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ORCIDMasakazu Sekijima
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2020 – today
- 2022
[j8]Kazuki Z. Yamamoto
, Nobuaki Yasuo, Masakazu Sekijima:
Screening for Inhibitors of Main Protease in SARS-CoV-2: In Silico and In Vitro Approach Avoiding Peptidyl Secondary Amides. J. Chem. Inf. Model. 62(2): 350-358 (2022)- [c12]Mami Ozawa, Nobuaki Yasuo, Masakazu Sekijima:
An Improved Model for Predicting Compound Retrosynthesizability Using Machine Learning. BIBE 2022: 210-216 - 2021
- [j7]Daiki Erikawa, Nobuaki Yasuo, Masakazu Sekijima:
MERMAID: an open source automated hit-to-lead method based on deep reinforcement learning. J. Cheminformatics 13(1): 94 (2021) - 2020
- [j6]Sherlyn Jemimah, Masakazu Sekijima, M. Michael Gromiha:
ProAffiMuSeq: sequence-based method to predict the binding free energy change of protein-protein complexes upon mutation using functional classification. Bioinform. 36(6): 1725-1730 (2020)
2010 – 2019
- 2019
- [j5]Nobuaki Yasuo, Masakazu Sekijima:
Improved Method of Structure-Based Virtual Screening via Interaction-Energy-Based Learning. J. Chem. Inf. Model. 59(3): 1050-1061 (2019) - 2018
- [j4]Naoki Arai, Shunsuke Yoshikawa, Nobuaki Yasuo, Ryunosuke Yoshino, Masakazu Sekijima:
Compound property enhancement by virtual compound synthesis. J. Bioinform. Comput. Biol. 16(3): 1840016:1-1840016:13 (2018) - [c11]Nobuaki Yasuo, Yusuke Nakashima, Masakazu Sekijima:
CoDe-DTI: Collaborative Deep Learning-based Drug-Target Interaction Prediction. BIBM 2018: 792-797 - [i1]Seán I. O'Donoghue, Masakazu Sekijima, Marc Baaden:
Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19). NII Shonan Meet. Rep. 2018 (2018) - 2016
- [j3]Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob B. Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan F. DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman, Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau, Nagarajan Raju, Sonia P. Chothani, C. Ramakrishnan, Masakazu Sekijima, M. Michael Gromiha, Paddy J. Slator, Nigel J. Burroughs, Przemyslaw Szalaj, Zhonghui Tang, Paul J. Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski, Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens, Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic:
Highlights from the 11th ISCB Student Council Symposium 2015: Dublin, Ireland. 10 July 2015. BMC Bioinform. 17(S-3) (2016) - 2015
- [c10]Takuro Udagawa, Masakazu Sekijima:
GPU Accelerated Molecular Dynamics with Method of Heterogeneous Load Balancing. IPDPS Workshops 2015: 1008-1013 - 2012
- [j2]Takahiro Shinozaki, Toshinao Iwaki, Shiqiao Du, Masakazu Sekijima, Sadaoki Furui:
Distance-based Factor Graph Linearization and Sampled Max-sum Algorithm for Efficient 3D Potential Decoding of Macromolecules. Inf. Media Technol. 7(1): 181-191 (2012) - 2011
- [c9]Takuro Udagawa, Masakazu Sekijima:
The Power Efficiency of GPUs in Multi Nodes Environment with Molecular Dynamics. ICPP Workshops 2011: 399-405
2000 – 2009
- 2008
- [j1]Masakazu Sekijima, Junta Doi, Shinya Honda, Tamotsu Noguchi, Shigenori Shimizu, Yutaka Akiyama:
Free Energy Landscape Analysis System Based on Parallel Molecular Dynamics Simulation. Inf. Media Technol. 3(1): 201-210 (2008) - [c8]Junichi Ikeda, Kazuki Ohno, Sayaka Akioka, Masaya Orita, Yoichi Muraoka, Tamotsu Noguchi, Masakazu Sekijima:
Large-Scale Computing for Protein-Protein Binding Free Energy Calculation. PDPTA 2008: 771-775 - 2007
- [c7]Junta Doi, Kentaro Shimizu, Masakazu Sekijima:
High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection. ICNSC 2007: 392-397 - [c6]Masakazu Sekijima, Junta Doi, Tamotsu Noguchi, Yutaka Akiyama, Shigenori Shimizu:
Optimization and evaluation of parallel molecular dynamics simulation on blue gene/L. Parallel and Distributed Computing and Networks 2007: 242-247 - [c5]Sachi Kimura, Masakazu Sekijima, Masami Takata, Tamotsu Noguchi, Kazuki Joe:
Development of Molecular Dynamics Simulation Based Flexible Docking System. PDPTA 2007: 739-745 - [c4]Manami Sasaki, Masakazu Sekijima, Masami Takata, Kazuki Joe:
Optimization of Molecular Dynamics Simulation on Cell Processor. PDPTA 2007: 780-786 - [c3]Masami Nakazawa, Masami Takata, Kiyonobu Yokota, Tamotsu Noguchi, Masakazu Sekijima, Kazuki Joe:
Development of an SVM based Prediction System for Metalbinding Sites in Protein. PDPTA 2007: 972-978 - 2003
- [c2]Masakazu Sekijima, Chie Motono, Satoshi Yamasaki, Kiyotoshi Kaneko, Yutaka Akiyama:
Molecular Dynamics Simulation of Prion Protein by Large Scale Cluster Computing. ISHPC 2003: 476-485 - 2002
- [c1]Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu:
Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment. IASTED PDCS 2002: 375-380
Coauthor Index
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