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2020 – today
- 2025
[c89]Lucas David, Hélio Pedrini, Zanoni Dias:
Learning Weakly Supervised Semantic Segmentation Through Cross-Supervision and Contrasting of Pixel-Level Pseudo-Labels. VISIGRAPP (3): VISAPP 2025: 154-165- [i4]Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
Scaling Up ESM2 Architectures for Long Protein Sequences Analysis: Long and Quantized Approaches. CoRR abs/2501.07747 (2025) - 2024
- [j61]Andre Rodrigues Oliveira
, Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Ulisses Dias, Zanoni Dias:
Rearrangement Distance Problems: An updated survey. ACM Comput. Surv. 56(8): 206:1-206:27 (2024) - [j60]Gabriel Siqueira, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Zanoni Dias:
Assignment of orthologous genes in unbalanced genomes using cycle packing of adjacency graphs. J. Heuristics 30(5): 269-289 (2024) - [j59]Lucas Oliveira David, Hélio Pedrini, Zanoni Dias:
P-NOC: Adversarial training of CAM generating networks for robust weakly supervised semantic segmentation priors. J. Vis. Commun. Image Represent. 102: 104187 (2024) - [c88]Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
Integrating Transformers and AutoML for Protein Function Prediction. EMBC 2024: 1-5 - [c87]Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Maximum Alternating Balanced Cycle Decomposition and Applications in Sorting by Intergenic Operations Problems. RECOMB-CG 2024: 153-172 - 2023
- [j58]Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
TEMPROT: protein function annotation using transformers embeddings and homology search. BMC Bioinform. 24(1): 242 (2023) - [j57]Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias:
Rearrangement distance with reversals, indels, and moves in intergenic regions on signed and unsigned permutations. J. Bioinform. Comput. Biol. 21(2): 2350009:1-2350009:30 (2023) - [j56]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. J. Comput. Biol. 30(8): 861-876 (2023) - [j55]Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Approximation algorithms for sorting by k-cuts on signed permutations. J. Comb. Optim. 45(1): 6 (2023) - [j54]Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Zanoni Dias:
Signed rearrangement distances considering repeated genes, intergenic regions, and indels. J. Comb. Optim. 46(2): 16 (2023) - [j53]Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Reversal and Indel Distance With Intergenic Region Information. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1628-1640 (2023) - [j52]Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Genome Rearrangement Distance With a Flexible Intergenic Regions Aspect. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1641-1653 (2023) - [c86]Ana Paula dos Santos Dantas, Gabriel Bianchin de Oliveira, Hélio Pedrini, Cid C. de Souza, Zanoni Dias:
The Multi-attribute Fairer Cover Problem. BRACIS (1) 2023: 163-177 - [c85]Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Zanoni Dias:
Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions. ISBRA 2023: 241-254 - [c84]Lucas David, Luis Liborio, Guilherme Paiva, Marianna Severo, Eduardo Valle, Hélio Pedrini, Zanoni Dias:
Adversarial Feature Hallucination in a Supervised Contrastive Space for Few-Shot Learning of Provenance in Paintings. LA-CCI 2023: 1-6 - [c83]Rebeca Padovani Ederli, Didier A. Vega-Oliveros, Aurea Soriano-Vargas, Anderson Rocha, Zanoni Dias:
Sleep-Wake Classification using Recurrence Plots from Smartwatch Accelerometer Data. LA-CCI 2023: 1-6 - [c82]Ana Paula dos Santos Dantas, Gabriel Bianchin de Oliveira, Daiane Mendes de Oliveira, Hélio Pedrini, Cid C. de Souza, Zanoni Dias:
Algorithmic Fairness Applied to the Multi-Label Classification Problem. VISIGRAPP (5: VISAPP) 2023: 737-744 - [c81]Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Block Interchange and Reversal Distance on Unbalanced Genomes. BSB 2023: 1-13 - [i3]Lucas David, Hélio Pedrini, Zanoni Dias:
P-NOC: Adversarial CAM Generation for Weakly Supervised Semantic Segmentation. CoRR abs/2305.12522 (2023) - 2022
- [j51]Ana Paula dos Santos Dantas, Cid C. de Souza, Zanoni Dias:
A heuristic for the convex recoloring problem in graphs. Int. Trans. Oper. Res. 29(3): 1454-1478 (2022) - [j50]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Labeled Cycle Graph for Transposition and Indel Distance. J. Comput. Biol. 29(3): 243-256 (2022) - [j49]Javier Alvaro Vargas Muñoz, Zanoni Dias, Ricardo da Silva Torres:
A genetic programming approach for searching on nearest neighbors graphs. Multim. Tools Appl. 81(16): 23449-23472 (2022) - [c80]Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
Protein Molecular Function Annotation Based on Transformer Embeddings. BRACIS (2) 2022: 210-220 - [c79]Lucas David, Hélio Pedrini, Zanoni Dias:
MinMax-CAM: Increasing Precision of Explaining Maps by Contrasting Gradient Signals and Regularizing Kernel Usage. VISIGRAPP (Revised Selected Papers) 2022: 222-247 - [c78]Thiago Dong Chen, Gabriel Bianchin de Oliveira, Zanoni Dias:
Ensemble of Patches for COVID-19 X-Ray Image Classification. ICAART (3) 2022: 561-567 - [c77]Gabriel Bianchin de Oliveira, Lucas David, Rafael Padilha, Ana Paula da Silva, Francine de Paula, Lucas Infante, Lucio Jorge, Patricia Xavier, Zanoni Dias:
Bias Assessment in Medical Imaging Analysis: A Case Study on Retinal OCT Image Classification. ICAART (3) 2022: 574-580 - [c76]Felipe Lopes de Mello, Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
Prediction of Protein Molecular Functions Using Transformers. ICAISC (2) 2022: 379-387 - [c75]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. ISBRA 2022: 100-113 - [c74]Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Sorting by k-Cuts on Signed Permutations. RECOMB-CG 2022: 189-204 - [c73]Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias:
A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions. RECOMB-CG 2022: 205-220 - [c72]Lucas Oliveira David, Hélio Pedrini, Zanoni Dias:
MinMax-CAM: Improving Focus of CAM-based Visualization Techniques in Multi-label Problems. VISIGRAPP (4: VISAPP) 2022: 106-117 - [c71]Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
A 1.375-Approximation Algorithm for Sorting by Transpositions with Faster Running Time. BSB 2022: 147-157 - [i2]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
On the Complexity of Some Variations of Sorting by Transpositions. CoRR abs/2202.08357 (2022) - [i1]Pedro Olímpio Pinheiro, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Cid C. de Souza, Zanoni Dias:
Algorithms for the Maximum Eulerian Cycle Decomposition Problem. CoRR abs/2203.05446 (2022) - 2021
- [j48]Guilherme Henrique Santos Miranda, Alexsandro Oliveira Alexandrino, Carla Negri Lintzmayer, Zanoni Dias:
Approximation Algorithms for Sorting λ-Permutations by λ-Operations. Algorithms 14(6): 175 (2021) - [j47]Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Zanoni Dias:
Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions. Algorithms Mol. Biol. 16(1): 21 (2021) - [j46]Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias:
An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes. Algorithms Mol. Biol. 16(1): 24 (2021) - [j45]Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Reversals and transpositions distance with proportion restriction. J. Bioinform. Comput. Biol. 19(4): 2150013:1-2150013:27 (2021) - [j44]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Incorporating intergenic regions into reversal and transposition distances with indels. J. Bioinform. Comput. Biol. 19(6): 2140011:1-2140011:13 (2021) - [j43]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Genome Rearrangement Distance with Reversals, Transpositions, and Indels. J. Comput. Biol. 28(3): 235-247 (2021) - [j42]Alexsandro Oliveira Alexandrino, Guilherme Henrique Santos Miranda, Carla Negri Lintzmayer, Zanoni Dias:
Length-weighted λ-rearrangement distance. J. Comb. Optim. 41(3): 579-602 (2021) - [j41]Bruno Malveira Peixoto, Bahram Lavi, Zanoni Dias, Anderson Rocha:
Harnessing high-level concepts, visual, and auditory features for violence detection in videos. J. Vis. Commun. Image Represent. 78: 103174 (2021) - [j40]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
Sorting Permutations by Intergenic Operations. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2080-2093 (2021) - [j39]Gabriel Siqueira, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
Heuristics for Genome Rearrangement Distance With Replicated Genes. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2094-2108 (2021) - [j38]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Laurent Bulteau, Ulisses Dias, Zanoni Dias:
Sorting Signed Permutations by Intergenic Reversals. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2870-2876 (2021) - [j37]Caroline Mazini Rodrigues, Aurea Soriano-Vargas, Bahram Lavi, Anderson Rocha, Zanoni Dias:
Manifold Learning for Real-World Event Understanding. IEEE Trans. Inf. Forensics Secur. 16: 2957-2972 (2021) - [c70]Alexsandro Oliveira Alexandrino, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Reversal Distance on Genomes with Different Gene Content and Intergenic Regions Information. AlCoB 2021: 121-133 - [c69]Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Reversals Distance Considering Flexible Intergenic Regions Sizes. AlCoB 2021: 134-145 - [c68]Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
MMEC: Multi-Modal Ensemble Classifier for Protein Secondary Structure Prediction. CAIP (1) 2021: 175-184 - [c67]Lucas Oliveira David, Hélio Pedrini, Zanoni Dias, Anderson Rocha:
Authentication of Vincent van Gogh's Work. CAIP (2) 2021: 371-380 - [c66]Tiago Martinho de Barros, Hélio Pedrini, Zanoni Dias:
Data-Augmented Emoji Approach to Sentiment Classification of Tweets. CIARP 2021: 67-76 - [c65]Klairton Lima Brito, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Ulisses Dias, Zanoni Dias:
Reversal and Transposition Distance of Genomes Considering Flexible Intergenic Regions. LAGOS 2021: 21-29 - [c64]Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
Protein secondary structure prediction based on fusion of machine learning classifiers. SAC 2021: 26-29 - [c63]Tiago Martinho de Barros, Hélio Pedrini, Zanoni Dias:
Leveraging emoji to improve sentiment classification of tweets. SAC 2021: 845-852 - [c62]Lucas Oliveira David, Hélio Pedrini, Zanoni Dias, Anderson Rocha:
Connoisseur: Provenance Analysis in Paintings. SSCI 2021: 1-8 - [c61]Daniel Ferber, Felipe Vieira, João Dalben, Mariana Ferraz, Nicholas Sato, Gabriel Bianchin de Oliveira, Rafael Padilha, Zanoni Dias:
Deep Learning-Based COVID-19 Diagnostics of Low-Quality CT Images. BSB 2021: 69-80 - [c60]Gabriel Siqueira, Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Zanoni Dias:
Heuristics for Cycle Packing of Adjacency Graphs for Genomes with Repeated Genes. BSB 2021: 93-105 - 2020
- [j36]Rafael Padilha, Caroline Mazini Rodrigues, Fernanda A. Andaló, Gabriel Bertocco, Zanoni Dias, Anderson Rocha:
Forensic Event Analysis: From Seemingly Unrelated Data to Understanding. IEEE Secur. Priv. 18(6): 23-32 (2020) - [j35]Alexsandro Oliveira Alexandrino, Carla Negri Lintzmayer, Zanoni Dias:
Sorting permutations by fragmentation-weighted operations. J. Bioinform. Comput. Biol. 18(2): 2050006:1-2050006:31 (2020) - [j34]Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes. J. Comput. Biol. 27(2): 156-174 (2020) - [j33]Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
On the Complexity of Some Variations of Sorting by Transpositions. J. Univers. Comput. Sci. 26(9): 1076-1094 (2020) - [j32]Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Heuristics for the Reversal and Transposition Distance Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 17(1): 2-13 (2020) - [c59]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. AlCoB 2020: 16-28 - [c58]Gabriel Siqueira, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
Heuristics for Reversal Distance Between Genomes with Duplicated Genes. AlCoB 2020: 29-40 - [c57]Bruno Peixoto, Bahram Lavi, Paolo Bestagini, Zanoni Dias, Anderson Rocha:
Multimodal Violence Detection in Videos. ICASSP 2020: 2957-2961 - [c56]Vinicius Teixeira, Leodécio Braz, Hélio Pedrini, Zanoni Dias:
DuaLAnet: Dual Lesion Attention Network for Thoracic Disease Classification in Chest X-Rays. IWSSIP 2020: 69-74 - [c55]Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
Ensemble of Bidirectional Recurrent Networks and Random Forests for Protein Secondary Structure Prediction. IWSSIP 2020: 311-316 - [c54]Gabriel Bianchin de Oliveira, Hélio Pedrini, Zanoni Dias:
Fusion of BLAST and Ensemble of Classifiers for Protein Secondary Structure Prediction. SIBGRAPI 2020: 308-315 - [c53]Gabriel Bianchin de Oliveira, Rafael Padilha, André Dorte, Luis Cereda, Luiz Miyazaki, Maurício Lopes, Zanoni Dias:
COVID-19 X-ray Image Diagnostic with Deep Neural Networks. BSB 2020: 57-68 - [c52]Guilherme Tiaki Sassai Sato, Leodécio Braz da Silva Segundo, Zanoni Dias:
Classification of Musculoskeletal Abnormalities with Convolutional Neural Networks. BSB 2020: 69-80 - [c51]Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Sorting by Reversals and Transpositions with Proportion Restriction. BSB 2020: 117-128 - [c50]Pedro Olímpio Pinheiro, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Cid Carvalho de Souza, Zanoni Dias:
Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems. BSB 2020: 129-140 - [c49]Leodécio Braz, Vinicius Teixeira, Hélio Pedrini, Zanoni Dias:
ImTeNet: Image-Text Classification Network for Abnormality Detection and Automatic Reporting on Musculoskeletal Radiographs. BSB 2020: 150-161
2010 – 2019
- 2019
- [j31]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Super short operations on both gene order and intergenic sizes. Algorithms Mol. Biol. 14(1): 21:1-21:17 (2019) - [j30]Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias, Ulisses Dias:
Sorting by Weighted Reversals and Transpositions. J. Comput. Biol. 26(5): 420-431 (2019) - [j29]Andre Rodrigues Oliveira, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
On the Complexity of Sorting by Reversals and Transpositions Problems. J. Comput. Biol. 26(11): 1223-1229 (2019) - [j28]Guilherme Henrique Santos Miranda, Carla Negri Lintzmayer, Zanoni Dias:
Sorting Permutations by λ-Operations. J. Univers. Comput. Sci. 25(2): 98-121 (2019) - [j27]Javier Alvaro Vargas Muñoz, Marcos André Gonçalves, Zanoni Dias, Ricardo da Silva Torres:
Hierarchical Clustering-Based Graphs for Large Scale Approximate Nearest Neighbor Search. Pattern Recognit. 96 (2019) - [c48]Bruno Peixoto, Bahram Lavi, João Paulo Pereira Martin, Sandra Avila, Zanoni Dias, Anderson Rocha:
Toward Subjective Violence Detection in Videos. ICASSP 2019: 8276-8280 - [c47]Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes. ISBRA 2019: 28-39 - [c46]Javier Alvaro Vargas Muñoz, Zanoni Dias, Ricardo da Silva Torres:
A Genetic Programming Approach for Searching on Nearest Neighbors Graphs. ICMR 2019: 43-47 - [c45]Caroline Mazini Rodrigues, Luís A. M. Pereira, Anderson Rocha, Zanoni Dias:
Image Semantic Representation for Event Understanding. WIFS 2019: 1-6 - [c44]Ulisses Dias, Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias:
Block-Interchange Distance Considering Intergenic Regions. BSB 2019: 58-69 - [c43]Alexsandro Oliveira Alexandrino, Guilherme Henrique Santos Miranda, Carla Negri Lintzmayer, Zanoni Dias:
Approximation Algorithms for Sorting Permutations by Length-Weighted Short Rearrangements. LAGOS 2019: 29-40 - [c42]Ana Paula dos Santos Dantas, Cid Carvalho de Souza, Zanoni Dias:
A GRASP for the Convex Recoloring Problem in Graphs. LAGOS 2019: 379-391 - 2018
- [j26]Andre Rodrigues Oliveira, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Sorting signed circular permutations by super short operations. Algorithms Mol. Biol. 13(1): 13:1-13:16 (2018) - [j25]Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias:
A GRASP-Based Heuristic for the Sorting by Length-Weighted Inversions Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 15(2): 352-363 (2018) - [j24]Carla Negri Lintzmayer, Guillaume Fertin, Zanoni Dias:
Sorting permutations and binary strings by length-weighted rearrangements. Theor. Comput. Sci. 715: 35-59 (2018) - [c41]Bruno Malveira Peixoto, Sandra Avila, Zanoni Dias, Anderson Rocha:
Breaking down violence: A deep-learning strategy to model and classify violence in videos. ARES 2018: 50:1-50:7 - [c40]Alexsandro Oliveira Alexandrino, Carla Negri Lintzmayer, Zanoni Dias:
Approximation Algorithms for Sorting Permutations by Fragmentation-Weighted Operations. AlCoB 2018: 53-64 - [c39]Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Heuristics for the Sorting Signed Permutations by Reversals and Transpositions Problem. AlCoB 2018: 65-75 - [c38]Guilherme Henrique Santos Miranda, Carla Negri Lintzmayer, Zanoni Dias:
Sorting Permutations by Limited-Size Operations. AlCoB 2018: 76-87 - [c37]Guilherme Henrique Santos Miranda, Alexsandro Oliveira Alexandrino, Carla Negri Lintzmayer, Zanoni Dias:
Sorting λ-Permutations by λ-Operations. BSB 2018: 1-13 - [c36]Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Super Short Reversals on Both Gene Order and Intergenic Sizes. BSB 2018: 14-25 - [c35]Andre Rodrigues Oliveira, Klairton Lima Brito, Zanoni Dias, Ulisses Dias:
Sorting by Weighted Reversals and Transpositions. BSB 2018: 38-49 - 2017
- [j23]Carla Negri Lintzmayer, Guillaume Fertin, Zanoni Dias:
Sorting permutations by prefix and suffix rearrangements. J. Bioinform. Comput. Biol. 15(1): 1750002:1-1750002:46 (2017) - [j22]Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
On the Sorting by Reversals and Transpositions Problem. J. Univers. Comput. Sci. 23(9): 868-906 (2017) - [j21]Filipe de Oliveira Costa, Alberto A. de Oliveira, Pasquale Ferrara, Zanoni Dias, Siome Goldenstein, Anderson Rocha:
New dissimilarity measures for image phylogeny reconstruction. Pattern Anal. Appl. 20(4): 1289-1305 (2017) - [j20]Gustavo Rodrigues Galvão, Christian Baudet, Zanoni Dias:
Sorting Circular Permutations by Super Short Reversals. IEEE ACM Trans. Comput. Biol. Bioinform. 14(3): 620-633 (2017) - 2016
- [j19]Marina A. Oikawa, Zanoni Dias, Anderson Rocha, Siome Goldenstein:
Distances in multimedia phylogeny. Int. Trans. Oper. Res. 23(5): 921-946 (2016) - [j18]Marina A. Oikawa, Zanoni Dias, Anderson de Rezende Rocha, Siome Goldenstein:
Manifold Learning and Spectral Clustering for Image Phylogeny Forests. IEEE Trans. Inf. Forensics Secur. 11(1): 5-18 (2016) - [j17]Alberto A. de Oliveira, Pasquale Ferrara, Alessia De Rosa, Alessandro Piva, Mauro Barni, Siome Goldenstein, Zanoni Dias, Anderson Rocha:
Multiple Parenting Phylogeny Relationships in Digital Images. IEEE Trans. Inf. Forensics Secur. 11(2): 328-343 (2016) - [c34]Filipe de Oliveira Costa, Silvia Lameri, Paolo Bestagini, Zanoni Dias, Stefano Tubaro, Anderson Rocha:
Hash-based frame selection for video phylogeny. WIFS 2016: 1-6 - 2015
- [j16]Gustavo Rodrigues Galvão, Orlando Lee, Zanoni Dias:
Sorting signed permutations by short operations. Algorithms Mol. Biol. 10: 12 (2015) - [j15]Christian Baudet, Ulisses Dias, Zanoni Dias:
Sorting by weighted inversions considering length and symmetry. BMC Bioinform. 16(S19): S3 (2015) - [j14]Zanoni Dias, Ulisses Dias:
Sorting by Prefix Reversals and Prefix Transpositions. Discret. Appl. Math. 181: 78-89 (2015) - [j13]Carla Negri Lintzmayer, Guillaume Fertin, Zanoni Dias:
Approximation algorithms for sorting by length-weighted prefix and suffix operations. Theor. Comput. Sci. 593: 26-41 (2015) - [c33]Filipe de Oliveira Costa, S. Lameri, Paolo Bestagini, Zanoni Dias, Anderson Rocha, Marco Tagliasacchi, Stefano Tubaro:
Phylogeny reconstruction for misaligned and compressed video sequences. ICIP 2015: 301-305 - [c32]Gustavo Rodrigues Galvão, Christian Baudet, Zanoni Dias:
Sorting Signed Circular Permutations by Super Short Reversals. ISBRA 2015: 272-283 - 2014
- [j12]Ulisses Dias, Gustavo Rodrigues Galvão, Carla Negri Lintzmayer, Zanoni Dias:
A general heuristic for genome rearrangement problems. J. Bioinform. Comput. Biol. 12(3) (2014) - [j11]Gustavo Rodrigues Galvão, Zanoni Dias:
An Audit Tool for Genome Rearrangement Algorithms. ACM J. Exp. Algorithmics 19(1) (2014) - [j10]Gustavo Rodrigues Galvão, Zanoni Dias:
On Alternative Approaches for Approximating the Transposition Distance. J. Univers. Comput. Sci. 20(9): 1259-1283 (2014) - [j9]Filipe de Oliveira Costa, Marina A. Oikawa, Zanoni Dias, Siome Goldenstein, Anderson de Rezende Rocha:
Image Phylogeny Forests Reconstruction. IEEE Trans. Inf. Forensics Secur. 9(10): 1533-1546 (2014) - [c31]Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias:
Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutations. AlCoB 2014: 59-70 - [c30]Carla Negri Lintzmayer, Zanoni Dias:
On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions. AlCoB 2014: 146-157 - [c29]Carla Negri Lintzmayer, Zanoni Dias:
On the Diameter of Rearrangement Problems. AlCoB 2014: 158-170 - [c28]Gustavo Rodrigues Galvão, Zanoni Dias:
Approximation algorithms for sorting by signed short reversals. BCB 2014: 360-369 - [c27]Ulisses Dias, Andre Rodrigues Oliveira, Zanoni Dias:
An improved algorithm for the sorting by reversals and transpositions problem. BCB 2014: 400-409 - [c26]Alberto A. de Oliveira, Pasquale Ferrara, Alessia De Rosa, Alessandro Piva, Mauro Barni, Siome Goldenstein, Zanoni Dias, Anderson Rocha:
Multiple parenting identification in image phylogeny. ICIP 2014: 5347-5351 - [c25]Carla Negri Lintzmayer, Zanoni Dias:
Sorting Permutations by Prefix and Suffix Versions of Reversals and Transpositions. LATIN 2014: 671-682 - [c24]Christian Baudet, Ulisses Dias, Zanoni Dias:
Length and Symmetry on the Sorting by Weighted Inversions Problem. BSB 2014: 99-106 - 2013
- [j8]Zanoni Dias, Siome Goldenstein, Anderson Rocha:
Large-Scale Image Phylogeny: Tracing Image Ancestral Relationships. IEEE Multim. 20(3): 58-70 (2013) - [j7]Ulisses Dias, Zanoni Dias:
Heuristics for the Transposition Distance Problem. J. Bioinform. Comput. Biol. 11(5) (2013) - [j6]Zanoni Dias, Siome Goldenstein, Anderson Rocha:
Exploring heuristic and optimum branching algorithms for image phylogeny. J. Vis. Commun. Image Represent. 24(7): 1124-1134 (2013) - [c23]Ulisses Dias, Christian Baudet, Zanoni Dias:
Greedy Randomized Search Procedure to Sort Genomes using Symmetric, Almost-Symmetric and Unitary Inversions. BCB 2013: 181 - [c22]Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias:
Heuristics for the Sorting by Length-Weighted Inversion Problem. BCB 2013: 498 - 2012
- [j5]Christian Baudet, Zanoni Dias, Marie-France Sagot:
Sampling solution traces for the problem of sorting permutations by signed reversals. Algorithms Mol. Biol. 7: 18 (2012) - [j4]Zanoni Dias, Ulisses Dias, João C. Setubal:
SIS: a program to generate draft genome sequence scaffolds for prokaryotes. BMC Bioinform. 13: 96 (2012) - [j3]Zanoni Dias, Anderson Rocha, Siome Goldenstein:
Image Phylogeny by Minimal Spanning Trees. IEEE Trans. Inf. Forensics Secur. 7(2): 774-788 (2012) - [c21]André Atanasio M. Almeida, Zanoni Dias:
Improvements to a Multiple Protein Sequence Alignment Tool. BIOINFORMATICS 2012: 226-233 - [c20]Zanoni Dias, Ulisses Dias, Lenwood S. Heath, João C. Setubal:
Sorting genomes using almost-symmetric inversions. SAC 2012: 1368-1374 - [c19]Gustavo Rodrigues Galvão, Zanoni Dias:
On the Approximation Ratio of Algorithms for Sorting by Transpositions without Using Cycle Graphs. BSB 2012: 25-36 - 2011
- [c18]Zanoni Dias, Ulisses Dias, João C. Setubal:
Using inversion signatures to generate draft genome sequence scaffolds. BCB 2011: 39-48 - [c17]Christian Baudet, Zanoni Dias:
Partial enumeration of solutions traces for the problem of sorting by signed reversals. BCB 2011: 505-507 - [c16]Gustavo Rodrigues Galvão, Zanoni Dias:
Computing rearrangement distance of every permutation in the symmetric group. SAC 2011: 106-107 - [c15]Zanoni Dias, Anderson Rocha, Siome Goldenstein:
Video Phylogeny: Recovering near-duplicate video relationships. WIFS 2011: 1-6 - 2010
- [j2]Christian Baudet, Claire Lemaitre, Zanoni Dias, Christian Gautier, Eric Tannier, Marie-France Sagot:
Cassis: detection of genomic rearrangement breakpoints. Bioinform. 26(15): 1897-1898 (2010) - [c14]Ulisses Dias, Zanoni Dias:
An improved 1.375-approximation algorithm for the transposition distance problem. BCB 2010: 334-337 - [c13]Ulisses Dias, Zanoni Dias, João C. Setubal:
A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes. RECOMB-CG 2010: 240-251 - [c12]Christian Baudet, Zanoni Dias:
An improved algorithm to enumerate all traces that sort a signed permutation by reversals. SAC 2010: 1521-1525 - [c11]Zanoni Dias, Anderson Rocha, Siome Goldenstein:
First steps toward image phylogeny. WIFS 2010: 1-6
2000 – 2009
- 2009
- [c10]Ulisses Dias, Zanoni Dias:
Constraint Programming Models for Transposition Distance Problem. BSB 2009: 13-23 - 2008
- [c9]Cleber V. G. Mira, Zanoni Dias, Hederson P. Santos, Guilherme A. Pinto, Maria Emília M. T. Walter:
Transposition Distance Based on the Algebraic Formalism. BSB 2008: 115-126 - 2007
- [c8]Christian Baudet, Zanoni Dias:
New EST Trimming Procedure Applied to SUCEST Sequences. BSB 2007: 57-68 - 2005
- [c7]Miguel Galves, Zanoni Dias:
Comparison of Genomic DNA to cDNA Alignment Methods. BSB 2005: 170-180 - [c6]Christian Baudet, Zanoni Dias:
New EST Trimming Strategy. BSB 2005: 206-209 - 2003
- [c5]Zanoni Dias, João Meidanis:
The Syntenic Distance Problem Using Only Fusions and Fussions. WOB 2003: 72-79 - 2002
- [b1]Zanoni Dias:
Rearranjo de genomas: uma coletanea de artigos. University of Campinas, Brazil, 2002 - [j1]João Meidanis, Maria Emília Telles Walter, Zanoni Dias:
A Lower Bound on the Reversal and Transposition Diameter. J. Comput. Biol. 9(5): 743-745 (2002) - [c4]Zanoni Dias, João Meidanis:
Sorting by Prefix Transpositions. SPIRE 2002: 65-76 - 2001
- [c3]Zanoni Dias, João Meidanis:
Genome Rearrangements Distance by Fusion, Fission, and Transposition is Easy. SPIRE 2001: 250-253 - 2000
- [c2]Maria Emília Telles Walter, Zanoni Dias, João Meidanis:
A New Approach for Approximating the Tranposition Distance. SPIRE 2000: 199-208
1990 – 1999
- 1998
- [c1]Maria Emília Telles Walter, Zanoni Dias, João Meidanis:
Reversal and Transposition Distance of Linear Chromosomes. SPIRE 1998: 96-102
Coauthor Index
[j61] [c87] [j57] [j56] [j55] [j53] [j52] [c81] [j50] [c75] [c74] [c73] [c71] [i2] [j46] [j45] [j44] [j43] [j40] [j39] [j38] [c70] [c69] [c65] [j34] [j33] [j32] [c59] [c58] [c51] [j31] [j30] [j29] [c47] [c44] [j26] [j25] [c39] [c36] [c35] [j22] [j15] [j14] [j12] [c31] [c27] [c24] [j7] [c23] [c22] [j4] [c20] [c18] [c14] [c13] [c10]
Anderson Rocha 0001
aka: Anderson de Rezende Rocha
aka: Anderson de Rezende Rocha
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