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ORCIDKamal Al-Nasr
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2020 – today
- 2021
[c10]Ali Sekmen, Kamal Al-Nasr, Christopher Jones:
Subspace Modeling for Classification of Protein Secondary Structure Elements from Cα Trace. BIBM 2021: 72-79
2010 – 2019
- 2018
- [j10]Jing He, Kamal Al-Nasr, Weitao Sun, Yonggang Lu:
Special IssuePreface: The 9th Computational Structural Bioinformatics Workshop. J. Comput. Biol. 25(1): 1-2 (2018) - [j9]Kamal Al-Nasr, Christopher Jones, Feras Yousef
, Ruba Jebril:
PEM-fitter: A Coarse-Grained Method to Validate Protein Candidate Models. J. Comput. Biol. 25(1): 21-32 (2018) - 2017
- [j8]Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al-Nasr, Jing He:
An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images. IEEE ACM Trans. Comput. Biol. Bioinform. 14(3): 578-586 (2017) - [c9]Kamal Al-Nasr, Feras Yousef, Christopher Jones, Ruba Jebril:
Geometry Analysis for Protein Secondary Structures Matching Problem. BCB 2017: 716-721 - 2016
- [j7]Kamal Al-Nasr, Jing He:
Constrained cyclic coordinate descent for cryo-EM images at medium resolutions: beyond the protein loop closure problem. Robotica 34(8): 1777-1790 (2016) - [c8]Kamal Al-Nasr, Christopher Jones, Bashar Aboona, Abdulrahman Alanazi:
An efficient method for validating protein models using electron microscopy data. BIBM 2016: 1726-1731 - 2015
- [c7]Kamal Al-Nasr, Jing He:
Deriving Protein Backbone Using Traces Extracted from Density Maps at Medium Resolutions. ISBRA 2015: 1-11 - 2014
- [j6]Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He:
Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 11(2): 419-430 (2014) - [c6]Kamal Al-Nasr, Jing He:
Construction of protein backbone pieces using segment-based FBCCD and Cryo-EM skeleton. BCB 2014: 711-716 - 2013
- [j5]Kamal Al-Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, Jing He:
Intensity-Based Skeletonization of CryoEM Gray-Scale Images Using a True Segmentation-Free Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 10(5): 1289-1298 (2013) - [c5]Kamal Al-Nasr, Lin Chen, Desh Ranjan, Mohammad Zubair, Dong Si, Jing He:
A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps. BCB 2013: 749 - [c4]Kamal Al-Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge:
A Graph Approach to Bridge the Gaps in Volumetric Electron Cryo-microscopy Skeletons. ISBRA 2013: 211-223 - 2012
- [j4]Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He:
Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data. J. Bioinform. Comput. Biol. 10(3) (2012) - [c3]Kamal Al-Nasr, Lin Chen, Dong Si, Desh Ranjan, Mohammad Zubair, Jing He:
Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions. BCB 2012: 490-497 - [c2]Andrew McKnight, Kamal Al-Nasr, Dong Si, Andrey N. Chernikov, Nikos Chrisochoides, Jing He:
CryoEM skeleton length estimation using a decimated curve. BIBM Workshops 2012: 109-113 - 2011
- [j3]Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He:
Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph. J. Bioinform. Comput. Biol. 9(3): 415-430 (2011) - [c1]Abhishek Biswas, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He:
A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors. BIBM 2011: 160-163 - 2010
- [j2]Kamal Al-Nasr, Weitao Sun, Jing He:
Structure prediction for the helical skeletons detected from the low resolution protein density map. BMC Bioinform. 11(S-1): 44 (2010)
2000 – 2009
- 2009
- [j1]Kamal Al-Nasr, Jing He:
An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent. Int. J. Data Min. Bioinform. 3(3): 346-361 (2009)
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