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Ugis Sarkans
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2020 – today
- 2021
- [j22]Ugis Sarkans
, Anja Füllgrabe
, Ahmed Ali, Awais Athar
, Ehsan Behrangi, Nestor Diaz, Silvie Fexova
, Nancy George, Haider Iqbal, Sandeep Kurri, Jhoan Munoz, Juan Camillo Rada, Irene Papatheodorou
, Alvis Brazma
:
From ArrayExpress to BioStudies. Nucleic Acids Res. 49(Database-Issue): D1502-D1506 (2021) - 2020
- [j21]Rachel Drysdale, Charles E. Cook
, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl
, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez
, Nicole Redaschi
, Heinz Stockinger
, Daniel Teixeira, Aravind Venkatesan
, Alex Bateman
, Alan J. Bridge, Guy Cochrane
, Robert D. Finn
, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata
, Per Oksvold, Sandra E. Orchard
, Christine A. Orengo, Helen E. Parkinson
, Bengt Persson, Pablo Porras
, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans
, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding
, Mathias Uhlén
, Sameer Velankar
, Juan Antonio Vizcaíno
, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates
, Niklas Blomberg
, Christine Durinx
, Johanna R. McEntyre
:
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinform. 36(8): 2636-2642 (2020)
2010 – 2019
- 2019
- [j20]Awais Athar
, Anja Füllgrabe
, Nancy George, Haider Iqbal
, Laura Huerta
, Ahmed Ali, Catherine Snow, Nuno A. Fonseca
, Robert Petryszak, Irene Papatheodorou
, Ugis Sarkans
, Alvis Brazma
:
ArrayExpress update - from bulk to single-cell expression data. Nucleic Acids Res. 47(Database-Issue): D711-D715 (2019) - 2018
- [j19]Ugis Sarkans
, Mikhail Gostev, Awais Athar
, Ehsan Behrangi
, Olga Melnichuk, Ahmed Ali
, Jasmine Minguet, Juan Camillo Rada, Catherine Snow
, Andrew Tikhonov, Alvis Brazma
, Johanna R. McEntyre
:
The BioStudies database - one stop shop for all data supporting a life sciences study. Nucleic Acids Res. 46(Database-Issue): D1266-D1270 (2018) - 2017
- [j18]Marco Brandizi
, Olga Melnichuk, Raffael Bild, Florian Kohlmayer
, Benedicto Rodriguez-Castro, Helmut Spengler, Klaus A. Kuhn, Wolfgang Kuchinke
, Christian Ohmann, Timo Mustonen, Mikael Linden, Tommi H. Nyrönen
, Ilkka Lappalainen
, Alvis Brazma
, Ugis Sarkans
:
Orchestrating differential data access for translational research: a pilot implementation. BMC Medical Informatics Decis. Mak. 17(1): 30:1-30:14 (2017) - 2015
- [j17]Diana M. Hendrickx
, Hugo J. W. L. Aerts, Florian Caiment
, Dominic Clark, Timothy M. D. Ebbels
, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig
, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser
, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans
, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger
, Clemens Wittwehr
, Antonella Zanzi
, Jos C. S. Kleinjans:
diXa: a data infrastructure for chemical safety assessment. Bioinform. 31(9): 1505-1507 (2015) - [j16]Catherine Kirsanova, Alvis Brazma
, Gabriella Rustici, Ugis Sarkans
:
Cellular phenotype database: a repository for systems microscopy data. Bioinform. 31(16): 2736-2740 (2015) - [j15]Nikolay Kolesnikov, Emma Hastings
, Maria Keays
, Olga Melnichuk, Y. Amy Tang
, Eleanor Williams, Miroslaw Dylag, Natalja Kurbatova
, Marco Brandizi, Tony Burdett
, Karyn Megy
, Ekaterina Pilicheva, Gabriella Rustici
, Andrew Tikhonov, Helen E. Parkinson
, Robert Petryszak
, Ugis Sarkans
, Alvis Brazma
:
ArrayExpress update - simplifying data submissions. Nucleic Acids Res. 43(Database-Issue): 1113-1116 (2015) - 2014
- [j14]Adam Faulconbridge
, Tony Burdett
, Marco Brandizi, Mikhail Gostev, Rui Pedro Pereira, Drashtti Vasant, Ugis Sarkans
, Alvis Brazma
, Helen E. Parkinson
:
Updates to BioSamples database at European Bioinformatics Institute. Nucleic Acids Res. 42(Database-Issue): 50-52 (2014) - 2013
- [j13]Gabriella Rustici
, Nikolay Kolesnikov
, Marco Brandizi
, Tony Burdett
, Miroslaw Dylag, Ibrahim Emam
, Anna Farne, Emma Hastings
, Jon C. Ison
, Maria Keays
, Natalja Kurbatova
, James Malone, Roby Mani, Annalisa Mupo
, Rui Pedro Pereira, Ekaterina Pilicheva, Johan Rung
, Anjan Sharma, Y. Amy Tang
, Tobias Ternent
, Andrew Tikhonov, Danielle Welter
, Eleanor Williams
, Alvis Brazma
, Helen E. Parkinson
, Ugis Sarkans
:
ArrayExpress update - trends in database growth and links to data analysis tools. Nucleic Acids Res. 41(Database-Issue): 987-990 (2013) - 2012
- [j12]Marco Brandizi
, Natalja Kurbatova
, Ugis Sarkans
, Philippe Rocca-Serra:
graph2tab, a library to convert experimental workflow graphs into tabular formats. Bioinform. 28(12): 1665-1667 (2012) - [j11]Mikhail Gostev, Adam Faulconbridge
, Marco Brandizi
, Julio Fernandez-Banet
, Ugis Sarkans
, Alvis Brazma
, Helen E. Parkinson
:
The BioSample Database (BioSD) at the European Bioinformatics Institute. Nucleic Acids Res. 40(Database-Issue): 64-70 (2012) - 2011
- [j10]Helen E. Parkinson
, Ugis Sarkans
, Nikolay Kolesnikov
, Niran Abeygunawardena, Tony Burdett
, Miroslaw Dylag, Ibrahim Emam
, Anna Farne, Emma Hastings
, Ele Holloway, Natalja Kurbatova
, Margus Lukk
, James Malone, Roby Mani, Ekaterina Pilicheva, Gabriella Rustici
, Anjan Sharma, Eleanor Williams
, Tomasz Adamusiak
, Marco Brandizi
, Nataliya Sklyar, Alvis Brazma
:
ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res. 39(Database-Issue): 1002-1004 (2011)
2000 – 2009
- 2009
- [j9]Maria Krestyaninova
, Andris Zarins, Juris Viksna
, Natalja Kurbatova
, Peteris Rucevskis, Sudeshna Guha Neogi, Mike Gostev, Teemu Perheentupa, Juha Knuuttila, Amy Barrett, Ilkka Lappalainen
, Johan Rung
, Karlis Podnieks, Ugis Sarkans
, Mark I. McCarthy
, Alvis Brazma
:
A System for Information Management in BioMedical Studies - SIMBioMS. Bioinform. 25(20): 2768-2769 (2009) - [j8]Helen E. Parkinson
, Misha Kapushesky, Nikolay Kolesnikov
, Gabriella Rustici
, Mohammadreza Shojatalab, Niran Abeygunawardena, Hugo Bérubé, Miroslaw Dylag, Ibrahim Emam
, Anna Farne, Ele Holloway, Margus Lukk
, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner
, Faisal Ibne Rezwan
, Anjan Sharma, Eleanor Williams
, Xiangqun Zheng Bradley
, Tomasz Adamusiak
, Marco Brandizi
, Tony Burdett
, Richard Coulson, Maria Krestyaninova
, Pavel Kurnosov, Eamonn Maguire, Sudeshna Guha Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans
, Alvis Brazma
:
ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res. 37(Database-Issue): 868-872 (2009) - 2007
- [j7]Juris Viksna
, Edgars Celms
, Martins Opmanis, Karlis Podnieks, Peteris Rucevskis, Andris Zarins, Amy Barrett, Sudeshna Guha Neogi, Maria Krestyaninova
, Mark I. McCarthy
, Alvis Brazma
, Ugis Sarkans
:
PASSIM - an open source software system for managing information in biomedical studies. BMC Bioinform. 8 (2007) - [j6]Helen E. Parkinson
, Misha Kapushesky, Mohammadreza Shojatalab, Niran Abeygunawardena, Richard Coulson, Anna Farne, Ele Holloway, Nikolay Kolesnykov
, P. Lilja, Margus Lukk
, Roby Mani, Tim F. Rayner
, Anjan Sharma, E. William, Ugis Sarkans
, Alvis Brazma
:
ArrayExpress - a public database of microarray experiments and gene expression profiles. Nucleic Acids Res. 35(Database-Issue): 747-750 (2007) - 2006
- [j5]Tim F. Rayner
, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush
, Gavin Sherlock
, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson
, Ugis Sarkans
, Catherine A. Ball, Alvis Brazma
:
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinform. 7: 489 (2006) - 2005
- [j4]Ugis Sarkans
, Helen E. Parkinson
, Gonzalo Garcia Lara, Ahmet Oezcimen, Anjan Sharma, Niran Abeygunawardena, Sergio Contrino
, Ele Holloway, Philippe Rocca-Serra, Gaurab Mukherjee, Mohammadreza Shojatalab, Misha Kapushesky, Susanna-Assunta Sansone, Anna Farne, Tim F. Rayner
, Alvis Brazma
:
The ArrayExpress gene expression database: a software engineering and implementation perspective. Bioinform. 21(8): 1495-1501 (2005) - [j3]Helen E. Parkinson
, Ugis Sarkans
, Mohammadreza Shojatalab, Niran Abeygunawardena, Sergio Contrino
, Richard Coulson, Anna Farne, Gonzalo Garcia Lara, Ele Holloway, Misha Kapushesky, P. Lilja, Gaurab Mukherjee, Ahmet Oezcimen, Tim F. Rayner
, Philippe Rocca-Serra, Anjan Sharma, Susanna-Assunta Sansone, Alvis Brazma
:
ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res. 33(Database-Issue): 553-555 (2005) - 2004
- [j2]Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane
, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente
, Ugis Sarkans, Jaak Vilo
, Alvis Brazma:
Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Res. 32(Web-Server-Issue): 465-470 (2004) - 2003
- [j1]Alvis Brazma
, Helen E. Parkinson
, Ugis Sarkans
, Mohammadreza Shojatalab, Jaak Vilo
, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone:
ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res. 31(1): 68-71 (2003)
1990 – 1999
- 1998
- [c4]Ugis Sarkans, Janis Barzdins:
Using Attribute Grammars for Description of Inductive Inference Search Space. ALT 1998: 400-408 - 1996
- [c3]Janis Barzdins, Ugis Sarkans:
Incorporating Hypothetical Knowledge into the Process of Inductive Synthesis. ALT 1996: 156-168 - 1995
- [c2]Mikhail Auguston, Subhankar Banerjee, Manish Mamnani, Ghulam Nabi, Juris Reinfelds, Ugis Sarkans, Ivan Strnad:
AUI - the Debugger and Assertion Checker for the Awk Programming Language. AADEBUG 1995: 309-310 - 1993
- [c1]Janis Barzdins, Guntis Barzdins, Kalvis Apsitis, Ugis Sarkans:
Towards Efficient Inductive Synthesis of Expressions from Input/Output Examples. ALT 1993: 59-72
Coauthor Index
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