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Yuichi Shiraishi
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2020 – today
- 2020
- [j13]Claudia Calabrese
, Natalie R. Davidson
, Deniz Demircioglu
, Nuno A. Fonseca
, Yao He, André Kahles, Kjong-Van Lehmann
, Fenglin Liu
, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban
, Liliana Greger, Siliang Li, Dongbing Liu
, Marc D. Perry
, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey
, Serap Erkek
, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen
, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström
, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak
, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson
, B. F. Francis Ouellette
, Kui Wu
, Huanming Yang
, Samirkumar B. Amin
, Aurélien Chateigner, Isidro Cortés-Ciriano
, Brian Craft, Milana Frenkel-Morgenstern
, Mary Goldman, Ekta Khurana, Fabien C. Lamaze
, Chang Li, Xiaobo Li
, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen
, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen
, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke
, Roland F. Schwarz
, Oliver Stegle
, Zemin Zhang, Alvis Brazma
, Gunnar Rätsch, Angela N. Brooks:
Genomic basis for RNA alterations in cancer. Nat. 578(7793): 129-136 (2020)
2010 – 2019
- 2019
- [j12]Takuya Moriyama, Seiya Imoto, Shuto Hayashi
, Yuichi Shiraishi, Satoru Miyano, Rui Yamaguchi:
A Bayesian model integration for mutation calling through data partitioning. Bioinform. 35(21): 4247-4254 (2019) - 2018
- [j11]Hiromu Ochiai
, Kenichi Chiba, Ai Okada
, Yuichi Shiraishi
:
hotsub: A batch job engine for cloud services with ETL framework. J. Open Source Softw. 3(31): 1069 (2018) - 2017
- [j10]Ai Okada, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Yuichi Shiraishi:
A framework for generating interactive reports for cancer genome analysis. J. Open Source Softw. 2(20): 457 (2017) - [j9]Heewon Park, Yuichi Shiraishi, Seiya Imoto, Satoru Miyano
:
A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity. IEEE ACM Trans. Comput. Biol. Bioinform. 14(4): 771-782 (2017) - 2016
- [c3]Takuya Moriyama, Yuichi Shiraishi, Kenichi Chiba, Rui Yamaguchi, Seiya Imoto, Satoru Miyano:
OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads. ISBRA 2016: 40-51 - 2015
- [j8]Kenichi Chiba, Yuichi Shiraishi, Yasunobu Nagata, Kenichi Yoshida, Seiya Imoto, Seishi Ogawa, Satoru Miyano
:
Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data. Bioinform. 31(1): 116-118 (2015) - [c2]Satoshi Ito
, Yuichi Shiraishi, Teppei Shimamura
, Kenichi Chiba, Satoru Miyano:
High performance computing of a fusion gene detection pipeline on the K computer. BIBM 2015: 1441-1447 - 2014
- [j7]Naoto Usuyama
, Yuichi Shiraishi, Yusuke Sato, Haruki Kume, Yukio Homma, Seishi Ogawa, Satoru Miyano
, Seiya Imoto:
HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations. Bioinform. 30(23): 3302-3309 (2014) - 2011
- [j6]Yuichi Shiraishi, Mariko Okada-Hatakeyama, Satoru Miyano
:
A rank-based statistical test for measuring synergistic effects between two gene sets. Bioinform. 27(17): 2399-2405 (2011) - [j5]Shin Suzuki, Tomohiro Yasuda, Yuichi Shiraishi, Satoru Miyano
, Masao Nagasaki
:
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information. BMC Bioinform. 12(S-14): S7 (2011) - [j4]Yuichi Shiraishi, Kenji Fukumizu
:
Statistical approaches to combining binary classifiers for multi-class classification. Neurocomputing 74(5): 680-688 (2011) - 2010
- [j3]Yuichi Shiraishi, Shuhei Kimura, Mariko Okada:
Inferring cluster-based networks from differently stimulated multiple time-course gene expression data. Bioinform. 26(8): 1073-1081 (2010) - [j2]Shuhei Kimura, Yuichi Shiraishi, Mariko Okada:
Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations. J. Bioinform. Comput. Biol. 8(4): 661-677 (2010)
2000 – 2009
- 2009
- [c1]Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama:
Inference of genetic networks using linear programming machines: Application of a priori knowledge. IJCNN 2009: 1617-1624 - 2008
- [j1]Yuichi Shiraishi:
Game theoretical analysis of the simple one-vs.-all classifier. Neurocomputing 71(13-15): 2747-2753 (2008)
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