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2020 – today
- 2020
[j14]Irene Stevens
, Abdul Kadir Mukarram, Matthias Hörtenhuber, Terrence F. Meehan, Johan Rung, Carsten O. Daub:
Ten simple rules for annotating sequencing experiments. PLoS Comput. Biol. 16(10) (2020)
2010 – 2019
- 2018
- [j13]J. Kenneth Baillie, Andrew Bretherick, Christopher S. Haley, Sara Clohisey, Alan Gray, Lucile P. A. Neyton, Jeffrey Barrett, Eli A. Stahl, Albert Tenesa, Robin Andersson, J. Ben Brown, Geoffrey J. Faulkner, Marina Lizio, Ulf Schaefer, Carsten O. Daub, Masayoshi Itoh, Naoto Kondo, Timo Lassmann, Jun Kawai, IIBDGC Consortium, Damian Mole, Vladimir B. Bajic, Peter Heutink, Michael Rehli, Hideya Kawaji, Albin Sandelin, Harukazu Suzuki, Jack Satsangi, Christine A. Wells, Nir Hacohen, Tom C. Freeman, Yoshihide Hayashizaki, Piero Carninci, Alistair R. R. Forrest, David A. Hume:
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease. PLoS Comput. Biol. 14(3) (2018) - 2015
- [j12]Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Levon M. Khachigian, Mariko Okada-Hatakeyama, Colin A. M. Semple:
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j11]Timo Lassmann, Akira Hasegawa, Carsten O. Daub, Piero Carninci, Yoshihide Hayashizaki:
MOIRAI: A Compact Workflow System for CAGE Analysis. BMC Bioinform. 15: 144 (2014) - 2011
- [j10]Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub:
SAMStat: monitoring biases in next generation sequencing data. Bioinform. 27(1): 130-131 (2011) - [j9]Margherita Francescatto, Luba Pardo, Patrizia Rizzu, Morana Vitezic, Javier Simón-Sánchez, Hazuki Takahashi, Carsten O. Daub, Piero Carninci, Peter Heutink:
Profiling transcription initiation in human aged brain using deep-CAGE. BMC Bioinform. 12(S-11): A8 (2011) - [j8]Hideya Kawaji, Jessica Severin, Marina Lizio, Alistair R. R. Forrest, Erik van Nimwegen, Michael Rehli, Kate Schroder, Katharine M. Irvine, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten O. Daub:
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation. Nucleic Acids Res. 39(Database-Issue): 856-860 (2011) - [c2]Yasumasa Kimura, Michiel J. L. de Hoon, Shintaro Aoki, Yuri Ishizu, Carsten O. Daub, Alexander Lezhava, Erik Arner, Yoshihide Hayashizaki, Yuki Kawai, Yasushi Kogo:
Optimization of turn-back primers in isothermal amplification. BIBM Workshops 2011: 909-911 - 2010
- [j7]Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub:
NGSView: an extensible open source editor for next-generation sequencing data. Bioinform. 26(1): 125-126 (2010)
2000 – 2009
- 2009
- [j6]Takehiro Hashimoto, Michiel J. L. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner:
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. Bioinform. 25(19): 2613-2614 (2009) - [j5]Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub:
TagDust - a program to eliminate artifacts from next generation sequencing data. Bioinform. 25(21): 2839-2840 (2009) - [j4]Hideya Kawaji, Yoshihide Hayashizaki, Carsten O. Daub:
SDRF2GRAPH - a visualization tool of a spreadsheet-based description of experimental processes. BMC Bioinform. 10 (2009) - 2008
- [j3]Carsten O. Daub, Erik L. L. Sonnhammer:
Employing conservation of co-expression to improve functional inference. BMC Syst. Biol. 2: 81 (2008) - 2005
- [b1]Carsten O. Daub:
Analysis of integrated transcriptomics and metabolomics data : a systems biology approach. University of Potsdam, Germany, 2005 - 2004
- [j2]Carsten O. Daub, Ralf Steuer, Joachim Selbig, Sebastian Kloska:
Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data. BMC Bioinform. 5: 118 (2004) - 2003
- [j1]Carsten O. Daub, Sebastian Kloska, Joachim Selbig:
MetaGeneAlyse: analysis of integrated transcriptional and metabolite data. Bioinform. 19(17): 2332-2333 (2003) - 2002
- [c1]Ralph E. Steuer, Jürgen Kurths, Carsten O. Daub, Janko Weise, Joachim Selbig:
The mutual information: Detecting and evaluating dependencies between variables. ECCB 2002: 231-240
Coauthor Index
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