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ORCIDGustavo Stolovitzky
2020 – today
- 2024
[i4]Magali Richard, Yuna Blum, Justin Guinney, Gustavo Stolovitzky, Adrien Pavão:
AI Competitions and Benchmarks, Practical issues: Proposals, grant money, sponsors, prizes, dissemination, publicity. CoRR abs/2401.04452 (2024)- 2023
- [i3]Gustavo Stolovitzky, Julio Saez-Rodriguez, Julie Bletz, Jacob Albrecht, Gaia Andreoletti, James C. Costello, Paul C. Boutros:
AI Competitions and Benchmarks: The life cycle of challenges and benchmarks. CoRR abs/2312.05296 (2023) - 2022
- [e1]Marco Ciccone, Gustavo Stolovitzky, Jacob Albrecht:
NeurIPS 2022 Competition Track, November 28 - December 9, 2022, Online. Proceedings of Machine Learning Research 220, PMLR 2022 [contents] - 2021
- [c10]Marco Ciccone, Gustavo Stolovitzky, Jacob Albrecht:
NeurIPS 2022 Competition Track Revised Selected Papers. NeurIPS (Competition and Demos) 2021: i - 2020
- [j24]Mehmet Eren Ahsen, Robert M. Vogel, Gustavo A. Stolovitzky:
R/PY-SUMMA: An R/Python Package for Unsupervised Ensemble Learning for Binary Classification Problems in Bioinformatics. J. Comput. Biol. 27(9): 1337-1340 (2020) - [c9]Mehmet Eren Ahsen, Yoojin Chun, Alexander Grishin, Galina Grishina, Gustavo Stolovitzky, Gaurav Pandey, Supinda Bunyavanich:
NeTFactor, a framework for identifying transcriptional regulators of gene expression-based biomarkers. BCB 2020: 18:1-18:13
2010 – 2019
- 2019
- [j23]Mehmet Eren Ahsen, Robert M. Vogel, Gustavo A. Stolovitzky:
Unsupervised Evaluation and Weighted Aggregation of Ranked Classification Predictions. J. Mach. Learn. Res. 20: 166:1-166:40 (2019) - 2018
- [c8]Xintong Chen, Sander M. Houten, Kimaada Allette, Robert P. Sebra, Gustavo Stolovitzky, Bojan Losic:
Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology. PSB 2018: 8-19 - [c7]Carla Agurto
, Pat Pataranutaporn, Elif K. Eyigöz, Gustavo Stolovitzky, Guillermo A. Cecchi:
Predictive Linguistic Markers of Suicidality in Poets. ICSC 2018: 282-285 - [i2]Mehmet Eren Ahsen, Robert M. Vogel, Gustavo Stolovitzky:
Unsupervised Evaluation and Weighted Aggregation of Ranked Predictions. CoRR abs/1802.04684 (2018) - 2016
- [j22]Rob Patro, Raquel Norel, Robert J. Prill, Julio Saez-Rodriguez, Peter Lorenz, Felix Steinbeck, Bjoern Ziems, Mitja Lustrek, Nicola Barbarini, Alessandra Tiengo, Riccardo Bellazzi, Hans-Jürgen Thiesen, Gustavo Stolovitzky, Carl Kingsford:
A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin. BMC Bioinform. 17: 155 (2016) - [j21]David Noren, Byron Long, Raquel Norel, Kahn Rhrissorrakrai, Kenneth R. Hess, Chenyue W. Hu, Alex Bisberg, André Schultz, Erik Engquist, Li Liu, Xihui Lin, Gregory M. Chen, Honglei Xie, Geoffrey A. M. Hunter, Paul C. Boutros, Oleg A. Stepanov, DREAM 9 AML-OPC Consortium, Thea Norman, Stephen H. Friend, Gustavo Stolovitzky, Steven M. Kornblau, Amina A. Qutub:
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis. PLoS Comput. Biol. 12(6) (2016) - 2015
- [j20]Kahn Rhrissorrakrai, Vincenzo Belcastro, Erhan Bilal, Raquel Norel, Carine Poussin, Carole Mathis, Rémi H. J. Dulize, Nikolai V. Ivanov, Leonidas G. Alexopoulos, John Jeremy Rice, Manuel C. Peitsch, Gustavo Stolovitzky, Pablo Meyer, Julia Hoeng:
Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge. Bioinform. 31(4): 471-483 (2015) - [j19]Erhan Bilal, Theodore Sakellaropoulos, Challenge Participants, Ioannis N. Melas, Dimitris E. Messinis, Vincenzo Belcastro, Kahn Rhrissorrakrai, Pablo Meyer, Raquel Norel, Anita Iskandar, Elise Blaese, John Jeremy Rice, Manuel C. Peitsch, Julia Hoeng, Gustavo Stolovitzky, Leonidas G. Alexopoulos, Carine Poussin:
A crowd-sourcing approach for the construction of species-specific cell signaling networks. Bioinform. 31(4): 484-491 (2015) - [j18]Andrea Califano, Manolis Kellis, Gustavo Stolovitzky:
Preface: RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2014 Special Issue. J. Comput. Biol. 22(4): 251-252 (2015) - [j17]Jonathan R. Karr, Alex H. Williams, Jeremy D. Zucker, Andreas Raue, Bernhard Steiert, Jens Timmer, Clemens Kreutz, Simon Wilkinson, Brandon A. Allgood, Brian M. Bot, Bruce R. Hoff, Michael R. Kellen, Markus W. Covert, Gustavo A. Stolovitzky, Pablo Meyer:
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models. PLoS Comput. Biol. 11(5) (2015) - [i1]Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez:
DREAMTools: a Python package for scoring collaborative challenges. F1000Research 4: 1030 (2015) - 2014
- [j16]Pablo Meyer, Thomas Cokelaer, Deepak Chandran, Kyung Hyuk Kim, Po-Ru Loh, George Tucker, Mark Lipson, Bonnie Berger, Clemens Kreutz, Andreas Raue, Bernhard Steiert, Jens Timmer, Erhan Bilal, Herbert M. Sauro, Gustavo Stolovitzky, Julio Saez-Rodriguez:
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach. BMC Syst. Biol. 8: 13 (2014) - [j15]Pablo Meyer, Guillermo A. Cecchi, Gustavo Stolovitzky:
Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria. BMC Syst. Biol. 8: 131 (2014) - [j14]Andrea Califano, Manolis Kellis, Gustavo Stolovitzky:
RECOMB/ISCB Systems Biology, Regulatory Genomics, and DREAM 2013 Special Issue. J. Comput. Biol. 21(5): 371-372 (2014) - [c6]David Noren, Steven M. Kornblau, Chenyue W. Hu, Byron Long, Alex Bisberg, Raquel Norel, Gustavo Stolovitzky, Amina A. Qutub:
DREAM 9: An Acute Myeloid Leukemia Prediction Big Data Challenge. ICBO 2014: 108-109 - 2013
- [j13]Adi L. Tarca, Mario Lauria, Michael Unger, Erhan Bilal, Stéphanie Boué, Kushal Kumar Dey, Julia Hoeng, Heinz Koeppl, Florian Martin, Pablo Meyer, Preetam Nandy, Raquel Norel, Manuel C. Peitsch, John Jeremy Rice, Roberto Romero, Gustavo Stolovitzky, Marja Talikka, Yang Xiang, Christoph Zechner, Improver Dsc Collaborators:
Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinform. 29(22): 2892-2899 (2013) - [j12]Andrea Califano, Manolis Kellis, Gustavo Stolovitzky:
Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2012 Special Issue. J. Comput. Biol. 20(5): 373-374 (2013) - [j11]Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A. Logsdon, Gaurav Pandey, Benjamin A. Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H. Mecham, Oscar M. Rueda, Jorg Tost, Christina Curtis, Mariano J. Alvarez, Vessela N. Kristensen, Samuel Aparicio, Anne-Lise Børresen-Dale, Carlos Caldas, Andrea Califano, Stephen H. Friend, Trey Ideker, Eric E. Schadt, Gustavo A. Stolovitzky, Adam A. Margolin:
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling. PLoS Comput. Biol. 9(5) (2013) - 2012
- [j10]Pablo Meyer, Julia Hoeng, John Jeremy Rice, Raquel Norel, Jörg Sprengel, Katrin Stolle, Thomas Bonk, Stephanie Corthesy, Ajay K. Royyuru, Manuel C. Peitsch, Gustavo Stolovitzky:
Industrial methodology for process verification in research (IMPROVER): toward systems biology verification. Bioinform. 28(9): 1193-1201 (2012) - [j9]Andrea Califano, Manolis Kellis, Gustavo Stolovitzky:
Preface: RECOMB Systems Biology, Regulatory Genomics, and DREAM 2011 Special Issue. J. Comput. Biol. 19(2): 101 (2012)
2000 – 2009
- 2008
- [j8]Peicheng Du, Gustavo Stolovitzky, Peter Horvatovich, Rainer Bischoff, Jihyeon Lim, Frank Suits:
A noise model for mass spectrometry based proteomics. Bioinform. 24(8): 1070-1077 (2008) - [j7]John Wagner, Gustavo Stolovitzky:
Stability and Time-Delay Modeling of Negative Feedback Loops. Proc. IEEE 96(8): 1398-1410 (2008) - 2007
- [j6]Haiyuan Yu, Ronald Jansen, Gustavo Stolovitzky, Mark Gerstein:
Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications. Bioinform. 23(16): 2163-2173 (2007) - [j5]Adam A. Margolin, Teresa Palomero, Adolfo A. Ferrando, Andrea Califano, Gustavo Stolovitzky:
ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding. BMC Bioinform. 8(S-8) (2007) - 2006
- [j4]Adam A. Margolin, Ilya Nemenman, Katia Basso, Chris Wiggins, Gustavo Stolovitzky, Riccardo Dalla Favera, Andrea Califano:
ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context. BMC Bioinform. 7(S-1) (2006) - 2005
- [j3]John Jeremy Rice, Yuhai Tu, Gustavo Stolovitzky:
Reconstructing biological networks using conditional correlation analysis. Bioinform. 21(6): 765-773 (2005) - [c5]Gabriela Alexe, Gyan Bhanot, Babu Venkataraghavan, Ramakrishna Ramaswamy, Jorge Lepre, Arnold J. Levine, Gustavo Stolovitzky:
A Robust Meta-classification Strategy for Cancer Diagnosis from Gene Expression Data. CSB 2005: 322-325 - 2004
- [j2]Jorge Lepre, John Jeremy Rice, Yuhai Tu, Gustavo Stolovitzky:
Genes@Work: an efficient algorithm for pattern discovery and multivariate feature selection in gene expression data. Bioinform. 20(7): 1033-1044 (2004) - 2003
- [c4]Nigam Shah, Jorge Lepre, Yuhai Tu, Gustavo Stolovitzky:
Can We Identify Cellular Pathways Implicated in Cancer Using Gene Expression Data? CSB 2003: 94-103 - 2000
- [j1]Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano:
Systematic and Fully Automated Identification of Protein Sequence Patterns. J. Comput. Biol. 7(3-4): 585-600 (2000) - [c3]Andrea Califano, Gustavo Stolovitzky, Yuhai Tu:
Analysis of Gene Expression Microarrays for Phenotype Classification. ISMB 2000: 75-85 - [c2]Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano:
Systematic and automated discovery of patterns in PROSITE families. RECOMB 2000: 147-154
1990 – 1999
- 1999
- [c1]Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustavo Stolovitzky, Yuan Gao:
Sequence homology detection through large scale pattern discovery. RECOMB 1999: 164-169
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