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ORCIDJoaquín Tárraga
Person information
- affiliation: University of Castilla-La Mancha (UCLM), Department of Computing Systems, Spain
- affiliation: Research Center Príncipe Felipe (RCPF), Genomics Institute, Spain
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2020 – today
- 2025
[i3]Joaquin Tarraga-Moreno, Jesús Escudero-Sahuquillo, Pedro Javier García, Francisco J. Quiles:
Understanding intra-node communication in HPC systems and Datacenters. CoRR abs/2502.20965 (2025)- [i2]Joaquin Tarraga-Moreno, Daniel Barley, Francisco J. Andujar-Munoz, Jesús Escudero-Sahuquillo, Holger Fröning, Pedro Javier García, Francisco J. Quiles, José Duato:
Scalable and Efficient Intra- and Inter-node Interconnection Networks for Post-Exascale Supercomputers and Data centers. CoRR abs/2511.04677 (2025)
2010 – 2019
- 2018
- [j22]Héctor Martínez
, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí:
A framework for genomic sequencing on clusters of multicore and manycore processors. Int. J. High Perform. Comput. Appl. 32(3): 393-406 (2018) - 2017
- [j21]Ricardo Olanda, Mariano Pérez, Juan M. Orduña, Joaquín Tárraga, Joaquín Dopazo:
A new parallel pipeline for DNA methylation analysis of long reads datasets. BMC Bioinform. 18(1): 161:1-161:6 (2017) - [j20]José M. Juanes, Asunción Gallego, Joaquín Tárraga, Felipe Javier Chaves, Pablo Marín-García, Ignacio Medina, Vicente Arnau, Joaquín Dopazo:
VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy. BMC Bioinform. 18(1): 421:1-421:5 (2017) - [j19]Javier López, Jacobo Coll, Matthias Haimel, Swaathi Kandasamy, Joaquín Tárraga, Pedro Furió-Tarí, Wasim Bari, Marta Bleda, Antonio Rueda, Stefan Gräf, Augusto Rendon, Joaquín Dopazo, Ignacio Medina:
HGVA: the Human Genome Variation Archive. Nucleic Acids Res. 45(Webserver-Issue): W189-W194 (2017) - 2016
- [j18]Joaquín Tárraga, Asunción Gallego, Vicente Arnau, Ignacio Medina, Joaquín Dopazo:
HPG pore: an efficient and scalable framework for nanopore sequencing data. BMC Bioinform. 17: 107 (2016) - 2015
- [j17]Joaquín Tárraga, Mariano Pérez, Juan M. Orduña, José Duato, Ignacio Medina, Joaquín Dopazo:
A parallel and sensitive software tool for methylation analysis on multicore platforms. Bioinform. 31(19): 3130-3138 (2015) - [j16]Roberto Alonso, Francisco Salavert, Francisco García-García, José Carbonell-Caballero, Marta Bleda, Luz Garcia-Alonso, Alba Sanchis-Juan, Daniel Perez-Gil, Pablo Marín-García, Rubén Sánchez, Cankut Çubuk, Marta R. Hidalgo, Alicia Amadoz, Rosa D. Hernansaiz-Ballesteros, Alejandro Alemán, Joaquín Tárraga, David Montaner, Ignacio Medina, Joaquín Dopazo:
Babelomics 5.0: functional interpretation for new generations of genomic data. Nucleic Acids Res. 43(Webserver-Issue): W117-W121 (2015) - [j15]Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí:
Concurrent and Accurate Short Read Mapping on Multicore Processors. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 995-1007 (2015) - [c2]Héctor Martínez, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí:
Scalable RNA Sequencing on Clusters of Multicore Processors. TrustCom/BigDataSE/ISPA (3) 2015: 190-195 - 2014
- [j14]Joaquín Tárraga, Vicente Arnau, Héctor Martínez, Raul Moreno, Diego Cazorla, José Salavert Torres, Ignacio Blanquer Espert, Joaquín Dopazo, Ignacio Medina:
Acceleration of short and long DNA read mapping without loss of accuracy using suffix array. Bioinform. 30(23): 3396-3398 (2014) - 2013
- [c1]Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí:
A dynamic pipeline for RNA sequencing on multicore processors. EuroMPI 2013: 235-240 - [i1]Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí:
Concurrent and Accurate RNA Sequencing on Multicore Platforms. CoRR abs/1304.0681 (2013) - 2012
- [j13]Marta Bleda, Joaquín Tárraga, Alejandro de María, Francisco Salavert, Luz Garcia-Alonso, Matilde Celma, Ainoha Martín, Joaquín Dopazo, Ignacio Medina:
CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources. Nucleic Acids Res. 40(Web-Server-Issue): 609-614 (2012) - [j12]José Salavert Torres, Ignacio Blanquer Espert, Andrés Tomás Dominguez, Vicente Hernández, Ignacio Medina, Joaquín Tárraga, Joaquín Dopazo:
Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1245-1256 (2012) - 2011
- [j11]Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo:
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Res. 39(Web-Server-Issue): 470-474 (2011) - 2010
- [j10]Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo:
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 38(Web-Server-Issue): 210-213 (2010)
2000 – 2009
- 2009
- [j9]Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo:
Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucleic Acids Res. 37(Web-Server-Issue): 340-344 (2009) - 2008
- [j8]Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo:
GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Res. 36(Web-Server-Issue): 308-314 (2008) - [j7]Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo:
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Res. 36(Web-Server-Issue): 341-346 (2008) - 2007
- [j6]Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo:
Prophet, a web-based tool for class prediction using microarray data. Bioinform. 23(3): 390-391 (2007) - [j5]Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo:
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Res. 35(Web-Server-Issue): 38-42 (2007) - [j4]Lucía Conde, David Montaner, Jordi Burguet-Castell, Joaquín Tárraga, Ignacio Medina, Fátima Al-Shahrour, Joaquín Dopazo:
ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling. Nucleic Acids Res. 35(Web-Server-Issue): 81-85 (2007) - [j3]Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo:
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. Nucleic Acids Res. 35(Web-Server-Issue): 91-96 (2007) - 2006
- [j2]Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo:
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Res. 34(Web-Server-Issue): 472-476 (2006) - [j1]David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet-Castell, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo:
Next station in microarray data analysis: GEPAS. Nucleic Acids Res. 34(Web-Server-Issue): 486-491 (2006)
Coauthor Index
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