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Journal Articles
- 2022
[j38]Anna I. Blazejewska
, Thomas Witzel, Jesper L. R. Andersson, Lawrence L. Wald, Jonathan R. Polimeni:
Slice-direction geometric distortion evaluation and correction with reversed slice-select gradient acquisitions. NeuroImage 264: 119701 (2022)- 2021
- [j37]Fidel Alfaro-Almagro, Paul McCarthy, Soroosh Afyouni, Jesper L. R. Andersson, Matteo Bastiani, Karla L. Miller, Thomas E. Nichols, Stephen M. Smith:
Confound modelling in UK Biobank brain imaging. NeuroImage 224: 117002 (2021) - [j36]Jennifer Stine Elam, Matthew F. Glasser, Michael P. Harms, Stamatios N. Sotiropoulos, Jesper L. R. Andersson, Gregory C. Burgess, Sandra W. Curtiss, Robert Oostenveld, Linda J. Larson-Prior, Jan-Mathijs Schoffelen, Michael R. Hodge, Eileen A. Cler, Daniel M. Marcus, Deanna M. Barch, Essa Yacoub, Stephen M. Smith, Kâmil Ugurbil, David C. Van Essen:
The Human Connectome Project: A retrospective. NeuroImage 244: 118543 (2021) - 2020
- [j35]Frederik J. Lange, John Ashburner, Stephen M. Smith, Jesper L. R. Andersson:
A Symmetric Prior for the Regularisation of Elastic Deformations: Improved anatomical plausibility in nonlinear image registration. NeuroImage 219: 116962 (2020) - [j34]Elinor Thompson, Ali Reza Mohammadi-Nejad, Emma C. Robinson, Jesper L. R. Andersson, Saâd Jbabdi, Matthew F. Glasser, Matteo Bastiani, Stamatios N. Sotiropoulos:
Non-negative data-driven mapping of structural connections with application to the neonatal brain. NeuroImage 222: 117273 (2020) - 2019
- [j33]Matteo Bastiani, Michiel Cottaar, Sean P. Fitzgibbon, Sana Suri, Fidel Alfaro-Almagro, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson:
Automated quality control for within and between studies diffusion MRI data using a non-parametric framework for movement and distortion correction. NeuroImage 184: 801-812 (2019) - [j32]Matteo Bastiani, Jesper L. R. Andersson, Lucilio Cordero-Grande, Maria Murgasova, Jana Hutter, Anthony N. Price, Antonios Makropoulos, Sean P. Fitzgibbon, Emer J. Hughes, Daniel Rueckert, Suresh Victor, Mary A. Rutherford, A. David Edwards, Stephen M. Smith, Jacques-Donald Tournier, Joseph V. Hajnal, Saâd Jbabdi, Stamatios N. Sotiropoulos:
Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project. NeuroImage 185: 750-763 (2019) - [j31]Luke Baxter, Sean P. Fitzgibbon, Fiona Moultrie, Sezgi Goksan, Mark Jenkinson, Stephen M. Smith, Jesper L. R. Andersson, Eugene P. Duff, Rebeccah Slater:
Optimising neonatal fMRI data analysis: Design and validation of an extended dHCP preprocessing pipeline to characterise noxious-evoked brain activity in infants. NeuroImage 186: 286-300 (2019) - [j30]Joo-won Kim, Jesper L. R. Andersson, Alan C. Seifert, Peng Sun, Sheng-Kwei Song, Courtney Dula, Robert T. Naismith, Junqian Xu:
Incorporating non-linear alignment and multi-compartmental modeling for improved human optic nerve diffusion imaging. NeuroImage 196: 102-113 (2019) - 2018
- [j29]Fidel Alfaro-Almagro, Mark Jenkinson, Neal K. Bangerter, Jesper L. R. Andersson, Ludovica Griffanti, Gwenaëlle Douaud, Stamatios N. Sotiropoulos, Saâd Jbabdi, Moisés Hernández-Fernández, Emmanuel Vallée, Diego Vidaurre, Matthew A. Webster, Paul McCarthy, Christopher Rorden, Alessandro Daducci, Daniel C. Alexander, Hui Zhang, Iulius Dragonu, Paul M. Matthews, Karla L. Miller, Stephen M. Smith:
Image processing and Quality Control for the first 10, 000 brain imaging datasets from UK Biobank. NeuroImage 166: 400-424 (2018) - [j28]Jesper L. R. Andersson, Mark S. Graham, Ivana Drobnjak, Hui Zhang, Jon Campbell:
Susceptibility-induced distortion that varies due to motion: Correction in diffusion MR without acquiring additional data. NeuroImage 171: 277-295 (2018) - 2017
- [j27]Falk Eippert, Yazhuo Kong, Anderson M. Winkler, Jesper L. R. Andersson, Jürgen Finsterbusch, Christian Büchel, Jonathan C. W. Brooks, Irene Tracey:
Investigating resting-state functional connectivity in the cervical spinal cord at 3 T. NeuroImage 147: 589-601 (2017) - [j26]Jesper L. R. Andersson, Mark S. Graham, Ivana Drobnjak, Hui Zhang, Nicola Filippini, Matteo Bastiani:
Towards a comprehensive framework for movement and distortion correction of diffusion MR images: Within volume movement. NeuroImage 152: 450-466 (2017) - 2016
- [j25]Matthew F. Glasser, Timothy S. Coalson, Emma C. Robinson, Carl D. Hacker, John W. Harwell, Essa Yacoub, Kâmil Ugurbil, Jesper L. R. Andersson, Christian F. Beckmann, Mark Jenkinson, Stephen M. Smith, David C. Van Essen:
A multi-modal parcellation of human cerebral cortex. Nat. 536(7615): 171-178 (2016) - [j24]Jesper L. R. Andersson, Stamatios N. Sotiropoulos:
An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. NeuroImage 125: 1063-1078 (2016) - [j23]Stamatios N. Sotiropoulos, Moisés Hernández-Fernández, An T. Vu, Jesper L. R. Andersson, Steen Moeller, Essa Yacoub, Christophe Lenglet, Kâmil Ugurbil, Timothy Edward John Behrens, Saâd Jbabdi:
Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project. NeuroImage 134: 396-409 (2016) - [j22]Jesper L. R. Andersson, Mark S. Graham, Eniko Zsoldos, Stamatios N. Sotiropoulos:
Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images. NeuroImage 141: 556-572 (2016) - 2015
- [j21]Ivor J. A. Simpson, Manuel Jorge Cardoso, Marc Modat, David M. Cash, Mark W. Woolrich, Jesper L. R. Andersson, Julia A. Schnabel, Sébastien Ourselin:
Probabilistic non-linear registration with spatially adaptive regularisation. Medical Image Anal. 26(1): 203-216 (2015) - [j20]Peter V. Kochunov, Neda Jahanshad, Daniel S. Marcus, Anderson M. Winkler, Emma Sprooten, Thomas E. Nichols, Susan N. Wright, L. Elliot Hong, Binish Patel, Timothy Behrens, Saâd Jbabdi, Jesper L. R. Andersson, Christophe Lenglet, Essa Yacoub, Steen Moeller, Eddie Auerbach, Kâmil Ugurbil, Stamatios N. Sotiropoulos, Rachel M. Brouwer, Bennett A. Landman, Hervé Lemaître, Anouk den Braber, Marcel P. Zwiers, Stuart J. Ritchie, Kimm van Hulzen, Laura Almasy, Joanne E. Curran, Greig I. de Zubicaray, Ravi Duggirala, Peter T. Fox:
Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data. NeuroImage 111: 300-311 (2015) - [j19]Jesper L. R. Andersson, Stamatios N. Sotiropoulos:
Non-parametric representation and prediction of single- and multi-shell diffusion-weighted MRI data using Gaussian processes. NeuroImage 122: 166-176 (2015) - [j18]An T. Vu, Edward J. Auerbach, Christophe Lenglet, Steen Moeller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Essa Yacoub, Kâmil Ugurbil:
High resolution whole brain diffusion imaging at 7 T for the Human Connectome Project. NeuroImage 122: 318-331 (2015) - 2014
- [j17]Emma C. Robinson, Saâd Jbabdi, Matthew F. Glasser, Jesper L. R. Andersson, Gregory C. Burgess, Michael P. Harms, Stephen M. Smith, David C. Van Essen, Mark Jenkinson:
MSM: A new flexible framework for Multimodal Surface Matching. NeuroImage 100: 414-426 (2014) - 2013
- [j16]Marius de Groot, Meike W. Vernooij, Stefan Klein, Mohammad Arfan Ikram, Frans M. Vos, Stephen M. Smith, Wiro J. Niessen, Jesper L. R. Andersson:
Improving alignment in Tract-based spatial statistics: Evaluation and optimization of image registration. NeuroImage 76: 400-411 (2013) - [j15]Kâmil Ugurbil, Junqian Xu, Edward J. Auerbach, Steen Moeller, An T. Vu, Julio Martin Duarte-Carvajalino, Christophe Lenglet, Xiaoping Wu, Sebastian Schmitter, Pierre-François van de Moortele, John P. Strupp, Guillermo Sapiro, Federico De Martino, Dingxin Wang, Noam Harel, Michael Garwood, Liyong Chen, David A. Feinberg, Stephen M. Smith, Karla L. Miller, Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Timothy Edward John Behrens, Matthew F. Glasser, David C. Van Essen, Essa Yacoub:
Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project. NeuroImage 80: 80-104 (2013) - [j14]Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson:
The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage 80: 105-124 (2013) - [j13]Stamatios N. Sotiropoulos, Saâd Jbabdi, Junqian Xu, Jesper L. R. Andersson, Steen Moeller, Edward J. Auerbach, Matthew F. Glasser, Moisés Hernández, Guillermo Sapiro, Mark Jenkinson, David A. Feinberg, Essa Yacoub, Christophe Lenglet, David C. Van Essen, Kâmil Ugurbil, Timothy Edward John Behrens:
Advances in diffusion MRI acquisition and processing in the Human Connectome Project. NeuroImage 80: 125-143 (2013) - [j12]Stephen M. Smith, Christian F. Beckmann, Jesper L. R. Andersson, Edward J. Auerbach, Janine D. Bijsterbosch, Gwenaëlle Douaud, Eugene P. Duff, David A. Feinberg, Ludovica Griffanti, Michael P. Harms, Michael Kelly, Timothy O. Laumann, Karla L. Miller, Steen Moeller, Steven E. Petersen, Jonathan D. Power, Gholamreza Salimi Khorshidi, Abraham Z. Snyder, An T. Vu, Mark William Woolrich, Junqian Xu, Essa Yacoub, Kâmil Ugurbil, David C. Van Essen, Matthew F. Glasser:
Resting-state fMRI in the Human Connectome Project. NeuroImage 80: 144-168 (2013) - [j11]Ivor J. A. Simpson, Mark William Woolrich, Jesper L. R. Andersson, Adrian R. Groves, Julia A. Schnabel:
Ensemble Learning Incorporating Uncertain Registration. IEEE Trans. Medical Imaging 32(4): 748-756 (2013) - [j10]Stamatios N. Sotiropoulos, Saâd Jbabdi, Jesper L. R. Andersson, Mark William Woolrich, Kâmil Ugurbil, Timothy Edward John Behrens:
RubiX: Combining Spatial Resolutions for Bayesian Inference of Crossing Fibers in Diffusion MRI. IEEE Trans. Medical Imaging 32(6): 969-982 (2013) - 2012
- [j9]Ivor J. A. Simpson, Julia A. Schnabel, Adrian R. Groves, Jesper L. R. Andersson, Mark William Woolrich:
Probabilistic inference of regularisation in non-rigid registration. NeuroImage 59(3): 2438-2451 (2012) - [j8]Yazhuo Kong, Mark Jenkinson, Jesper L. R. Andersson, Irene Tracey, Jonathan C. W. Brooks:
Assessment of physiological noise modelling methods for functional imaging of the spinal cord. NeuroImage 60(2): 1538-1549 (2012) - 2011
- [j7]Courtney A. Bishop, Mark Jenkinson, Jesper L. R. Andersson, Jérôme Declerck, Dorit Merhof:
Novel Fast Marching for Automated Segmentation of the Hippocampus (FMASH): Method and validation on clinical data. NeuroImage 55(3): 1009-1019 (2011) - 2009
- [j6]Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey:
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46(3): 786-802 (2009) - 2008
- [j5]Jesper L. R. Andersson:
Maximum a posteriori estimation of diffusion tensor parameters using a Rician noise model: Why, how and but. NeuroImage 42(4): 1340-1356 (2008) - 2007
- [j4]Saâd Jbabdi, Mark W. Woolrich, Jesper L. R. Andersson, T. E. J. Behrens:
A Bayesian framework for global tractography. NeuroImage 37(1): 116-129 (2007) - 2005
- [j3]Thomas E. Nichols, Matthew Brett, Jesper L. R. Andersson, Tor D. Wager, Jean-Baptiste Poline:
Valid conjunction inference with the minimum statistic. NeuroImage 25(3): 653-660 (2005) - 2003
- [j2]Jesper L. R. Andersson, Stefan Skare, John Ashburner:
How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. NeuroImage 20(2): 870-888 (2003) - 2002
- [j1]Jesper L. R. Andersson, Stefan Skare:
A Model-Based Method for Retrospective Correction of Geometric Distortions in Diffusion-Weighted EPI. NeuroImage 16(1): 177-199 (2002)
Conference and Workshop Papers
- 2020
- [c3]Frederik J. Lange, Stephen M. Smith, Mads F. Bertelsen, Alexandre A. Khrapitchev, Paul R. Manger, Rogier B. Mars, Jesper L. R. Andersson:
Multimodal MRI Template Creation in the Ring-Tailed Lemur and Rhesus Macaque. WBIR 2020: 141-150 - 2013
- [c2]Emma C. Robinson, Saâd Jbabdi, Jesper L. R. Andersson, Stephen M. Smith, Matthew F. Glasser, David C. Van Essen, Gregory C. Burgess, Michael P. Harms, Deanna M. Barch, Mark Jenkinson:
Multimodal Surface Matching: Fast and Generalisable Cortical Registration Using Discrete Optimisation. IPMI 2013: 475-486 - 2012
- [c1]Ivor J. A. Simpson, Mark William Woolrich, Jesper L. R. Andersson, Adrian R. Groves, Julia A. Schnabel:
A probabilistic non-rigid registration framework using local noise estimates. ISBI 2012: 688-691
Coauthor Index
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