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Obi L. Griffith
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2020 – today
- 2024
- [j17]Michael R. Waters, Matthew Inkman, Kay Jayachandran, Roman M. Kowalchuk, Clifford Robinson, Julie K. Schwarz, S. Joshua Swamidass, Obi L. Griffith, Jeffrey J. Szymanski, Jin Zhang:
GAiN: An integrative tool utilizing generative adversarial neural networks for augmented gene expression analysis. Patterns 5(2): 100910 (2024) - 2023
- [j16]Kilannin Krysiak, Arpad M. Danos, Jason Saliba, Joshua F. McMichael, Adam C. Coffman, Susanna Kiwala, Erica K. Barnell, Lana Sheta, Cameron J. Grisdale, Lynzey Kujan, Shahil Pema, Jake Lever, Sarah Ridd, Nicholas C. Spies, Veronica Andric, Andreea Chiorean, Damian Tobias Rieke, Kaitlin A. Clark, Caralyn Reisle, Ajay C. Venigalla, Mark Evans, Payal Jani, Hideaki Takahashi, Avila Suda, Peter Horák, Deborah i Ritter, Xin Zhou, Benjamin J. Ainscough, Sean Delong, Chimene Kesserwan, Mario Lamping, Haolin Shen, Alex Marr, My Hoang, Kartik Singhal, Mariam Khanfar, Brian V. Li, Wan-Hsin Lin, Panieh Terraf, Laura B. Corson, Yasser Salama, Katie M. Campbell, Kirsten M. Farncombe, Jianling Ji, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamanna, Ian King, Kelsy C. Cotto, Zachary L. Skidmore, Jason R. Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y. Patel, Rachel H. Giles, Raymond H. Kim, Lynn M. Schriml, Elaine R. Mardis, Steven J. M. Jones, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H. Wagner, Malachi Griffith, Obi L. Griffith:
CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase. Nucleic Acids Res. 51(D1): 1230-1241 (2023) - 2022
- [j15]Ajay Khanna, David E. Larson, Srivatsan Sridhar, Matthew Mosior, Travis E. Abbott, Susanna Kiwala, Timothy J. Ley, Eric J. Duncavage, Matthew J. Walter, Jason R. Walker, Obi L. Griffith, Malachi Griffith, Christopher A. Miller:
Bam-readcount - rapid generation of basepair-resolution sequence metrics. J. Open Source Softw. 7(69): 3722 (2022) - 2021
- [j14]Sharon L. Freshour, Susanna Kiwala, Kelsy C. Cotto, Adam C. Coffman, Joshua F. McMichael, Jonathan J. Song, Malachi Griffith, Obi L. Griffith, Alex H. Wagner:
Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts. Nucleic Acids Res. 49(Database-Issue): D1144-D1151 (2021)
2010 – 2019
- 2018
- [c3]Subha Madhavan, Deborah Ritter, Christine Micheel, Shruti Rao, Angshumoy Roy, Dmitriy Sonkin, Matthew McCoy, Malachi Griffith, Obi L. Griffith, Peter B. McGarvey, Shashikant Kulkarni:
ClinGen Cancer Somatic Working Group - Standardizing and democratizing access to cancer molecular diagnostic data to drive translational research. PSB 2018: 247-258 - 2016
- [j13]Zachary L. Skidmore, Alex H. Wagner, Robert Lesurf, Katie M. Campbell, Jason Kunisaki, Obi L. Griffith, Malachi Griffith:
GenVisR: Genomic Visualizations in R. Bioinform. 32(19): 3012-3014 (2016) - [j12]Robert Lesurf, Kelsy C. Cotto, Grace Wang, Malachi Griffith, Katayoon Kasaian, Steven J. M. Jones, Stephen B. Montgomery, Obi L. Griffith:
ORegAnno 3.0: a community-driven resource for curated regulatory annotation. Nucleic Acids Res. 44(Database-Issue): 126-132 (2016) - [j11]Alex H. Wagner, Adam C. Coffman, Benjamin J. Ainscough, Nicholas C. Spies, Zachary L. Skidmore, Katie M. Campbell, Kilannin Krysiak, Deng Pan, Joshua F. McMichael, James M. Eldred, Jason R. Walker, Richard K. Wilson, Elaine R. Mardis, Malachi Griffith, Obi L. Griffith:
DGIdb 2.0: mining clinically relevant drug-gene interactions. Nucleic Acids Res. 44(Database-Issue): 1036-1044 (2016) - 2015
- [j10]Runjun D. Kumar, Adam C. Searleman, S. Joshua Swamidass, Obi L. Griffith, Ron Bose:
Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data. Bioinform. 31(22): 3561-3568 (2015) - [j9]Malachi Griffith, Obi L. Griffith, Scott M. Smith, Avinash Ramu, Matthew B. Callaway, Anthony M. Brummett, Michael J. Kiwala, Adam C. Coffman, Allison A. Regier, Benjamin J. Oberkfell, Gabriel E. Sanderson, Thomas P. Mooney, Nathaniel G. Nutter, Edward A. Belter, Feiyu Du, Robert L. Long, Travis E. Abbott, Ian T. Ferguson, David L. Morton, Mark M. Burnett, James V. Weible, Joshua B. Peck, Adam Dukes, Joshua F. McMichael, Justin T. Lolofie, Brian R. Derickson, Jasreet Hundal, Zachary L. Skidmore, Benjamin J. Ainscough, Nathan D. Dees, William S. Schierding, Cyriac Kandoth, Kyung H. Kim, Charles Lu, Christopher C. Harris, Nicole Maher, Christopher A. Maher, Vincent J. Magrini, Benjamin S. Abbott, Ken Chen, Eric Clark, Indraniel Das, Xian Fan, Amy E. Hawkins, Todd G. Hepler, Todd N. Wylie, Shawn M. Leonard, William E. Schroeder, Xiaoqi Shi, Lynn K. Carmichael, Matthew R. Weil, Richard W. Wohlstadter, Gary Stiehr, Michael D. McLellan, Craig S. Pohl, Christopher A. Miller, Daniel C. Koboldt, Jason R. Walker, James M. Eldred, David E. Larson, David J. Dooling, Li Ding, Elaine R. Mardis, Richard K. Wilson:
Genome Modeling System: A Knowledge Management Platform for Genomics. PLoS Comput. Biol. 11(7) (2015) - [j8]Malachi Griffith, Jason R. Walker, Nicholas C. Spies, Benjamin J. Ainscough, Obi L. Griffith:
Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud. PLoS Comput. Biol. 11(8) (2015) - 2014
- [j7]Christopher A. Miller, Brian S. White, Nathan D. Dees, Malachi Griffith, John S. Welch, Obi L. Griffith, Ravi Vij, Michael H. Tomasson, Timothy A. Graubert, Matthew J. Walter, Matthew J. Ellis, William S. Schierding, John F. DiPersio, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding:
SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution. PLoS Comput. Biol. 10(8) (2014) - 2012
- [j6]Byron J. Gao, Obi L. Griffith, Martin Ester, Hui Xiong, Qiang Zhao, Steven J. M. Jones:
On the Deep Order-Preserving Submatrix Problem: A Best Effort Approach. IEEE Trans. Knowl. Data Eng. 24(2): 309-325 (2012) - 2010
- [j5]Steven J. M. Jones, Janessa Laskin, Yvonne Y. Li, Obi L. Griffith, Jianghong An, Mikhail Bilenky, Yaron S. N. Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony P. Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D. Morin, Trevor J. Pugh, Tesa Severson, Sohrab P. Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A. Moore, David G. Huntsman, Inanç Birol, Martin Hirst, Robert A. Holt, Marco A. Marra:
Genomic analysis of a rare human tumor. BMC Bioinform. 11(S-4): O3 (2010)
2000 – 2009
- 2009
- [i1]Obi L. Griffith, Byron J. Gao, Mikhail Bilenky, Yuliya Prichyna, Martin Ester, Steven J. M. Jones:
KiWi: A Scalable Subspace Clustering Algorithm for Gene Expression Analysis. CoRR abs/0904.1931 (2009) - 2008
- [j4]Obi L. Griffith, Stephen B. Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones:
ORegAnno: an open-access community-driven resource for regulatory annotation. Nucleic Acids Res. 36(Database-Issue): 107-113 (2008) - 2007
- [j3]Stephen B. Montgomery, Obi L. Griffith, Johanna M. Schuetz, Angela Brooks-Wilson, Steven J. M. Jones:
A Survey of Genomic Properties for the Detection of Regulatory Polymorphisms. PLoS Comput. Biol. 3(6) (2007) - 2006
- [j2]Stephen B. Montgomery, Obi L. Griffith, Monica C. Sleumer, Casey M. Bergman, Misha Bilenky, Erin Pleasance, Y. Prychyna, X. Zhang, Steven J. M. Jones:
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinform. 22(5): 637-640 (2006) - [j1]Gordon Robertson, Misha Bilenky, Keven Lin, An He, W. Yuen, M. Dagpinar, Richard Varhol, Kevin Teague, Obi L. Griffith, X. Zhang, Y. Pan, Maik Hassel, Monica C. Sleumer, W. Pan, Erin Pleasance, M. Chuang, H. Hao, Yvonne Y. Li, Neil Robertson, C. Fjell, Bernard Li, Stephen B. Montgomery, Tamara Astakhova, Jianjun Zhou, Jörg Sander, Asim S. Siddiqui, Steven J. M. Jones:
cisRED: a database system for genome-scale computational discovery of regulatory elements. Nucleic Acids Res. 34(Database-Issue): 68-73 (2006) - [c2]Byron J. Gao, Obi L. Griffith, Martin Ester, Steven J. M. Jones:
Discovering significant OPSM subspace clusters in massive gene expression data. KDD 2006: 922-928 - 2005
- [c1]Asim S. Siddiqui, Gordon Robertson, Misha Bilenky, Tamara Astakhova, Obi L. Griffith, Maik Hassel, Keven Lin, Stephen B. Montgomery, Mehrdad Oveisi, Erin Pleasance, Neil Robertson, Monica C. Sleumer, Kevin Teague, Richard Varhol, Maggie Zhang, Steven J. M. Jones:
cis-Regulatory Element Prediction in Mammalian Genomes. CSB Workshops 2005: 203-206
Coauthor Index
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