![](https://dblp.dagstuhl.de/img/logo.ua.320x120.png)
![](https://dblp.dagstuhl.de/img/dropdown.dark.16x16.png)
![](https://dblp.dagstuhl.de/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp.dagstuhl.de/img/search.dark.16x16.png)
![search dblp](https://dblp.dagstuhl.de/img/search.dark.16x16.png)
default search action
Thomas Dandekar
Person information
- affiliation: University of Würzburg, Germany
Refine list
![note](https://dblp.dagstuhl.de/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
- [b1]Thomas Dandekar, Meik Kunz:
Bioinformatics - An Introductory Textbook. Springer 2023, ISBN 978-3-662-65035-6, pp. 3-351 - 2022
- [j54]Tim Breitenbach
, Matthias Jürgen Schmitt, Thomas Dandekar
:
Optimization of synthetic molecular reporters for a mesenchymal glioblastoma transcriptional program by integer programing. Bioinform. 38(17): 4162-4171 (2022) - 2021
- [j53]Juan Pablo Prada, Gaby Wangorsch, Kirstin Kucka, Isabell Lang
, Thomas Dandekar
, Harald Wajant:
A systems-biology model of the tumor necrosis factor (TNF) interactions with TNF receptor 1 and 2. Bioinform. 37(5): 669-676 (2021) - 2020
- [j52]Meik Kunz, Julian Jeromin, Maximilian Fuchs
, Jan Christoph, Giulia Veronesi, Michael Flentje, Sarah Nietzer, Gudrun Dandekar, Thomas Dandekar:
In silico signaling modeling to understand cancer pathways and treatment responses. Briefings Bioinform. 21(3): 1115-1117 (2020) - [j51]Meik Kunz, Beat Wolf
, Maximilian Fuchs
, Jan Christoph, Ke Xiao, Thomas Thum, David Atlan, Hans-Ulrich Prokosch, Thomas Dandekar:
A comprehensive method protocol for annotation and integrated functional understanding of lncRNAs. Briefings Bioinform. 21(4): 1391-1396 (2020) - [j50]Sergey Shityakov
, Elena Bencurova
, Carola Förster, Thomas Dandekar:
Modeling of shotgun sequencing of DNA plasmids using experimental and theoretical approaches. BMC Bioinform. 21(1): 132 (2020)
2010 – 2019
- 2019
- [j49]Tim Breitenbach, Chunguang Liang, Niklas Beyersdorf, Thomas Dandekar
:
Analyzing pharmacological intervention points: A method to calculate external stimuli to switch between steady states in regulatory networks. PLoS Comput. Biol. 15(7) (2019) - 2018
- [j48]Juan Prada, Manju Sasi, Corinna Martin, Sibylle Jablonka
, Thomas Dandekar
, Robert Blum
:
An open source tool for automatic spatiotemporal assessment of calcium transients and local 'signal-close-to-noise' activity in calcium imaging data. PLoS Comput. Biol. 14(3) (2018) - [c8]Beat Wolf, Pierre Kuonen, Thomas Dandekar:
Meta-Alignment: Combining Sequence Aligners for Better Results. IWBBIO (1) 2018: 395-404 - 2017
- [j47]Kristin Verena Kaltdorf, Katja Schulze, Frederik Helmprobst, Philip Kollmannsberger
, Thomas Dandekar
, Christian Stigloher:
FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms. PLoS Comput. Biol. 13(1) (2017) - [j46]Jan Ewald
, Martin Bartl, Thomas Dandekar
, Christoph Kaleta
:
Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. PLoS Comput. Biol. 13(2) (2017) - 2016
- [j45]Zeeshan Ahmed
, Saman Zeeshan
, Thomas Dandekar:
Mining biomedical images towards valuable information retrieval in biomedical and life sciences. Database J. Biol. Databases Curation 2016 (2016) - [j44]Zeeshan Ahmed
, Saman Zeeshan, Thomas Dandekar:
Mining biomedical images towards valuable information retrieval in biomedical and life sciences. Database J. Biol. Databases Curation 2016 (2016) - [j43]Meik Kunz, Chunguang Liang, Santosh Nilla, Alexander Cecil
, Thomas Dandekar:
The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development. Database J. Biol. Databases Curation 2016 (2016) - [c7]Beat Wolf, Pierre Kuonen, Thomas Dandekar:
GNATY: Optimized NGS Variant Calling and Coverage Analysis. IWBBIO 2016: 446-454 - 2015
- [j42]Zeeshan Ahmed
, Michel Mayr, Saman Zeeshan
, Thomas Dandekar
, Martin J. Mueller, Agnes Fekete:
Lipid-Pro: a computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms. Bioinform. 31(7): 1150-1153 (2015) - [i3]Zeeshan Ahmed, Thomas Dandekar:
MSL: Facilitating automatic and physical analysis of published scientific literature in PDF format. F1000Research 4: 1453 (2015) - 2014
- [j41]Thomas Dandekar
, Astrid Fieselmann, Saman Majeed, Zeeshan Ahmed
:
Software applications toward quantitative metabolic flux analysis and modeling. Briefings Bioinform. 15(1): 91-107 (2014) - [j40]Zeeshan Ahmed
, Saman Zeeshan
, Claudia Huber, Michael Hensel
, Dietmar Schomburg
, Richard Münch, Eva Eylert, Wolfgang Eisenreich, Thomas Dandekar
:
'Isotopo' a database application for facile analysis and management of mass isotopomer data. Database J. Biol. Databases Curation 2014 (2014) - [i2]Zeeshan Ahmed
, Saman Zeeshan
, Thomas Dandekar:
Developing sustainable software solutions for bioinformatics by the "Butterfly" paradigm. F1000Research 3: 71 (2014) - 2013
- [j39]Chunguang Liang, Beate Krüger, Thomas Dandekar
:
GoSynthetic database tool to analyse natural and engineered molecular processes. Database J. Biol. Databases Curation 2013 (2013) - [j38]Katja Schulze, Ulrich M. Tillich, Thomas Dandekar
, Marcus Frohme:
PlanktoVision - an automated analysis system for the identification of phytoplankton. BMC Bioinform. 14: 115 (2013) - [j37]Zeeshan Ahmed
, Saman Zeeshan
, Claudia Huber, Michael Hensel
, Dietmar Schomburg
, Richard Münch, Wolfgang Eisenreich, Thomas Dandekar
:
Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling. BMC Bioinform. 14: 218 (2013) - [j36]Stefan Karl
, Thomas Dandekar
:
Jimena: efficient computing and system state identification for genetic regulatory networks. BMC Bioinform. 14: 306 (2013) - [j35]Sergey Shityakov
, Winfried Neuhaus
, Thomas Dandekar, Carola Förster:
Analysing molecular polar surface descriptors to predict blood-brain barrier permeation. Int. J. Comput. Biol. Drug Des. 6(1/2): 146-156 (2013) - 2012
- [j34]Rebekka Schlatter, Nicole Philippi, Gaby Wangorsch
, Robert Pick, Oliver Sawodny, Christoph Borner, Jens Timmer, Michael Ederer, Thomas Dandekar
:
Integration of Boolean models exemplified on hepatocyte signal transduction. Briefings Bioinform. 13(3): 365-376 (2012) - [j33]Daniela Beisser, Stefan Brunkhorst, Thomas Dandekar
, Gunnar W. Klau
, Marcus T. Dittrich, Tobias Müller:
Robustness and accuracy of functional modules in integrated network analysis. Bioinform. 28(14): 1887-1894 (2012) - [j32]Daniela Beisser, Markus A. Grohme
, Joachim Kopka
, Marcus Frohme, Ralph O. Schill, Steffen Hengherr, Thomas Dandekar
, Gunnar W. Klau
, Marcus T. Dittrich, Tobias Müller:
Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. BMC Syst. Biol. 6: 72 (2012) - [j31]Zeeshan Ahmed, Thomas Dandekar, Saman Majeed:
Review: Semantic Web; Ontology Specific Languages for Web Application Development. Int. J. Web Appl. 4(1): 33-41 (2012) - 2011
- [j30]Gaby Wangorsch
, Elke Butt, Regina Mark, Katharina Hubertus, Jörg Geiger, Thomas Dandekar
, Marcus T. Dittrich:
Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets: feedback loops, titrated phosphorylations and pharmacological modulation. BMC Syst. Biol. 5: 178 (2011) - 2010
- [j29]Daniela Beisser, Gunnar W. Klau
, Thomas Dandekar
, Tobias Müller, Marcus T. Dittrich:
BioNet: an R-Package for the functional analysis of biological networks. Bioinform. 26(8): 1129-1130 (2010) - [j28]Yevhen Vainshtein
, Mayka Sanchez
, Alvis Brazma
, Matthias W. Hentze
, Thomas Dandekar
, Martina U. Muckenthaler
:
The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays. BMC Bioinform. 11: 112 (2010) - [i1]Zeeshan Ahmed
, Saman Majeed, Thomas Dandekar:
Towards Design and Implementation of a Language Technology based Information Processor for PDM Systems. CoRR abs/1008.1394 (2010)
2000 – 2009
- 2009
- [j27]Chunguang Liang, Alexander Schmid
, María José López-Sánchez, Andrés Moya
, Roy Gross
, Jörg Bernhardt, Thomas Dandekar
:
JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. BMC Bioinform. 10: 391 (2009) - [j26]Nicole Philippi, Dorothee Walter, Rebekka Schlatter, Karine Ferreira, Michael Ederer, Oliver Sawodny, Jens Timmer, Christoph Borner, Thomas Dandekar
:
Modeling system states in liver cells: Survival, apoptosis and their modifications in response to viral infection. BMC Syst. Biol. 3: 97 (2009) - 2008
- [j25]Matthias Wolf
, Benjamin Ruderisch, Thomas Dandekar
, Jörg Schultz, Tobias Müller:
ProfDistS: (profile-) distance based phylogeny on sequence - structure alignments. Bioinform. 24(20): 2401-2402 (2008) - [j24]Mark Kühnel, Luis S. Mayorga
, Thomas Dandekar
, Juilee Thakar, Roland Schwarz
, Elsa Anes
, Gareth Griffiths, Jens G. Reich:
Modelling phagosomal lipid networks that regulate actin assembly. BMC Syst. Biol. 2: 107 (2008) - [j23]Christian Selig, Matthias Wolf
, Tobias Müller, Thomas Dandekar
, Jörg Schultz:
The ITS2 Database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Res. 36(Database-Issue): 377-380 (2008) - [c6]Marcus T. Dittrich, Gunnar W. Klau
, Andreas Rosenwald, Thomas Dandekar
, Tobias Müller:
Identifying functional modules in protein-protein interaction networks: an integrated exact approach. ISMB 2008: 223-231 - 2007
- [j22]Roland Schwarz
, Chunguang Liang, Christoph Kaleta
, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, Gareth Griffiths, Stefan Schuster, Thomas Dandekar
:
Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinform. 8 (2007) - [j21]Daniel Gerlach, Matthias Wolf, Thomas Dandekar, Tobias Müller, Andreas Pokorny, Sven Rahmann:
Deep Metazoan Phylogeny. Silico Biol. 7(2): 151-154 (2007) - 2006
- [j20]Torben Friedrich, Birgit Pils, Thomas Dandekar
, Jörg Schultz, Tobias Müller:
Modelling interaction sites in protein domains with interaction profile hidden Markov models. Bioinform. 22(23): 2851-2857 (2006) - [j19]Chunguang Liang, Thomas Dandekar
:
inGeno - an integrated genome and ortholog viewer for improved genome to genome comparisons. BMC Bioinform. 7: 461 (2006) - [j18]Philipp N. Seibel, Jan Krüger, Sven Hartmeier, Knut Schwarzer, Kai Löwenthal, Henning Mersch, Thomas Dandekar
, Robert Giegerich:
XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinform. 7: 490 (2006) - [j17]Philipp N. Seibel, Tobias Müller, Thomas Dandekar
, Jörg Schultz, Matthias Wolf
:
4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinform. 7: 498 (2006) - [j16]Jörg Schultz, Tobias Müller, Marco Achtziger, Philipp N. Seibel, Thomas Dandekar
, Matthias Wolf
:
The internal transcribed spacer 2 database - a web server for (not only) low level phylogenetic analyses. Nucleic Acids Res. 34(Web-Server-Issue): 704-707 (2006) - 2005
- [j15]Peter Bengert, Thomas Dandekar
:
Current efforts in the analysis of RNAi and RNAi target genes. Briefings Bioinform. 6(1): 72-85 (2005) - [j14]Joachim Friedrich, Thomas Dandekar
, Matthias Wolf
, Tobias Müller:
ProfDist: a tool for the construction of large phylogenetic trees based on profile distances. Bioinform. 21(9): 2108-2109 (2005) - [j13]Roland Schwarz
, Patrick Musch, Axel von Kamp, Bernd Engels, R. Heiner Schirmer, Stefan Schuster, Thomas Dandekar
:
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. BMC Bioinform. 6: 135 (2005) - [j12]Matthias Wolf, Joachim Friedrich, Thomas Dandekar, Tobias Müller:
CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. Silico Biol. 5(3): 291-294 (2005) - [j11]Tobias Penzkofer
, Thomas Dandekar
, Tomasz Zemojtel:
L1Base: from functional annotation to prediction of active LINE-1 elements. Nucleic Acids Res. 33(Database-Issue): 498-500 (2005) - 2004
- [j10]Thomas Dandekar, Steffen Schmidt:
Metabolites, pathway flexibility. Silico Biol. 5(2): 103-110 (2004) - [j9]Helge Bertram, Thomas Dandekar:
Stoffwechselanalyse: Der Weg vom Genom zum metabolischen Netzwerk (Pathway Analysis: On the Route from Genomics to Metabolic Networks). it Inf. Technol. 46(1): 5-11 (2004) - [j8]Daniel Faller, Thomas Reinheckel
, Daniel Wenzler, Sascha Hagemann, Ke Xiao, Josef Honerkamp, Christoph Peters, Thomas Dandekar
, Jens Timmer:
An Open Source Protein Gel Documentation System for Proteome Analyses. J. Chem. Inf. Model. 44(1): 168-169 (2004) - [j7]M. Dünßer, R. Lampidis, Steffen Schmidt, Dietmar Seipel, Thomas Dandekar:
Integration of Data in Pathogenomics: Three Layers of cellular complexity and an XML-based Framework. J. Integr. Bioinform. 1(1) (2004) - [j6]Peter Bengert, Thomas Dandekar
:
Riboswitch finder tool for identification of riboswitch RNAs. Nucleic Acids Res. 32(Web-Server-Issue): 154-159 (2004) - 2003
- [j5]Peter Bengert, Thomas Dandekar
:
A software tool-box for analysis of regulatory RNA elements. Nucleic Acids Res. 31(13): 3441-3445 (2003) - [c5]Tobias Müller, Sven Rahmann, Thomas Dandekar, Matthias Wolf:
Robust estimation of the phylogeny of Chlorophyceae(Chlorophyta)based on profile distances. German Conference on Bioinformatics 2003: 97-101 - 2002
- [j4]Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch
, Thomas Dandekar
:
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. Bioinform. 18(2): 351-361 (2002) - [j3]Thomas Dandekar
, Fuli Du, R. Heiner Schirmer, Steffen Schmidt
:
Medical Target Prediction From Genome Sequence: Combining Different Sequence Analysis Algorithms with Expert Knowledge and Input From Artificial Intelligence Approaches. Comput. Chem. 26(1): 15-21 (2002) - [j2]Steffen Schmidt
, Peer Bork
, Thomas Dandekar
:
A Versatile Structural Domain Analysis Server Using Profile Weight Matrices. J. Chem. Inf. Comput. Sci. 42(2): 405-407 (2002) - [c4]Steffen Schmidt, Thomas Dandekar:
Metabolic Pathways. Gene Regulations and Metabolism 2002: 251-272 - 2000
- [c3]Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar:
Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. German Conference on Bioinformatics 2000: 115-120
1990 – 1999
- 1998
- [j1]Thomas Dandekar
, Katrin Beyer, Peer Bork
, Mary-Rose Kenealy, Kostas Pantopoulos, Matthias W. Hentze
, Vera Sonntag-Buck, Gilles Flouriot
, Frank Gannon, Sonja Schreiber:
Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches. Bioinform. 14(3): 271-278 (1998) - [c2]Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork:
Pathway alignment: Application in the comparative analysis of glycolysis. German Conference on Bioinformatics 1998 - 1997
- [c1]Thomas Dandekar, Katrin Beyer, Peer Bork, Vera Sonntag-Buck, Gilles Flouriot, Frank Gannon, W. Keller, Sonja Schreiber:
Systematic genomic screening and analysis of mRNA in the 5' and 3' untranslated region. German Conference on Bioinformatics 1997: 31-32
Coauthor Index
![](https://dblp.dagstuhl.de/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-05-08 20:59 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint