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Andrey Rzhetsky
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2020 – today
- 2023
- [j31]Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori
, Rabab Alomairy
, Aniello Esposito, Hatem Ltaief
, Chikashi Terao
, Masato Akiyama, Koichi Matsuda, David E. Keyes
, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao
, Andrey Rzhetsky:
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nat. Comput. Sci. 3(5): 403-417 (2023) - [j30]Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori
, Rabab Alomairy
, Aniello Esposito, Hatem Ltaief
, Chikashi Terao
, Masato Akiyama, Koichi Matsuda, David E. Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J. Cox, James A. Evans, Xin Gao, Andrey Rzhetsky:
Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nat. Comput. Sci. 3(7): 658 (2023) - 2022
- [j29]Alexander V. Belikov
, Andrey Rzhetsky, James A. Evans
:
Prediction of robust scientific facts from literature. Nat. Mach. Intell. 4(5): 445-454 (2022) - [j28]Jonathan M. Matthews
, Brooke Schuster, Sara Saheb Kashaf, Ping Liu
, Rakefet Ben-Yishay, Dana Ishay-Ronen
, Evgeny Izumchenko, Le Shen, Christopher R. Weber
, Margaret Bielski, Sonia S. Kupfer, Mustafa Bilgic
, Andrey Rzhetsky, Savas Tay:
OrganoID: A versatile deep learning platform for tracking and analysis of single-organoid dynamics. PLoS Comput. Biol. 18(11): 1010584 (2022) - 2021
- [j27]Yanan Long
, Qi Chen
, Henrik Larsson
, Andrey Rzhetsky
:
Observable variations in human sex ratio at birth. PLoS Comput. Biol. 17(12) (2021) - [c20]Chao Zhang
, Jaswanth K. Yella, Yu Huang
, Xiaoye Qian, Sergei Petrov, Andrey Rzhetsky, Sthitie Bom:
Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word. IEEE BigData 2021: 1999-2008 - [i6]Chao Zhang, Hanxin Zhang, Atif Ali Khan, Ted Kim, Olasubomi Omoleye, Oluwamayomikun Abiona, Amy Lehman, Christopher O. Olopade, Olufunmilayo I. Olopade, Pedro Lopes, Andrey Rzhetsky:
Lightweight Mobile Automated Assistant-to-physician for Global Lower-resource Areas. CoRR abs/2110.15127 (2021) - [i5]Chao Zhang, Jaswanth K. Yella, Yu Huang, Xiaoye Qian, Sergei Petrov, Andrey Rzhetsky, Sthitie Bom:
Soft Sensing Transformer: Hundreds of Sensors are Worth a Single Word. CoRR abs/2111.05973 (2021) - 2020
- [j26]Hanxin Zhang
, Torsten Dahlén, Atif Ali Khan
, Gustaf Edgren
, Andrey Rzhetsky
:
Measurable health effects associated with the daylight saving time shift. PLoS Comput. Biol. 16(6) (2020) - [i4]Alexander V. Belikov, Andrey Rzhetsky, James A. Evans:
Detecting signal from science: The structure of research communities and prior knowledge improves prediction of genetic regulatory experiments. CoRR abs/2008.09985 (2020)
2010 – 2019
- 2019
- [c19]Hrant Khachatrian, Lilit Nersisyan
, Karen Hambardzumyan, Tigran Galstyan, Anna Hakobyan, Arsen Arakelyan, Andrey Rzhetsky, Aram Galstyan:
BioRelEx 1.0: Biological Relation Extraction Benchmark. BioNLP@ACL 2019: 176-190 - 2018
- [j25]Ji-Sung Kim
, Xin Gao
, Andrey Rzhetsky
:
RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning. PLoS Comput. Biol. 14(4) (2018) - [i3]Valentin Danchev
, Andrey Rzhetsky, James A. Evans:
Centralized "big science" communities more likely generate non-replicable results. CoRR abs/1801.05042 (2018) - 2017
- [i2]Ji-Sung Kim, Andrey Rzhetsky:
RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning. CoRR abs/1707.01623 (2017) - 2016
- [c18]Andrey Rzhetsky:
The Big Mechanism Program: Changing How Science Is Done. DAMDID/RCDL 2016: 1-2 - 2014
- [j24]Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky
, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen
, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou:
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 42(Webserver-Issue): 137-146 (2014) - [j23]Andrey Rzhetsky
, Steven C. Bagley
, Kanix Wang
, Christopher S. Lyttle, Edwin H. Cook Jr., Russ B. Altman
, Robert D. Gibbons:
Environmental and State-Level Regulatory Factors Affect the Incidence of Autism and Intellectual Disability. PLoS Comput. Biol. 10(3) (2014) - [j22]David R. Blair
, Kanix Wang
, Svetlozar Nestorov, James A. Evans, Andrey Rzhetsky
:
Quantifying the Impact and Extent of Undocumented Biomedical Synonymy. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j21]Larisa N. Soldatova, Andrey Rzhetsky, Kurt De Grave, Ross D. King:
Representation of probabilistic scientific knowledge. J. Biomed. Semant. 4(S-1): S7 (2013) - [i1]Jacob G. Foster, Andrey Rzhetsky, James A. Evans:
Tradition and Innovation in Scientists' Research Strategies. CoRR abs/1302.6906 (2013) - 2012
- [c17]Shi Yu, Robert Grossman, Andrey Rzhetsky:
Global and Local Approach of Part-of-Speech Tagging for Large Corpora. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text 2012 - 2011
- [j20]Larisa N. Soldatova, Andrey Rzhetsky:
Representation of research hypotheses. J. Biomed. Semant. 2(S-2): S9 (2011) - [j19]Lixia Yao, Anna Divoli, Ilya Mayzus, James A. Evans, Andrey Rzhetsky
:
Benchmarking Ontologies: Bigger or Better? PLoS Comput. Biol. 7(1) (2011) - [j18]Andrey Rzhetsky
, James A. Evans:
War of Ontology Worlds: Mathematics, Computer Code, or Esperanto? PLoS Comput. Biol. 7(9) (2011) - [j17]Anna Divoli, Eneida A. Mendonça, James A. Evans, Andrey Rzhetsky
:
Conflicting Biomedical Assumptions for Mathematical Modeling: The Case of Cancer Metastasis. PLoS Comput. Biol. 7(10) (2011) - [c16]Andrey Rzhetsky
:
Understanding Etiology of Complex Neurodevelopmental Disorders: Two Approaches. AIME 2011: 1 - [c15]Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky
:
A distributed look-up architecture for text mining applications using mapreduce. HPDC 2011: 279-280 - [c14]Atilla Soner Balkir, Ian T. Foster, Andrey Rzhetsky
:
A distributed look-up architecture for text mining applications using MapReduce. SC 2011: 59:1-59:11 - [e2]Robert Grossman, Andrey Rzhetsky, Sun Kim, Wei Wang:
ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 11, Chicago, IL, USA - July 31 - August 03, 2011. ACM 2011, ISBN 978-1-4503-0796-3 [contents] - 2010
- [c13]Sonjia Waxmonsky, John Goldsmith, Andrey Rzhetsky
:
Discovering and Counting Biomedical Verbs. ICMLA 2010: 975-978
2000 – 2009
- 2009
- [j16]Andrey Rzhetsky
, Hagit Shatkay, W. John Wilbur:
How to Get the Most out of Your Curation Effort. PLoS Comput. Biol. 5(5) (2009) - [j15]Andrey Rzhetsky
, Michael R. Seringhaus, Mark B. Gerstein:
Getting Started in Text Mining: Part Two. PLoS Comput. Biol. 5(7) (2009) - [j14]Ivan Iossifov, Raul Rodriguez-Esteban
, Ilya Mayzus, Kathleen J. Millen
, Andrey Rzhetsky
:
Looking at Cerebellar Malformations through Text-Mined Interactomes of Mice and Humans. PLoS Comput. Biol. 5(11) (2009) - 2008
- [j13]Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky
, W. John Wilbur:
Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users. Bioinform. 24(18): 2086-2093 (2008) - [j12]Lixia Yao, Andrey Rzhetsky:
Quantitative systems-level determinants of drug targets. BMC Bioinform. 9(S-10) (2008) - 2006
- [j11]W. John Wilbur, Andrey Rzhetsky
, Hagit Shatkay:
New directions in biomedical text annotation: definitions, guidelines and corpus construction. BMC Bioinform. 7: 356 (2006) - [j10]Raul Rodriguez-Esteban
, Ivan Iossifov, Andrey Rzhetsky
:
Imitating Manual Curation of Text-Mined Facts in Biomedicine. PLoS Comput. Biol. 2(9) (2006) - [c12]Andrey Rzhetsky:
Mining biomedical texts for disease-related pathways. BioNLP@NAACL-HLT 2006: 81 - 2005
- [j9]Mark Borodovsky, Andrey Rzhetsky
, Dmitrij Frishman:
The Fifth Georgia Tech - Oak Ridge National Laboratory International Conference in Bioinformatics: in silico Biology, Computational Genomics and Evolutionary Biology. Bioinform. 21(S3): 1 (2005) - 2004
- [j8]Ivan Iossifov, Michael Krauthammer
, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader
, Kevin P. White, Andrey Rzhetsky
:
Probabilistic inference of molecular networks from noisy data sources. Bioinform. 20(8): 1205-1213 (2004) - [j7]Andrey Rzhetsky
, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer
, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur:
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. J. Biomed. Informatics 37(1): 43-53 (2004) - 2003
- [j6]Shawn M. Gomez
, William Stafford Noble, Andrey Rzhetsky
:
Learning to predict protein-protein interactions from protein sequences. Bioinform. 19(15): 1875-1881 (2003) - 2002
- [j5]Carol Friedman, Pauline Kra, Andrey Rzhetsky
:
Two biomedical sublanguages: a description based on the theories of Zellig Harris. J. Biomed. Informatics 35(4): 222-235 (2002) - [j4]Hong Yu, Vasileios Hatzivassiloglou, Andrey Rzhetsky
, W. John Wilbur:
Automatically identifying gene/protein terms in MEDLINE abstracts. J. Biomed. Informatics 35(5-6): 322-330 (2002) - [c11]Hong Yu, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky, W. John Wilbur:
Automatic extraction of gene and protein synonyms from MEDLINE and journal articles. AMIA 2002 - [c10]Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky:
Of truth and pathways: chasing bits of information through myriads of articles. ISMB 2002: 249-257 - [c9]Shawn M. Gomez, Andrey Rzhetsky:
Towards the Prediction of Complete Protein-Protein Interaction Networks. Pacific Symposium on Biocomputing 2002: 413-424 - 2001
- [j3]Andrey Rzhetsky
, Shawn M. Gomez:
Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. Bioinform. 17(10): 988-996 (2001) - [c8]Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman:
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics 2001: 2-5 - [c7]Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky:
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles. ISMB (Supplement of Bioinformatics) 2001: 74-82 - [c6]Vasileios Hatzivassiloglou, Pablo Ariel Duboué, Andrey Rzhetsky:
Disambiguating proteins, genes, and RNA in text: a machine learning approach. ISMB (Supplement of Bioinformatics) 2001: 97-106 - [c5]Andrey Rzhetsky, Pavel Morozov:
Markov Chain Monte Carlo Computation of Confidence Intervals for Substitution-Rate Variation in Proteins. Pacific Symposium on Biocomputing 2001: 203-214 - 2000
- [j2]Andrey Rzhetsky
, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer
, Sabina H. Kaplan, Pauline Kra, James J. Russo, Carol Friedman:
A knowledge model for analysis and simulation of regulatory networks. Bioinform. 16(12): 1120-1128 (2000) - [c4]Michael Krauthammer, Andrey Rzhetsky, Pavel Morozov, Carol Friedman:
Using BLAST, A DNA and Protein Sequence Comparison Tool, for Finding Gene and Protein Names in Journal Articles. AMIA 2000
1990 – 1999
- 1999
- [c3]Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Pauline Kra, Carol Friedman:
A Knowledge Model for Analysis and Simulation of Regulatory Based on Information in Electronic Publications. AMIA 1999 - [c2]Hong Yu, Carol Friedman, Andrey Rzhetsky, Pauline Kra:
Representing genomic knowledge in the UMLS semantic network. AMIA 1999 - 1997
- [e1]Boris G. Mirkin, Fred R. McMorris, Fred S. Roberts, Andrey Rzhetsky:
Mathematical Hierarchies and Biology, Proceedings of a DIMACS Workshop, November 13-15, 1996. DIMACS Series in Discrete Mathematics and Theoretical Computer Science 37, DIMACS/AMS 1997, ISBN 978-0-8218-0762-0 [contents] - 1996
- [c1]Andrey Rzhetsky, Francisco José Ayala, Lily C. Hsu, Cheng Chang, Akira Yoshida:
Fitting models of intron evolution to aldehyde dehydrogenase data. Mathematical Hierarchies and Biology 1996: 95-110 - 1994
- [j1]Andrey Rzhetsky
, Masatoshi Nei:
METREE: a program package for inferring and testing minimum-evolution trees. Comput. Appl. Biosci. 10(4): 409-412 (1994)
Coauthor Index
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last updated on 2024-08-16 18:33 CEST by the dblp team
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