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2020 – today
- 2024
[i2]Selim Romero
, Shreyan Gupta, Victoria Gatlin, Robert S. Chapkin, James J. Cai:
Quantum Annealing for Enhanced Feature Selection in Single-Cell RNA Sequencing Data Analysis. CoRR abs/2408.08867 (2024)- 2023
- [j9]Yongjian Yang, Yu-Te Lin, Guanxun Li, Yan Zhong, Qian Xu, James J. Cai:
Interpretable modeling of time-resolved single-cell gene-protein expression with CrossmodalNet. Briefings Bioinform. 24(6) (2023) - 2022
- [j8]Daniel Osório, Marieke L. Kuijjer, James J. Cai:
rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database. Bioinform. 38(2): 580-582 (2022) - [j7]Daniel Osório, Yan Zhong, Guanxun Li, Qian Xu, Yongjian Yang, Yanan Tian, Robert S. Chapkin, Jianhua Z. Huang, James J. Cai:
scTenifoldKnk: An efficient virtual knockout tool for gene function predictions via single-cell gene regulatory network perturbation. Patterns 3(3): 100434 (2022) - [i1]Cristhian Roman-Vicharra, James J. Cai:
Quantum gene regulatory networks. CoRR abs/2206.15362 (2022) - 2021
- [j6]Daniel Osório, James J. Cai:
Systematic determination of the mitochondrial proportion in human and mice tissues for single-cell RNA-sequencing data quality control. Bioinform. 37(7): 963-967 (2021) - 2020
- [j5]James J. Cai:
scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinform. 36(6): 1948-1949 (2020) - [j4]Daniel Osório, Yan Zhong, Guanxun Li, Jianhua Z. Huang, James J. Cai:
scTenifoldNet: A Machine Learning Workflow for Constructing and Comparing Transcriptome-wide Gene Regulatory Networks from Single-Cell Data. Patterns 1(9): 100139 (2020) - [c2]James J. Cai, Daniel Osório:
Single-Cell Gene Regulatory Network Analysis Reveals Potential Mechanisms of Action of Antimalarials Against SARS-CoV-2. ICCABS 2020: 88-94
2010 – 2019
- 2018
- [j3]Jinting Guan, Moliang Chen, Congting Ye, James J. Cai, Guoli Ji:
AEGS: identifying aberrantly expressed gene sets for differential variability analysis. Bioinform. 34(5): 881-883 (2018) - [j2]Ahmad Al Kawam, Mustafa Alshawaqfeh, James J. Cai, Erchin Serpedin, Aniruddha Datta:
Simulating variance heterogeneity in quantitative genome wide association studies. BMC Bioinform. 19-S(3): 35-44 (2018) - 2017
- [c1]Ahmad Al Kawam, Mustafa Alshawaqfeh, James J. Cai, Erchin Serpedin, Aniruddha Datta:
Simulating Variance Heterogeneity in Quantitative Genome Wide Association Studies. BCB 2017: 762-763
2000 – 2009
- 2005
- [j1]James J. Cai, David K. Smith, Xuhua Xia, Kwok-Yung Yuen:
MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution. BMC Bioinform. 6: 64 (2005)
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