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Stefano Toppo
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2020 – today
- 2023
- [j16]Federico Bianca, Emilio Ispano, Ermanno Gazzola, Enrico Lavezzo, Paolo Fontana, Stefano Toppo
:
FunTaxIS-lite: a simple and light solution to investigate protein functions in all living organisms. Bioinform. 39(9) (2023) - 2020
- [j15]Michele Berselli
, Enrico Lavezzo, Stefano Toppo
:
QPARSE: searching for long-looped or multimeric G-quadruplexes potentially distinctive and druggable. Bioinform. 36(2): 393-399 (2020)
2010 – 2019
- 2018
- [j14]Michele Berselli
, Enrico Lavezzo
, Stefano Toppo
:
NeSSie: a tool for the identification of approximate DNA sequence symmetries. Bioinform. 34(14): 2503-2505 (2018) - [j13]Francesco Sambo, Francesca Finotello
, Enrico Lavezzo
, Giacomo Baruzzo
, Giulia Masi, Elektra Peta, Marco Falda, Stefano Toppo, Luisa Barzon, Barbara Di Camillo
:
Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene. BMC Bioinform. 19(1): 343:1-343:10 (2018) - [j12]Enrico Lavezzo
, Michele Berselli
, Ilaria Frasson
, Rosalba Perrone
, Giorgio Palù, Alessandra R. Brazzale, Sara N. Richter
, Stefano Toppo
:
G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide. PLoS Comput. Biol. 14(12) (2018) - 2017
- [j11]Luca Bianco
, Samantha Riccadonna
, Enrico Lavezzo
, Marco Falda, Elide Formentin, Duccio Cavalieri, Stefano Toppo
, Paolo Fontana:
Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms. Bioinform. 33(3): 453-455 (2017) - 2014
- [j10]Marco Falda
, Paolo Fontana, Luisa Barzon
, Stefano Toppo
, Enrico Lavezzo
:
keeSeek: searching distant non-existing words in genomes for PCR-based applications. Bioinform. 30(18): 2662-2664 (2014) - [j9]Francesca Finotello
, Enrico Lavezzo
, Luca Bianco
, Luisa Barzon
, Paolo Mazzon, Paolo Fontana, Stefano Toppo
, Barbara Di Camillo:
Reducing bias in RNA sequencing data: a novel approach to compute counts. BMC Bioinform. 15(S-1): S7 (2014) - 2013
- [j8]Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova
, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena
, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo
, Amanda May
, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney
, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn
, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder
, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo
, Peter Uetz
, Kenneth Verheggen
, Brynn H. Voy, Louise Warnich
, Steven W. Wilhelm
, Gregory Yandl:
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1(4): 196-201 (2013) - 2012
- [j7]Francesca Finotello
, Enrico Lavezzo
, Paolo Fontana, Denis Peruzzo
, Alessandro Albiero, Luisa Barzon
, Marco Falda
, Barbara Di Camillo, Stefano Toppo
:
Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data. Briefings Bioinform. 13(3): 269-280 (2012) - [j6]Marco Falda
, Stefano Toppo
, Alessandro Pescarolo, Enrico Lavezzo
, Barbara Di Camillo, Andrea Facchinetti, Elisa Cilia, Riccardo Velasco
, Paolo Fontana:
Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms. BMC Bioinform. 13(S-4): S14 (2012)
2000 – 2009
- 2006
- [j5]Ingolf Sommer, Stefano Toppo
, Oliver Sander, Thomas Lengauer, Silvio C. E. Tosatto
:
Improving the quality of protein structure models by selecting from alignment alternatives. BMC Bioinform. 7: 364 (2006) - 2005
- [j4]Paolo Fontana, Eckart Bindewald, Stefano Toppo
, Riccardo Velasco
, Giorgio Valle
, Silvio C. E. Tosatto
:
The SSEA server for protein secondary structure alignment. Bioinform. 21(3): 393-395 (2005) - 2003
- [j3]Stefano Toppo
, Nicola Cannata, Paolo Fontana, Chiara Romualdi
, Paolo Laveder, Emanuela Bertocco, Gerolamo Lanfranchi, Giorgio Valle
:
TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts. Bioinform. 19(5): 661-662 (2003) - 2002
- [j2]Nicola Cannata, Stefano Toppo, Chiara Romualdi
, Giorgio Valle:
Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices. Bioinform. 18(8): 1102-1108 (2002) - [j1]Rehannah H. A. Borup, Stefano Toppo
, Yi-Wen Chen, Tanya M. Teslovich, Gerolamo Lanfranchi, Giorgio Valle
, Eric P. Hoffman
:
Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs. BMC Bioinform. 3: 33 (2002)
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last updated on 2024-04-25 05:56 CEST by the dblp team
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