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ORCIDLawrence Hunter
Lawrence E. Hunter
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- affiliation: University of Colorado School of Medicine, Denver, USA
- affiliation: University of Chicago, USA
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2020 – today
- 2024
[j57]Adrien Bibal, Nourah M. Salem, Rémi Cardon, Elizabeth K. White, Daniel E. Acuna, Robin Burke, Lawrence E. Hunter:
RecSOI: recommending research directions using statements of ignorance. J. Biomed. Semant. 15(1): 2 (2024)- [c85]Sagi Shaier, Lawrence Hunter, Katharina von der Wense:
It Is Not About What You Say, It Is About How You Say It: A Surprisingly Simple Approach for Improving Reading Comprehension. ACL (Findings) 2024: 8292-8305 - [c84]Sagi Shaier, Kevin Bennett, Lawrence Hunter, Katharina von der Wense:
Comparing Template-based and Template-free Language Model Probing. EACL (1) 2024: 766-776 - [c83]Sagi Shaier, Lawrence Hunter, Katharina von der Wense:
Desiderata For The Context Use Of Question Answering Systems. EACL (1) 2024: 777-792 - [i14]Sagi Shaier, Lawrence E. Hunter, Katharina von der Wense:
Desiderata for the Context Use of Question Answering Systems. CoRR abs/2401.18001 (2024) - [i13]Sagi Shaier, Kevin Bennett, Lawrence E. Hunter, Katharina von der Wense:
Comparing Template-based and Template-free Language Model Probing. CoRR abs/2402.00123 (2024) - [i12]Sagi Shaier, Lawrence E. Hunter, Katharina von der Wense:
It Is Not About What You Say, It Is About How You Say It: A Surprisingly Simple Approach for Improving Reading Comprehension. CoRR abs/2406.16779 (2024) - [i11]Sagi Shaier, Francisco Pereira, Katharina von der Wense, Lawrence E. Hunter, Matt Jones:
More Experts Than Galaxies: Conditionally-overlapping Experts With Biologically-Inspired Fixed Routing. CoRR abs/2410.08003 (2024) - 2023
- [j56]Mayla R. Boguslav
, Nourah M. Salem, Elizabeth K. White, Katherine J. Sullivan, Michael Bada, Teri L. Hernandez, Sonia M. Leach, Lawrence E. Hunter:
Creating an ignorance-base: Exploring known unknowns in the scientific literature. J. Biomed. Informatics 143: 104405 (2023) - [j55]Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin Aaron Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn:
Ontologizing health systems data at scale: making translational discovery a reality. npj Digit. Medicine 6 (2023) - [c82]Sagi Shaier, Lawrence Hunter, Katharina Kann:
Who Are All The Stochastic Parrots Imitating? They Should Tell Us! IJCNLP (2) 2023: 113-120 - [c81]Sagi Shaier, Kevin Bennett, Lawrence Hunter, Katharina Kann:
Emerging Challenges in Personalized Medicine: Assessing Demographic Effects on Biomedical Question Answering Systems. IJCNLP (1) 2023: 540-550 - [i10]Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter:
An Open-Source Knowledge Graph Ecosystem for the Life Sciences. CoRR abs/2307.05727 (2023) - [i9]Hector Zenil, Jesper Tegnér, Felipe S. Abrahão, Alexander Lavin, Vipin Kumar, Jeremy G. Frey, Adrian Weller, Larisa N. Soldatova, Alan R. Bundy, Nicholas R. Jennings, Koichi Takahashi, Lawrence Hunter, Saso Dzeroski, Andrew Briggs, Frederick D. Gregory, Carla P. Gomes, Christopher K. I. Williams, Jon Rowe, James A. Evans, Hiroaki Kitano, Joshua B. Tenenbaum, Ross D. King:
The Future of Fundamental Science Led by Generative Closed-Loop Artificial Intelligence. CoRR abs/2307.07522 (2023) - [i8]Sagi Shaier, Kevin Bennett, Lawrence Hunter, Katharina von der Wense:
Emerging Challenges in Personalized Medicine: Assessing Demographic Effects on Biomedical Question Answering Systems. CoRR abs/2310.10571 (2023) - [i7]Sagi Shaier, Lawrence E. Hunter, Katharina von der Wense:
Who Are All The Stochastic Parrots Imitating? They Should Tell Us! CoRR abs/2310.10583 (2023) - 2022
- [j54]Nansu Zong, Ning Li, Andrew Wen, Victoria Ngo, Yue Yu, Ming Huang, Shaika Chowdhury, Chao Jiang, Sunyang Fu, Richard Weinshilboum, Guoqian Jiang, Lawrence Hunter, Hongfang Liu:
BETA: a comprehensive benchmark for computational drug-target prediction. Briefings Bioinform. 23(4) (2022) - [j53]Brook E. Santangelo, Lucas A. Gillenwater, Nourah M. Salem, Lawrence E. Hunter:
Molecular cartooning with knowledge graphs. Frontiers Bioinform. 2 (2022) - [c80]Tiffany J. Callahan, Adrianne L. Stefanski, Danielle Ostendorf, Jordan M. Wyrwa, Sara J. Deakyne Davies, George Hripcsak, Lawrence Hunter, Michael G. Kahn:
Characterizing Patient Representations for Computational Phenotyping. AMIA 2022 - [i6]Tiffany J. Callahan, Adrianne L. Stefanski, Jin-Dong Kim, William A. Baumgartner Jr., Jordan M. Wyrwa, Lawrence E. Hunter:
Knowledge-Driven Mechanistic Enrichment of the Preeclampsia Ignorome. CoRR abs/2207.14294 (2022) - [i5]Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Melissa A. Haendel, Asiyah Y. Lin, Blake Martin, Nicolas Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingman A. Zhang, Peter N. Robinson, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Lawrence E. Hunter, Michael G. Kahn:
Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality. CoRR abs/2209.04732 (2022) - [i4]Sagi Shaier, Lawrence Hunter, Katharina Kann:
Mind the Knowledge Gap: A Survey of Knowledge-enhanced Dialogue Systems. CoRR abs/2212.09252 (2022) - 2021
- [j52]Mayla Boguslav, Negacy D. Hailu, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter:
Concept recognition as a machine translation problem. BMC Bioinform. 22(1): 598 (2021) - [c79]Katherine J. Sullivan, Marisha Burden, Angela Keniston, Juan M. Banda, Lawrence E. Hunter:
Characterization of Anonymous Physician Perspectives on COVID-19 Using Social Media Data. PSB 2021 - 2020
- [e24]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein:
Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021. WorldScientific 2020, ISBN 9789811232695 [contents] - [i3]Cliff A. Joslyn, Sinan Aksoy, Tiffany J. Callahan, Lawrence E. Hunter, Brett A. Jefferson, Brenda Praggastis, Emilie A. H. Purvine, Ignacio J. Tripodi:
Hypernetwork Science: From Multidimensional Networks to Computational Topology. CoRR abs/2003.11782 (2020)
2010 – 2019
- 2019
- [j51]Xingmin Aaron Zhang, Amy Yates, Nicole A. Vasilevsky, Jean-Philippe F. Gourdine, Tiffany J. Callahan, Leigh C. Carmody, Daniel Danis, Marcin P. Joachimiak, Vida Ravanmehr, Emily R. Pfaff, James Champion, Kimberly Robasky, Hao Xu, Karamarie Fecho, Nephi A. Walton, Richard L. Zhu, Justin Ramsdill, Christopher J. Mungall, Sebastian Köhler, Melissa A. Haendel, Clement J. McDonald, Daniel J. Vreeman, David B. Peden, Tellen D. Bennett, James A. Feinstein, Blake Martin, Adrianne L. Stefanski, Lawrence E. Hunter, Christopher G. Chute, Peter N. Robinson:
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery. npj Digit. Medicine 2 (2019) - [c78]William A. Baumgartner Jr., Michael Bada, Sampo Pyysalo, Manuel R. Ciosici, Negacy D. Hailu, Harrison Pielke-Lombardo, Michael Regan, Lawrence Hunter:
CRAFT Shared Tasks 2019 Overview - Integrated Structure, Semantics, and Coreference. BioNLP-OST@EMNLP-IJNCLP 2019: 174-184 - [c77]K. Bretonnel Cohen, Lawrence E. Hunter, Peter S. Pressman:
P-Hacking Lexical Richness Through Definitions of "Type" and "Token". MedInfo 2019: 1433-1434 - [e23]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2019. 2019 [contents] - [i2]Tiffany J. Callahan, Harrison Pielke-Lombardo, Ignacio J. Tripodi, Lawrence E. Hunter:
Knowledge-based Biomedical Data Science 2019. CoRR abs/1910.06710 (2019) - 2018
- [c76]K. Bretonnel Cohen, Jingbo Xia, Pierre Zweigenbaum, Tiffany Callahan, Orin Hargraves, Foster R. Goss, Nancy Ide, Aurélie Névéol, Cyril Grouin, Lawrence E. Hunter:
Three Dimensions of Reproducibility in Natural Language Processing. LREC 2018 - [c75]Tiffany J. Callahan, William A. Baumgartner Jr., Michael Bada, Adrianne L. Stefanski, Ignacio Tripodi, Elizabeth K. White, Lawrence E. Hunter:
OWL-NETS: Transforming OWL representations for improved network inference. PSB 2018: 133-144 - [c74]Mayla Boguslav, K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence E. Hunter:
Improving precision in concept normalization. PSB 2018: 566-577 - [e22]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2018. 2018 [contents] - 2017
- [j50]Michael Bada, Nicole A. Vasilevsky, William A. Baumgartner Jr., Melissa A. Haendel, Lawrence E. Hunter:
Gold-standard ontology-based anatomical annotation in the CRAFT Corpus. Database J. Biol. Databases Curation 2017: bax087 (2017) - [j49]K. Bretonnel Cohen, Arrick Lanfranchi, Miji Joo-young Choi, Michael Bada, William A. Baumgartner Jr., Natalya Panteleyeva, Karin Verspoor, Martha Palmer, Lawrence E. Hunter:
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. BMC Bioinform. 18(1): 372:1-372:14 (2017) - [j48]Lawrence E. Hunter:
Knowledge-based biomedical Data Science. Data Sci. 1(1-2): 19-25 (2017) - [c73]Kevin Bretonnel Cohen, Aurélie Névéol, Jingbo Xia, Negacy D. Hailu, Cyril Grouin, Lawrence E. Hunter, Pierre Zweigenbaum:
Reproducibility in Biomedical Natural Language Processing. AMIA 2017 - [c72]Ignacio Tripodi, Kevin Bretonnel Cohen, Lawrence E. Hunter:
A semantic knowledge-base approach to drug-drug interaction discovery. BIBM 2017: 1123-1126 - [c71]K. Bretonnel Cohen, Foster R. Goss, Pierre Zweigenbaum, Lawrence E. Hunter:
Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles. MedInfo 2017: 346-350 - [c70]Prabha Yadav, Elisabetta Jezek, Pierrette Bouillon, Tiffany J. Callahan, Michael Bada, Lawrence E. Hunter, K. Bretonnel Cohen:
Semantic Relations in Compound Nouns: Perspectives from Inter-Annotator Agreement. MedInfo 2017: 644-648 - [c69]Jason H. Moore, Steven F. Jennings, Casey S. Greene, Lawrence E. Hunter, Andy D. Perkins, ClarLynda R. Williams-DeVane, Donald C. Wunsch, Zhongming Zhao, Xiuzhen Huang:
No-Boundary Thinking in Bioinformatics. PSB 2017: 646-648 - [e21]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017. 2017 [contents] - 2016
- [j47]Christopher S. Funk, K. Bretonnel Cohen, Lawrence E. Hunter, Karin M. Verspoor:
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition. J. Biomed. Semant. 7: 52 (2016) - [c68]Michael Bada, Nicole A. Vasilevsky, Melissa A. Haendel, Lawrence Hunter:
Gold-Standard Ontology-Based Annotation of Concepts in Biomedical Text in the CRAFT Corpus: Updates and Extensions. ICBO/BioCreative 2016 - [e20]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016. 2016 [contents] - 2015
- [j46]Stefano V. Albrecht, André da Motta Salles Barreto, Darius Braziunas, David L. Buckeridge, Heriberto Cuayáhuitl, Nina Dethlefs, Markus Endres, Amir-massoud Farahmand, Mark Fox, Lutz Frommberger, Sam Ganzfried, Yolanda Gil, Sébastien Guillet, Lawrence E. Hunter, Arnav Jhala, Kristian Kersting, George Dimitri Konidaris, Freddy Lécué, Sheila A. McIlraith, Sriraam Natarajan, Zeinab Noorian, David Poole, Rémi Ronfard, Alessandro Saffiotti, Arash Shaban-Nejad, Biplav Srivastava, Gerald Tesauro, Rosario Uceda-Sosa, Guy Van den Broeck, Martijn van Otterlo, Byron C. Wallace, Paul Weng, Jenna Wiens, Jie Zhang:
Reports of the AAAI 2014 Conference Workshops. AI Mag. 36(1): 87-98 (2015) - [j45]Kevin M. Livingston, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter:
KaBOB: ontology-based semantic integration of biomedical databases. BMC Bioinform. 16: 126:1-126:21 (2015) - [j44]Corinna Vehlow, David P. Kao, Michael R. Bristow, Lawrence E. Hunter, Daniel Weiskopf, Carsten Görg:
Visual analysis of biological data-knowledge networks. BMC Bioinform. 16: 135:1-135:15 (2015) - [c67]Darla Hewett, Michelle Whirl Carrillo, Lawrence E. Hunter, Russ B. Altman, Teri E. Klein:
A Twentieth Anniversary Tribute to PSB. Pacific Symposium on Biocomputing 2015: 1-7 - [c66]Michael A. Hinterberg, David P. Kao, Michael R. Bristow, Lawrence E. Hunter, J. David Port, Carsten Görg:
PEAX: Interactive Visual Analysis and Exploration of Complex Clinical Phenotype and Gene Expression Association. Pacific Symposium on Biocomputing 2015: 419-430 - [c65]Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore:
Training the Next Generation of Quantitative Biologists in the Era of Big Data. Pacific Symposium on Biocomputing 2015: 488-492 - [e19]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015. 2015 [contents] - 2014
- [j43]Christopher S. Funk, William A. Baumgartner Jr., Benjamin Garcia, Christophe Roeder, Michael Bada, K. Bretonnel Cohen, Lawrence E. Hunter, Karin Verspoor:
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. BMC Bioinform. 15: 59 (2014) - [j42]Sheelagh Carpendale, Min Chen, Daniel Evanko, Nils Gehlenborg, Carsten Görg, Lawrence Hunter, Francis Rowland, Margaret-Anne D. Storey, Hendrik Strobelt:
Ontologies in Biological Data Visualization. IEEE Computer Graphics and Applications 34(2): 8-15 (2014) - [c64]Negacy D. Hailu, K. Bretonnel Cohen, Lawrence E. Hunter:
Ontology Translation: A Case Study on Translating the Gene Ontology from English to German. NLDB 2014: 33-38 - [c63]Christopher S. Funk, Lawrence E. Hunter, K. Bretonnel Cohen:
Combining Heterogenous Data for Prediction of Disease Related and Pharmacogenes. Pacific Symposium on Biocomputing 2014: 328-339 - [c62]Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Lawrence E. Hunter, David A. Ross, James A. Foster, Jason H. Moore:
Building the Next Generation of Quantitative Biologists. Pacific Symposium on Biocomputing 2014: 417-421 - [e18]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2014. 2014 [contents] - 2013
- [j41]Kevin M. Livingston, Michael Bada, Lawrence E. Hunter, Karin Verspoor:
Representing annotation compositionality and provenance for the Semantic Web. J. Biomed. Semant. 4: 38 (2013) - [j40]K. Bretonnel Cohen, Lawrence E. Hunter:
Chapter 16: Text Mining for Translational Bioinformatics. PLoS Comput. Biol. 9(4) (2013) - [j39]Lawrence E. Hunter:
Rocky Mountain Conference on Bioinformatics Celebrates 10 Years. PLoS Comput. Biol. 9(5) (2013) - [c61]Lawrence Hunter:
Computational Challenges of Mass Phenotyping. Pacific Symposium on Biocomputing 2013: 454-455 - [c60]Negacy D. Hailu, Lawrence E. Hunter, K. Bretonnel Cohen:
UColorado_SOM: Extraction of Drug-Drug Interactions from Biomedical Text using Knowledge-rich and Knowledge-poor Features. SemEval@NAACL-HLT 2013: 684-688 - [e17]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013. World Scientific Publishing 2013, ISBN 978-1-62748-016-1 [contents] - 2012
- [j38]Michael Bada, Miriam Eckert, Donald Evans, Kristin Garcia, Krista Shipley, Dmitry Sitnikov, William A. Baumgartner Jr., K. Bretonnel Cohen, Karin Verspoor, Judith A. Blake, Lawrence E. Hunter:
Concept annotation in the CRAFT corpus. BMC Bioinform. 13: 161 (2012) - [j37]Karin Verspoor, Kevin Bretonnel Cohen, Arrick Lanfranchi, Colin Warner, Helen L. Johnson, Christophe Roeder, Jinho D. Choi, Christopher S. Funk, Yuriy Malenkiy, Miriam Eckert, Nianwen Xue, William A. Baumgartner Jr., Michael Bada, Martha Palmer, Lawrence E. Hunter:
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinform. 13: 207 (2012) - [j36]Casimir A. Kulikowski, Edward H. Shortliffe, Leanne M. Currie, Peter L. Elkin, Lawrence E. Hunter, Todd R. Johnson, Ira J. Kalet, Leslie A. Lenert, Mark A. Musen, Judy G. Ozbolt, Jack W. Smith, Peter Tarczy-Hornoch, Jeffrey J. Williamson:
AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline. J. Am. Medical Informatics Assoc. 19(6): 931-938 (2012) - [c59]Timothy W. Clark, William W. Cohen, Lawrence Hunter, Chris J. Lintott, Jude W. Shavlik:
Invited Talks. AAAI Fall Symposium: Discovery Informatics 2012 - [c58]K. Bretonnel Cohen, Lawrence E. Hunter, Martha Palmer:
Assessment of Software Testing and Quality Assurance in Natural Language Processing Applications and a Linguistically Inspired Approach to Improving It. EternalS@ECAI 2012: 77-90 - [e16]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2012. World Scientific Publishing 2012, ISBN 978-1-61839-811-6 [contents] - [i1]Carsten Görg, Lawrence Hunter, Jessie Kennedy, Seán I. O'Donoghue, Jarke J. van Wijk:
Biological Data Visualization (Dagstuhl Seminar 12372). Dagstuhl Reports 2(9): 131-164 (2012) - 2011
- [j35]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - [j34]K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Hannah J. Tipney, Lawrence Hunter:
High-Precision Biological Event Extraction: Effects of System and of Data. Comput. Intell. 27(4): 681-701 (2011) - [j33]Yoshinobu Kano, Makoto Miwa, K. Bretonnel Cohen, Lawrence Hunter, Sophia Ananiadou, Jun'ichi Tsujii:
U-Compare: A modular NLP workflow construction and evaluation system. IBM J. Res. Dev. 55(3): 11 (2011) - [j32]Michael Bada, Lawrence Hunter:
Desiderata for ontologies to be used in semantic annotation of biomedical documents. J. Biomed. Informatics 44(1): 94-101 (2011) - [c57]K. Bretonnel Cohen, Lawrence Hunter, Martha Palmer:
A scaleable automated quality assurance technique for semantic representations and proposition banks. Linguistic Annotation Workshop 2011: 82-91 - [c56]K. Bretonnel Cohen, Tom Christiansen, William A. Baumgartner Jr., Karin Verspoor, Lawrence Hunter:
Fast and simple semantic class assignment for biomedical text. BioNLP@ACL 2011: 38-45 - [c55]Elizabeth K. White, K. Bretonnel Cohen, Lawrence Hunter:
Hypothesis and Evidence Extraction from Full-Text Scientific Journal Articles. BioNLP@ACL 2011: 134-135 - [c54]K. Bretonnel Cohen, Tom Christiansen, Lawrence E. Hunter:
MetaMap is a Superior Baseline to a Standard Document Retrieval Engine for the Task of Finding Patient Cohorts in Clinical Free Text. TREC 2011 - [e15]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011. World Scientific Publishing 2011, ISBN 978-981-4335-04-1 [contents] - 2010
- [j31]Christophe Roeder, Clément Jonquet, Nigam H. Shah, William A. Baumgartner Jr., Karin Verspoor, Lawrence Hunter:
A UIMA wrapper for the NCBO annotator. Bioinform. 26(14): 1800-1801 (2010) - [j30]K. Bretonnel Cohen, Helen L. Johnson, Karin Verspoor, Christophe Roeder, Lawrence Hunter:
The structural and content aspects of abstracts versus bodies of full text journal articles are different. BMC Bioinform. 11: 492 (2010) - [j29]Yves A. Lussier, Atul J. Butte, Lawrence Hunter:
Current methodologies for translational bioinformatics. J. Biomed. Informatics 43(3): 355-357 (2010) - [j28]Karin Verspoor, Christophe Roeder, Helen L. Johnson, K. Bretonnel Cohen, William A. Baumgartner Jr., Lawrence Hunter:
Exploring Species-Based Strategies for Gene Normalization. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 462-471 (2010) - [c53]Michael Bada, Miriam Eckert, Martha Palmer, Lawrence Hunter:
An Overview of the CRAFT Concept Annotation Guidelines. Linguistic Annotation Workshop 2010: 207-211 - [c52]Carsten Görg, Hannah J. Tipney, Karin Verspoor, William A. Baumgartner Jr., K. Bretonnel Cohen, John T. Stasko, Lawrence Hunter:
Visualization and Language Processing for Supporting Analysis across the Biomedical Literature. KES (4) 2010: 420-429 - [c51]K. Bretonnel Cohen, Christophe Roeder, William A. Baumgartner Jr., Lawrence Hunter, Karin Verspoor:
Test Suite Design for Biomedical Ontology Concept Recognition Systems. LREC 2010 - [c50]Adrien Coulet, Nigam H. Shah, Lawrence Hunter, Chitta Baral, Russ B. Altman:
Extraction of Genotype-Phenotype-Drug Relationships from Text: From Entity Recognition to Bioinformatics Application. Pacific Symposium on Biocomputing 2010: 485-487 - [c49]Kevin M. Livingston, Helen L. Johnson, Karin Verspoor, Lawrence Hunter:
Leveraging Gene Ontology Annotations to Improve a Memory-Based Language Understanding System. ICSC 2010: 40-45 - [e14]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010. World Scientific Publishing 2010, ISBN 978-981-4295-29-1 [contents]
2000 – 2009
- 2009
- [j27]Karin Verspoor, Daniel Dvorkin, K. Bretonnel Cohen, Lawrence Hunter:
Ontology quality assurance through analysis of term transformations. Bioinform. 25(12) (2009) - [j26]Yoshinobu Kano, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun'ichi Tsujii:
U-Compare: share and compare text mining tools with UIMA. Bioinform. 25(15): 1997-1998 (2009) - [j25]Hannah J. Tipney, Sonia M. Leach, Weiguo Feng, Richard A. Spritz, Trevor Williams, Lawrence Hunter:
Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology. BMC Bioinform. 10(S-2) (2009) - [j24]Karin Verspoor, K. Bretonnel Cohen, Lawrence Hunter:
The textual characteristics of traditional and Open Access scientific journals are similar. BMC Bioinform. 10 (2009) - [j23]Edward H. Shortliffe, Andrea Califano, Lawrence Hunter:
New JBI emphasis on translational bioinformatics. J. Biomed. Informatics 42(2): 199-200 (2009) - [j22]Sonia M. Leach, Hannah J. Tipney, Weiguo Feng, William A. Baumgartner Jr., Priyanka Kasliwal, Ronald P. Schuyler, Trevor Williams, Richard A. Spritz, Lawrence Hunter:
Biomedical Discovery Acceleration, with Applications to Craniofacial Development. PLoS Comput. Biol. 5(3) (2009) - [c48]K. Bretonnel Cohen, Karin Verspoor, Helen L. Johnson, Christophe Roeder, Philip V. Ogren, William A. Baumgartner Jr., Elizabeth K. White, Lawrence Hunter:
High-precision biological event extraction with a concept recognizer. BioNLP@HLT-NAACL (Shared Task) 2009: 50-58 - [c47]John T. Stasko, Sarah Cohen, Lawrence Hunter, Joe Parry:
How interactive visualization can assist investigative analysis: Views and perspectives from domain experts. IEEE VAST 2009: 279-281 - [e13]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009. 2009, ISBN 978-981-283-692-2 [contents] - 2008
- [j21]Michael Bada, Lawrence Hunter:
Identification of OBO nonalignments and its implications for OBO enrichment. Bioinform. 24(12): 1448-1455 (2008) - [j20]Steven Bethard, Zhiyong Lu, James H. Martin, Lawrence Hunter:
Semantic role labeling for protein transport predicates. BMC Bioinform. 9 (2008) - [j19]Aaron Gabow, Sonia M. Leach, William A. Baumgartner Jr., Lawrence Hunter, Debra Goldberg:
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