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Katrina M. Waters
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2020 – today
- 2023
- [j15]Ryan S. McClure, Yvonne Rericha, Katrina M. Waters
, Robyn L. Tanguay:
3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism. Frontiers Bioinform. 3 (2023) - [j14]Javier E. Flores, Daniel Claborne, Zachary D. Weller, Bobbie-Jo M. Webb-Robertson, Katrina M. Waters
, Lisa M. Bramer:
Missing data in multi-omics integration: Recent advances through artificial intelligence. Frontiers Artif. Intell. 6 (2023) - 2021
- [j13]Song Feng
, Emily Heath, Brett A. Jefferson
, Cliff A. Joslyn
, Henry Kvinge
, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters
, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer
, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters
, Yoshihiro Kawaoka, Jason E. McDermott
, Emilie Purvine
:
Hypergraph models of biological networks to identify genes critical to pathogenic viral response. BMC Bioinform. 22(1): 287 (2021)
2010 – 2019
- 2019
- [j12]Joseph Brown, Aaron R. Phillips, David A. Lewis, Michael-Andres Mans, Yvonne Chang
, Robert L. Tanguay, Elena S. Peterson, Katrina M. Waters, Susan C. Tilton
:
Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration. BMC Bioinform. 20(1): 255 (2019) - [j11]Ryan S. McClure, Jason P. Wendler
, Joshua N. Adkins, Jesica Swanstrom, Ralph S. Baric, Brooke L. Deatherage Kaiser, Kristie L. Oxford
, Katrina M. Waters
, Jason E. McDermott
:
Unified feature association networks through integration of transcriptomic and proteomic data. PLoS Comput. Biol. 15(9) (2019) - 2016
- [j10]Jason E. McDermott
, Hugh D. Mitchell
, Lisa E. Gralinski, Amie J. Eisfeld
, Laurence Josset
, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton
, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters
:
The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus. BMC Syst. Biol. 10: 93 (2016) - 2013
- [j9]Nicolas Tchitchek, Amie J. Eisfeld
, Jennifer Tisoncik-Go, Laurence Josset
, Lisa E. Gralinski, Christophe Bécavin
, Susan C. Tilton
, Bobbie-Jo M. Webb-Robertson
, Martin T. Ferris, Allison L. Totura
, Chengjun Li, Gabriele Neumann, Thomas O. Metz
, Richard D. Smith
, Katrina M. Waters
, Ralph S. Baric, Yoshihiro Kawaoka, Michael G. Katze:
Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice. BMC Syst. Biol. 7: 69 (2013) - 2012
- [j8]Susan C. Tilton
, Tamara L. Tal
, Sheena M. Scroggins, Jill A. Franzosa, Elena S. Peterson, Robert L. Tanguay, Katrina M. Waters
:
Bioinformatics resource manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools. BMC Bioinform. 13: 311 (2012) - [j7]Jason E. McDermott
, Deborah L. Diamond, Courtney D. Corley, Angela L. Rasmussen
, Michael G. Katze, Katrina M. Waters
:
Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis. BMC Syst. Biol. 6: 28 (2012) - 2011
- [j6]Melissa M. Matzke, Katrina M. Waters
, Thomas O. Metz
, Jon M. Jacobs, Amy C. Sims, Ralph S. Baric, Joel G. Pounds
, Bobbie-Jo M. Webb-Robertson
:
Improved quality control processing of peptide-centric LC-MS proteomics data. Bioinform. 27(20): 2866-2872 (2011) - [j5]Jason E. McDermott
, Harish Shankaran, Amie J. Eisfeld
, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney
, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters
:
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. BMC Syst. Biol. 5: 190 (2011) - 2010
- [j4]Bobbie-Jo M. Webb-Robertson
, William R. Cannon
, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters
:
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinform. 26(13): 1677-1683 (2010)
2000 – 2009
- 2008
- [j3]Bobbie-Jo M. Webb-Robertson
, William R. Cannon
, Christopher S. Oehmen, Anuj R. Shah, Vidhya Gurumoorthi, Mary S. Lipton, Katrina M. Waters
:
A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics. Bioinform. 24(13): 1503-1509 (2008) - [j2]Simon Rogers
, Mark A. Girolami
, Walter Kolch
, Katrina M. Waters
, Tao Liu
, Brian Thrall, H. Steven Wiley
:
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models. Bioinform. 24(24): 2894-2900 (2008) - [c2]Anuj R. Shah, Mudita Singhal, Tara D. Gibson, Chandrika Sivaramakrishnan, Katrina M. Waters
, Ian Gorton:
An Extensible, Scalable Architecture for Managing Bioinformatics Data and Analyses. eScience 2008: 190-197 - 2007
- [j1]Anuj R. Shah, Mudita Singhal, Kyle R. Klicker, Eric G. Stephan
, H. Steven Wiley
, Katrina M. Waters
:
Enabling high-throughput data management for systems biology: The Bioinformatics Resource Manager. Bioinform. 23(7): 906-909 (2007) - 2006
- [c1]Christopher S. Oehmen, Lee Ann McCue
, Joshua N. Adkins
, Katrina M. Waters
, Tim Carlson, William R. Cannon
, Bobbie-Jo M. Webb-Robertson
, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker:
Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge. SC 2006: 299
Coauthor Index

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