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ORCIDDavis J. McCarthy
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2020 – today
- 2024
[j6]Yuanhong Chen
, Yuyuan Liu, Chong Wang, Michael Elliott, Chun Fung Kwok, Carlos A. Peña-Solórzano, Yu Tian, Fengbei Liu, Helen Frazer, Davis J. McCarthy, Gustavo Carneiro:
BRAIxDet: Learning to detect malignant breast lesion with incomplete annotations. Medical Image Anal. 96: 103192 (2024)- [j5]Chong Wang, Yuanhong Chen, Fengbei Liu, Michael Elliott, Chun Fung Kwok, Carlos A. Peña-Solórzano, Helen Frazer, Davis James McCarthy, Gustavo Carneiro:
An Interpretable and Accurate Deep-Learning Diagnosis Framework Modeled With Fully and Semi-Supervised Reciprocal Learning. IEEE Trans. Medical Imaging 43(1): 392-404 (2024) - 2023
- [c3]Chong Wang, Yuyuan Liu, Yuanhong Chen, Fengbei Liu, Yu Tian, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro:
Learning Support and Trivial Prototypes for Interpretable Image Classification. ICCV 2023: 2062-2072 - [i7]Chong Wang, Yuyuan Liu, Yuanhong Chen, Fengbei Liu, Yu Tian, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro:
Learning Support and Trivial Prototypes for Interpretable Image Classification. CoRR abs/2301.04011 (2023) - [i6]Yuanhong Chen, Yuyuan Liu, Chong Wang, Michael Elliott, Chun Fung Kwok, Carlos A. Peña-Solórzano, Yu Tian, Fengbei Liu, Helen Frazer, Davis J. McCarthy, Gustavo Carneiro:
BRAIxDet: Learning to Detect Malignant Breast Lesion with Incomplete Annotations. CoRR abs/2301.13418 (2023) - [i5]Hui Li, Carlos A. Peña-Solórzano, Susan Wei, Davis J. McCarthy:
Technical outlier detection via convolutional variational autoencoder for the ADMANI breast mammogram dataset. CoRR abs/2305.12068 (2023) - [i4]Chong Wang, Yuanhong Chen, Fengbei Liu, Davis James McCarthy, Helen Frazer, Gustavo Carneiro:
Mixture of Gaussian-distributed Prototypes with Generative Modelling for Interpretable Image Classification. CoRR abs/2312.00092 (2023) - 2022
- [j4]Hui Li, Davis J. McCarthy, Heejung Shim, Susan Wei:
Trade-off between conservation of biological variation and batch effect removal in deep generative modeling for single-cell transcriptomics. BMC Bioinform. 23(1): 460 (2022) - [c2]Yuanhong Chen, Hu Wang, Chong Wang, Yu Tian, Fengbei Liu, Yuyuan Liu, Michael Elliott, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro:
Multi-view Local Co-occurrence and Global Consistency Learning Improve Mammogram Classification Generalisation. MICCAI (3) 2022: 3-13 - [c1]Chong Wang, Yuanhong Chen, Yuyuan Liu, Yu Tian, Fengbei Liu, Davis J. McCarthy, Michael Elliott, Helen Frazer, Gustavo Carneiro:
Knowledge Distillation to Ensemble Global and Interpretable Prototype-Based Mammogram Classification Models. MICCAI (3) 2022: 14-24 - [i3]Yuanhong Chen, Hu Wang, Chong Wang, Yu Tian, Fengbei Liu, Michael Elliott, Davis J. McCarthy, Helen Frazer, Gustavo Carneiro:
Multi-view Local Co-occurrence and Global Consistency Learning Improve Mammogram Classification Generalisation. CoRR abs/2209.10478 (2022) - [i2]Chong Wang, Yuanhong Chen, Yuyuan Liu, Yu Tian, Fengbei Liu, Davis J. McCarthy, Michael Elliott, Helen Frazer, Gustavo Carneiro:
Knowledge Distillation to Ensemble Global and Interpretable Prototype-Based Mammogram Classification Models. CoRR abs/2209.12420 (2022)
2010 – 2019
- 2019
- [i1]David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2017
- [j3]Davis J. McCarthy, Kieran R. Campbell, Aaron T. L. Lun, Quin F. Wills:
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R. Bioinform. 33(8): 1179-1186 (2017) - 2010
- [j2]Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth:
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinform. 26(1): 139-140 (2010)
2000 – 2009
- 2009
- [j1]Davis J. McCarthy, Gordon K. Smyth:
Testing significance relative to a fold-change threshold is a TREAT. Bioinform. 25(6): 765-771 (2009)
Coauthor Index
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