alber, Thomas Huber, Jan Kirschke, Claus Zimmer, Bjoern H. Menze:
Uncertainty quantification in brain tumor segmentation using CRFs and random perturbation models. ISBI 2016: 428-431
[c44]
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Udhayaraj Sivalingam, Michael Wels, Markus Rempfler, Stefan Grosskopf, Michael Sühling, Bjoern H. Menze:
Inner and outer coronary vessel wall segmentation from CCTA using an active contour model with machine learning-based 3D voxel context-aware image force. Computer-Aided Diagnosis 2016: 978502
[c43]
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Cagdas Ulas, Pedro A. Gómez, Felix Krahmer, Jonathan I. Sperl, Marion I. Menzel, Bjoern H. Menze:
Robust Reconstruction of Accelerated Perfusion MRI Using Local and Nonlocal Constraints. RAMBO+HVSMR@MICCAI 2016: 37-47
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Markus Rempfler, Bjoern Andres, Bjoern H. Menze:
The Minimum Cost Connected Subgraph Problem in Medical Image Analysis. MICCAI (3) 2016: 397-405
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Patrick Ferdinand Christ, Mohamed Ezzeldin A. Elshaer, Florian Ettlinger, Sunil Tatavarty, Marc Bickel, Patrick Bilic, Markus Rempfler, Marco Armbruster, Felix Hofmann, Melvin D'Anastasi, Wieland H. Sommer, Seyed-Ahmad Ahmadi, Bjoern H. Menze:
Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields. MICCAI (2) 2016: 415-423
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Pedro A. Gómez, Miguel Molina-Romero, Cagdas Ulas, Guido Bounincontri, Jonathan I. Sperl, Derek K. Jones, Marion I. Menzel, Bjoern H. Menze:
Simultaneous Parameter Mapping, Modality Synthesis, and Anatomical Labeling of the Brain with MR Fingerprinting. MICCAI (3) 2016: 579-586
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Dhritiman Das, Eduardo Coello, Rolf F. Schulte, Bjoern H. Menze:
Spatially Adaptive Spectral Denoising for MR Spectroscopic Imaging using Frequency-Phase Non-local Means. MICCAI (3) 2016: 596-604
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Daniel Andreasen, Jens M. Edmund, Vasileios Zografos, Bjoern H. Menze, Koen Van Leemput:
Computed tomography synthesis from magnetic resonance images in the pelvis using multiple random forests and auto-context features. Image Processing 2016: 978417
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Alessandro Crimi, Bjoern H. Menze, Oskar Maier, Mauricio Reyes, Heinz Handels:
Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - First International Workshop, Brainles 2015, Held in Conjunction with MICCAI 2015, Munich, Germany, October 5, 2015, Revised Selected Papers. Lecture Notes in Computer Science 9556, Springer 2016, ISBN 978-3-319-30857-9 [contents]
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Bjoern H. Menze, Georg Langs, Albert Montillo, B. Michael Kelm, Henning Müller, Shaoting Zhang, Tom Weidong Cai, Dimitris N. Metaxas:
Medical Computer Vision: Algorithms for Big Data - International Workshop, MCV 2015, Held in Conjunction with MICCAI 2015, Munich, Germany, October 9, 2015, Revised Selected Papers. Lecture Notes in Computer Science 9601, Springer 2016, ISBN 978-3-319-42015-8 [contents]
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Alessandro Crimi, Bjoern H. Menze, Oskar Maier, Mauricio Reyes, Stefan Winzeck, Heinz Handels:
Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - Second International Workshop, BrainLes 2016, with the Challenges on BRATS, ISLES and mTOP 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Revised Selected Papers. Lecture Notes in Computer Science 10154, 2016, ISBN 978-3-319-55523-2 [contents]
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Markus Rempfler, Bjoern Andres, Bjoern H. Menze:
The Minimum Cost Connected Subgraph Problem in Medical Image Analysis. CoRR abs/1606.06135 (2016)
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Patrick Ferdinand Christ, Mohamed Ezzeldin A. Elshaer, Florian Ettlinger, Sunil Tatavarty, Marc Bickel, Patrick Bilic, Markus Rempfler, Marco Armbruster, Felix Hofmann, Melvin D'Anastasi, Wieland H. Sommer, Seyed-Ahmad Ahmadi, Bjoern H. Menze:
Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields. CoRR abs/1610.02177 (2016)
2015
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Matthias Schneider, Sven Hirsch, Bruno Weber, Gábor Székely, Bjoern H. Menze:
Joint 3-D vessel segmentation and centerline extraction using oblique Hough forests with steerable filters. Medical Image Anal. 19(1): 220-249 (2015)
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Markus Rempfler, Matthias Schneider, Giovanna D. Ielacqua, Xianghui Xiao, Stuart R. Stock, Jan Klohs, Gábor Székely, Bjoern Andres, Bjoern H. Menze:
Reconstructing cerebrovascular networks under local physiological constraints by integer programming. Medical Image Anal. 25(1): 86-94 (2015)
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Bjoern H. Menze, András Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin S. Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth R. Gerstner, Marc-André Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Herve Delingette, Çagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, José Antonio Mariz, Raphael Meier, Sérgio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin Raviv, Syed M. S. Reza, Michael T. Ryan, Duygu Sarikaya, Lawrence H. Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva, Nuno J. Sousa, Nagesh K. Subbanna, Gábor Székely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gözde B. Ünal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes, Koen Van Leemput:
The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Trans. Medical Imaging 34(10): 1993-2024 (2015)
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Markus Rempfler, Matthias Schneider, Giovanna D. Ielacqua, Tim Sprenger, Xianghui Xiao, Stuart R. Stock, Jan Klohs, Gábor Székely, Bjoern Andres, Bjoern H. Menze:
Rekonstruktion zerebraler Gefässnetzwerke aus in-vivo μMRA mittels physiologischem Vorwissen zur lokalen Gefässgeometrie. Bildverarbeitung für die Medizin 2015: 161-166
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Marie Bieth, Rene Donner, Georg Langs, Markus Schwaiger, Bjoern H. Menze:
Anatomical triangulation: from sparse landmarks to dense annotation of the skeleton in CT images. BMVC 2015: 84.1-84.10
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Orcun Goksel, Antonio Foncubierta-Rodríguez, Oscar Alfonso Jiménez del Toro, Henning Müller, Georg Langs, Marc-André Weber, Bjoern H. Menze, Ivan Eggel, Katharina Gruenberg, Marianne Winterstein, Markus Holzer, Markus Krenn, Georgios Kontokotsios, Sokratis Metallidis, Roger Schaer, Abdel Aziz Taha, András Jakab, Tomas Salas Fernandez, Allan Hanbury:
Overview of the VISCERAL Challenge at ISBI 2015. VISCERAL Challenge@ISBI 2015: 6-11
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Henning Müller, Bjoern H. Menze, Georg Langs, Albert Montillo, B. Michael Kelm, Shaoting Zhang, Weidong Cai, Dimitris N. Metaxas:
Overview of the 2015 Workshop on Medical Computer Vision - Algorithms for Big Data (MCV 2015). MCV@MICCAI 2015: 3-9
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Alexandra Derntl, Claudia Plant, Philipp Gruber, Susanne Wegener, Jan S. Bauer, Bjoern H. Menze:
Stroke Lesion Segmentation Using a Probabilistic Atlas of Cerebral Vascular Territories. Brainles@MICCAI 2015: 21-32
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Vasileios Zografos, Alexander Valentinitsch, Markus Rempfler, Federico Tombari, Bjoern H. Menze:
Hierarchical Multi-Organ Segmentation Without Registration in 3D Abdominal CT Images. MCV@MICCAI 2015: 37-46
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Pavel Dvorák, Bjoern H. Menze:
Local Structure Prediction with Convolutional Neural Networks for Multimodal Brain Tumor Segmentation. MCV@MICCAI 2015: 59-71
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Esther Alberts, Guillaume Charpiat, Yuliya Tarabalka, Thomas Huber, Marc-André Weber, Jan S. Bauer, Claus Zimmer, Bjoern H. Menze:
A Nonparametric Growth Model for Brain Tumor Segmentation in Longitudinal MR Sequences. Brainles@MICCAI 2015: 69-79
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Markus Krenn, Matthias Dorfer, Oscar Alfonso Jiménez del Toro, Henning Müller, Bjoern H. Menze, Marc-André Weber, Allan Hanbury, Georg Langs:
Creating a Large-Scale Silver Corpus from Multiple Algorithmic Segmentations. MCV@MICCAI 2015: 103-115
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Pedro A. Gómez, Cagdas Ulas, Jonathan I. Sperl, Tim Sprenger, Miguel Molina-Romero, Marion I. Menzel, Bjoern H. Menze:
Learning a Spatiotemporal Dictionary for Magnetic Resonance Fingerprinting with Compressed Sensing. Patch-MI@MICCAI 2015: 112-119
2014
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Bjoern H. Menze, Jason A. Ur:
Multitemporal Fusion for the Detection of Static Spatial Patterns in Multispectral Satellite Images - With Application to Archaeological Survey. IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens. 7(8): 3513-3524 (2014)
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Yuliya Tarabalka, Guillaume Charpiat, Ludovic Brucker, Bjoern H. Menze:
Spatio-Temporal Video Segmentation With Shape Growth or Shrinkage Constraint. IEEE Trans. Image Process. 23(9): 3829-3840 (2014)
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Henning Müller, Bjoern H. Menze, Georg Langs, Albert Montillo, B. Michael Kelm, Shaoting Zhang, Tom Weidong Cai, Dimitris N. Metaxas:
Overview of the 2014 Workshop on Medical Computer Vision - Algorithms for Big Data (MCV 2014). MCV 2014: 3-10
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Matthias Schneider, Sven Hirsch, Bruno Weber, Gábor Székely, Bjoern H. Menze:
TGIF: Topological Gap In-Fill for Vascular Networks - A Generative PhysiologicalModeling Approach. MICCAI (2) 2014: 89-96
[c25]
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Markus Rempfler, Matthias Schneider, Giovanna D. Ielacqua, Xianghui Xiao, Stuart R. Stock, Jan Klohs, Gábor Székely, Bjoern Andres, Bjoern H. Menze:
Extracting Vascular Networks under Physiological Constraints via Integer Programming. MICCAI (2) 2014: 505-512
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Alexander Ziegler, Björn H. Menze:
Accelerated Acquisition, Visualization, and Analysis of Zoo-Anatomical Data. Computation for Humanity 2014: 235-264
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Bjoern H. Menze, Georg Langs, Albert Montillo, B. Michael Kelm, Henning Müller, Zhuowen Tu:
Medical Computer Vision. Large Data in Medical Imaging - Third International MICCAI Workshop, MCV 2013, Nagoya, Japan, September 26, 2013, Revised Selected Papers. Lecture Notes in Computer Science 8331, Springer 2014, ISBN 978-3-319-05529-9 [contents]
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Bjoern H. Menze, Georg Langs, Albert Montillo, B. Michael Kelm, Henning Müller, Shaoting Zhang, Tom Weidong Cai, Dimitris N. Metaxas:
Medical Computer Vision: Algorithms for Big Data - International Workshop, MCV 2014, Held in Conjunction with MICCAI 2014, Cambridge, MA, USA, September 18, 2014, Revised Selected Papers. Lecture Notes in Computer Science 8848, Springer 2014, ISBN 978-3-319-13971-5 [contents]
2013
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Bjoern Holger Menze, Georg Langs, Zhuowen Tu, Antonio Criminisi:
Whole-body anatomy localization via classification and regression forests. Medical Image Anal. 17(8): 1282 (2013)
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René Donner, Bjoern H. Menze, Horst Bischof, Georg Langs:
Global localization of 3D anatomical structures by pre-filtered Hough Forests and discrete optimization. Medical Image Anal. 17(8): 1304-1314 (2013)
[c24]
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Yuliya Tarabalka, Guillaume Charpiat, Ludovic Brucker, Bjoern H. Menze:
Enforcing Monotonous Shape Growth or Shrinkage in Video Segmentation. BMVC 2013
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Allan Hanbury, Henning Müller, Georg Langs, Bjoern H. Menze:
Cloud-Based Evaluation Framework for Big Data. Future Internet Assembly 2013: 104-114
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Erin Stretton, Ezequiel Geremia, Bjoern H. Menze, Hervé Delingette, Nicholas Ayache:
Importance of patient DTI's to accurately model glioma growth using the reaction diffusion equation. ISBI 2013: 1142-1145
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Ezequiel Geremia, Bjoern H. Menze, Nicholas Ayache:
Spatially Adaptive Random Forests. ISBI 2013: 1344-1347
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Henning Müller, Bjoern H. Menze, Georg Langs, Albert Montillo, B. Michael Kelm, Zhuowen Tu, Oscar Alfonso Jiménez del Toro:
Overview of the 2013 Workshop on Medical Computer Vision (MCV 2013). MCV 2013: 3-10
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Florian Dittmann, Bjoern H. Menze, Ender Konukoglu, Jan Unkelbach:
Use of Diffusion Tensor Images in Glioma Growth Modeling for Radiotherapy Target Delineation. MBIA 2013: 63-73
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Marco Lorenzi, Bjoern H. Menze, Marc Niethammer, Nicholas Ayache, Xavier Pennec:
Sparse Scale-Space Decomposition of Volume Changes in Deformations Fields. MICCAI (2) 2013: 328-335
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Bjoern H. Menze, Georg Langs, Le Lu, Albert Montillo, Zhuowen Tu, Antonio Criminisi:
Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging - Second International MICCAI Workshop, MCV 2012, Nice, France, October 5, 2012, Revised Selected Papers. Lecture Notes in Computer Science 7766, Springer 2013, ISBN 978-3-642-36619-2 [contents]
2012
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Allan Hanbury, Henning Müller, Georg Langs, Marc-André Weber, Bjoern H. Menze, Tomas Salas Fernandez:
Bringing the Algorithms to the Data: Cloud-Based Benchmarking for Medical Image Analysis. CLEF 2012: 24-29
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Georg Langs, Allan Hanbury, Bjoern H. Menze, Henning Müller:
VISCERAL: Towards Large Data in Medical Imaging - Challenges and Directions. MCBR-CDS 2012: 92-98
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Erin Stretton, Emmanuel Mandonnet, Ezequiel Geremia, Bjoern H. Menze, Hervé Delingette, Nicholas Ayache:
Predicting the Location of Glioma Recurrence after a Resection Surgery. STIA 2012: 113-123
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René Donner, Bjoern H. Menze, Horst Bischof, Georg Langs:
Fast Anatomical Structure Localization Using Top-Down Image Patch Regression. MCV 2012: 133-141
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Matthias Schneider, Sven Hirsch, Gábor Székely, Bruno Weber, Bjoern H. Menze:
Oblique Random Forests for 3-D Vessel Detection Using Steerable Filters and Orthogonal Subspace Filtering. MCV 2012: 142-154
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Ezequiel Geremia, Bjoern H. Menze, Marcel Prastawa, Marc-André Weber, Antonio Criminisi, Nicholas Ayache:
Brain Tumor Cell Density Estimation from Multi-modal MR Images Based on a Synthetic Tumor Growth Model. MCV 2012: 273-282
2011
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Georg Langs, Bjoern H. Menze, Danial Lashkari, Polina Golland:
Detecting stable distributed patterns of brain activation using Gini contrast. NeuroImage 56(2): 497-507 (2011)
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Ezequiel Geremia, Olivier Clatz, Bjoern H. Menze, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache:
Spatial decision forests for MS lesion segmentation in multi-channel magnetic resonance images. NeuroImage 57(2): 378-390 (2011)
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Bjoern H. Menze, Koen Van Leemput, Antti Honkela, Ender Konukoglu, Marc-André Weber, Nicholas Ayache, Polina Golland:
A Generative Approach for Image-Based Modeling of Tumor Growth. IPMI 2011: 735-747
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Bjoern H. Menze, B. Michael Kelm, Daniel Nicolas Splitthoff, Ullrich Köthe, Fred A. Hamprecht:
On Oblique Random Forests. ECML/PKDD (2) 2011: 453-469
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Bjoern H. Menze, Georg Langs, Zhuowen Tu, Antonio Criminisi:
Medical Computer Vision. Recognition Techniques and Applications in Medical Imaging - International MICCAI Workshop, MCV 2010, Beijing, China, September 20, 2010, Revised Selected Papers. Lecture Notes in Computer Science 6533, Springer 2011, ISBN 978-3-642-18420-8 [contents]
2010
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Tammy Riklin-Raviv, Koen Van Leemput, Bjoern H. Menze, William M. Wells III, Polina Golland:
Segmentation of image ensembles via latent atlases. Medical Image Anal. 14(5): 654-665 (2010)
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Ender Konukoglu, Olivier Clatz, Bjoern H. Menze, Bram Stieltjes, Marc-André Weber, Emmanuel Mandonnet, Herve Delingette, Nicholas Ayache:
Image Guided Personalization of Reaction-Diffusion Type Tumor Growth Models Using Modified Anisotropic Eikonal Equations. IEEE Trans. Medical Imaging 29(1): 77-95 (2010)
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Frederik O. Kaster, Bjoern H. Menze, Marc-André Weber, Fred A. Hamprecht:
Comparative Validation of Graphical Models for Learning Tumor Segmentations from Noisy Manual Annotations. MCV 2010: 74-85
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Ezequiel Geremia, Bjoern H. Menze, Olivier Clatz, Ender Konukoglu, Antonio Criminisi, Nicholas Ayache:
Spatial Decision Forests for MS Lesion Segmentation in Multi-Channel MR Images. MICCAI (1) 2010: 111-118
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Bjoern H. Menze, Koenraad Van Leemput, Danial Lashkari, Marc-André Weber, Nicholas Ayache, Polina Golland:
A Generative Model for Brain Tumor Segmentation in Multi-Modal Images. MICCAI (2) 2010: 151-159

2000 – 2009

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2009
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Bjoern H. Menze, B. Michael Kelm, Ralf Masuch, Uwe Himmelreich, Peter Bachert, Wolfgang Petrich, Fred A. Hamprecht:
A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data. BMC Bioinform. 10 (2009)
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B. Michael Kelm, Bjoern H. Menze, Oliver Nix, Christian M. Zechmann, Fred A. Hamprecht:
Estimating Kinetic Parameter Maps From Dynamic Contrast-Enhanced MRI Using Spatial Prior Knowledge. IEEE Trans. Medical Imaging 28(10): 1534-1547 (2009)
2007
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Bjoern Holger Menze:
Mustererkennung in der quantitativen Auswertung vektor-wertiger Bilddaten: diagnostische Systeme und Anwendungen. Heidelberg University, 2007
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L. Görlitz, Bjoern H. Menze, Marc-André Weber, B. Michael Kelm, Fred A. Hamprecht:
Semi-supervised Tumor Detection in Magnetic Resonance Spectroscopic Images Using Discriminative Random Fields. DAGM-Symposium 2007: 224-233
2006
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Bjoern H. Menze, B. Michael Kelm, Daniel Heck, Matthias Lichy, Fred A. Hamprecht:
Machine-Based Rejection of Low-Quality Spectra and Estimation of Brain Tumor Probabilities from Magnetic Resonance Spectroscopic Images. Bildverarbeitung für die Medizin 2006: 31-35
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B. Michael Kelm, Bjoern H. Menze, Thomas Neff, Christian M. Zechmann, Fred A. Hamprecht:
CLARET: A Tool for Fully Automated Evaluation of MRSI with Pattern Recognition Methods. Bildverarbeitung für die Medizin 2006: 51-55
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B. Michael Kelm, Natalie Mueller, Bjoern H. Menze, Fred A. Hamprecht:
Bayesian Estimation of Smooth Parameter Maps for Dynamic Contrast-Enhanced MR Images with Block-ICM. CVPR Workshops 2006: 96
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Bjoern H. Menze, B. Michael Kelm, Fred A. Hamprecht:
From Eigenspots to Fisherspots - Latent Spaces in the Nonlinear Detection of Spot Patterns in a Highly Varying Background. GfKl 2006: 255-262
2004
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Bjoern H. Menze, Michael Wormit, Peter Bachert, Matthias Lichy, Heinz-Peter Schlemmer, Fred A. Hamprecht:
Classification of In Vivo Magnetic Resonance Spectra. GfKl 2004: 362-369

Coauthor Index

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