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Matteo Brilli
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2010 – 2019
- 2016
- [j9]Marco Moretto, Paolo Sonego, Nicolas Dierckxsens, Matteo Brilli, Luca Bianco, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Marco Galardini, Chiara Romualdi, Kris Laukens, Julio Collado-Vides, Pieter Meysman, Kristof Engelen:
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses. Nucleic Acids Res. 44(Database-Issue): 620-623 (2016) - 2015
- [j8]Marco Galardini, Matteo Brilli, Giulia Spini, Matteo Rossi, Bianca Roncaglia, Alessia Bani, Manuela Chiancianesi, Marco Moretto, Kristof Engelen, Giovanni Bacci, Francesco Pini, Emanuele G. Biondi, Marco Bazzicalupo, Alessio Mengoni:
Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome. PLoS Comput. Biol. 11(9) (2015) - 2011
- [j7]Sara Berthoumieux, Matteo Brilli, Hidde de Jong, Daniel Kahn, Eugenio Cinquemani:
Identification of metabolic network models from incomplete high-throughput datasets. Bioinform. 27(13): 186-195 (2011) - 2010
- [j6]Matteo Brilli, Marco Fondi, Renato Fani, Alessio Mengoni, Lorenzo Ferri, Marco Bazzicalupo, Emanuele G. Biondi:
The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis. BMC Syst. Biol. 4: 52 (2010)
2000 – 2009
- 2008
- [j5]Matteo Brilli, Renato Fani, Pietro Liò:
Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes. Briefings Bioinform. 9(1): 34-45 (2008) - [j4]Matteo Brilli, Alessio Mengoni, Marco Fondi, Marco Bazzicalupo, Pietro Liò, Renato Fani:
Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network. BMC Bioinform. 9 (2008) - [c1]Pietro Liò, Matteo Brilli, Renato Fani:
Topological Metrics in Blast Data Mining: Plasmid and Nitrogen-Fixing Proteins Case Studies. BIRD 2008: 207-220 - 2007
- [j3]Matteo Brilli, Renato Fani, Pietro Liò:
MotifScorer: using a compendium of microarrays to identify regulatory motifs. Bioinform. 23(4): 493-495 (2007) - [j2]Marco Fondi, Matteo Brilli, Renato Fani:
On the origin and evolution of biosynthetic pathways: integrating microarray data with structure and organization of the Common Pathway genes. BMC Bioinform. 8(S-1) (2007) - [j1]Matteo Ramazzotti, Matteo Brilli, Renato Fani, Giampaolo Manao, Donatella Degl'Innocenti:
The CAI Analyser Package: Inferring Gene Expressivity from Raw Genomic Data. Silico Biol. 7(4-5): 507-526 (2007)
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