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ORCIDRoger D. Kouyos
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Journal Articles
- 2022
[j14]Sara Andresen
, Suraj Balakrishna, Catrina Mugglin, Axel J. Schmidt, Dominique L. Braun, Alex Marzel, Thanh Doco Lecompte, Katharine Ea Darling, Jan A. Roth, Patrick Schmid, Enos Bernasconi, Huldrych F. Günthard, Andri Rauch, Roger D. Kouyos, Luisa Salazar-Vizcaya:
Unsupervised machine learning predicts future sexual behaviour and sexually transmitted infections among HIV-positive men who have sex with men. PLoS Comput. Biol. 18(10): 1010559 (2022)- 2021
- [j13]Viacheslav N. Kachalov, Huyen Nguyen, Suraj Balakrishna, Luisa Salazar-Vizcaya, Rami Sommerstein, Stefan P. Kuster, Anthony Hauser, Pia Abel zur Wiesch, Eili Y. Klein, Roger D. Kouyos:
Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level. PLoS Comput. Biol. 17(1) (2021) - [j12]Burcu Tepekule, Anthony Hauser, Viacheslav N. Kachalov, Sara Andresen, Thomas Scheier, Peter W. Schreiber, Huldrych F. Günthard, Roger D. Kouyos:
Assessing the potential impact of transmission during prolonged viral shedding on the effect of lockdown relaxation on COVID-19. PLoS Comput. Biol. 17(1) (2021) - [j11]Susana Posada-Céspedes, Gert van Zyl, Hesam Montazeri, Jack Kuipers, Soo-Yon Rhee, Roger D. Kouyos, Huldrych F. Günthard, Niko Beerenwinkel:
Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C. PLoS Comput. Biol. 17(9) (2021) - [j10]Suraj Balakrishna, Luisa Salazar-Vizcaya, Axel J. Schmidt, Viacheslav N. Kachalov, Katharina Kusejko, Maria Christine Thurnheer, Jan A. Roth, Dunja Nicca, Matthias Cavassini, Manuel Battegay, Patrick Schmid, Enos Bernasconi, Huldrych F. Günthard, Andri Rauch, Roger D. Kouyos, The Swiss Hiv Cohort Study:
Assessing the drivers of syphilis among men who have sex with men in Switzerland reveals a key impact of screening frequency: A modelling study. PLoS Comput. Biol. 17(10) (2021) - 2019
- [j9]Anthony Hauser, Katharina Kusejko, Leigh F. Johnson, Gilles Wandeler, Julien Riou, Fardo Goldstein, Matthias Egger, Roger D. Kouyos:
Bridging the gap between HIV epidemiology and antiretroviral resistance evolution: Modelling the spread of resistance in South Africa. PLoS Comput. Biol. 15(6) (2019) - 2017
- [j8]David A. Rasmussen, Roger D. Kouyos, Huldrych F. Günthard, Tanja Stadler:
Phylodynamics on local sexual contact networks. PLoS Comput. Biol. 13(3) (2017) - 2016
- [j7]Hesam Montazeri, Jack Kuipers, Roger D. Kouyos, Jürg Böni, Sabine Yerly, Thomas Klimkait, Vincent Aubert, Huldrych F. Günthard, Niko Beerenwinkel, The Swiss Hiv Cohort Study:
Large-scale inference of conjunctive Bayesian networks. Bioinform. 32(17): 727-735 (2016) - [j6]Dominique Cadosch, Pia Abel zur Wiesch, Roger D. Kouyos, Sebastian Bonhoeffer:
The Role of Adherence and Retreatment in De Novo Emergence of MDR-TB. PLoS Comput. Biol. 12(3) (2016) - 2012
- [j5]Gabriel E. Leventhal, Roger D. Kouyos, Tanja Stadler, Viktor von Wyl, Sabine Yerly, Jürg Böni, Cristina Cellerai, Thomas Klimkait, Huldrych F. Günthard, Sebastian Bonhoeffer:
Inferring Epidemic Contact Structure from Phylogenetic Trees. PLoS Comput. Biol. 8(3) (2012) - [j4]Rafal Mostowy, Roger D. Kouyos, Ilka Hoof, Trevor Hinkley, Mojgan Haddad, Jeannette M. Whitcomb, Christos J. Petropoulos, Can Kesmir, Sebastian Bonhoeffer:
Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase. PLoS Comput. Biol. 8(5) (2012) - 2011
- [j3]Roger D. Kouyos, Pia Abel zur Wiesch, Sebastian Bonhoeffer:
Informed Switching Strongly Decreases the Prevalence of Antibiotic Resistance in Hospital Wards. PLoS Comput. Biol. 7(3) (2011) - 2010
- [j2]Roger D. Kouyos, Shari N. Gordon, Silvija I. Staprans, Guido Silvestri, Roland R. Regoes:
Similar Impact of CD8+ T Cell Responses on Early Virus Dynamics during SIV Infections of Rhesus Macaques and Sooty Mangabeys. PLoS Comput. Biol. 6(8) (2010) - 2009
- [j1]Dusan Misevic, Roger D. Kouyos, Sebastian Bonhoeffer:
Predicting the Evolution of Sex on Complex Fitness Landscapes. PLoS Comput. Biol. 5(9) (2009)
Conference and Workshop Papers
- 2010
- [c1]João Martins, Roger D. Kouyos, Trevor Hinkley, Colombe Chappey, Mojgan Haddad, Jeannette M. Whitcomb, Christos J. Petropoulos, Sebastian Bonhoeffer:
Evolution of Recombination on an HIV-1 Derived Fitness Landscape. ALIFE 2010: 487
Coauthor Index
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