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2020 – today
- 2022
[j14]Shuya Ikeda
, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, Toshiaki Katayama:
TogoID: an exploratory ID converter to bridge biological datasets. Bioinform. 38(17): 4194-4199 (2022)- [c3]Yuki Moriya, Fumi Nakamura, Kunio Kobayashi, Hitoshi Kawashima, Haoshuo Chen, Hiroyuki Tsuda:
Design of a Hybrid Wavelength Selective Crossconnect Utilizing a Silicon Optical Switch Array. OECC/PSC 2022: 1-4 - 2021
- [c2]Kentaro Go, Yuki Moriya, Yuichiro Kinoshita, Jiyi Li, Fumiyo Fukumoto:
Happy Text Entering: Promoting Subjective Well-Being Using an Input Method for Presenting Positive Words and Phrases. OZCHI 2021: 153-158
2010 – 2019
- 2019
- [j13]Toshiaki Katayama, Shuichi Kawashima, Shinobu Okamoto, Yuki Moriya, Hirokazu Chiba, Yuki Naito, Takatomo Fujisawa, Hiroshi Mori, Toshihisa Takagi:
TogoGenome/TogoStanza: modularized Semantic Web genome database. Database J. Biol. Databases Curation 2019: bay132 (2019) - [j12]Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Yoshinori Yamanouchi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Mio Iwasaki, Naoyuki Sugiyama, Satoshi Tanaka, Susumu Goto, Yasushi Ishihama:
The jPOST environment: an integrated proteomics data repository and database. Nucleic Acids Res. 47(Database-Issue): D1218-D1224 (2019) - [c1]Shuichi Kawashima, Toshiaki Katayama, Yuki Moriya, Shinobu Okamoto, Yasunori Yamamoto, Susumu Goto:
Integrated Growth Media Database by Standardizing Ingredient Information. SWAT4HCLS 2019: 165-166 - 2017
- [j11]Shujiro Okuda, Yu Watanabe, Yuki Moriya, Shin Kawano, Tadashi Yamamoto, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Naoyuki Sugiyama, Susumu Goto, Yasushi Ishihama:
jPOSTrepo: an international standard data repository for proteomes. Nucleic Acids Res. 45(Database-Issue): D1107-D1111 (2017) - 2016
- [j10]Yuki Moriya, Takuji Yamada, Shujiro Okuda, Zenichi Nakagawa, Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto:
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs. J. Chem. Inf. Model. 56(3): 510-516 (2016) - 2014
- [j9]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya, Toshiaki Tokimatsu, Susumu Goto:
Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach. Bioinform. 30(12): 165-174 (2014) - [j8]Masaaki Kotera, Yosuke Nishimura, Zenichi Nakagawa, Ai Muto, Yuki Moriya, Shinobu Okamoto, Shuichi Kawashima, Toshiaki Katayama, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto:
PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list. J. Bioinform. Comput. Biol. 12(6) (2014) - [j7]Yoshihiro Yamanishi, Masaaki Kotera, Yuki Moriya, Ryusuke Sawada, Minoru Kanehisa, Susumu Goto:
DINIES: drug-target interaction network inference engine based on supervised analysis. Nucleic Acids Res. 42(Webserver-Issue): 39-45 (2014) - 2013
- [j6]Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto:
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics. BMC Syst. Biol. 7(S-6): S2 (2013) - [j5]Akihiro Nakaya, Toshiaki Katayama, Masumi Itoh, Kazushi Hiranuka, Shuichi Kawashima, Yuki Moriya, Shujiro Okuda, Michihiro Tanaka, Toshiaki Tokimatsu, Yoshihiro Yamanishi, Akiyasu C. Yoshizawa, Minoru Kanehisa, Susumu Goto:
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters. Nucleic Acids Res. 41(Database-Issue): 353-357 (2013) - 2012
- [j4]Masaaki Kotera, Yoshihiro Yamanishi, Yuki Moriya, Minoru Kanehisa, Susumu Goto:
GENIES: gene network inference engine based on supervised analysis. Nucleic Acids Res. 40(Web-Server-Issue): 162-167 (2012) - 2010
- [j3]Yuki Moriya, Daichi Shigemizu, Masahiro Hattori, Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa:
PathPred: an enzyme-catalyzed metabolic pathway prediction server. Nucleic Acids Res. 38(Web-Server-Issue): 138-143 (2010)
2000 – 2009
- 2007
- [j2]Yuki Moriya, Masumi Itoh, Shujiro Okuda, Akiyasu C. Yoshizawa, Minoru Kanehisa:
KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35(Web-Server-Issue): 182-185 (2007) - 2006
- [j1]Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto:
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic Acids Res. 34(Web-Server-Issue): 459-462 (2006)
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