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Aaron Golden
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Journal Articles
- 2020
- [j11]Kevin R. Shieh, Christina Kratschmer, Keith E. Maier, John M. Greally, Matthew Levy, Aaron Golden:
AptCompare: optimized de novo motif discovery of RNA aptamers via HTS-SELEX. Bioinform. 36(9): 2905-2906 (2020) - 2015
- [j10]David B. Rhee, Matthew McKnight Croken, Kevin R. Shieh, Julie M. Sullivan
, Gos Micklem
, Kami Kim
, Aaron Golden:
toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research. Database J. Biol. Databases Curation 2015 (2015) - [j9]Pilib Ó Broin
, Terry J. Smith
, Aaron Golden:
Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach. BMC Bioinform. 16: 22:1-22:12 (2015) - 2013
- [j8]Paul Geeleher, Lori Hartnett, Laurance J. Egan, Aaron Golden, Raja Affendi Raja Ali, Cathal Seoighe:
Gene-set analysis is severely biased when applied to genome-wide methylation data. Bioinform. 29(15): 1851-1857 (2013) - 2009
- [j7]Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden:
BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server. Bioinform. 25(11): 1438-1439 (2009) - [j6]James Mc Donald, Aaron Golden, S. Gerard Jennings:
Opendda: a Novel High-Performance Computational Framework for the Discrete Dipole Approximation. Int. J. High Perform. Comput. Appl. 23(1): 42-61 (2009) - 2007
- [j5]Ronan M. T. Fleming, Aaron Golden, Heinz-Peter Nasheuer:
Thermodynamically constrained steady state solution space of the E. coli metabolic network. BMC Syst. Biol. 1(S-1): P15 (2007) - 2006
- [j4]Shaun Mahony
, Panayiotis V. Benos
, Terry J. Smith
, Aaron Golden:
Self-organizing neural networks to support the discovery of DNA-binding motifs. Neural Networks 19(6-7): 950-962 (2006) - 2005
- [j3]Shaun Mahony
, David Hendrix, Terry J. Smith
, Aaron Golden:
Self-Organizing Maps of Position Weight Matrices for Motif Discovery in Biological Sequences. Artif. Intell. Rev. 24(3-4): 397-413 (2005) - [j2]Shaun Mahony
, David Hendrix, Aaron Golden, Terry J. Smith
, Daniel S. Rokhsar
:
Transcription factor binding site identification using the self-organizing map. Bioinform. 21(9): 1807-1814 (2005) - 2004
- [j1]Shaun Mahony
, James O. McInerney, Terry J. Smith
, Aaron Golden:
Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models. BMC Bioinform. 5: 23 (2004)
Conference and Workshop Papers
- 2016
- [c7]David Rhee, Kevin R. Shieh, Julie M. Sullivan, Gos Micklem, Kami Kim, Aaron Golden:
Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies. ICSC 2016: 314-320 - 2014
- [c6]Kevin R. Shieh, Pilib Ó Broin, David Rhee, Matthew Levy, Aaron Golden:
Using SAGA and the Open Science Grid to Search for Aptamers. XSEDE 2014: 27:1-27:4 - 2013
- [c5]David Rhee, Joseph Hargitai, R. Brent Calder, Pilib Ó Broin, Kevin R. Shieh, Aaron Golden:
'Spring through the gateway': deploying genomic workflows with XSEDE. XSEDE 2013: 30:1-30:4 - 2012
- [c4]Aaron Golden, Andrew S. McLellan, Robert A. Dubin, Qiang Jing, Pilib Ó Broin, David Moskowitz, Zhengdong Zhang, Masako Suzuki, Joseph Hargitai, R. Brent Calder, John M. Greally:
The Einstein Genome Gateway using WASP - A High Throughput Multi-Layered Life Sciences Portal for XSEDE. HealthGrid 2012: 182-191 - 2006
- [c3]Nigel McCoy, Shaun Mahony
, Aaron Golden:
Gene Prediction in Metagenomic Libraries Using the Self Organising Map and High Performance Computing Techniques. GCCB 2006: 99-109 - 2005
- [c2]Shaun Mahony
, Aaron Golden, Terry J. Smith
, Panayiotis V. Benos
:
Improved detection of DNA motifs using a self-organized clustering of familial binding profiles. ISMB (Supplement of Bioinformatics) 2005: 283-291 - 2003
- [c1]Shaun Mahony, Terry J. Smith
, James O. McInerney, Aaron Golden:
A New Approach to Gene Prediction Using the Self-Organizing Map. CSB 2003: 444-445
Coauthor Index
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