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Clifford A. Meyer
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2020 – today
- 2023
- [j14]Sehi L'Yi
, Mark S. Keller, Ariaki Dandawate, Len Taing, Chen-Hao Chen, Myles Brown
, Clifford A. Meyer, Nils Gehlenborg
:
Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data. Bioinform. 39(2) (2023) - 2020
- [j13]Rongbin Zheng, Xin Dong
, Changxin Wan
, Xiaoying Shi, Xiaoyan Zhang, Clifford A. Meyer:
Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data. Quant. Biol. 8(3): 267-276 (2020)
2010 – 2019
- 2019
- [j12]Rongbin Zheng, Changxin Wan
, Shenglin Mei, Qian Qin
, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown
, Xiaoyan Zhang, Clifford A. Meyer, Xiaole Shirley Liu
:
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis. Nucleic Acids Res. 47(Database-Issue): D729-D735 (2019) - [j11]Shaojuan Li, Changxin Wan
, Rongbin Zheng, Jingyu Fan
, Xin Dong
, Clifford A. Meyer, Xiaole Shirley Liu:
Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks. Nucleic Acids Res. 47(Webserver-Issue): W206-W211 (2019) - 2018
- [j10]Chen-Hao Chen, Tengfei Xiao, Han Xu, Peng Jiang
, Clifford A. Meyer, Wei Li
, Myles Brown, Xiaole Shirley Liu:
Improved design and analysis of CRISPR knockout screens. Bioinform. 34(23): 4095-4101 (2018) - 2017
- [j9]Shenglin Mei, Qian Qin
, Qiu Wu, Hanfei Sun, Rongbin Zheng, Chongzhi Zang
, Muyuan Zhu, Jiaxin Wu, Xiaohui Shi, Len Taing, Tao Liu
, Myles Brown, Clifford A. Meyer, Xiaole Shirley Liu:
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse. Nucleic Acids Res. 45(Database-Issue): D658-D662 (2017) - 2016
- [j8]Qian Qin
, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu
, Chongzhi Zang
, Han Xu, Yiwen Chen, Clifford A. Meyer, Yong Zhang
, Myles Brown, Henry Long:
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline. BMC Bioinform. 17: 404 (2016) - 2012
- [j7]Jianxing Feng, Clifford A. Meyer, Qian Wang, Jun S. Liu
, Xiaole Shirley Liu, Yong Zhang
:
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data. Bioinform. 28(21): 2782-2788 (2012) - 2011
- [j6]Clifford A. Meyer, Housheng H. He
, Myles Brown
, Xiaole Shirley Liu:
BINOCh: binding inference from nucleosome occupancy changes. Bioinform. 27(13): 1867-1868 (2011) - [j5]Qingyi Cao, Meng Zhou
, Xujun Wang
, Clifford A. Meyer, Yong Zhang
, Zhi Chen, Cheng Li, Xiaole Shirley Liu:
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data. Nucleic Acids Res. 39(Database-Issue): 968-974 (2011)
2000 – 2009
- 2005
- [j4]Christodoulos A. Floudas, Ioannis G. Akrotirianakis, S. Caratzoulas
, Clifford A. Meyer, Josef Kallrath:
Global optimization in the 21st century: Advances and challenges. Comput. Chem. Eng. 29(6): 1185-1202 (2005) - [j3]Clifford A. Meyer, Christodoulos A. Floudas:
Convex Underestimation of Twice Continuously Differentiable Functions by Piecewise Quadratic Perturbation: Spline αBB Underestimators. J. Glob. Optim. 32(2): 221-258 (2005) - [j2]Clifford A. Meyer, Christodoulos A. Floudas:
Convex envelopes for edge-concave functions. Math. Program. 103(2): 207-224 (2005) - [c1]Wei Li, Clifford A. Meyer, Xiaole Shirley Liu:
A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. ISMB (Supplement of Bioinformatics) 2005: 274-282 - 2004
- [j1]Clifford A. Meyer, Christodoulos A. Floudas:
Trilinear Monomials with Mixed Sign Domains: Facets of the Convex and Concave Envelopes. J. Glob. Optim. 29(2): 125-155 (2004)
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