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John D. Osborne
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2020 – today
- 2024
- [j5]Abdullateef I. Almudaifer, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M. Carroll, Estera Crisan, William Bradford, Lauren Walter, Ellen F. Eaton, Sue S. Feldman, John D. Osborne
:
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection. J. Biomed. Semant. 15(1): 11 (2024) - [i4]Abdullateef I. Almudaifer, Tobias O'Leary, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M. Carroll, Estera Crisan, William Bradford, Lauren Walter, Ellen F. Eaton, Sue S. Feldman, John D. Osborne:
Transfer Learning for the Prediction of Entity Modifiers in Clinical Text: Application to Opioid Use Disorder Case Detection. CoRR abs/2401.15222 (2024) - 2023
- [j4]Sijia Liu
, Andrew Wen
, Liwei Wang
, Huan He
, Sunyang Fu
, Robert T. Miller, Andrew E. Williams
, Daniel R. Harris
, Ramakanth Kavuluru
, Mei Liu
, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang
, Masoud Rouhizadeh
, John D. Osborne
, Yongqun He
, Umit Topaloglu
, Stephanie S. Hong, Joel H. Saltz
, Thomas Schaffter
, Emily R. Pfaff
, Christopher G. Chute
, Tim Duong, Melissa A. Haendel
, Rafael Fuentes, Peter Szolovits
, Hua Xu
, Hongfang Liu
:
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. 30(12): 2036-2040 (2023) - [c10]Abdullateef I. Almudaifer, Sue S. Feldman, Tobias O'Leary, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Estera Crisan, Kevin Riggs, Lauren Walter, John D. Osborne
:
Annotation of Opioid Use Disorder Entity Modifiers in Clinical Text. MedInfo 2023: 1458-1459 - 2022
- [j3]Aleksandra Foksinska, Camerron M. Crowder
, Andrew B. Crouse, Jeff Henrikson, William E. Byrd, Gregory Rosenblatt, Michael J. Patton
, Kaiwen He, Thi K. Tran-Nguyen, Marissa Zheng, Stephen A. Ramsey, Nada Amin, John D. Osborne
, Matthew Might:
The precision medicine process for treating rare disease using the artificial intelligence tool mediKanren. Frontiers Artif. Intell. 5 (2022) - [i3]John D. Osborne, Tobias O'Leary, Akhil Nadimpalli, Salma M. Aly, Richard E. Kennedy:
BRATsynthetic: Text De-identification using a Markov Chain Replacement Strategy for Surrogate Personal Identifying Information. CoRR abs/2210.16125 (2022) - 2021
- [c9]John D. Osborne, Tobias O'Leary, Abdullateef I. Almudaifer, Whitney L. Covington, Caleb M. Carroll, Ellen F. Eaton, Rachel A. Lee, Sue S. Feldman, Lauren Walter:
Towards Identification of Opiate Use Disorder in Clinical Text. AMIA 2021 - [i2]Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu:
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C). CoRR abs/2110.10780 (2021) - 2020
- [c8]John D. Osborne, James S. Booth, Tobias O'Leary, Amy Mudano, Giovanna Rosas, Phillip Foster, Kenneth Saag, Maria I. Danila:
Identification of Gout Flares in Chief Complaint Text Using Natural Language Processing. AMIA 2020 - [c7]Amy Y. Wang, John D. Osborne, Maria I. Danila, Andrew Naidech, David M. Liebovitz:
AllergyMap: An Open Source Corpus of Allergy Mention Normalizations. AMIA 2020 - [c6]James J. Cimino, Wayne H. Liang
, Jelai Wang, Dongmei Sun, John David Osborne, Amy Y. Wang, S. Louis Bridges, Matthew C. Wyatt, Jake Y. Chen
:
Empowering Team Science Across the Translational Spectrum with the UAB Biomedical Research Infrastructure Technology Enhancement (U-BRITE). IRI 2020: 194-200 - [c5]John D. Osborne
, Tobias O'Leary, James Del Monte, Kuleen Sasse:
Identification of Cancer Entities in Clinical Text Combining Transformers with Dictionary Features. IberLEF@SEPLN 2020: 458-467
2010 – 2019
- 2018
- [j2]John David Osborne
, Matthew B. Neu, Maria I. Danila, Thamar Solorio, Steven J. Bethard
:
CUILESS2016: a clinical corpus applying compositional normalization of text mentions. J. Biomed. Semant. 9(1): 2:1-2:9 (2018) - [c4]John David Osborne, Adarsh Khare, Donald D. Dempsey, James M. Wells, Matthew C. Wyatt, Geoffrey D. Gordon, Wayne H. Liang, James J. Cimino:
Phenotype Detection Registry System (PheDRS) - Implementation of a Generalizable Single Institution Clinical Registry Architecture. AMIA 2018 - 2016
- [j1]John David Osborne
, Matthew C. Wyatt, Andrew O. Westfall, James H. Willig, Steven Bethard
, Geoffrey D. Gordon:
Efficient identification of nationally mandated reportable cancer cases using natural language processing and machine learning. J. Am. Medical Informatics Assoc. 23(6): 1077-1084 (2016) - 2015
- [c3]James Gung, John David Osborne, Steven Bethard:
CUAB: Supervised Learning of Disorders and their Attributes using Relations. SemEval@NAACL-HLT 2015: 417-421 - 2014
- [i1]John David Osborne, Binod Gyawali, Thamar Solorio:
Evaluation of YTEX and MetaMap for clinical concept recognition. CoRR abs/1402.1668 (2014) - 2013
- [c2]John David Osborne, Binod Gyawali, Thamar Solorio:
Evaluation of YTEX and MetaMap for Clinical Concept Recognition. CLEF (Working Notes) 2013 - 2011
- [c1]John David Osborne, Song Gao, Wei-bang Chen, Aleodor Andea, Chengcui Zhang:
Machine classification of melanoma and nevi from skin lesions. SAC 2011: 100-105
Coauthor Index
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last updated on 2024-08-05 20:17 CEST by the dblp team
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