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Philip E. Bourne
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- affiliation: San Diego Supercomputer Center, USA
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2020 – today
- 2022
- [j144]Zheng Zhao
, Lei Xie, Philip E. Bourne
:
Correction to "Structural Insights into Characterizing Binding Sites in Epidermal Growth Factor Receptor Kinase Mutants". J. Chem. Inf. Model. 62(1): 223-224 (2022) - 2021
- [j143]Micaela S. Parker, Arlyn E. Burgess, Philip E. Bourne
:
Ten simple rules for starting (and sustaining) an academic data science initiative. PLoS Comput. Biol. 17(2) (2021) - [i3]Christine L. Borgman, Philip E. Bourne:
Why it takes a village to manage and share data. CoRR abs/2109.01694 (2021) - [i2]Tian Cai, Li Xie, Muge Chen, Yang Liu, Di He, Shuo Zhang, Cameron Mura, Philip E. Bourne, Lei Xie:
Exploration of Dark Chemical Genomics Space via Portal Learning: Applied to Targeting the Undruggable Genome and COVID-19 Anti-Infective Polypharmacology. CoRR abs/2111.14283 (2021) - 2020
- [j142]Anthony C. Fletcher
, Georges A. Wagner
, Philip E. Bourne
:
Ten simple rules for more objective decision-making. PLoS Comput. Biol. 16(4) (2020) - [j141]Hoe-Han Goh
, Philip E. Bourne
:
Ten simple rules for researchers while in isolation from a pandemic. PLoS Comput. Biol. 16(6) (2020) - [j140]Hoe-Han Goh
, Philip E. Bourne
:
Ten simple rules for writing scientific op-ed articles. PLoS Comput. Biol. 16(9) (2020) - [j139]Cameron Mura
, Mike Chalupa, Abigail M. Newbury, Jack Chalupa, Philip E. Bourne:
Ten simple rules for starting research in your late teens. PLoS Comput. Biol. 16(11) (2020)
2010 – 2019
- 2019
- [j138]Caitlin N. Dreisbach, Theresa A. Koleck, Philip E. Bourne
, Suzanne Bakken:
A systematic review of natural language processing and text mining of symptoms from electronic patient-authored text data. Int. J. Medical Informatics 125: 37-46 (2019) - [j137]Theresa A. Koleck, Caitlin N. Dreisbach, Philip E. Bourne, Suzanne Bakken
:
Natural language processing of symptoms documented in free-text narratives of electronic health records: a systematic review. J. Am. Medical Informatics Assoc. 26(4): 364-379 (2019) - [j136]Zheng Zhao
, Lei Xie, Philip E. Bourne:
Structural Insights into Characterizing Binding Sites in Epidermal Growth Factor Receptor Kinase Mutants. J. Chem. Inf. Model. 59(1): 453-462 (2019) - [j135]Fran Lewitter
, Philip E. Bourne, Teresa K. Attwood:
Ten Simple Rules for avoiding and resolving conflicts with your colleagues. PLoS Comput. Biol. 15(1) (2019) - [j134]Spencer E. Bliven
, Aleix Lafita
, Peter W. Rose
, Guido Capitani, Andreas Prlic
, Philip E. Bourne
:
Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm. PLoS Comput. Biol. 15(4) (2019) - [j133]Philip E. Bourne
:
Ten simple rules to aid in achieving a vision. PLoS Comput. Biol. 15(10) (2019) - [i1]Sean Mullane, Ruoyan Chen, Sri Vaishnavi Vemulapalli, Eli J. Draizen, Ke Wang, Cameron Mura
, Philip E. Bourne:
Machine Learning for Classification of Protein Helix Capping Motifs. CoRR abs/1905.00455 (2019) - 2018
- [j132]Vivek Navale
, Philip E. Bourne
:
Cloud computing applications for biomedical science: A perspective. PLoS Comput. Biol. 14(6) (2018) - [j131]Philip E. Bourne
:
Ten simple rules when considering retirement. PLoS Comput. Biol. 14(10) (2018) - [j130]Philip E. Bourne
, Fran Lewitter, Scott Markel, Jason A. Papin:
One thousand simple rules. PLoS Comput. Biol. 14(12) (2018) - 2017
- [j129]Jianjiong Gao
, Andreas Prlic
, Chunxiao Bi, Wolfgang Bluhm, Dimitris Dimitropoulos, Dong Xu, Philip E. Bourne, Peter W. Rose
:
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank. Bioinform. 33(13): 2047-2049 (2017) - [j128]Philip E. Bourne
, Jessica K. Polka
, Ronald D. Vale, Robert Kiley
:
Ten simple rules to consider regarding preprint submission. PLoS Comput. Biol. 13(5) (2017) - [j127]Philip E. Bourne
:
Ten simple rules in considering a career in academia versus government. PLoS Comput. Biol. 13(10) (2017) - 2016
- [j126]Zheng Zhao, Che L. Martin, Raymond Fan, Philip E. Bourne, Lei Xie:
Drug repurposing to target Ebola virus replication and virulence using structural systems pharmacology. BMC Bioinform. 17: 90 (2016) - [j125]Elizabeth Brunk, Nathan Mih
, Jonathan Monk
, Zhen Zhang, Edward J. O'Brien, Spencer E. Bliven
, Ke Chen, Roger L. Chang
, Philip E. Bourne, Bernhard O. Palsson:
Systems biology of the structural proteome. BMC Syst. Biol. 10: 26 (2016) - 2015
- [j124]Gregory B. Quinn, Chunxiao Bi, Cole H. Christie, Kyle Pang, Andreas Prlic
, Takanori Nakane
, Christine Zardecki
, Maria Voigt, Helen M. Berman, Philip E. Bourne, Peter W. Rose
:
RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank. Bioinform. 31(1): 126-127 (2015) - [j123]Ilan Samish
, Philip E. Bourne, Rafael J. Najmanovich
:
Editor's Choice: Achievements and challenges in structural bioinformatics and computational biophysics. Bioinform. 31(1): 146-150 (2015) - [j122]Spencer E. Bliven
, Philip E. Bourne, Andreas Prlic:
Detection of circular permutations within protein structures using CE-CP. Bioinform. 31(8): 1316-1318 (2015) - [j121]Philip E. Bourne, Vivien Bonazzi
, Michelle Dunn, Eric D. Green, Mark Guyer, George A. Komatsoulis, Jennie Larkin
, Beth Russell:
The NIH Big Data to Knowledge (BD2K) initiative. J. Am. Medical Informatics Assoc. 22(6): 1114 (2015) - [j120]Peter W. Rose
, Andreas Prlic
, Chunxiao Bi, Wolfgang Bluhm, Cole H. Christie, Shuchismita Dutta
, Rachel Kramer Green, David S. Goodsell, John D. Westbrook, Jesse Woo, Jasmine Young
, Christine Zardecki
, Helen M. Berman
, Philip E. Bourne
, Stephen K. Burley
:
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res. 43(Database-Issue): 345-356 (2015) - [j119]Philip E. Bourne, Jon R. Lorsch
, Eric D. Green:
Perspective: Sustaining the big-data ecosystem. Nat. 527(7576): S16-S17 (2015) - [j118]Philip E. Bourne:
Confronting the Ethical Challenges of Big Data in Public Health. PLoS Comput. Biol. 11(2) (2015) - [j117]Thomas C. Erren, Tracy E. Slanger, J. Valérie Groß, Philip E. Bourne, Paul Cullen:
Ten Simple Rules for Lifelong Learning, According to Hamming. PLoS Comput. Biol. 11(2) (2015) - [j116]Philip E. Bourne, Steven E. Brenner, Michael B. Eisen
:
Ten Years of PLoS‡ Computational Biology: A Decade of Appreciation and Innovation. PLoS Comput. Biol. 11(6) (2015) - [c23]Philip E. Bourne:
Big data in biomedicine - An NIH perspective. BIBM 2015: 1 - 2014
- [j115]Philip E. Bourne:
What Big Data means to me. J. Am. Medical Informatics Assoc. 21(2): 194 (2014) - [j114]Lei Xie, Xiaoxia Ge, Hepan Tan, Li Xie, Yinliang Zhang, Thomas Hart, Xiaowei Yang, Philip E. Bourne:
Towards Structural Systems Pharmacology to Study Complex Diseases and Personalized Medicine. PLoS Comput. Biol. 10(5) (2014) - [j113]Philip E. Bourne:
Ten Simple Rules for Approaching a New Job. PLoS Comput. Biol. 10(6) (2014) - [j112]Nicolas P. Rougier
, Michael Droettboom, Philip E. Bourne:
Ten Simple Rules for Better Figures. PLoS Comput. Biol. 10(9) (2014) - [j111]Harriet Dashnow
, Andrew Lonsdale, Philip E. Bourne:
Ten Simple Rules for Writing a PLOS Ten Simple Rules Article. PLoS Comput. Biol. 10(10) (2014) - [c22]Clara Ng, Ruth Hauptman, Yinliang Zhang, Philip E. Bourne, Lei Xie:
Anti-Infectious Drug Repurposing Using an Integrated Chemical Genomics and Structural Systems Biology Approach. Pacific Symposium on Biocomputing 2014: 136-147 - 2013
- [j110]Roger L. Chang
, Lei Xie, Philip E. Bourne, Bernhard O. Palsson:
Antibacterial mechanisms identified through structural systems pharmacology. BMC Syst. Biol. 7: 102 (2013) - [j109]Philip E. Bourne:
The reaming of life: based on the 2010 Jim Gray eScience Award Lecture. Concurr. Comput. Pract. Exp. 25(4): 445-453 (2013) - [j108]Peter W. Rose
, Chunxiao Bi, Wolfgang Bluhm, Cole H. Christie, Dimitris Dimitropoulos, Shuchismita Dutta
, Rachel Kramer Green, David S. Goodsell, Andreas Prlic
, Martha Quesada, Greg B. Quinn, Alexander G. Ramos, John D. Westbrook, Jasmine Young
, Christine Zardecki
, Helen M. Berman
, Philip E. Bourne:
The RCSB Protein Data Bank: new resources for research and education. Nucleic Acids Res. 41(Database-Issue): 475-482 (2013) - [j107]Philip E. Bourne:
Let's Make Those Book Chapters Open Too! PLoS Comput. Biol. 9(2) (2013) - [j106]Hassan Masum, Aarthi Rao, Benjamin M. Good, Matthew H. Todd, Aled M. Edwards
, Leslie Chan
, Barry A. Bunin, Andrew I. Su
, Zakir Thomas, Philip E. Bourne:
Ten Simple Rules for Cultivating Open Science and Collaborative R&D. PLoS Comput. Biol. 9(9) (2013) - [j105]Theodore Alexandrov
, Philip E. Bourne:
Learning How to Run a Lab: Interviews with Principal Investigators. PLoS Comput. Biol. 9(11) (2013) - [c21]Philip E. Bourne:
The era of open. OpenSym 2013: 36:1 - 2012
- [j104]Andreas Prlic, Andrew D. Yates, Spencer Bliven, Peter W. Rose, Julius O. B. Jacobsen
, Peter V. Troshin, Mark Chapman, Jianjiong Gao
, Chuan Hock Koh, Sylvain Foisy, Richard C. G. Holland, Gediminas Rimsa, Michael L. Heuer, Hannes Brandstätter-Müller, Philip E. Bourne, Scooter Willis:
BioJava: an open-source framework for bioinformatics in 2012. Bioinform. 28(20): 2693-2695 (2012) - [j103]Nikolai Hecker
, Jessica Ahmed, Joachim von Eichborn, Mathias Dunkel
, Karel Macha, Andreas Eckert, Michael K. Gilson, Philip E. Bourne, Robert Preissner
:
SuperTarget goes quantitative: update on drug-target interactions. Nucleic Acids Res. 40(Database-Issue): 1113-1117 (2012) - [j102]Yohan Kim, Julia V. Ponomarenko
, Zhanyang Zhu, Dorjee Tamang, Peng Wang, Jason Greenbaum, Claus Lundegaard, Alessandro Sette, Ole Lund
, Philip E. Bourne, Morten Nielsen
, Bjoern Peters:
Immune epitope database analysis resource. Nucleic Acids Res. 40(Web-Server-Issue): 525-530 (2012) - [j101]Rosemary Dickin, Chris James Hall, Laura K. Taylor
, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne:
A Review of 2011 for PLoS Computational Biology. PLoS Comput. Biol. 8(1) (2012) - [j100]Anthony C. Fletcher
, Philip E. Bourne:
Ten Simple Rules for Starting a Company. PLoS Comput. Biol. 8(3) (2012) - [j99]Shoshana J. Wodak
, Daniel Mietchen
, Andrew M. Collings
, Robert B. Russell
, Philip E. Bourne:
Topic Pages: PLoS Computational Biology Meets Wikipedia. PLoS Comput. Biol. 8(3) (2012) - [j98]Anthony C. Fletcher
, Philip E. Bourne:
Ten Simple Rules To Commercialize Scientific Research. PLoS Comput. Biol. 8(9) (2012) - [j97]Philip E. Bourne:
Seven Years; It's Time for a Change. PLoS Comput. Biol. 8(10) (2012) - [j96]Mark Jolly, Anthony C. Fletcher
, Philip E. Bourne:
Ten Simple Rules to Protect Your Intellectual Property. PLoS Comput. Biol. 8(11) (2012) - [c20]Thomas Evangelidis, Philip E. Bourne, Li Xie, Lei Xie:
An integrated workflow for proteome-wide off-target identification and polypharmacology drug design. BIBM Workshops 2012: 32-39 - 2011
- [j95]Wolfgang Bluhm, Bojan Beran, Chunxiao Bi, Dimitris Dimitropoulos, Andreas Prlic
, Greg B. Quinn, Peter W. Rose
, Chaitali Shah, Jasmine Young
, Benjamin T. Yukich, Helen M. Berman
, Philip E. Bourne:
Quality assurance for the query and distribution systems of the RCSB Protein Data Bank. Database J. Biol. Databases Curation 2011 (2011) - [j94]Joachim von Eichborn, Philip E. Bourne, Robert Preissner
:
Cobweb: a Java applet for network exploration and visualisation. Bioinform. 27(12): 1725-1726 (2011) - [j93]Apostol Gramada, Philip E. Bourne:
Coarse-graining the electrostatic potential via distributed multipole expansions. Comput. Phys. Commun. 182(7): 1455-1462 (2011) - [j92]Philip E. Bourne, Timothy W. Clark, Robert Dale, Anita de Waard, Ivan Herman, Eduard H. Hovy, David M. Shotton
:
Improving The Future of Research Communications and e-Scholarship (Dagstuhl Perspectives Workshop 11331). Dagstuhl Manifestos 1(1): 41-60 (2011) - [j91]Sarah L. Kinnings, Nina Liu, Peter J. Tonge
, Richard M. Jackson, Lei Xie, Philip E. Bourne:
A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing. J. Chem. Inf. Model. 51(2): 408-419 (2011) - [j90]Sarah L. Kinnings, Nina Liu, Peter J. Tonge
, Richard M. Jackson, Lei Xie, Philip E. Bourne:
Correction to "A Machine Learning-Based Method To Improve Docking Scoring Functions and Its Application to Drug Repurposing". J. Chem. Inf. Model. 51(5): 1195-1197 (2011) - [j89]Peter W. Rose
, Bojan Beran, Chunxiao Bi, Wolfgang Bluhm, Dimitris Dimitropoulos, David S. Goodsell, Andreas Prlic
, Martha Quesada, Greg B. Quinn, John D. Westbrook, Jasmine Young
, Benjamin T. Yukich, Christine Zardecki
, Helen M. Berman
, Philip E. Bourne:
The RCSB Protein Data Bank: redesigned web site and web services. Nucleic Acids Res. 39(Database-Issue): 392-401 (2011) - [j88]Joachim von Eichborn, Manuela S. Murgueitio, Mathias Dunkel
, Soeren Koerner, Philip E. Bourne, Robert Preissner
:
PROMISCUOUS: a database for network-based drug-repositioning. Nucleic Acids Res. 39(Database-Issue): 1060-1066 (2011) - [j87]Julia V. Ponomarenko
, Nikitas Papangelopoulos, Dirk M. Zajonc, Björn Peters, Alessandro Sette, Philip E. Bourne:
IEDB-3D: structural data within the immune epitope database. Nucleic Acids Res. 39(Database-Issue): 1164-1170 (2011) - [j86]Philip E. Bourne:
Ten Simple Rules for Getting Ahead as a Computational Biologist in Academia. PLoS Comput. Biol. 7(1) (2011) - [j85]Rosemary Dickin, Cecy Marden
, Andrew M. Collings
, Ruth Nussinov, Philip E. Bourne:
A Review of 2010 for PLoS Computational Biology. PLoS Comput. Biol. 7(1) (2011) - [j84]Li Xie, Thomas Evangelidis, Lei Xie, Philip E. Bourne:
Drug Discovery Using Chemical Systems Biology: Weak Inhibition of Multiple Kinases May Contribute to the Anti-Cancer Effect of Nelfinavir. PLoS Comput. Biol. 7(4) (2011) - [j83]Philip E. Bourne, Virginia Barbour
:
Ten Simple Rules for Building and Maintaining a Scientific Reputation. PLoS Comput. Biol. 7(6) (2011) - [j82]Fran Lewitter, Philip E. Bourne:
Teaching Bioinformatics at the Secondary School Level. PLoS Comput. Biol. 7(10) (2011) - 2010
- [j81]Andreas Prlic
, Spencer Bliven
, Peter W. Rose
, Wolfgang Bluhm, Chris Bizon, Adam Godzik
, Philip E. Bourne:
Pre-calculated protein structure alignments at the RCSB PDB website. Bioinform. 26(23): 2983-2985 (2010) - [j80]J. Lynn Fink
, Pablo Fernicola, Rahul Chandran, Savas Parastatidis, Alex D. Wade
, Oscar Naim, Greg B. Quinn, Philip E. Bourne:
Word add-in for ontology recognition: semantic enrichment of scientific literature. BMC Bioinform. 11: 103 (2010) - [j79]Andreas Prlic
, Marco A. Martinez, Dimitris Dimitropoulos, Bojan Beran, Benjamin T. Yukich, Peter W. Rose
, Philip E. Bourne, J. Lynn Fink
:
Integration of open access literature into the RCSB Protein Data Bank using BioLit. BMC Bioinform. 11: 220 (2010) - [j78]Kieran Alden
, Stella Veretnik, Philip E. Bourne:
dConsensus: a tool for displaying domain assignments by multiple structure-based algorithms and for construction of a consensus assignment. BMC Bioinform. 11: 310 (2010) - [j77]Jingyuan Ren, Lei Xie, Wilfred W. Li, Philip E. Bourne:
SMAP-WS: a parallel web service for structural proteome-wide ligand-binding site comparison. Nucleic Acids Res. 38(Web-Server-Issue): 441-444 (2010) - [j76]Jacob D. Durrant
, Rommie E. Amaro, Lei Xie, Michael D. Urbaniak
, Michael A. J. Ferguson
, Antti Haapalainen, Zhijun Chen, Anne Marie Di Guilmi
, Frank Wunder
, Philip E. Bourne, James Andrew McCammon:
A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology. PLoS Comput. Biol. 6(1) (2010) - [j75]Philip E. Bourne, Bojan Beran, Chunxiao Bi, Wolfgang Bluhm, Roland L. Dunbrack Jr.
, Andreas Prlic
, Greg B. Quinn, Peter W. Rose
, Raship Shah, Wendy Tao, Brian D. Weitzner
, Benjamin T. Yukich:
Will Widgets and Semantic Tagging Change Computational Biology? PLoS Comput. Biol. 6(2) (2010) - [j74]Rosemary Dickin, Cecy Marden, Catherine Nancarrow, Philip E. Bourne:
A Review of 2009 for PLoS Computational Biology. PLoS Comput. Biol. 6(2) (2010) - [j73]Ruchira S. Datta, Matthew W. Lux, Philip E. Bourne:
PLoS Computational Biology Conference Postcards from PSB 2010. PLoS Comput. Biol. 6(4) (2010) - [j72]Philip E. Bourne:
What Do I Want from the Publisher of the Future? PLoS Comput. Biol. 6(5) (2010) - [j71]Roger L. Chang
, Li Xie, Lei Xie, Philip E. Bourne, Bernhard Ø. Palsson:
Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model. PLoS Comput. Biol. 6(9) (2010) - [j70]Sarah L. Kinnings, Li Xie, Kingston H. Fung, Richard M. Jackson, Lei Xie, Philip E. Bourne:
The Mycobacterium tuberculosis Drugome and Its Polypharmacological Implications. PLoS Comput. Biol. 6(11) (2010)
2000 – 2009
- 2009
- [j69]Lei Xie, Li Xie, Philip E. Bourne:
A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery. Bioinform. 25(12) (2009) - [j68]Evie Browne
, Rosemary Dickin, Philip E. Bourne:
A Review of 2008 for PLoS Computational Biology. PLoS Comput. Biol. 5(1) (2009) - [j67]Stella Veretnik, Christopher Wills, Philippe Youkharibache, Ruben E. Valas, Philip E. Bourne:
Sm/Lsm Genes Provide a Glimpse into the Early Evolution of the Spliceosome. PLoS Comput. Biol. 5(3) (2009) - [j66]Quentin Vicens
, Philip E. Bourne:
Ten Simple Rules To Combine Teaching and Research. PLoS Comput. Biol. 5(4) (2009) - [j65]Li Xie, Jerry Li
, Lei Xie, Philip E. Bourne:
Drug Discovery Using Chemical Systems Biology: Identification of the Protein-Ligand Binding Network To Explain the Side Effects of CETP Inhibitors. PLoS Comput. Biol. 5(5) (2009) - [j64]Sarah L. Kinnings, Nina Liu, Nancy Buchmeier, Peter J. Tonge
, Lei Xie, Philip E. Bourne:
Drug Discovery Using Chemical Systems Biology: Repositioning the Safe Medicine Comtan to Treat Multi-Drug and Extensively Drug Resistant Tuberculosis. PLoS Comput. Biol. 5(7) (2009) - [j63]Alex Bateman
, Philip E. Bourne:
Ten Simple Rules for Chairing a Scientific Session. PLoS Comput. Biol. 5(9) (2009) - 2008
- [j62]Julia V. Ponomarenko
, Huynh-Hoa Bui, Wei Li, Nicholas Fusseder, Philip E. Bourne, Alessandro Sette, Björn Peters:
ElliPro: a new structure-based tool for the prediction of antibody epitopes. BMC Bioinform. 9 (2008) - [j61]Stefan Günther, Michael Kuhn, Mathias Dunkel
, Monica Campillos
, Christian Senger, Evangelia Petsalaki
, Jessica Ahmed, Eduardo Garcia Urdiales, Andreas Gewiess, Lars Juhl Jensen
, Reinhard Schneider, Roman Skoblo, Robert B. Russell
, Philip E. Bourne, Peer Bork
, Robert Preissner
:
SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Res. 36(Database-Issue): 919-922 (2008) - [j60]Raphael A. Bauer, Philip E. Bourne, Arno Formella, Cornelius Frömmel, Christoph Gille, Andrean Goede
, Aysam Guerler, Andreas Hoppe
, Ernst-Walter Knapp, Thorsten Pöschel, Burghardt Wittig, Valentin Ziegler, Robert Preissner
:
Superimposé: a 3D structural superposition server. Nucleic Acids Res. 36(Web-Server-Issue): 47-54 (2008) - [j59]J. Lynn Fink
, Sergey Kushch, Parker R. Williams, Philip E. Bourne:
BioLit: integrating biological literature with databases. Nucleic Acids Res. 36(Web-Server-Issue): 385-389 (2008) - [j58]Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus
, Sune Frankild
, Jason Greenbaum, Ole Lund
, Claus Lundegaard, Morten Nielsen
, Julia V. Ponomarenko
, Alessandro Sette, Zhanyang Zhu, Björn Peters:
Immune epitope database analysis resource (IEDB-AR). Nucleic Acids Res. 36(Web-Server-Issue): 513-518 (2008) - [j57]Philip E. Bourne, J. Lynn Fink
, Mark Gerstein:
Open Access: Taking Full Advantage of the Content. PLoS Comput. Biol. 4(3) (2008) - [j56]Manuel Corpas
, Nils Gehlenborg
, Sarath Chandra Janga
, Philip E. Bourne:
Ten Simple Rules for Organizing a Scientific Meeting. PLoS Comput. Biol. 4(6) (2008) - [j55]Stella Veretnik, J. Lynn Fink
, Philip E. Bourne:
Computational Biology Resources Lack Persistence and Usability. PLoS Comput. Biol. 4(7) (2008) - [j54]Philip E. Bourne, J. Lynn Fink
:
I Am Not a Scientist, I Am a Number. PLoS Comput. Biol. 4(12) (2008) - [c19]K. Bretonnel Cohen, Hong Yu, Philip E. Bourne, Lynette Hirschman:
Session Introduction. Pacific Symposium on Biocomputing 2008: 551-555 - [c18]J. Gregory Caporaso, Nita Deshpande, J. Lynn Fink, Philip E. Bourne, K. Bretonnel Cohen, Lawrence Hunter:
Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks. Pacific Symposium on Biocomputing 2008: 640-651 - 2007
- [j53]Jo-Lan Chung, John E. Beaver, Eric D. Scheeff, Philip E. Bourne:
Con-Struct Map: a comparative contact map analysis tool. Bioinform. 23(18): 2491-2492 (2007) - [j52]Jo-Lan Chung, Wei Wang, Philip E. Bourne:
High-throughput identification of interacting protein-protein binding sites. BMC Bioinform. 8 (2007) - [j51]Jenny Gu, Philip E. Bourne:
Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2. BMC Bioinform. 8 (2007) - [j50]Lei Xie, Philip E. Bourne:
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites. BMC Bioinform. 8(S-4) (2007) - [j49]Quentin Vicens
, Philip E. Bourne:
Ten Simple Rules for a Successful Collaboration. PLoS Comput. Biol. 3(3) (2007) - [j48]Philip E. Bourne:
Ten Simple Rules for Making Good Oral Presentations. PLoS Comput. Biol. 3(4) (2007) - [j47]Thomas C. Erren, Philip E. Bourne:
Ten Simple Rules for a Good Poster Presentation. PLoS Comput. Biol. 3(5) (2007) - [j46]Lawrence Hunter
, Russ B. Altman, Philip E. Bourne:
The International Society for Computational Biology 10th Anniversary. PLoS Comput. Biol. 3(6) (2007) - [j45]Philip E. Bourne, Steven E. Brenner:
Developing Computational Biology. PLoS Comput. Biol. 3(9) (2007) - [j44]Thomas C. Erren, Paul Cullen, Michael Erren, Philip E. Bourne:
Ten Simple Rules for Doing Your Best Research, According to Hamming. PLoS Comput. Biol. 3(10) (2007) - [j43]Jenny Gu, Philip E. Bourne:
Ten Simple Rules for Graduate Students. PLoS Comput. Biol. 3(11) (2007) - [j42]