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2010 – 2019
- 2019
[j34]Jessica M. Conway, Alan S. Perelson, Jonathan Z. Li:
Predictions of time to HIV viral rebound following ART suspension that incorporate personal biomarkers. PLoS Comput. Biol. 15(7) (2019)- 2018
- [j33]Jessica M. Conway, Alan S. Perelson:
Early HIV Infection Predictions: Role of Viral Replication Errors. SIAM J. Appl. Math. 78(4): 1863-1890 (2018) - 2016
- [j32]Tanzy M. T. Love, Sung Yong Park, Elena E. Giorgi, Wendy J. Mack, Alan S. Perelson, Ha Youn Lee:
SPMM: estimating infection duration of multivariant HIV-1 infections. Bioinform. 32(9): 1308-1315 (2016) - [j31]Jessica M. Conway, Alan S. Perelson:
Residual Viremia in Treated HIV+ Individuals. PLoS Comput. Biol. 12(1) (2016) - [j30]Naveen K. Vaidya, Ruy M. Ribeiro
, Alan S. Perelson, Anil Kumar:
Modeling the Effects of Morphine on Simian Immunodeficiency Virus Dynamics. PLoS Comput. Biol. 12(9) (2016) - 2015
- [j29]Taina T. Immonen, Jessica M. Conway, Ethan O. Romero-Severson, Alan S. Perelson, Thomas Leitner:
Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population. PLoS Comput. Biol. 11(12) (2015) - 2014
- [j28]Laetitia Canini, Jessica M. Conway, Alan S. Perelson, Fabrice Carrat:
Impact of Different Oseltamivir Regimens on Treating Influenza A Virus Infection and Resistance Emergence: Insights from a Modelling Study. PLoS Comput. Biol. 10(4) (2014) - [j27]Stanca M. Ciupe, Ruy M. Ribeiro, Alan S. Perelson:
Antibody Responses during Hepatitis B Viral Infection. PLoS Comput. Biol. 10(7) (2014) - [j26]Jessica M. Conway, Alan S. Perelson:
A Hepatitis C Virus Infection Model with Time-Varying Drug Effectiveness: Solution and Analysis. PLoS Comput. Biol. 10(8) (2014) - [j25]Christian L. Althaus, Beda Joos, Alan S. Perelson, Huldrych F. Günthard:
Quantifying the Turnover of Transcriptional Subclasses of HIV-1-Infected Cells. PLoS Comput. Biol. 10(10) (2014) - [j24]Frederik Graw, Ashwin Balagopal, Abraham J. Kandathil, Stuart C. Ray, David L. Thomas, Ruy M. Ribeiro, Alan S. Perelson:
Inferring Viral Dynamics in Chronically HCV Infected Patients from the Spatial Distribution of Infected Hepatocytes. PLoS Comput. Biol. 10(11) (2014) - 2013
- [j23]Libin Rong, Jérémie Guedj, Harel Dahari, Daniel J. Coffield Jr., Micha Levi, Patrick Smith, Alan S. Perelson:
Analysis of Hepatitis C Virus Decline during Treatment with the Protease Inhibitor Danoprevir Using a Multiscale Model. PLoS Comput. Biol. 9(3) (2013) - 2012
- [j22]Kasia A. Pawelek, Giao T. Huynh, Michelle Quinlivan, Ann Cullinane, Libin Rong, Alan S. Perelson:
Modeling Within-Host Dynamics of Influenza Virus Infection Including Immune Responses. PLoS Comput. Biol. 8(6) (2012) - 2011
- [j21]John E. Pearson, Paul Krapivsky, Alan S. Perelson:
Stochastic Theory of Early Viral Infection: Continuous versus Burst Production of Virions. PLoS Comput. Biol. 7(2) (2011) - [j20]Amber M. Smith, Frederick R. Adler, Julie L. McAuley, Ryan N. Gutenkunst, Ruy M. Ribeiro, Jonathan A. McCullers, Alan S. Perelson:
Effect of 1918 PB1-F2 Expression on Influenza A Virus Infection Kinetics. PLoS Comput. Biol. 7(2) (2011) - [j19]Hongyu Miao, Xiaohua Xia, Alan S. Perelson, Hulin Wu:
On Identifiability of Nonlinear ODE Models and Applications in Viral Dynamics. SIAM Rev. 53(1): 3-39 (2011) - 2010
- [j18]Elena E. Giorgi, Bob Funkhouser, Gayathri Athreya, Alan S. Perelson, Bette T. Korber, Tanmoy Bhattacharya:
Estimating time since infection in early homogeneous HIV-1 samples using a poisson model. BMC Bioinform. 11: 532 (2010) - [j17]Rob J. De Boer, Ruy M. Ribeiro, Alan S. Perelson:
Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues. PLoS Comput. Biol. 6(9) (2010) - [j16]Naveen K. Vaidya, Libin Rong, Vincent C. Marconi, Daniel R. Kuritzkes, Steven G. Deeks, Alan S. Perelson:
Treatment-Mediated Alterations in HIV Fitness Preserve CD4+ T Cell Counts but Have Minimal Effects on Viral Load. PLoS Comput. Biol. 6(11) (2010)
2000 – 2009
- 2009
- [j15]Amy L. Bauer, Catherine Beauchemin, Alan S. Perelson:
Agent-based modeling of host-pathogen systems: The successes and challenges. Inf. Sci. 179(10): 1379-1389 (2009) - [j14]Libin Rong, Alan S. Perelson:
Modeling Latently Infected Cell Activation: Viral and Latent Reservoir Persistence, and Viral Blips in HIV-infected Patients on Potent Therapy. PLoS Comput. Biol. 5(10) (2009) - [j13]Timothy C. Reluga, Harel Dahari, Alan S. Perelson:
Analysis of Hepatitis C Virus Infection Models with Hepatocyte Homeostasis. SIAM J. Appl. Math. 69(4): 999-1023 (2009) - 2008
- [j12]Ha Youn Lee, Alan S. Perelson, Su-Chan Park, Thomas Leitner:
Dynamic Correlation between Intrahost HIV-1 Quasispecies Evolution and Disease Progression. PLoS Comput. Biol. 4(12) (2008) - 2007
- [j11]Libin Rong, Zhilan Feng, Alan S. Perelson:
Mathematical Analysis of Age-Structured HIV-1 Dynamics with Combination Antiretroviral Therapy. SIAM J. Appl. Math. 67(3): 731-756 (2007) - 2006
- [j10]Hwijin Kim, Alan S. Perelson:
Viral and Latent Reservoir Persistence in HIV-1-Infected Patients on Therapy. PLoS Comput. Biol. 2(10) (2006) - 2005
- [j9]Joseph T. Wu, Lawrence M. Wein, Alan S. Perelson:
Optimization of Influenza Vaccine Selection. Oper. Res. 53(3): 456-476 (2005) - [j8]John M. Murray, Alan S. Perelson:
Human Immunodeficiency Virus: Quasi-Species and Drug Resistance. Multiscale Model. Simul. 3(2): 300-311 (2005) - 2004
- [c6]Alan S. Perelson:
An Overview of Computational and Theoretical Immunology. ICARIS 2004: 439-441 - 2003
- [c5]Dennis L. Chao, Miles P. Davenport, Stephanie Forrest, Alan S. Perelson:
Stochastic Stage-structured Modeling of the Adaptive Immune System. CSB 2003: 124-131
1990 – 1999
- 1999
- [j7]Alan S. Perelson, Frederik W. Wiegel:
Some design principles for immune system recognition. Complex. 4(5): 29-37 (1999) - [j6]Alan S. Perelson, Patrick W. Nelson:
Mathematical Analysis of HIV-1 Dynamics in Vivo. SIAM Rev. 41(1): 3-44 (1999) - 1996
- [j5]Martijn A. Huynen, Alan S. Perelson, W. A. Vieira, Peter F. Stadler:
Base Pairing Probabilities in a Complete HIV-1 RNA. J. Comput. Biol. 3(2): 253-274 (1996) - 1995
- [c4]Ron R. Hightower, Stephanie Forrest, Alan S. Perelson:
The Evolution of Emergent Organization in Immune System Gene Libraries. ICGA 1995: 344-350 - 1994
- [c3]Stephanie Forrest, Alan S. Perelson, Lawrence Allen, Rajesh Cherukuri:
Self-nonself discrimination in a computer. IEEE Symposium on Security and Privacy 1994: 202-212 - 1993
- [j4]Robert E. Smith, Stephanie Forrest, Alan S. Perelson:
Searching for Diverse, Cooperative Populations with Genetic Algorithms. Evol. Comput. 1(2): 127-149 (1993) - [j3]Stephanie Forrest, Robert E. Smith, Brenda Javornik, Alan S. Perelson:
Using Genetic Algorithms to Explore Pattern Recognition in the Immune System. Evol. Comput. 1(3): 191-211 (1993) - 1992
- [c2]Robert E. Smith, Stephanie Forrest, Alan S. Perelson:
Population Diversity in an Immune System Model: Implications for Genetic Search. FOGA 1992: 153-165 - 1990
- [c1]Stephanie Forrest, Alan S. Perelson:
Genetic Algorithms and the Immune System. PPSN 1990: 320-325
1970 – 1979
- 1976
- [j2]Alan S. Perelson:
Review of "System Dynamics: A Unified Approach" by Dean C. Karnopp and Ronald C. Rosenberg. IEEE Trans. Syst. Man Cybern. 6(10): 724 (1976) - [j1]Alan S. Perelson:
Review of "Introduction to Bond Graphs and Their Applications" by J. U. Thoma. IEEE Trans. Syst. Man Cybern. 6(11): 797-798 (1976)
Coauthor Index
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