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ORCIDEran Halperin
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- affiliation: University of California, Berkeley, USA
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2020 – today
- 2024
[j51]Brunilda Balliu
, Chris Douglas, Darsol Seok, Liat Shenhav, Yue Wu, Doxa Chatzopoulou, William Kaiser, Victor Chen, Jennifer Kim, Sandeep Deverasetty, Inna Arnaudova, Robert Gibbons, Eliza Congdon, Michelle G. Craske, Nelson B. Freimer, Eran Halperin, Sriram Sankararaman, Jonathan Flint:
Personalized mood prediction from patterns of behavior collected with smartphones. npj Digit. Medicine 7(1) (2024)- [i6]Zixiang Chen, Jun Han, Yongqian Li, Yiwen Kou, Eran Halperin, Robert E. Tillman, Quanquan Gu:
Guided Discrete Diffusion for Electronic Health Record Generation. CoRR abs/2404.12314 (2024) - 2023
- [c42]Kevin Wu, Dominik Dahlem, Christopher Hane, Eran Halperin, James Zou:
Collecting data when missingness is unknown: a method for improving model performance given under-reporting in patient populations. CHIL 2023: 229-242 - [c41]Kailas Vodrahalli, Gregory D. Lyng, Brian L. Hill, Kimmo Kärkkäinen, Jeffrey Hertzberg, James Zou, Eran Halperin:
Understanding and Predicting the Effect of Environmental Factors on People with Type 2 Diabetes. CHIL 2023: 545-555 - [i5]Zhichao Yang, Sanjit Singh Batra, Joel Stremmel, Eran Halperin:
Surpassing GPT-4 Medical Coding with a Two-Stage Approach. CoRR abs/2311.13735 (2023) - [i4]Joel Stremmel, Ardavan Saeedi, Hamid Hassanzadeh, Sanjit S. Batra, Jeffrey Hertzberg, Jaime Murillo, Eran Halperin:
XAIQA: Explainer-Based Data Augmentation for Extractive Question Answering. CoRR abs/2312.03567 (2023) - 2022
- [j50]Leah Briscoe, Brunilda Balliu, Sriram Sankararaman, Eran Halperin, Nandita R. Garud:
Evaluating supervised and unsupervised background noise correction in human gut microbiome data. PLoS Comput. Biol. 18(2) (2022) - [c40]Joel Stremmel, Brian L. Hill, Jeffrey Hertzberg, Jaime Murillo, Llewelyn Allotey, Eran Halperin:
Extend and Explain: Interpreting Very Long Language Models. ML4H@NeurIPS 2022: 218-258 - [i3]Joel Stremmel, Brian L. Hill, Jeffrey Hertzberg, Jaime Murillo, Llewelyn Allotey, Eran Halperin:
Extend and Explain: Interpreting Very Long Language Models. CoRR abs/2209.01174 (2022) - 2021
- [j49]Elior Rahmani, Brandon Jew, Eran Halperin:
The Effect of Model Directionality on Cell-Type-Specific Differential DNA Methylation Analysis. Frontiers Bioinform. 1 (2021) - [j48]Béatrice S. Hasler, Daniel H. Landau, Yossi Hasson, Noa Schori-Eyal, Jonathan Giron, Jonathan Levy, Eran Halperin, Doron Friedman:
Virtual reality-based conflict resolution: The impact of immersive 360° video on changing view points and moral judgment in the context of violent intergroup conflict. New Media Soc. 23(8) (2021) - [j47]Nadav Rakocz, Jeffrey N. Chiang, Muneeswar G. Nittala, Giulia Corradetti, Liran Tiosano, Swetha Velaga, Michael Thompson, Brian L. Hill, Sriram Sankararaman, Jonathan L. Haines, Margaret A. Pericak-Vance, Dwight Stambolian, Srinivas R. Sadda, Eran Halperin:
Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging. npj Digit. Medicine 4 (2021) - 2020
- [j46]Tyler A. Joseph, Liat Shenhav, João B. Xavier, Eran Halperin, Itsik Pe'er:
Compositional Lotka-Volterra describes microbial dynamics in the simplex. PLoS Comput. Biol. 16(5) (2020)
2010 – 2019
- 2019
- [j45]Liat Shenhav, Ori Furman, Leah Briscoe, Mike Thompson, Justin D. Silverman, Itzhak Mizrahi, Eran Halperin:
Modeling the temporal dynamics of the gut microbial community in adults and infants. PLoS Comput. Biol. 15(6) (2019) - [c39]Mike Thompson, Zeyuan Johnson Chen, Elior Rahmani, Eran Halperin:
Distinguishing Biological from Technical Sources of Variation Using a Combination of Methylation Datasets. RECOMB 2019: 316-317 - 2018
- [j44]Roye Rozov, Gil Goldshlager, Eran Halperin, Ron Shamir:
Faucet: streaming de novo assembly graph construction. Bioinform. 34(1): 147-154 (2018) - [j43]Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin:
Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. J. Comput. Biol. 25(7): 794-808 (2018) - [c38]Elior Rahmani, Regev Schweiger, Saharon Rosset, Sriram Sankararaman, Eran Halperin:
Tensor Composition Analysis Detects Cell-Type Specific Associations in Epigenetic Studies. RECOMB 2018: 274-275 - 2017
- [j42]Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, Ron Shamir:
Recycler: an algorithm for detecting plasmids from de novo assembly graphs. Bioinform. 33(4): 475-482 (2017) - [j41]Elior Rahmani, Reut Yedidim, Liat Shenhav, Regev Schweiger, Omer Weissbrod, Noah Zaitlen, Eran Halperin:
GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. Bioinform. 33(12): 1870-1872 (2017) - [j40]Omer Weissbrod, Elior Rahmani, Regev Schweiger, Saharon Rosset, Eran Halperin:
Association testing of bisulfite-sequencing methylation data via a Laplace approximation. Bioinform. 33(14): i325-i332 (2017) - [c37]Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin, Eran Halperin:
A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference. RECOMB 2017: 207-223 - [c36]Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin:
Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. RECOMB 2017: 241-256 - 2015
- [j39]James Y. Zou, Eran Halperin, Esteban Gonzàlez Burchard, Sriram Sankararaman:
Inferring parental genomic ancestries using pooled semi-Markov processes. Bioinform. 31(12): 190-196 (2015) - [j38]Yael Baran, Eran Halperin:
A Note on the Relations Between Spatio-Genetic Models. J. Comput. Biol. 22(10): 905-917 (2015) - [c35]Yaron Margalit, Yael Baran, Eran Halperin:
Multiple-Ancestor Localization for Recently Admixed Individuals. WABI 2015: 121-135 - 2014
- [j37]Ya'ara Arkin, Elior Rahmani, Marcus E. Kleber, Reijo Laaksonen, Winfried März, Eran Halperin:
EPIQ - efficient detection of SNP-SNP epistatic interactions for quantitative traits. Bioinform. 30(12): 19-25 (2014) - [j36]Roye Rozov, Ron Shamir, Eran Halperin:
Fast lossless compression via cascading Bloom filters. BMC Bioinform. 15(S-9): S7 (2014) - [j35]Doron Shem-Tov, Eran Halperin:
Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE). PLoS Comput. Biol. 10(6) (2014) - 2013
- [j34]Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian E. Henderson, David Reich, Christopher A. Haiman, Esteban Gonzàlez Burchard, Eran Halperin:
Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinform. 29(11): 1407-1415 (2013) - [j33]Armin Töpfer, Osvaldo Zagordi, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel:
Probabilistic Inference of Viral Quasispecies Subject to Recombination. J. Comput. Biol. 20(2): 113-123 (2013) - [j32]Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin:
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. J. Comput. Biol. 20(3): 224-236 (2013) - [j31]Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Christine F. Skibola, Eleazar Eskin, Eran Halperin:
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. J. Comput. Biol. 20(11): 861-877 (2013) - [c34]Itamar Eskin, Farhad Hormozdiari, Lucía Conde, Jacques Riby, Chris Skibola, Eleazar Eskin, Eran Halperin:
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. RECOMB 2013: 32-44 - [c33]Roy Ronen, Nitin Udpa, Eran Halperin, Vineet Bafna:
Learning Natural Selection from the Site Frequency Spectrum. RECOMB 2013: 230-233 - 2012
- [j30]Yael Baran, Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Esteban Gonzàlez Burchard, Eran Halperin:
Fast and accurate inference of local ancestry in Latino populations. Bioinform. 28(10): 1359-1367 (2012) - [j29]Roye Rozov, Eran Halperin, Ron Shamir:
MGMR: leveraging RNA-Seq population data to optimize expression estimation. BMC Bioinform. 13(S-6): S2 (2012) - [j28]Anatoly Efros, Eran Halperin:
Haplotype reconstruction using perfect phylogeny and sequence data. BMC Bioinform. 13(S-6): S3 (2012) - [j27]Yael Baran, Eran Halperin:
Joint Analysis of Multiple Metagenomic Samples. PLoS Comput. Biol. 8(2) (2012) - [c32]Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin:
CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. RECOMB 2012: 326-340 - [c31]Osvaldo Zagordi, Armin Töpfer, Sandhya Prabhakaran, Volker Roth, Eran Halperin, Niko Beerenwinkel:
Probabilistic Inference of Viral Quasispecies Subject to Recombination. RECOMB 2012: 342-354 - 2011
- [j26]Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin:
Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinform. 12(S-6): S2 (2011) - [j25]Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin:
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. J. Comput. Biol. 18(3): 459-468 (2011) - [j24]Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin:
Pedigree Reconstruction Using Identity by Descent. J. Comput. Biol. 18(11): 1481-1493 (2011) - [c30]Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin:
Pedigree Reconstruction Using Identity by Descent. RECOMB 2011: 136-152 - 2010
- [j23]Roy Ronen, Ido Gan, Shira Modai, Alona Sukacheov, Gideon Dror, Eran Halperin, Noam Shomron:
miRNAkey: a software for microRNA deep sequencing analysis. Bioinform. 26(20): 2615-2616 (2010) - [j22]Bonnie Kirkpatrick, Eran Halperin, Richard M. Karp:
Haplotype Inference in Complex Pedigrees. J. Comput. Biol. 17(3): 269-280 (2010) - [c29]Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin:
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. RECOMB 2010: 397-409
2000 – 2009
- 2009
- [j21]Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin:
Inference of locus-specific ancestry in closely related populations. Bioinform. 25(12) (2009) - [j20]Ofir Davidovich, Eran Halperin, Gad Kimmel, Ron Shamir:
Increasing the Power of Association Studies by Imputation-based Sparse Tag SNP Selection. Commun. Inf. Syst. 9(3): 269-282 (2009) - [c28]Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp:
Haplotype Inference in Complex Pedigrees. RECOMB 2009: 108-120 - 2008
- [c27]Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan:
On the Inference of Ancestries in Admixed Populations. RECOMB 2008: 424-433 - 2007
- [j19]Bonnie Kirkpatrick, Carlos Santos Armendariz, Richard M. Karp, Eran Halperin:
HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling. Bioinform. 23(22): 3048-3055 (2007) - [j18]Eran Halperin, Guy Kortsarz, Robert Krauthgamer, Aravind Srinivasan, Nan Wang:
Integrality Ratio for Group Steiner Trees and Directed Steiner Trees. SIAM J. Comput. 36(5): 1494-1511 (2007) - [j17]Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz:
Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice. IEEE ACM Trans. Comput. Biol. Bioinform. 4(4): 561-571 (2007) - [c26]Srinath Sridhar, Satish Rao, Eran Halperin:
An Efficient and Accurate Graph-Based Approach to Detect Population Substructure. RECOMB 2007: 503-517 - [c25]Kamalika Chaudhuri, Eran Halperin, Satish Rao, Shuheng Zhou:
A rigorous analysis of population stratification with limited data. SODA 2007: 1046-1055 - 2006
- [j16]Eleazar Eskin, Roded Sharan, Eran Halperin:
A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions. J. Bioinform. Comput. Biol. 4(3): 639-648 (2006) - [j15]Eran Halperin, Elad Hazan:
HAPLOFREQ-Estimating Haplotype Frequencies Efficiently. J. Comput. Biol. 13(2): 481-500 (2006) - [j14]Rajiv Gandhi, Eran Halperin, Samir Khuller, Guy Kortsarz, Aravind Srinivasan:
An improved approximation algorithm for vertex cover with hard capacities. J. Comput. Syst. Sci. 72(1): 16-33 (2006) - [c24]Eran Halperin:
SNP and Haplotype Analysis - Algorithms and Applications. CPM 2006: 11-11 - [c23]Guy E. Blelloch, Kedar Dhamdhere, Eran Halperin, R. Ravi, Russell Schwartz, Srinath Sridhar:
Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction. ICALP (1) 2006: 667-678 - [c22]Srinath Sridhar, Kedar Dhamdhere, Guy E. Blelloch, Eran Halperin, R. Ravi, Russell Schwartz:
Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees. International Conference on Computational Science (2) 2006: 799-806 - 2005
- [j13]Julia Chuzhoy, Sudipto Guha, Eran Halperin, Sanjeev Khanna, Guy Kortsarz, Robert Krauthgamer, Joseph Naor:
Asymmetric k-center is log* n-hard to approximate. J. ACM 52(4): 538-551 (2005) - [j12]Edith Cohen, Eran Halperin, Haim Kaplan:
Performance aspects of distributed caches using TTL-based consistency. Theor. Comput. Sci. 331(1): 73-96 (2005) - [j11]Eran Halperin, Richard M. Karp:
The minimum-entropy set cover problem. Theor. Comput. Sci. 348(2-3): 240-250 (2005) - [c21]Eran Halperin, Gad Kimmel, Ron Shamir:
Tag SNP selection in genotype data for maximizing SNP prediction accuracy. ISMB (Supplement of Bioinformatics) 2005: 195-203 - [c20]Eran Halperin, Elad Hazan:
HAPLOFREQ - Estimating Haplotype Frequencies E.ciently. RECOMB 2005: 553-568 - 2004
- [j10]Eran Halperin, Eleazar Eskin:
Haplotype reconstruction from genotype data using Imperfect Phylogeny. Bioinform. 20(12): 1842-1849 (2004) - [j9]Eran Halperin, Dror Livnat, Uri Zwick:
MAX CUT in cubic graphs. J. Algorithms 53(2): 169-185 (2004) - [c19]Eran Halperin, Richard M. Karp:
The Minimum-Entropy Set Cover Problem. ICALP 2004: 733-744 - [c18]Eran Halperin, Richard M. Karp:
Perfect phylogeny and haplotype assignment. RECOMB 2004: 10-19 - [c17]Julia Chuzhoy, Sudipto Guha, Eran Halperin, Sanjeev Khanna, Guy Kortsarz, Joseph Naor:
Asymmetric k-center is log* n-hard to approximate. STOC 2004: 21-27 - 2003
- [j8]Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir:
Handling Long Targets and Errors in Sequencing by Hybridization. J. Comput. Biol. 10(3/4): 483-497 (2003) - [j7]Edith Cohen, Eran Halperin, Haim Kaplan, Uri Zwick:
Reachability and Distance Queries via 2-Hop Labels. SIAM J. Comput. 32(5): 1338-1355 (2003) - [c16]Rajiv Gandhi, Eran Halperin, Samir Khuller, Guy Kortsarz, Aravind Srinivasan:
An Improved Approximation Algorithm for Vertex Cover with Hard Capacities. ICALP 2003: 164-175 - [c15]Eran Halperin, Jeremy Buhler, Richard M. Karp, Robert Krauthgamer, Ben Westover:
Detecting protein sequence conservation via metric embeddings. ISMB (Supplement of Bioinformatics) 2003: 122-129 - [c14]Eleazar Eskin, Eran Halperin, Richard M. Karp:
Large scale reconstruction of haplotypes from genotype data. RECOMB 2003: 104-113 - [c13]Eran Halperin, Guy Kortsarz, Robert Krauthgamer, Aravind Srinivasan, Nan Wang:
Integrality ratio for group Steiner trees and directed steiner trees. SODA 2003: 275-284 - [c12]Micah Adler, Eran Halperin, Richard M. Karp, Vijay V. Vazirani:
A stochastic process on the hypercube with applications to peer-to-peer networks. STOC 2003: 575-584 - [c11]Eran Halperin, Robert Krauthgamer:
Polylogarithmic inapproximability. STOC 2003: 585-594 - [i2]Eran Halperin, Guy Kortsarz, Robert Krauthgamer:
Tight lower bounds for the asymmetric k-center problem. Electron. Colloquium Comput. Complex. TR03 (2003) - 2002
- [j6]Eran Halperin, Ram Nathaniel, Uri Zwick:
Coloring k-colorable graphs using relatively small palettes. J. Algorithms 45(1): 72-90 (2002) - [j5]Eran Halperin, Uri Zwick:
A unified framework for obtaining improved approximation algorithms for maximum graph bisection problems. Random Struct. Algorithms 20(3): 382-402 (2002) - [j4]Eran Halperin:
Improved Approximation Algorithms for the Vertex Cover Problem in Graphs and Hypergraphs. SIAM J. Comput. 31(5): 1608-1623 (2002) - [c10]Eran Halperin, Aravind Srinivasan:
Improved Approximation Algorithms for the Partial Vertex Cover Problem. APPROX 2002: 161-174 - [c9]Eran Halperin, Shay Halperin, Tzvika Hartman, Ron Shamir:
Handling long targets and errors in sequencing by hybridization. RECOMB 2002: 176-185 - [c8]Eran Halperin, Dror Livnat, Uri Zwick:
MAX CUT in cubic graphs. SODA 2002: 506-513 - [c7]Edith Cohen, Eran Halperin, Haim Kaplan, Uri Zwick:
Reachability and distance queries via 2-hop labels. SODA 2002: 937-946 - 2001
- [j3]Eran Halperin, Uri Zwick:
Approximation Algorithms for MAX 4-SAT and Rounding Procedures for Semidefinite Programs. J. Algorithms 40(2): 184-211 (2001) - [c6]Edith Cohen, Eran Halperin, Haim Kaplan:
Performance Aspects of Distributed Caches Using TTL-Based Consistency. ICALP 2001: 744-756 - [c5]Eran Halperin, Uri Zwick:
A Unified Framework for Obtaining Improved Approximation Algorithms for Maximum Graph Bisection Problems. IPCO 2001: 210-225 - [c4]Eran Halperin, Uri Zwick:
Combinatorial approximation algorithms for the maximum directed cut problem. SODA 2001: 1-7 - [c3]Eran Halperin, Ram Nathaniel, Uri Zwick:
Coloring k-colorable graphs using smaller palettes. SODA 2001: 319-326 - [i1]Eran Halperin, Ram Nathaniel, Uri Zwick:
Coloring k-colorable graphs using relatively small palettes. CoRR cs.DS/0105029 (2001) - 2000
- [c2]Eran Halperin:
Improved approximation algorithms for the vertex cover problem in graphs and hypergraphs. SODA 2000: 329-337
1990 – 1999
- 1999
- [j2]Eran Halperin, Simchon Faigler, Raveh Gill-More:
FramePlus: aligning DNA to protein sequences. Bioinform. 15(11): 867-873 (1999) - [c1]Eran Halperin, Uri Zwick:
Approximation Algorithms for MAX 4-SAT and Rounding Procedures for Semidefinite Programs. IPCO 1999: 202-217 - 1998
- [j1]Noga Alon, Eran Halperin:
Bipartite subgraphs of integer weighted graphs. Discret. Math. 181(1-3): 19-29 (1998)
Coauthor Index
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