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Konstantinos D. Tsirigos
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2020 – today
- 2022
- [j16]Federica Quaglia
, Bálint Mészáros
, Edoardo Salladini
, András Hatos
, Rita Pancsa
, Lucía B. Chemes
, Mátyás Pajkos
, Tamas Lazar
, Samuel Peña-Díaz
, Jaime Santos
, Veronika Ács
, Nazanin Farahi
, Erzsébet Fichó
, Maria Cristina Aspromonte
, Claudio Bassot
, Anastasia Chasapi
, Norman E. Davey
, Radoslav Davidovic
, Laszlo Dobson
, Arne Elofsson
, Gábor Erdös
, Pascale Gaudet
, Michelle G. Giglio
, Juliana Glavina
, Javier Iserte
, Valentín Iglesias
, Zsófia L. Kálmán
, Matteo Lambrughi
, Emanuela Leonardi
, Sonia Longhi
, Sandra Macedo-Ribeiro
, Emiliano Maiani
, Julia Marchetti
, Cristina Marino Buslje
, Attila Meszaros
, Alexander Miguel Monzon
, Giovanni Minervini
, Suvarna Nadendla
, Juliet F. Nilsson
, Marián Novotný
, Christos A. Ouzounis
, Nicolas Palopoli
, Elena Papaleo
, Pedro J. Barbosa Pereira
, Gabriele Pozzati
, Vasilis J. Promponas
, Jordi Pujols
, Alma Carolina Sanchez Rocha
, Martin Salas
, Luciana Rodriguez Sawicki
, Éva Schád, Aditi Shenoy
, Tamás Szaniszló
, Konstantinos D. Tsirigos
, Nevena Veljkovic
, Gustavo D. Parisi
, Salvador Ventura
, Zsuzsanna Dosztányi
, Peter Tompa
, Silvio C. E. Tosatto
, Damiano Piovesan
:
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50(D1): 480-487 (2022) - 2021
- [j15]Ahmed F. Roumia
, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Ioannis A. Tamposis, Stavros J. Hamodrakas, Pantelis G. Bagos:
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins. Frontiers Bioinform. 1 (2021)
2010 – 2019
- 2019
- [j14]Ioannis A. Tamposis, Konstantinos D. Tsirigos
, Margarita C. Theodoropoulou, Panagiota I. Kontou, Pantelis G. Bagos
:
Semi-supervised learning of Hidden Markov Models for biological sequence analysis. Bioinform. 35(13): 2208-2215 (2019) - [j13]Ioannis A. Tamposis, Konstantinos D. Tsirigos
, Margarita C. Theodoropoulou, Panagiota I. Kontou, Georgios N. Tsaousis
, Dimitra Sarantopoulou
, Zoi I. Litou, Pantelis G. Bagos
:
JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis. Bioinform. 35(24): 5309-5312 (2019) - 2018
- [j12]Ioannis A. Tamposis, Margarita C. Theodoropoulou, Konstantinos D. Tsirigos
, Pantelis G. Bagos
:
Extending hidden Markov models to allow conditioning on previous observations. J. Bioinform. Comput. Biol. 16(5): 1850019:1-1850019:21 (2018) - 2017
- [j11]Niki L. Dimou
, Konstantinos D. Tsirigos
, Arne Elofsson, Pantelis G. Bagos:
GWAR: robust analysis and meta-analysis of genome-wide association studies. Bioinform. 33(10): 1521-1527 (2017) - [j10]Damiano Piovesan
, Francesco Tabaro
, Ivan Micetic
, Marco Necci
, Federica Quaglia
, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic
, Zsuzsanna Dosztányi
, Arne Elofsson, Alessandra Gasparini, András Hatos
, Andrey V. Kajava
, Lajos Kalmár
, Emanuela Leonardi
, Tamas Lazar, Sandra Macedo-Ribeiro
, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai
, Jordi Pujols, Daniel B. Roche, Edoardo Salladini
, Éva Schád, Antoine Schramm, Beáta Szabó
, Ágnes Tantos, Fiorella Tonello
, Konstantinos D. Tsirigos
, Nevena Veljkovic
, Salvador Ventura
, Wim F. Vranken
, Per Warholm
, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi
, Peter Tompa, Silvio C. E. Tosatto
:
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45(Database-Issue): D219-D227 (2017) - 2016
- [j9]Christoph Peters, Konstantinos D. Tsirigos
, Nanjiang Shu, Arne Elofsson:
Improved topology prediction using the terminal hydrophobic helices rule. Bioinform. 32(8): 1158-1162 (2016) - [j8]Sikander Hayat
, Christoph Peters, Nanjiang Shu, Konstantinos D. Tsirigos
, Arne Elofsson:
Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins. Bioinform. 32(10): 1571-1573 (2016) - [j7]Konstantinos D. Tsirigos
, Arne Elofsson, Pantelis G. Bagos
:
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins. Bioinform. 32(17): 665-671 (2016) - 2015
- [j6]Patricia C. Babbitt, Pantelis G. Bagos
, Amos Bairoch
, Alex Bateman, Arnaud Chatonnet
, Mark Jinan Chen
, David J. Craik
, Robert D. Finn, David E. Gloriam
, Daniel H. Haft, Bernard Henrissat
, Gemma L. Holliday
, Vignir Ísberg
, Quentin Kaas
, David Landsman
, Nicolas Lenfant
, Gerard Manning
, Nozomi Nagano
, Narayanaswamy Srinivasan, Claire O'Donovan
, Kim D. Pruitt
, Ramanathan Sowdhamini, Neil D. Rawlings
, Milton H. Saier Jr.
, Joanna L. Sharman
, Michael Spedding
, Konstantinos D. Tsirigos
, Åke Västermark, Gerrit Vriend:
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015) - [j5]Konstantinos D. Tsirigos
, Christoph Peters, Nanjiang Shu
, Lukas Käll
, Arne Elofsson:
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides. Nucleic Acids Res. 43(Webserver-Issue): W401-W407 (2015) - 2012
- [c1]Danai K. Fimereli
, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos
, Stavros J. Hamodrakas:
CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. SETN 2012: 285-290 - 2011
- [j4]Konstantinos D. Tsirigos
, Pantelis G. Bagos
, Stavros J. Hamodrakas:
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria. Nucleic Acids Res. 39(Database-Issue): 324-331 (2011) - 2010
- [j3]Georgios N. Tsaousis
, Konstantinos D. Tsirigos
, Xanthi D. Andrianou
, Theodore D. Liakopoulos, Pantelis G. Bagos
, Stavros J. Hamodrakas:
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins. Bioinform. 26(19): 2490-2492 (2010) - [j2]Pantelis G. Bagos
, Elisanthi P. Nikolaou, Theodore D. Liakopoulos, Konstantinos D. Tsirigos
:
Combined prediction of Tat and Sec signal peptides with hidden Markov models. Bioinform. 26(22): 2811-2817 (2010)
2000 – 2009
- 2008
- [j1]Zoi I. Litou, Pantelis G. Bagos
, Konstantinos D. Tsirigos
, Theodore D. Liakopoulos, Stavros J. Hamodrakas:
Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. J. Bioinform. Comput. Biol. 6(2): 387-401 (2008)
Coauthor Index
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