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2020 – today
- 2022
[j30]Shohei Yamaguchi, Haruka Nakashima, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu:
Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning. Comput. Biol. Chem. 100: 107744 (2022)- [j29]Kano Hasegawa, Yoshitaka Moriwaki, Tohru Terada, Cao Wei, Kentaro Shimizu
:
Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides. J. Bioinform. Comput. Biol. 20(6): 2250026:1-2250026:23 (2022) - 2021
- [j28]Takayuki Osabe, Kentaro Shimizu, Koji Kadota:
Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data. BMC Bioinform. 22(1): 511 (2021) - [j27]Keisuke Yanagisawa, Yoshitaka Moriwaki, Tohru Terada, Kentaro Shimizu:
EXPRORER: Rational Cosolvent Set Construction Method for Cosolvent Molecular Dynamics Using Large-Scale Computation. J. Chem. Inf. Model. 61(6): 2744-2753 (2021) - 2020
- [i2]Xuanyu Yin, Yoko Sasaki, Weimin Wang, Kentaro Shimizu:
YOLO and K-Means Based 3D Object Detection Method on Image and Point Cloud. CoRR abs/2004.11465 (2020) - [i1]Xuanyu Yin, Yoko Sasaki, Weimin Wang, Kentaro Shimizu:
3D Object Detection Method Based on YOLO and K-Means for Image and Point Clouds. CoRR abs/2005.02132 (2020)
2010 – 2019
- 2019
- [j26]Chun Fang, Yoshitaka Moriwaki, Aikui Tian, Caihong Li, Kentaro Shimizu:
Identifying short disorder-to-order binding regions in disordered proteins with a deep convolutional neural network method. J. Bioinform. Comput. Biol. 17(1): 1950004:1-1950004:16 (2019) - [j25]Chun Fang, Yoshitaka Moriwaki, Caihong Li, Kentaro Shimizu:
MoRFPred_en: Sequence-based prediction of MoRFs using an ensemble learning strategy. J. Bioinform. Comput. Biol. 17(6): 1940015:1-1940015:15 (2019) - 2017
- [j24]Masaki Banno, Yusuke Komiyama, Cao Wei, Yuya Oku, Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, Kentaro Shimizu:
Development of a sugar-binding residue prediction system from protein sequences using support vector machine. Comput. Biol. Chem. 66: 36-43 (2017) - 2016
- [j23]Yusuke Komiyama, Masaki Banno, Kokoro Ueki, Gul Saad, Kentaro Shimizu:
Automatic generation of bioinformatics tools for predicting protein-ligand binding sites. Bioinform. 32(6): 901-907 (2016) - [j22]Shunsuke Shigemitsu, Cao Wei, Tohru Terada, Kentaro Shimizu:
Development of a prediction system for tail-anchored proteins. BMC Bioinform. 17: 378 (2016) - [c25]Qian Li, Zhenglu Yang, Wei Cao, Kentaro Shimizu:
An effective system for managing biological data. BESC 2016: 1-2 - 2015
- [j21]Masayuki Yarimizu, Cao Wei, Yusuke Komiyama, Kokoro Ueki, Shugo Nakamura, Kazuya Sumikoshi, Tohru Terada, Kentaro Shimizu:
Tyrosine Kinase Ligand-Receptor Pair Prediction by Using Support Vector Machine. Adv. Bioinformatics 2015: 528097:1-528097:5 (2015) - [j20]Min Tang, Jianqiang Sun, Kentaro Shimizu, Koji Kadota:
Evaluation of methods for differential expression analysis on multi-group RNA-seq count data. BMC Bioinform. 16: 360:1-360:14 (2015) - 2014
- [j19]Tatsuki Negami, Kentaro Shimizu, Tohru Terada:
Coarse-grained molecular dynamics simulations of protein-ligand binding. J. Comput. Chem. 35(25): 1835-1845 (2014) - 2013
- [j18]Jianqiang Sun, Tomoaki Nishiyama, Kentaro Shimizu, Koji Kadota:
TCC: an R package for comparing tag count data with robust normalization strategies. BMC Bioinform. 14: 219 (2013) - [c24]Masafumi Suzuki, Kentaro Shimizu, Shinyo Muto, Naoki Uchida:
Office in the cloud: Web-based cloud platform for Telcos services. ICIN 2013: 39-45 - 2012
- [j17]Koji Kadota, Tomoaki Nishiyama, Kentaro Shimizu:
A normalization strategy for comparing tag count data. Algorithms Mol. Biol. 7: 5 (2012) - [c23]Kentaro Shimizu, Seiji Nishinaga, Shinyo Muto, Naoki Uchida:
Office on Demand: New cloud service platform for carrier. ICIN 2012: 15-21 - 2011
- [j16]Koji Kadota, Kentaro Shimizu:
Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data. BMC Bioinform. 12: 227 (2011) - 2010
- [j15]Seizi Someya, Masanori Kakuta, Mizuki Morita, Kazuya Sumikoshi, Cao Wei, Ge Zhenyi, Osamu Hirose, Shugo Nakamura, Tohru Terada, Kentaro Shimizu:
Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines. Adv. Bioinformatics 2010: 289301:1-289301:9 (2010) - [j14]Ryota Jono, Yuusuke Watanabe, Kentaro Shimizu, Tohru Terada:
Multicanonical ab inito QM/MM molecular dynamics simulation of a peptide in an aqueous environment. J. Comput. Chem. 31(6): 1168-1175 (2010) - [c22]Osamu Hirose, Kentaro Shimizu:
A Self-organizing State Space Approach to Inferring Time-Varying Causalities between Regulatory Proteins. ITBAM 2010: 158-171
2000 – 2009
- 2009
- [j13]Koji Kadota, Yuji Nakai, Kentaro Shimizu:
Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity. Algorithms Mol. Biol. 4 (2009) - [c21]Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu:
Computational Protocol for Screening GPI-anchored Proteins. BICoB 2009: 164-175 - 2008
- [j12]Koji Kadota, Yuji Nakai, Kentaro Shimizu:
A weighted average difference method for detecting differentially expressed genes from microarray data. Algorithms Mol. Biol. 3 (2008) - [j11]Masanori Kakuta, Shugo Nakamura, Kentaro Shimizu:
Prediction of Protein-Protein Interaction Sites Using Only Sequence Information and Using Both Sequence and Structural Information. Inf. Media Technol. 3(2): 351-361 (2008) - 2007
- [c20]Junta Doi, Kentaro Shimizu, Masakazu Sekijima:
High-Density Surface Reconstruction of Fine Arts and Documents for Complete Reproduction and Counterfeit Detection. ICNSC 2007: 392-397 - 2006
- [j10]Koji Kadota, Jiazhen Ye, Yuji Nakai, Tohru Terada, Kentaro Shimizu:
ROKU: a novel method for identification of tissue-specific genes. BMC Bioinform. 7: 294 (2006) - [c19]Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Kentaro Shimizu:
Insight of the Signal Motif of GPI-(like)-anchored Proteins by using SVM. BIOCOMP 2006: 541-546 - [c18]Cao Wei, Kentaro Shimizu:
Identification of GPI-(like)-Anchored Proteins by Using SVM. IMSCCS (2) 2006: 711-715 - [c17]Junta Doi, Kentaro Shimizu, Masahiko Hoshi:
Reuse of reconstructed model of human skull for anthropological and anthropoid morphological model estimation. IRI 2006: 369-374 - [c16]Junta Doi, Kentaro Shimizu, Wataru Sato:
High-Density Scanning Combined with Digital Image of Real Objects for Complete Reproduction of Cultural Artifacts. MFI 2006: 341-346 - [c15]Junta Doi, Kentaro Shimizu, Wataru Sato, Shinji Morishita:
High-Precision Geometric Modeling of 3D Artifacts for Virtual Restoration. VECIMS 2006: 136-141 - 2004
- [j9]Akira Nomoto, Yasuo Watanabe, Wataru Kaneko, Shugo Nakamura, Kentaro Shimizu:
Distributed Shared Arrays: Portable Shared-Memory Programming Interface for Multiple Computer Systems. Clust. Comput. 7(1): 65-72 (2004) - [c14]Akira Nomoto, Wataru Kaneko, Tohru Terada, Shugo Nakamura, Kentaro Shimizu:
Programming Environment Based on Distributed Shared Arrays for High-Performance Scientific Computing. SAINT Workshops 2004: 630-637 - 2003
- [c13]Wataru Kaneko, Kenji Kono, Kentaro Shimizu:
Preemptive Resource Management: Defending against Resource Monopolizing DoS. Applied Informatics 2003: 662-669 - [c12]Wataru Kaneko, Akira Nomoto, Yasuo Watanabe, Shugo Nakamura, Kentaro Shimizu:
Design and Implementation of a Parallel Programming Environment Based on Distributed Shared Arrays. ISHPC 2003: 402-411 - 2002
- [j8]Shugo Nakamura, Daisuke Kyono, Mitsunori Ikeguchi, Kentaro Shimizu:
New method for parallel computation of Hessian matrix of conformational energy function in internal coordinates. J. Comput. Chem. 23(4): 463-469 (2002) - [c11]Masakazu Sekijima, Shinya Takasaki, Shugo Nakamura, Kentaro Shimizu:
Automatic Improvement of Scheduling Policies in Parsley Parallel Programming Environment. IASTED PDCS 2002: 375-380 - 2001
- [j7]Soichi Shigeta, Kentaro Shimizu, Masahiro Sowa:
Access route control by an extended key/lock scheme. Comput. Syst. Sci. Eng. 16(5): 319-325 (2001)
1990 – 1999
- 1999
- [j6]Hiroshi Yoshikawa, Mitsunori Ikeguchi, Shugo Nakamura, Kentaro Shimizu, Junta Doi:
Prediction of protein structure classes and secondary structures by means of hidden Markov models. Syst. Comput. Jpn. 30(13): 13-22 (1999) - 1998
- [j5]Shugo Nakamura, Mitsunori Ikeguchi, Kentaro Shimizu:
Parallel algorithm for efficient calculation of second derivatives of conformational energy function in internal coordinates. J. Comput. Chem. 19(15): 1716-1723 (1998) - [c10]Yasuo Kuhara, Kentaro Shimizu, Junta Doi:
Time-of-Reduction-Recovery Predicton in Neural Networks of Variable Topology to Improve Enzyme Classification. NC 1998: 365-370 - 1995
- [j4]R. C. Betini, Hisao Kameda, Kentaro Shimizu:
Flow Control and Routing Algorithms in WAPSN. Comput. Commun. 18(5): 345-356 (1995) - [c9]Yongbing Zhang, Katsuya Hakozaki, Hisao Kameda, Kentaro Shimizu:
A performance comparison of adaptive and static load balancing in heterogeneous distributed systems. Annual Simulation Symposium 1995: 332-340 - 1994
- [j3]Xiaohua Jia, Kentaro Shimizu, Mamoru Maekawa:
A Paraellel and Nonblocking Updating Mechanism for Replicated Directory Files in Distributed Systems. J. Parallel Distributed Comput. 20(3): 330-340 (1994) - [c8]Yongbing Zhang, Hisao Kameda, Kentaro Shimizu:
Adaptive Bidding Load Balancing Algorithms in Heterogeneous Distributed Systems. MASCOTS 1994: 250-254 - 1992
- [c7]Pradeep Kumar Sinha, Mamoru Maekawa, Kentaro Shimizu:
Improving the Reliability of Name Resolution Mechanism in Distributed Operating Systems. ICDCS 1992: 589-596 - 1991
- [j2]Pradeep Kumar Sinha, Mamoru Maekawa, Kentaro Shimizu, Xiaohua Jia, Hyo Ashihara, Naoki Utsunomiya, Kyu Sung Park, Hirohiko Nakano:
The Galaxy Distributed Operating System. Computer 24(8): 34-41 (1991) - [c6]Pradeep Kumar Sinha, Hyo Ashihara, Kentaro Shimizu, Mamoru Maekawa:
Flexible User-Definable Memory Coherence Scheme in Distributed Shared Memory of GALAXY. EDMCC 1991: 52-61 - [c5]Pradeep Kumar Sinha, Kyu Sung Park, Xiaohua Jia, Kentaro Shimizu, Mamoru Maekawa:
Process Migration in the GALAXY Distributed Operating System. IPPS 1991: 611-618 - 1990
- [c4]Xiaohua Jia, Hirohiko Nakano, Kentaro Shimizu, Mamoru Maekawa:
Highly Concurrent Directory Management in the Galaxy Distributed System. ICDCS 1990: 416-423
1980 – 1989
- 1989
- [j1]Kentaro Shimizu, Eiichi Goto, Shuichi Ichikawa:
CPC (Cyclic Pipeline Computer) - An Architecture Suited for Josephson and Pipelined-Memory Machines. IEEE Trans. Computers 38(6): 825-832 (1989) - 1988
- [c3]Kentaro Shimizu, Mamoru Maekawa, Jun Hamano:
Hierarchical Object Groups in Distributed Operating Systems. ICDCS 1988: 18-24 - 1984
- [c2]Kentaro Shimizu:
A Portable Logic Simulation System for Development of FLATS Machine. RIMS Symposia on Software Science and Engineering 1984: 62-86 - 1982
- [c1]Eiichi Goto, Takashi Soma, N. Inada, Tetsuo Ida, Masanori Idesawa, Kei Hiraki, M. Suzuki, Kentaro Shimizu, B. Philipov:
Design of a Lisp Machine - FLATS. Symposium on LISP and Functional Programming 1982: 208-215
Coauthor Index
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