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2020 – today
- 2024
[j8]Tsuyoshi Esaki, Tomoki Yonezawa, Kazuyoshi Ikeda:
A new workflow for the effective curation of membrane permeability data from open ADME information. J. Cheminformatics 16(1): 30 (2024)- 2023
- [j7]Yugo Shimizu, Masateru Ohta
, Shoichi Ishida, Kei Terayama, Masanori Osawa, Teruki Honma, Kazuyoshi Ikeda:
AI-driven molecular generation of not-patented pharmaceutical compounds using world open patent data. J. Cheminformatics 15(1): 120 (2023) - [j6]Yuko Tsuchiya, Tomoki Yonezawa, Yu Yamamori, Hiroko Inoura, Masanori Osawa, Kazuyoshi Ikeda, Kentaro Tomii:
PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins. J. Chem. Inf. Model. 63(23): 7578-7587 (2023)
2010 – 2019
- 2015
- [j5]Jun-Ichi Ito, Kazuyoshi Ikeda, Kazunori D. Yamada, Kenji Mizuguchi, Kentaro Tomii:
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs. Nucleic Acids Res. 43(Database-Issue): 392-398 (2015) - [j4]Nozomi Nagano, Naoko Nakayama, Kazuyoshi Ikeda, Masaru Fukuie, Kiyonobu Yokota, Takuo Doi, Tsuyoshi Kato, Kentaro Tomii:
EzCatDB: the enzyme reaction database, 2015 update. Nucleic Acids Res. 43(Database-Issue): 453-458 (2015) - 2014
- [j3]Kazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley:
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies. Bioinform. 30(22): 3279-3280 (2014)
2000 – 2009
- 2009
- [j2]Nobuyoshi Sugaya, Kazuyoshi Ikeda:
Assessing the druggability of protein-protein interactions by a supervised machine-learning method. BMC Bioinform. 10: 263 (2009) - 2003
- [j1]Kazuyoshi Ikeda, Oxana V. Galzitskaya, Haruki Nakamura, Junichi Higo:
beta-Hairpins, alpha-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal beta-hairpin of SH3 domain. J. Comput. Chem. 24(3): 310-318 (2003)
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