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Hesham Ali 0001
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- affiliation: University of Nebraska Omaha, USA
Other persons with the same name
- Hesham Ali 0002
— Nile University, Center for Informatics Science, Giza, Egypt
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2020 – today
- 2025
- [d2]Amgad Abdallah
, Andreas Pester
, Maha Muttardi
, Frédéric Andrès
, Shihori Tanabe
, Nicolas Grenèche
, Hesham H. Ali
:
Cheby-KANs Dataset. IEEE DataPort, 2025 - 2024
- [j31]Amgad Abdallah Mahmoud
, Nada Adel Alyan, Ahmed Elkerdawy
, Shihori Tanabe
, Frédéric Andrès, Andreas Pester
, Hesham H. Ali
:
Geom-SAC: Geometric Multi-Discrete Soft Actor Critic With Applications in De Novo Drug Design. IEEE Access 12: 45519-45529 (2024) - [c156]Prasad Chetti, Hesham Ali:
On the Robustness of Correlation Network Models in Predicting the Safety of Bridges. COMPLEXIS 2024: 107-113 - [c155]Eleuterio Lillo Portero, Hesham Ali:
A Graph-Theoretic Approach for Examining Team Communities in Sports Transfer Markets. HICSS 2024: 854-863 - [c154]Saiteja Malisetty
, Elham Rastegari
, Ka-Chun Siu
, Hesham H. Ali
:
Threshold Optimization in Constructing Comparative Network Models: A Case Study on Enhancing Laparoscopic Surgical Skill Assessment with Edge Betweenness. ICCS (6) 2024: 28-42 - [c153]Suyeon Kim, Ishwor Thapa, Hesham H. Ali:
A Robust Network Model for Studying Microbiomes in Precision Agriculture Applications. ICCS (6) 2024: 58-71 - [c152]Rama Krishna Thelagathoti
, Hesham H. Ali:
Mobility-Based Community Analysis for Early Detection of Complex Psychiatric Disorders. ICHI 2024: 205-213 - [c151]Saiteja Malisetty, Elham Rastegari, Ka-Chun Siu, Hesham Ali:
Bridging Learning Gaps in Computing Education: A Focus on Assessing the Impact of Accessing Educational Material under Different Teaching Modalities. ICIS 2024 - 2023
- [c150]Rama Krishna Thelagathoti
, Hesham H. Ali:
A Network Analysis Approach for the Classification of Psychiatric Disorders Using Multi-Modal Data. BIBM 2023: 2831-2836 - [c149]Rama Krishna Thelagathoti, Hesham H. Ali:
A Correlation Network Model for Analyzing Mobility Data in Depression Related Studies. HEALTHINF 2023: 416-423 - [c148]Amgad Abdallah Mahmoud
, Nada Adel Alyan
, Ahmed Elkerdawy
, Shihori Tanabe
, Frédéric Andrès, Andreas Pester
, Hesham Ali
:
A New Graph-Based Reinforcement Learning Environment for Targeted Molecular Generation and Optimization✱. ICSIE 2023: 52-57 - [c147]Nicolas Grenèche, Frédéric Andrès, Shihori Tanabe, Andreas Pester, Hesham H. Ali, Amgad A. Mahmoud, Dominique Bascle:
Leverage Data Security Policies Complexity for Users: An End-to-End Storage Service Management in the Cloud Based on ABAC Attributes. MLN 2023: 199-217 - [e10]Hesham Ali, Ning Deng, Ana Fred, Hugo Gamboa:
Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2023, Volume 3: BIOINFORMATICS, Lisbon, Portugal, February 16-18, 2023. SCITEPRESS 2023, ISBN 978-989-758-631-6 [contents] - [d1]Amgad A. Mahmoud
, Frédéric Andrès
, Andreas Pester
, Shihori Tanabe
, Hesham Ali
, Nada Adel:
Predicting drug likeness and molecular activity. IEEE DataPort, 2023 - 2022
- [j30]Elham Rastegari, Hesham Ali, Vivien Marmelat:
Detection of Parkinson's Disease Using Wrist Accelerometer Data and Passive Monitoring. Sensors 22(23): 9122 (2022) - [c146]Suyeon Kim, Ishwor Thapa, Hesham Ali:
A multi-omics graph database for data integration and knowledge extraction. BCB 2022: 56:1-56:6 - [c145]Rama Krishna Thelagathoti
, Hesham H. Ali:
A Data-Driven Approach for the Analysis of Behavioral Disorders With a Focus on Classification and Severity Estimation. BIBM 2022: 821-825 - [c144]Rama Krishna Thelagathoti, Hesham H. Ali:
The Comparison of Various Correlation Network Models in Studying Mobility Data for the Analysis of Depression Episodes. BIOSIGNALS 2022: 200-207 - [c143]Zahra Hatami, Prasad Chetti, Hesham Ali, David Volkman:
A Novel Population Analysis Approach for Analyzing Financial Markets under Crises - 2008 Economic crash and Covid-19 pandemic. HICSS 2022: 1-10 - [c142]Rama Krishna Thelagathoti
, Saiteja Malisetty, Hesham H. Ali:
Analyzing Walking and Driving Behavior Across Different Age Groups Using Population Analysis and Correlation Networks. ICCSPA 2022: 1-6 - [c141]Zahra Hatami, Hesham Ali, David Volkman, Prasad Chetti:
A New Approach for Analyzing Financial Markets using Correlation Networks and Population Analysis. ICEIS (1) 2022: 569-577 - 2021
- [j29]Ishwor Thapa, Hesham Ali:
A Multiomics Graph Database System for Biological Data Integration and Cancer Informatics. J. Comput. Biol. 28(2): 209-219 (2021) - [c140]William Gasper
, Kathryn M. Cooper, Nathan Cornelius, Hesham Ali:
Parallel Planar Approximation for Large Networks. BIBM 2021: 1948-1955 - 2020
- [j28]Qianran Li, Dario Ghersi, Ishwor Thapa, Ling Zhang, Hesham Ali, Kate Cooper:
Measurement of structural change in co-expression networks from cancer gene expression data. Int. J. Data Min. Bioinform. 24(4): 291-305 (2020) - [j27]Sean West
, Hesham Ali, Dario Ghersi
:
NEEP: null empirically estimated p-values for high-throughput molecular survival analysis. J. Open Source Softw. 5(52): 2044 (2020) - [c139]William Gasper
, Kathryn M. Cooper, Nathan Cornelius, Hesham Ali, Sanjukta Bhowmick:
Characterization of S. cerevisiae Protein Complexes by Representative DDI Graph Planarity. BCB 2020: 21:1-21:6 - [c138]Elham Rastegari, Donovan Orn, Hesham H. Ali:
Smart Computational Approaches with Advanced Feature Selection Algorithms for Optimizing the Classification of Mobility Data in Health Informatics. BCB 2020: 58:1-58:9 - [c137]Kathryn M. Cooper, Nathan Cornelius, William Gasper
, Sanjukta Bhowmick, Hesham Ali:
On the Planarity of Validated Complexes of Model Organisms in Protein-Protein Interaction Networks. ICCS (1) 2020: 652-666 - [c136]Yara Mahfood Haddad, Hesham H. Ali:
A Dynamic Approach for Managing Heterogeneous Wireless Networks in Smart Environments. ISCC 2020: 1-7 - [c135]Suyeon Kim, Ishwor Thapa, Farial Samadi, Hesham Ali:
Computational Approaches for Drug Design: A Focus on Drug Repurposing. IWBBIO 2020: 213-223
2010 – 2019
- 2019
- [j26]Kathryn M. Cooper, Wail Hassan, Hesham Ali:
Identification of temporal network changes in short-course gene expression from C. elegans reveals structural volatility. Int. J. Comput. Biol. Drug Des. 12(2): 171-188 (2019) - [j25]Sean West
, Sushil Kumar, Surinder K. Batra, Hesham Ali, Dario Ghersi
:
Uncovering and characterizing splice variants associated with survival in lung cancer patients. PLoS Comput. Biol. 15(10) (2019) - [c134]Qianran Li, Dario Ghersi, Ishwor Thapa, Ling Zhang, Hesham Ali, Kate Cooper:
Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage. BIBM 2019: 2075-2082 - [c133]Elham Rastegari, Sasan Azizian, Hesham H. Ali:
Machine Learning and Similarity Network Approaches to Support Automatic Classification of Parkinson's Diseases Using Accelerometer-based Gait Analysis. HICSS 2019: 1-12 - [c132]Ishwor Thapa
, Hesham Ali
:
A New Graph Database System for Multi-omics Data Integration and Mining Complex Biological Information. ICCABS 2019: 171-183 - [c131]Suyeon Kim, Ishwor Thapa, Ling Zhang, Hesham Ali:
On Identifying Candidates for Drug Repurposing for the Treatment of Ulcerative Colitis using Gene Expression Data. IWBBIO (1) 2019: 513-521 - [r1]Asuda Sharma, Hesham Ali, Dario Ghersi:
Cluster Analysis of Biological Networks. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 1036-1046 - 2018
- [c130]Suyeon Kim, Ishwor Thapa, Hesham H. Ali:
A Graph-Theoretic Approach for Identifying Bacterial Inter-correlations and Functional Pathways in Microbiome Data. BIBM 2018: 405-411 - [e9]Nathalia Peixoto, Margarida Silveira, Hesham H. Ali, Carlos Dias Maciel, Egon L. van den Broek:
Biomedical Engineering Systems and Technologies - 10th International Joint Conference, BIOSTEC 2017, Porto, Portugal, February 21-23, 2017, Revised Selected Papers. Communications in Computer and Information Science 881, Springer 2018, ISBN 978-3-319-94805-8 [contents] - 2017
- [c129]Elham Rastegari, Sasan Azizian, Hesham H. Ali:
A Hierarchical Learning Model for Extracting Public Health Data from Social Media. AMCIS 2017 - [c128]Elham Rastegari, Hesham H. Ali:
A Correlation Network Model Utilizing Gait Parameters for Evaluating Health Levels. BCB 2017: 568-574 - [c127]Sean West
, Hesham H. Ali:
Granularity-aware fusion of biological networks for information extraction. BIBM 2017: 638-642 - [c126]Elham Rastegari, Vivien Marmelat, Lotfollah Najjar, Dhundy Bastola, Hesham H. Ali:
Using gait parameters to recognize various stages of Parkinson's disease. BIBM 2017: 1647-1651 - [c125]Suyeon Kim, Ishwor Thapa, Guoqing Lu, Lifeng Zhu, Hesham H. Ali:
A systems biology approach for modeling microbiomes using split graphs. BIBM 2017: 2062-2068 - [c124]Julia D. Warnke-Sommer, Hesham H. Ali:
Evaluation of the oral microbiome as a biomarker for early detection of human oral carcinomas. BIBM 2017: 2069-2076 - [c123]Kathryn M. Cooper, Wail Hassan
, Hesham Ali:
A network-based approach to mine temporal genes exhibiting significant expression variation in Caenorhabditis elegans. BIBM 2017: 2151-2156 - [c122]Vi Dam, Hesham H. Ali:
On the integration of assembly and non-assembly approaches for comparing biological sequences. BIBM 2017: 2232-2234 - [c121]Asuda Sharma, Hesham H. Ali:
Analysis of clustering algorithms in biological networks. BIBM 2017: 2303-2305 - [c120]Julia Warnke-Sommer, Hesham H. Ali:
Graph-based Analysis of Genetic Features Associated with Mobile Elements in Crohn s Disease and Healthy Gut Microbiomes. BIOINFORMATICS 2017: 104-114 - [c119]Alexander Fuchsberger, Hesham Ali:
A Correlation Network Model for Structural Health Monitoring and Analyzing Safety Issues in Civil Infrastructures. HICSS 2017: 1-10 - [c118]Julia D. Warnke-Sommer, Hesham H. Ali:
Parallel NGS Assembly Using Distributed Assembly Graphs Enriched with Biological Knowledge. IPDPS Workshops 2017: 273-282 - [c117]Yara Mahfood Haddad, Hesham H. Ali:
An Evolutionary Graph-Based Approach for Managing Self-Organized IoT Networks. MobiWac 2017: 113-119 - [e8]Hesham H. Ali, Ana L. N. Fred, Hugo Gamboa, Mário Vaz:
Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2017) - Volume 3: BIOINFORMATICS, Porto, Portugal, February 21-23, 2017. SciTePress 2017, ISBN 978-989-758-214-1 [contents] - 2016
- [c116]Sean West
, Hesham H. Ali:
On the Impact of Granularity in Extracting Knowledge from Bioinformatics Data. BIOINFORMATICS 2016: 92-103 - [c115]Sean West
, Hesham H. Ali:
Sensitivity Analysis of Granularity Levels in Complex Biological Networks. BIOSTEC (Selected Papers) 2016: 167-188 - [c114]Hesham H. Ali:
Tutorials: Tutorial I: HPC and big data analytics in biomedical informatics. HPCS 2016: 1-17 - [c113]Sachin Pawaskar, Hesham H. Ali:
A dynamic run-profile energy-aware approach for scheduling computationally intensive bioinformatics applications. HPCS 2016: 427-434 - [e7]James P. Gilbert, Haim Azhari, Hesham H. Ali, Carla Quintão, Jan Sliwa, Carolina Ruiz, Ana L. N. Fred, Hugo Gamboa:
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016) - Volume 1: BIODEVICES, Rome, Italy, February 21-23, 2016. SciTePress 2016, ISBN 978-989-758-170-0 [contents] - [e6]James P. Gilbert, Haim Azhari, Hesham H. Ali, Carla Quintão, Jan Sliwa, Carolina Ruiz, Ana L. N. Fred, Hugo Gamboa:
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016) - Volume 3: BIOINFORMATICS, Rome, Italy, February 21-23, 2016. SciTePress 2016, ISBN 978-989-758-170-0 [contents] - [e5]James P. Gilbert, Haim Azhari, Hesham H. Ali, Carla Quintão, Jan Sliwa, Carolina Ruiz, Ana L. N. Fred, Hugo Gamboa:
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016) - Volume 4: BIOSIGNALS, Rome, Italy, February 21-23, 2016. SciTePress 2016, ISBN 978-989-758-170-0 [contents] - [e4]James P. Gilbert, Haim Azhari, Hesham H. Ali, Carla Quintão, Jan Sliwa, Carolina Ruiz, Ana L. N. Fred, Hugo Gamboa:
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016) - Volume 5: HEALTHINF, Rome, Italy, February 21-23, 2016. SciTePress 2016, ISBN 978-989-758-170-0 [contents] - [e3]James P. Gilbert, Haim Azhari, Hesham H. Ali, Carla Quintão, Jan Sliwa, Carolina Ruiz, Ana L. N. Fred, Hugo Gamboa:
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016) - Volume 2: BIOIMAGING, Rome, Italy, February 21-23, 2016. SciTePress 2016, ISBN 978-989-758-170-0 [contents] - [e2]Giorgio A. Ascoli, Michael Hawrylycz, Hesham H. Ali, Deepak Khazanchi, Yong Shi:
Brain Informatics and Health - International Conference, BIH 2016, Omaha, NE, USA, October 13-16, 2016, Proceedings. Lecture Notes in Computer Science 9919, 2016, ISBN 978-3-319-47102-0 [contents] - 2015
- [c112]Julia Warnke-Sommer
, Ishwor Thapa, Hesham H. Ali:
Next generation sequence assembler mis-assembly of phage genomes with terminal redundancy. BIBM 2015: 1102-1108 - [c111]Kathryn M. Cooper, Prasuna Vemuri, Hesham H. Ali:
On the comparison of state- and transition-based analysis of biological relevance in gene co-expression networks. BIBM 2015: 1197-1203 - [c110]Kathryn M. Cooper, Stephen Bonasera, Hesham H. Ali:
Identifying Aging Genes in the Aging Mouse Hypothalamus Using Gateway Node Analysis of Correlation Networks. BIOINFORMATICS 2015: 36-43 - [c109]Kathryn M. Cooper, Stephen Bonasera, Hesham H. Ali:
Evaluating the Robustness of Correlation Network Analysis in the Aging Mouse Hypothalamus. BIOSTEC (Selected Papers) 2015: 224-238 - [c108]Horacio Pérez Sánchez, Afshin Fassihi, José M. Cecilia, Hesham H. Ali, Mario Cannataro:
Applications of High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry. IWBBIO (2) 2015: 527-541 - [c107]Kathryn Dempsey Cooper, Sachin Pawaskar, Hesham H. Ali:
Identification of Biologically Significant Elements Using Correlation Networks in High Performance Computing Environments. IWBBIO (2) 2015: 607-619 - [c106]Abhishek Karpate, Hesham H. Ali:
A Multi-stage Graph Approach for Efficient Clustering in Self-Organized Wireless Sensor Networks. SENSORNETS 2015: 56-62 - 2014
- [j24]Kathryn Dempsey, Hesham H. Ali:
Identifying aging-related genes in mouse hippocampus using gateway nodes. BMC Syst. Biol. 8: 62 (2014) - [j23]Jasjit K. Banwait
, Hesham H. Ali, Dhundy Bastola:
Optimisation of miRNA-mRNA relationship prediction using biological features. Int. J. Comput. Biol. Drug Des. 7(1): 45-60 (2014) - [j22]Hesham H. Ali, Yong Shi, Deepak Khazanchi
:
Special Issue on ICCS 2012. J. Comput. Sci. 5(2): 63-64 (2014) - [c105]Julia Warnke
, Hesham H. Ali:
Focus: a new multilayer graph model for short read analysis and extraction of biologically relevant features. BCB 2014: 489-498 - [c104]Sean West
, Hesham H. Ali:
On the impact of data integration and edge enrichment in mining significant signals from biological networks. BCB 2014: 760-767 - [c103]Kathryn Dempsey, Hesham H. Ali:
On the Robustness of the Biological Correlation Network Model. BIOINFORMATICS 2014: 186-195 - [c102]Hesham H. Ali, Kathryn Dempsey:
Introduction to Data Analysis and Visualization in Biomedical Informatics Minitrack. HICSS 2014: 2547 - [c101]Egidijus Paliulis, Hesham H. Ali:
An integrated model of human Biomedical and Clinical Data structures. ICCABS 2014: 1-6 - 2013
- [j21]Oliver Bonham-Carter, Hesham H. Ali, Dhundy Bastola:
A base composition analysis of natural patterns for the preprocessing of metagenome sequences. BMC Bioinform. 14(S-11): S5 (2013) - [j20]Julia Warnke
, Hesham H. Ali:
An efficient and scalable graph modeling approach for capturing information at different levels in next generation sequencing reads. BMC Bioinform. 14(S-11): S7 (2013) - [j19]Kathryn Dempsey, Vladimir Ufimtsev, Sanjukta Bhowmick, Hesham Ali:
A Parallel Template for Implementing filters for biological Correlation Networks. Int. J. Comput. 12(4): 285-297 (2013) - [c100]Kathryn Dempsey, Hesham H. Ali:
Identifying Pathway Proteins in Networks using Convergence. BCB 2013: 853 - [c99]Hesham H. Ali, Kathryn Dempsey:
Introduction to Data Analysis and Visualization in Biomedical Informatics Minitrack. HICSS 2013: 2381 - [c98]Julia Warnke
, Hesham H. Ali:
A Tolerance Graph Approach for Domain-Specific Assembly of Next Generation Sequencing Data. ICDM Workshops 2013: 88-95 - [c97]Kathryn Dempsey, Ishwor Thapa, Claudia Cortes, Zach Eriksen, Dhundy Bastola, Hesham H. Ali:
On Mining Biological Signals Using Correlation Networks. ICDM Workshops 2013: 327-334 - [c96]Rohan Khazanchi
, Kathryn Dempsey, Ishwor Thapa, Hesham H. Ali:
On Identifying and Analyzing Significant Nodes in Protein-Protein Interaction Networks. ICDM Workshops 2013: 343-348 - [c95]Sean West, Kathryn Dempsey, Sanjukta Bhowmick, Hesham H. Ali:
Analysis of Incrementally Generated Clusters in Biological Networks Using Graph-Theoretic Filters and Ontology Enrichment. ICDM Workshops 2013: 584-591 - [c94]Kathryn Dempsey, Tzu-Yi Chen, Sriram Srinivasan, Sanjukta Bhowmick, Hesham H. Ali:
A structure-preserving hybrid-chordal filter for sampling in correlation networks. HPCS 2013: 243-250 - [c93]Dhawal Verma, Hesham H. Ali, Zhengxin Chen:
Exploring Database Keyword Search for Association Studies between Genetic Variants and Diseases. ITQM 2013: 206-213 - 2012
- [j18]Kathryn Dempsey, Ishwor Thapa, Dhundy Bastola, Hesham H. Ali:
Functional identification in correlation networks using gene ontology edge annotation. Int. J. Comput. Biol. Drug Des. 5(3/4): 222-244 (2012) - [c92]Kathryn Dempsey, Tzu-Yi Chen, Sanjukta Bhowmick, Hesham H. Ali:
On the design of advanced filters for biological networks using graph theoretic properties. BIBM 2012: 1-5 - [c91]Jasjit K. Banwait
, Hesham H. Ali, Dhundy Bastola:
Enriching miRNA binding site specificity with sequence profile based filtering of 3'-UTR region of mRNA. BIBM Workshops 2012: 558-563 - [c90]Oliver Bonham-Carter, Hesham H. Ali, Dhundy Bastola:
A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base composition. BIBM Workshops 2012: 696-703 - [c89]Julia Warnke
, Hesham H. Ali:
An efficient overlap graph coarsening approach for modeling short reads. BIBM Workshops 2012: 704-711 - [c88]Abdelnasser Abdelaal, Hesham H. Ali:
Human Capital in the Domain of Community Wireless Networks. HICSS 2012: 3338-3346 - [c87]Abdelnasser Abdelaal, Hesham H. Ali:
Measuring Social Capital in the Domain of Community Wireless Networks. HICSS 2012: 4850-4859 - [c86]Mahantesh Halappanavar, John Feo, Kathryn Dempsey, Hesham H. Ali, Sanjukta Bhowmick:
A Novel Multithreaded Algorithm for Extracting Maximal Chordal Subgraphs. ICPP 2012: 58-67 - [c85]Hesham H. Ali, Laura Ricci, Italo Epicoco, Manuel Ujaldon, Jonathan Passerat-Palmbach, David R. C. Hill, Manuel Villén-Altamirano:
HPCS 2012 tutorials: Tutorial I: High performance computing in biomedical informatics. HPCS 2012 - [c84]Julia Warnke
, Sachin Pawaskar, Hesham H. Ali:
An energy-aware bioinformatics application for assembling short reads in high performance computing systems. HPCS 2012: 154-160 - [c83]Kathryn Dempsey, Kanimathi Duraisamy, Sanjukta Bhowmick, Hesham H. Ali:
The Development of Parallel Adaptive Sampling Algorithms for Analyzing Biological Networks. IPDPS Workshops 2012: 725-734 - [c82]Hesham H. Ali, Yong Shi, Deepak Khazanchi
, Michael Lees
, G. Dick van Albada, Jack J. Dongarra, Peter M. A. Sloot:
Empowering Science through Computing, Preface for ICCS 2012. ICCS 2012: 1-6 - [c81]Kathryn Dempsey, Sanjukta Bhowmick, Hesham H. Ali:
Function-preserving Filters for Sampling in Biological Networks. ICCS 2012: 587-595 - [e1]Hesham H. Ali, Yong Shi, Deepak Khazanchi, Michael Lees, G. Dick van Albada, Jack J. Dongarra, Peter M. A. Sloot:
Proceedings of the International Conference on Computational Science, ICCS 2012, Omaha, Nebraska, USA, 4-6 June, 2012. Procedia Computer Science 9, Elsevier 2012 [contents] - 2011
- [c80]Kathryn Dempsey, Ishwor Thapa, Dhundy Bastola, Hesham H. Ali:
Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search. BIBM Workshops 2011: 255-261 - [c79]Kathryn Dempsey, Hesham H. Ali:
Evaluation of essential genes in correlation networks using measures of centrality. BIBM Workshops 2011: 509-515 - [c78]Kathryn Dempsey, Stephen Bonasera
, Dhundy Bastola, Hesham H. Ali:
A Novel Correlation Networks Approach for the Identification of Gene Targets. HICSS 2011: 1-8 - [c77]Kanimathi Duraisamy, Kathryn Dempsey, Hesham H. Ali, Sanjukta Bhowmick:
A noise reducing sampling approach for uncovering critical properties in large scale biological networks. HPCS 2011: 721-728 - [c76]Abhishek Karpate, Hesham H. Ali:
An energy-aware genetic algorithm for managing self-organized wireless sensor networks. Wireless Days 2011: 1-6 - [c75]Kathryn Dempsey, Kanimathi Duraisamy, Hesham H. Ali, Sanjukta Bhowmick:
A Parallel Graph Sampling Algorithm for Analyzing Gene Correlation Networks. ICCS 2011: 136-145 - [p1]Kathryn Dempsey, Benjamin Currall, Richard Hallworth, Hesham H. Ali:
A New Approach for Sequence Analysis: Illustrating an Expanded Bioinformatics View through Exploring Properties of the Prestin Protein. Handbook of Research on Computational and Systems Biology 2011: 202-223 - 2010
- [j17]Rajib Sengupta, Dhundy Bastola, Hesham H. Ali:
Classification and Identification of fungal Sequences Using Characteristic restriction endonuclease Cut Order. J. Bioinform. Comput. Biol. 8(2): 181-198 (2010) - [c74]Kathryn Dempsey, Benjamin Currall, Richard Hallworth, Hesham H. Ali:
An intelligent data-centric approach toward identification of conserved motifs in protein sequences. BCB 2010: 398-401 - [c73]Sachin Pawaskar, Hesham H. Ali:
A dynamic energy-aware model for scheduling computationally intensive bioinformatics applications. HPCS 2010: 216-223
2000 – 2009
- 2009
- [c72]Abdelnasser Abdelaal, Hesham H. Ali:
Analyzing community contributions to the development of community wireless networks. ECIS 2009: 2858-2869 - [c71]Abdelnasser Abdelaal, Hesham H. Ali, Deepak Khazanchi
:
The Role of Social Capital in the Creation of Community Wireless Networks. HICSS 2009: 1-10 - [c70]Huimin Geng, Wing C. Chan, Hesham H. Ali:
A Computational Method to Predict DNA Copy Number Alterations from Gene Expression Data in Tumor Cases. HICSS 2009: 1-10 - [c69]Abdelnasser Abdelaal, Hesham H. Ali:
Community wireless networks: Emerging wireless commons for digital inclusion. ISTAS 2009: 1-9 - [c68]Jong-Hoon Youn, Hesham H. Ali, Hamid Sharif, Biplav Chhetri:
RFID-based information system for preventing medical errors. MobiQuitous 2009: 1-6 - [c67]Nam Pham, Jong-Hoon Youn, Hesham H. Ali:
Improving Network Throughput Using a Fixed Scheduling Scheme and a P-Persistent Approach. NTMS 2009: 1-6 - 2008
- [j16]Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham H. Ali:
MTAP: The Motif Tool Assessment Platform. BMC Bioinform. 9(S-9) (2008) - [j15]Hesham H. Ali:
Self Ranking and Evaluation Approach for Focused Crawler Based on Multi-Agent System. Int. Arab J. Inf. Technol. 5(2): 183-191 (2008) - [j14]Xutao Deng, Huimin Geng, Hesham H. Ali:
A Hidden Markov Model approach to predicting yeast gene function from sequential gene expression data. Int. J. Bioinform. Res. Appl. 4(3): 263-273 (2008) - [j13]Huimin Geng, Xutao Deng, Hesham H. Ali:
Message Passing Clustering (MPC): a knowledge-based framework for clustering under biological constraints. Int. J. Data Min. Bioinform. 2(2): 95-120 (2008) - [c66]Abdelnasser Abdelaal, Hesham H. Ali:
A Graph Theoretic Approach for Analysis and Design of Community Wireless Networks. AMCIS 2008: 310 - [c65]Abdelnasser Abdelaal, Hesham H. Ali:
A Content-Based Pricing Model for Municipal and Community Wireless Networks. AMCIS 2008: 385 - [c64]Jason Uher, Dillon Sadofsky, Jong-Hoon Youn, Hesham H. Ali, Hamid Sharif, Jitender S. Deogun, Steven H. Hinrichs:
I2MeDS: Intelligent Integrated Medical Data System. BMEI (1) 2008: 631-637 - [c63]Nitin Sharma, Jong-Hoon Youn, Neeraj Shrestha, Hesham H. Ali:
Direction Finding Signage System using RFID for Healthcare Applications. BMEI (1) 2008: 900-904 - [c62]Dhundy Bastola, Sarfraz H. Chandio, Peter Iwen, Steven H. Hinrichs, Hesham H. Ali:
RFLP-WAVE Analysis for Rapid Identification of Medically Important Fungi. HICSS 2008: 229 - [c61]Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham H. Ali:
A parallel architecture for regulatory motif algorithm assessment. IPDPS 2008: 1-8 - [c60]Huimin Geng, Hesham H. Ali, Wing C. Chan:
A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling. ISBRA 2008: 414-425 - [c59]Syed I. Nayer, Hesham H. Ali:
A Dynamic Energy-Aware Algorithm for Self-Optimizing Wireless Sensor Networks. IWSOS 2008: 262-268 - 2007
- [c58]Abdelnasser Abdelaal, Hesham H. Ali:
A Typology for Community Wireless Networks Business Models. AMCIS 2007: 308 - [c57]Xiaolu Huang, Hesham H. Ali:
Reducing Folding Scenario Candidates in Pseudoknots Detection Using PLMM_DPSS Algorithm Integrated With Energy Filters. BIBE 2007: 1299-1303 - [c56]Hesham H. Ali, Simon Sherman:
Minitrack: Advanced Data Management Tools for Biomedical Informatics. HICSS 2007: 127 - [c55]Huimin Geng, Javeed Iqbal
, Xutao Deng, Wing C. Chan, Hesham H. Ali:
Virtual CGH: Prediction of Novel Regions of Chromosomal Alterations in Tumor from Gene Expression Profiling. HICSS 2007: 129 - [c54]Sudha Mudundi, Hesham H. Ali:
A Robust Scalable Cluster-Based Multi-hop Routing Protocol for Wireless Sensor Networks. ISPA 2007: 895-907 - [c53]Hong Zhou, Lu Jin, Zhongwei Zhang, Hesham H. Ali, Chulho Won:
Applications and Performances of Extended TTDDs in Large-Scale Wireless Sensor Networks. MSN 2007: 135-142 - [c52]Sachin Pawaskar, Hesham H. Ali:
Dynamic energy aware task scheduling using run-queue peek. Parallel and Distributed Computing and Networks 2007: 162-167 - [c51]Jong-Hoon Youn, Hesham H. Ali, Hamid Sharif, Jitender S. Deogun, Jason Uher, Steven H. Hinrichs:
WLAN-Based Real-Time Asset Tracking System in Healthcare Environments. WiMob 2007: 71 - 2006
- [j12]Xutao Deng, Huimin Geng, Dhundy Bastola, Hesham H. Ali:
Link test - A statistical method for finding prostate cancer biomarkers. Comput. Biol. Chem. 30(6): 425-433 (2006) - [j11]Xutao Deng, Huimin Geng, Hesham H. Ali:
Joint Learning of Gene Functions - a Bayesian Network Model Approach. J. Bioinform. Comput. Biol. 4(2): 217-240 (2006) - [j10]Abdelnasser Abdelaal, Hesham H. Ali, Hamid Sharif:
A coarse-grain analysis for the performance of measurement-based admission control algorithms. J. Comput. Methods Sci. Eng. 6(5-6): 349-358 (2006) - [c50]Matthew Palensky, Hesham H. Ali:
A Genetic Algorithm for Simplifying the Amino Acid Alphabet in Bioinformatics Applications. Artificial Intelligence and Applications 2006: 19-25 - [c49]Abdelnasser Abdelaal, Hesham H. Ali:
Ubiquitous Connectivity: A Framework for Business Models for Wireless Community Networks. AMCIS 2006: 229 - [c48]Abdelnasser Abdelaal, Hesham H. Ali:
On Incorporating QoS Parameters in M-commerce Applications. AMCIS 2006: 243 - [c47]Surekha Kanapuram, Hesham H. Ali, Gert-Jan de Vreede
:
On Effective Utilization of Wireless Networks in Collaborative Applications. CollaborateCom 2006 - [c46]Chulho Won, Jong-Hoon Youn, Hesham H. Ali:
Impact of High-Mobility Radio Jamming in Large-Scale Wireless Sensor Networks. EUC Workshops 2006: 244-251 - [c45]Surekha Kanapuram, Matthew Myers, Hesham H. Ali:
On the Impact of Employing Various Network Architectures on the Performance of Collaborative Applications. EuroIMSA 2006: 53-60 - [c44]Kavitha Gundappachikkenahalli, Hesham H. Ali:
AdProc: An Adaptive Routing Framework to Provide QoS in Wireless Sensor Networks. Parallel and Distributed Computing and Networks 2006: 76-83 - [c43]Pavan K. Yogender, Hesham H. Ali:
Impact of Employing Different Security Levels on QoS Parameters in Virtual Private Networks. Parallel and Distributed Computing and Networks 2006: 142-149 - 2005
- [j9]Alexander G. Churbanov, Mark A. Pauley, Daniel Quest, Hesham H. Ali:
A method of precise mRNA/DNA homology-based gene structure prediction. BMC Bioinform. 6: 261 (2005) - [j8]Darin Plum, Hesham H. Ali:
An evolutionary approach to vehicle routing problem with dynamic time and precedence relationships. J. Comput. Methods Sci. Eng. 5(4): 57-66 (2005) - [c42]Abdelnasser Abdelaal, Hesham H. Ali:
An Efficient Accounting Architecture for QoS-aware Internet Traffic. AMCIS 2005: 23 - [c41]Huimin Geng, Xutao Deng, Hesham H. Ali:
Message Passing Clustering with Stochastic Merging Based on Kernel Functions. AMCIS 2005: 328 - [c40]Xutao Deng, Huimin Geng, Hesham H. Ali:
A Dynamic Bayesian Network Model for Hierarchial Classification and its Application in Predicting Yeast Genes Functions. AMCIS 2005: 332 - [c39]Xiaolu Huang, Hesham H. Ali, Anguraj Sadanandam
, Rakesh K. Singh:
Protein Motif Searching Through Similar Enriched Parikh Vector Identification. BIBE 2005: 285-289 - [c38]Huimin Geng, Xutao Deng, Dhundy Bastola, Hesham H. Ali:
On Clustering Biological Data Using Unsupervised and Semi-Supervised Message Passing. BIBE 2005: 294-298 - [c37]Xutao Deng, Huimin Geng, Hesham H. Ali:
Predicting Yeast Gene Function Based on Hidden Markov Models. CATA 2005: 196-201 - [c36]Hiranmayi Sreenivas, Hesham H. Ali:
A hierarchical virtual-backbone routing approach in ad hoc networks. Communications and Computer Networks 2005: 81-87 - [c35]Xutao Deng, Huimin Geng, Hesham H. Ali:
Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks. CSB 2005: 25-34 - [c34]Huimin Geng, Hesham H. Ali:
A New Clustering Strategy with Stochastic Merging and Removing Based on Kernel Functions. CSB Workshops 2005: 41-42 - [c33]Alexander G. Churbanov, Hesham H. Ali:
Combinatorial method of splice sites prediction. CSB Workshops 2005: 189-190 - [c32]Abdelnasser Abdelaal, Hesham H. Ali:
A New QoS Renegotiation Mechanism for Multimedia Applications. HICSS 2005 - [c31]Hesham H. Ali, Simon Sherman:
Introduction to Mini-Track: Advanced Computational Approaches and IT Techniques in Bioinformatics. HICSS 2005 - [c30]Daniel Quest, Hesham H. Ali:
A Grammar Based Approach for Mining Bioinformatics Databases. HICSS 2005 - [c29]Elwalid Sidahmed, Hesham H. Ali:
A QoS Based Model for Supporting Multimedia Applications over Cellular IP. HICSS 2005 - [c28]Yifeng Li, Hesham H. Ali:
SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing Errors. International Conference on Computational Science (2) 2005: 927-935 - [c27]Huimin Geng, Xutao Deng, Hesham H. Ali:
A new clustering algorithm using message passing and its applications in analyzing microarray data. ICMLA 2005 - [c26]Karthik Ramachandra, Hesham H. Ali:
HYDRA: A New Approach for Integrating Various Wireless Environments. ISCC 2005: 961-968 - [c25]Mohana Desiraju, Hesham H. Ali:
Fault Tolerant Scheduling of Interval Ordered Tasks with Communication in a Multiprocessor System. Parallel and Distributed Computing and Networks 2005: 559-564 - [c24]Yoshitsugu Hashimoto, Hesham H. Ali:
A Genetic Real-Time Fault-Tolerant Scheduling Algorithm with Backup Overloading Technique. IASTED PDCS 2005: 106-112 - [c23]Rong Chen, Hesham H. Ali:
A new approach for gene prediction using comparative sequence analysis. SAC 2005: 177-184 - 2004
- [c22]Xiaolu Huang, Hesham H. Ali:
A Common Interval Searching Algorithm for Protein Sequence Comparison. CAINE 2004: 57-62 - [c21]Kavitha Gundappachikkenahalli, Hesham H. Ali:
Adaptive Data Forwarding Techniques for Energy Conservation in Wireless Sensor Networks. CAINE 2004: 120-125 - [c20]Mohana Desiraju, Hesham H. Ali:
A New Fast Fault Tolerant Scheduling Approach in Distributed Systems. CAINE 2004: 171-176 - [c19]Huimin Geng, Dhundy Bastola, Hesham H. Ali:
A New Approach to Clustering Biological Data Using Message Passing. CSB 2004: 493-494 - [c18]Daniel Quest, Hesham H. Ali:
Ontology Specific Data Mining Based on Dynamic Grammars. CSB 2004: 495-496 - [c17]Xutao Deng, Hesham H. Ali:
A Hidden Markov Model for Gene Function Prediction from Sequential Expression Data. CSB 2004: 670-671 - [c16]Alexandre Tchourbanov, Hesham H. Ali, Jitender S. Deogun:
Using Enhancing Signals to Improve Specificity of ab initio Splice Site Sensors. CSB 2004: 672-673 - [c15]Xiaolu Huang, Hesham H. Ali, Anguraj Sadanandam, Rakesh K. Singh:
SRPVS: A New Motif Searching Algorithm for Protein Analysis. CSB 2004: 674-675 - [c14]Hesham H. Ali, Gert-Jan de Vreede, Karthik Ramachandra, Elwalid Sidahmed, Hiranmayi Sreenivas:
Evaluating Wireless Architectures for GDS Applications. HICSS 2004 - [c13]Karthik Ramachandra, Hesham H. Ali:
Evaluating the Performance of Various Architectures for Wireless Ad Hoc Networks. HICSS 2004 - [c12]Hiranmayi Sreenivas, Hesham H. Ali:
An Evolutionary Bluetooth Scatternet Formation Protocol. HICSS 2004 - [c11]Dan Kuyper, Hesham H. Ali, Amr M. Mohamed, Steven H. Hinrichs:
Identification of Mycobacterium Species Using Curated Custom Databases. IPDPS 2004 - [c10]Christopher J. Augeri, Hesham H. Ali:
New graph-based algorithms for partitioning VLSI circuits. ISCAS (4) 2004: 521-524 - 2003
- [c9]Alexandre Tchourbanov, Daniel Quest, Hesham H. Ali, Mark A. Pauley, Robert B. Norgren:
A New Approach for Gene Annotation Using Unambiguous Sequence Joining. CSB 2003: 353-362 - [c8]Xutao Deng, Hesham H. Ali:
A Computational Approach to Reconstructing Gene Regulatory Networks. CSB 2003: 413-414 - [c7]Rong Chen, Hesham H. Ali:
On Gene Prediction by Cross-Species Comparative Sequence Analysis. CSB 2003: 446-447 - [c6]Xiaolu Huang, Hesham H. Ali:
RCIS: A Common Interval Searching Algorithm for Amino Acid Sequences. CSB 2003: 573-574 - [c5]Matthew Palensky, Hesham H. Ali:
A Genetic Algorithm for Simplifying The Amino Acid Alphabet. CSB 2003: 598-601 - 2000
- [c4]Jingsen Zheng, Hesham H. Ali:
A genetic algorithm for channel routing in VLSI design. CATA 2000: 181-185
1990 – 1999
- 1997
- [c3]Hesham H. Ali, Raj Vemulapalli:
A New Approach for Task Scheduling in Distributed Systems. Euro-PDS 1997: 117-121 - 1996
- [c2]Raj Vemulapalli, Hesham H. Ali:
Extended Abstract: An Augmentation-Based Algorithm for Task Scheduling in Parallel Systems. HICSS (1) 1996: 666-667 - 1995
- [j7]Hesham El-Rewini, Hesham H. Ali, Ted G. Lewis:
Task Scheduling in Multiprocessing Systems. Computer 28(12): 27-37 (1995) - [j6]Hesham H. Ali, Hesham El-Rewini:
An Optimal Algorithm for Scheduling Interval Ordered Tasks with Communication on N Processors. J. Comput. Syst. Sci. 51(2): 301-306 (1995) - [j5]Hesham El-Rewini, Hesham H. Ali:
Static Scheduling of Conditional Branches in Parallel Programs. J. Parallel Distributed Comput. 24(1): 41-54 (1995) - [j4]Hesham El-Rewini, Hesham H. Ali:
On Optimal Loop Unrolling in Two-processor Scheduling. Parallel Algorithms Appl. 7(1-2): 107-119 (1995) - 1994
- [b1]Hesham El-Rewini, Theodore G. Lewis, Hesham H. Ali:
Task scheduling in parallel and distributed systems. Prentice Hall series in innovative technology, Prentice Hall 1994, ISBN 978-0-13-099235-2, pp. I-XIV, 1-290 - [j3]Hesham El-Rewini, Hesham H. Ali:
On Considering Communication in Scheduling Task Graphs on Parallel Processors. Parallel Algorithms Appl. 3(3-4): 177-191 (1994) - [j2]Hesham H. Ali, Hesham El-Rewini:
On the Intractability of Task Allocation in Distributed Systems. Parallel Process. Lett. 4: 149-157 (1994) - 1993
- [j1]Hesham H. Ali, Hesham El-Rewini:
The Time complexity of Scheduling Interval Orders with Communication Is Polynomial. Parallel Process. Lett. 3: 53-58 (1993) - 1992
- [c1]Hesham H. Ali, Hesham El-Rewini:
Scheduling interval ordered tasks on multiprocessor architecture. SAC 1992: 792-797
Coauthor Index

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