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Anna M. Ritz
Person information
- affiliation: Reed College, Portland, OR, USA
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2020 – today
- 2024
- [c22]Yancheng Liu
, Anna M. Ritz
:
Simplifying Signaling Pathway Reconstruction with Containerized Random Walk Algorithms. SIGCSE (2) 2024: 1884 - 2023
- [j20]Ananthan Nambiar
, Simon Liu, Maeve Heflin, John Malcolm Forsyth, Sergei Maslov, Mark Hopkins, Anna M. Ritz
:
Transformer Neural Networks for Protein Family and Interaction Prediction Tasks. J. Comput. Biol. 30(1): 95-111 (2023) - [j19]Hyundoo Jeong, Jose Lugo-Martinez
, Anna M. Ritz, Yijie Wang, Chi Zhang:
Special Issue Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC) Workshop (2022). J. Comput. Biol. 30(7): 737 (2023) - [j18]Tunç Basar Köse, Jiarong Li, Anna M. Ritz
:
Growing Directed Acyclic Graphs: Optimization Functions for Pathway Reconstruction Algorithms. J. Comput. Biol. 30(7): 814-828 (2023) - 2022
- [c21]Aysegul Bumin, Anna M. Ritz, Donna K. Slonim, Tamer Kahveci, Kejun Huang:
FiT: fiber-based tensor completion for drug repurposing. BCB 2022: 31:1-31:10 - 2021
- [j17]Heyuan Zeng, Jinbiao Zhang, Gabriel A. Preising, Tobias Rubel, Pramesh Singh, Anna M. Ritz
:
Graphery: interactive tutorials for biological network algorithms. Nucleic Acids Res. 49(Webserver-Issue): 257-262 (2021) - [j16]Elizabeth Leininger
, Kelly Shaw, Niema Moshiri
, Kelly Neiles
, Getiria Onsongo
, Anna M. Ritz
:
Ten simple rules for attending your first conference. PLoS Comput. Biol. 17(7) (2021) - [i3]Elizabeth Leininger
, Kelly Shaw, Niema Moshiri, Kelly Neiles, Getiria Onsongo, Anna M. Ritz:
Ten Simple Rules for Attending Your First Conference. CoRR abs/2101.11706 (2021) - 2020
- [j15]Oscar L. Rodriguez
, Anna M. Ritz
, Andrew J. Sharp, Ali Bashir:
MsPAC: a tool for haplotype-phased structural variant detection. Bioinform. 36(3): 922-924 (2020) - [j14]Zach Dinardo, Kiran Tomlinson
, Anna M. Ritz
, Layla Oesper:
Distance measures for tumor evolutionary trees. Bioinform. 36(7): 2090-2097 (2020) - [c20]Tobias Rubel, Anna M. Ritz:
Augmenting Signaling Pathway Reconstructions. BCB 2020: 1:1-1:10 - [c19]Ananthan Nambiar, Maeve Heflin, Simon Liu
, Sergei Maslov
, Mark Hopkins, Anna M. Ritz:
Transforming the Language of Life: Transformer Neural Networks for Protein Prediction Tasks. BCB 2020: 5:1-5:8 - [c18]Yuan Zhuang, Kara L. Cerveny
, Anna M. Ritz:
Prefix/Suffix Variation in Retinoic Acid Response Elements. BCB 2020: 74:1 - [c17]Heyuan Zeng, Anna M. Ritz:
Graphery: a Biological Network Algorithm Tutorial Webservice. BCB 2020: 75:1 - [c16]Gabriel A. Preising, Joshua J. Faber-Hammond, Suzy C. P. Renn, Anna M. Ritz:
A Protein-Protein Interactome for an African Cichlid. BCB 2020: 84:1 - [c15]Amy R. Lazarte, Anna M. Ritz:
Lowering the Barrier for Undergraduates to Learn about Computational Research through a Course-Based Conference Experience. RESPECT 2020: 1-4
2010 – 2019
- 2019
- [j13]Miriam Bern, Alexander King, Derek A. Applewhite, Anna M. Ritz
:
Network-based prediction of polygenic disease genes involved in cell motility. BMC Bioinform. 20-S(12): 313:1-313:13 (2019) - [j12]Ibrahim Youssef
, Jeffrey N. Law, Anna M. Ritz
:
Integrating protein localization with automated signaling pathway reconstruction. BMC Bioinform. 20-S(16): 505:1-505:15 (2019) - [j11]Nicholas Franzese
, Adam Groce, T. M. Murali, Anna M. Ritz
:
Hypergraph-based connectivity measures for signaling pathway topologies. PLoS Comput. Biol. 15(10) (2019) - [j10]Marika Swanberg, Ira Globus-Harris, Iris Griffith, Anna M. Ritz, Adam Groce, Andrew Bray:
Improved Differentially Private Analysis of Variance. Proc. Priv. Enhancing Technol. 2019(3): 310-330 (2019) - [c14]Amy R. Lazarte, Samuel B. Fey, Anna M. Ritz:
Modeling Phytoplankton Movement and Fitness in Lakes. BCB 2019: 530 - [c13]Alexander King, Ibrahim Youssef
, Anna M. Ritz:
Factors Affecting Network-Based Gene Prediction Across Diverse Diseases. BIBM 2019: 1920-1927 - [i2]Marika Swanberg, Ira Globus-Harris, Iris Griffith, Anna M. Ritz, Adam Groce, Andrew Bray:
Improved Differentially Private Analysis of Variance. CoRR abs/1903.00534 (2019) - 2018
- [c12]Miriam Bern, Alexander King, Derek A. Applewhite, Anna M. Ritz:
Network-Based Prediction of Polygenic Disease Genes Involved in Cell Motility: Extended Abstract. BCB 2018: 610-611 - [c11]Ibrahim Youssef
, Jeffrey N. Law, Anna M. Ritz:
Integrating Protein Localization with Automated Signaling Pathway Reconstruction. BIBM 2018: 163-168 - [c10]Zachary Campbell, Andrew Bray, Anna M. Ritz, Adam Groce:
Differentially Private ANOVA Testing. ICDIS 2018: 281-285 - [c9]Anna M. Ritz:
Programming the Central Dogma: An Integrated Unit on Computer Science and Molecular Biology Concepts. SIGCSE 2018: 239-244 - 2017
- [j9]Aditya Bharadwaj, Divit P. Singh, Anna M. Ritz
, Allison N. Tegge, Christopher L. Poirel, Pavel K. Brazhnik, Neil Adames, Kurt Luther
, Shiv D. Kale, Jean Peccoud
, John J. Tyson, T. M. Murali:
GraphSpace: stimulating interdisciplinary collaborations in network biology. Bioinform. 33(19): 3134-3136 (2017) - [j8]Anna M. Ritz
, Brendan Avent, T. M. Murali:
Pathway Analysis with Signaling Hypergraphs. IEEE ACM Trans. Comput. Biol. Bioinform. 14(5): 1042-1055 (2017) - [c8]Ibrahim Youssef
, Anna M. Ritz:
Breaking Ties in Weighted Interactomes. BCB 2017: 618 - [i1]Zachary Campbell, Andrew Bray, Anna M. Ritz, Adam Groce:
Differentially Private ANOVA Testing. CoRR abs/1711.01335 (2017) - 2016
- [c7]Barney Potter, James D. Fix, Anna M. Ritz:
Modeling Cell Signaling Networks with Prize-Collecting Subhypernetworks. BCB 2016: 503-504 - [c6]Karl Menzel, Suzy C. P. Renn, Anna M. Ritz:
Copy Number Variation and Adaptive Evolutionary Radiations across the African Cichlid phylogeny. BCB 2016: 505-506 - [c5]Nicole Ezell, Anna M. Ritz:
Reconstructing Neuronal Signaling Pathways With the Potential for Disruption in Schizophrenia. BCB 2016: 514-515 - 2014
- [j7]Anna M. Ritz
, Ali Bashir, Suzanne S. Sindi, David Hsu, Iman Hajirasouliha, Benjamin J. Raphael:
Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinform. 30(24): 3458-3466 (2014) - [c4]Anna M. Ritz, T. M. Murali:
Pathway analysis with signaling hypergraphs. BCB 2014: 249-258 - [c3]Craig Estep, Jaeil Yi, Anna M. Ritz, T. M. Murali:
GraphSpace: sharing and collaborating through networks on the web. BCB 2014: 631-632 - 2013
- [b1]Anna M. Ritz:
Algorithms for Identifying Structural Variants in Human Genomes. Brown University, USA, 2013 - 2012
- [j6]Layla Oesper, Anna M. Ritz
, Sarah J. Aerni, Ryan Drebin, Benjamin J. Raphael:
Reconstructing cancer genomes from paired-end sequencing data. BMC Bioinform. 13(S-6): S10 (2012) - 2011
- [j5]Anna M. Ritz
, Pamela L. Paris, Michael Ittmann, Colin C. Collins, Benjamin J. Raphael:
Detection of recurrent rearrangement breakpoints from copy number data. BMC Bioinform. 12: 114 (2011) - [c2]Benjamin J. Raphael, Suzanne S. Sindi, Anna M. Ritz, Ali Bashir:
Workshop: Characterization of structural variants with next generation DNA sequencing. ICCABS 2011: 275 - 2010
- [j4]Anna M. Ritz
, Ali Bashir
, Benjamin J. Raphael:
Structural variation analysis with strobe reads. Bioinform. 26(10): 1291-1298 (2010) - [j3]Deborah S. Gross, Robert Atlas
, Jeffrey Rzeszotarski, Emma Turetsky, Janara M. Christensen, Sami Benzaid, Jamie F. Olson, Thomas Smith
, Leah E. Steinberg, Jon Sulman, Anna M. Ritz, Benjamin J. Anderson, Catherine Nelson, David R. Musicant, Lei Chen, David C. Snyder, James J. Schauer:
Environmental chemistry through intelligent atmospheric data analysis. Environ. Model. Softw. 25(6): 760-769 (2010) - [j2]Trevor M. O'Brien, Anna M. Ritz
, Benjamin J. Raphael, David H. Laidlaw:
Gremlin: An Interactive Visualization Model for Analyzing Genomic Rearrangements. IEEE Trans. Vis. Comput. Graph. 16(6): 918-926 (2010)
2000 – 2009
- 2009
- [j1]Anna M. Ritz
, Gregory Shakhnarovich, Arthur R. Salomon, Benjamin J. Raphael:
Discovery of phosphorylation motif mixtures in phosphoproteomics data. Bioinform. 25(1): 14-21 (2009) - 2006
- [c1]Benjamin J. Anderson, Deborah S. Gross, David R. Musicant, Anna M. Ritz, Thomas G. Smith
, Leah E. Steinberg:
Adapting K-Medians to Generate Normalized Cluster Centers. SDM 2006: 165-175
Coauthor Index
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last updated on 2024-05-08 20:58 CEST by the dblp team
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