:facetid:toc:\"db/journals/bioinformatics/bioinformatics17.bht\"OK:facetid:toc:db/journals/bioinformatics/bioinformatics17.bhtJohn AachGeorge M. ChurchAligning gene expression time series with time warping algorithms.Bioinform.176495-5082001Journal Articlesclosedjournals/bioinformatics/AachC0110.1093/BIOINFORMATICS/17.6.495https://doi.org/10.1093/bioinformatics/17.6.495https://dblp.org/rec/journals/bioinformatics/AachC01URL#6319206Gonçalo R. AbecasisStacey S. ChernyW. O. C. CooksonLon R. CardonGRR: graphical representation of relationship errors.Bioinform.178742-7432001Journal Articlesclosedjournals/bioinformatics/AbecasisCCC0110.1093/BIOINFORMATICS/17.8.742https://doi.org/10.1093/bioinformatics/17.8.742https://dblp.org/rec/journals/bioinformatics/AbecasisCCC01URL#6319207Frédéric AchardGuy VaysseixEmmanuel BarillotXML, bioinformatics and data integration.Bioinform.171115-1252001Journal Articlesclosedjournals/bioinformatics/AchardVB0110.1093/BIOINFORMATICS/17.2.115https://doi.org/10.1093/bioinformatics/17.2.115https://dblp.org/rec/journals/bioinformatics/AchardVB01URL#6319208P. S. Umesh AdigaA. BhomraMaria Grazia TurriA. NicodS. R. DattaPeter Jeavons 0001Richard MottJonathan FlintAutomatic analysis of agarose gel images.Bioinform.17111084-10892001Journal Articlesclosedjournals/bioinformatics/AdigaBTNDJMF0110.1093/BIOINFORMATICS/17.11.1084https://doi.org/10.1093/bioinformatics/17.11.1084https://dblp.org/rec/journals/bioinformatics/AdigaBTNDJMF01URL#6319209Dmitry A. AfonnikovDmitry Yu. OshchepkovNikolay A. KolchanovDetection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions.Bioinform.17111035-10462001Journal Articlesclosedjournals/bioinformatics/AfonnikovOK0110.1093/BIOINFORMATICS/17.11.1035https://doi.org/10.1093/bioinformatics/17.11.1035https://dblp.org/rec/journals/bioinformatics/AfonnikovOK01URL#6319210Jonas S. AlmeidaJoão A. CarriçoAntónio MaretzekPeter A. NobleMadilyn FletcherAnalysis of genomic sequences by Chaos Game Representation.Bioinform.175429-4372001Journal Articlesclosedjournals/bioinformatics/AlmeidaCMNF0110.1093/BIOINFORMATICS/17.5.429https://doi.org/10.1093/bioinformatics/17.5.429https://dblp.org/rec/journals/bioinformatics/AlmeidaCMNF01URL#6319211Cécile AndréPierre VincensJean-François BoisvieuxSerge A. HazoutMOSAIC: segmenting multiple aligned DNA sequences.Bioinform.171196-1972001Journal Articlesclosedjournals/bioinformatics/AndreVBH0110.1093/BIOINFORMATICS/17.2.196https://doi.org/10.1093/bioinformatics/17.2.196https://dblp.org/rec/journals/bioinformatics/AndreVBH01URL#6319212Rolf ApweilerPaul J. KerseyVivien JunkerAmos BairochTechnical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al.Bioinform.176533-5342001Journal Articlesclosedjournals/bioinformatics/ApweilerKJB0110.1093/BIOINFORMATICS/17.6.533https://doi.org/10.1093/bioinformatics/17.6.533https://dblp.org/rec/journals/bioinformatics/ApweilerKJB01URL#6319213Abdullah N. ArslanÖmer EgeciogluPavel A. PevznerA new approach to sequence comparison: normalized sequence alignment.Bioinform.174327-3372001Journal Articlesclosedjournals/bioinformatics/ArslanEP0110.1093/BIOINFORMATICS/17.4.327https://doi.org/10.1093/bioinformatics/17.4.327https://dblp.org/rec/journals/bioinformatics/ArslanEP01URL#6319214Prasith BaccamRobert J. ThompsonOlivier FedrigoSusan CarpenterJames L. CornettePAQ: Partition Analysis of Quasispecies.Bioinform.17116-222001Journal Articlesclosedjournals/bioinformatics/BaccamTFCC0110.1093/BIOINFORMATICS/17.1.16https://doi.org/10.1093/bioinformatics/17.1.16https://dblp.org/rec/journals/bioinformatics/BaccamTFCC01URL#6319215Pierre-François BaisnéePierre BaldiSøren BrunakAnders Gorm PedersenFlexibility of the genetic code with respect to DNA structure.Bioinform.173237-2482001Journal Articlesclosedjournals/bioinformatics/BaisneeBBP0110.1093/BIOINFORMATICS/17.3.237https://doi.org/10.1093/bioinformatics/17.3.237https://dblp.org/rec/journals/bioinformatics/BaisneeBBP01URL#6319216Paul I. W. de BakkerAlex BatemanDavid F. BurkeRicardo Núñez MiguelKenji MizuguchiJiye ShiHiroki ShiraiTom L. BlundellHOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.Bioinform.178748-7492001Journal Articlesclosedjournals/bioinformatics/BakkerBBMMSSB0110.1093/BIOINFORMATICS/17.8.748https://doi.org/10.1093/bioinformatics/17.8.748https://dblp.org/rec/journals/bioinformatics/BakkerBBMMSSB01URL#6319217Pierre BaldiAnthony D. LongA Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.Bioinform.176509-5192001Journal Articlesclosedjournals/bioinformatics/BaldiL0110.1093/BIOINFORMATICS/17.6.509https://doi.org/10.1093/bioinformatics/17.6.509https://dblp.org/rec/journals/bioinformatics/BaldiL01URL#6319218Malay Kumar BasuSeWeR: a customizable and integrated dynamic HTML interface to bioinformatics services.Bioinform.176577-5782001Journal Articlesclosedjournals/bioinformatics/Basu0110.1093/BIOINFORMATICS/17.6.577https://doi.org/10.1093/bioinformatics/17.6.577https://dblp.org/rec/journals/bioinformatics/Basu01URL#6319219Michael BaudisMichael L. ClearyProgenetix.net: an online repository for molecular cytogenetic aberration data.Bioinform.17121228-12292001Journal Articlesclosedjournals/bioinformatics/BaudisC0110.1093/BIOINFORMATICS/17.12.1228https://doi.org/10.1093/bioinformatics/17.12.1228https://dblp.org/rec/journals/bioinformatics/BaudisC01URL#6319220Moritz Y. BeckerIsabel RojasA graph layout algorithm for drawing metabolic pathwaysBioinform.175461-4672001Journal Articlesclosedjournals/bioinformatics/BeckerR0110.1093/BIOINFORMATICS/17.5.461https://doi.org/10.1093/bioinformatics/17.5.461https://dblp.org/rec/journals/bioinformatics/BeckerR01URL#6319221Gill BejeranoYevgeny SeldinHanah MargalitNaftali TishbyMarkovian domain fingerprinting: statistical segmentation of protein sequences.Bioinform.1710927-9342001Journal Articlesclosedjournals/bioinformatics/BejeranoSMT0110.1093/BIOINFORMATICS/17.10.927https://doi.org/10.1093/bioinformatics/17.10.927https://dblp.org/rec/journals/bioinformatics/BejeranoSMT01URL#6319222Gill BejeranoGolan YonaVariations on probabilistic suffix trees: statistical modeling and prediction of protein families.Bioinform.17123-432001Journal Articlesclosedjournals/bioinformatics/BejeranoY0110.1093/BIOINFORMATICS/17.1.23https://doi.org/10.1093/bioinformatics/17.1.23https://dblp.org/rec/journals/bioinformatics/BejeranoY01URL#6319223Jacek BlazewiczPiotr FormanowiczMarta KasprzakMarcin JaroszewskiWojciech T. MarkiewiczConstruction of DNA restriction maps based on a simplified experiment.Bioinform.175398-4042001Journal Articlesclosedjournals/bioinformatics/BlazewiczFKJM0110.1093/BIOINFORMATICS/17.5.398https://doi.org/10.1093/bioinformatics/17.5.398https://dblp.org/rec/journals/bioinformatics/BlazewiczFKJM01URL#6319224Joel R. BockDavid A. GoughPredicting protein-protein interactions from primary structure.Bioinform.175455-4602001Journal Articlesclosedjournals/bioinformatics/BockG0110.1093/BIOINFORMATICS/17.5.455https://doi.org/10.1093/bioinformatics/17.5.455https://dblp.org/rec/journals/bioinformatics/BockG01URL#6319225Michael V. BolandRobert F. MurphyA neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells.Bioinform.17121213-12232001Journal Articlesclosedjournals/bioinformatics/BolandM0110.1093/BIOINFORMATICS/17.12.1213https://doi.org/10.1093/bioinformatics/17.12.1213https://dblp.org/rec/journals/bioinformatics/BolandM01URL#6319226Eva BoltenAlexander SchliepSebastian SchneckenerDietmar SchomburgRainer SchraderClustering protein sequences-structure prediction by transitive homology.Bioinform.1710935-9412001Journal Articlesclosedjournals/bioinformatics/BoltenSSSS0110.1093/BIOINFORMATICS/17.10.935https://doi.org/10.1093/bioinformatics/17.10.935https://dblp.org/rec/journals/bioinformatics/BoltenSSSS01URL#6319227Mark BorodovskyEugene V. KooninChris BurgeJames W. FickettJohn LogsdonAndrej SaliGary D. StormoIgor B. ZhulinThe Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA).Bioinform.1710859-8612001Journal Articlesclosedjournals/bioinformatics/BorodovskyKBFLSSZ0110.1093/BIOINFORMATICS/17.10.859https://doi.org/10.1093/bioinformatics/17.10.859https://dblp.org/rec/journals/bioinformatics/BorodovskyKBFLSSZ01URL#6319228Stefania BortoluzziFabio d'AlessiChiara RomualdiGian Antonio DanieliDifferential expression of genes coding for ribosomal proteins in different human tissues.Bioinform.17121152-11572001Journal Articlesclosedjournals/bioinformatics/BortoluzzidRD0110.1093/BIOINFORMATICS/17.12.1152https://doi.org/10.1093/bioinformatics/17.12.1152https://dblp.org/rec/journals/bioinformatics/BortoluzzidRD01URL#6319229Alvis BrazmaOn the Importance of Standardisation in Life Sciences.Bioinform.171113-1142001Journal Articlesclosedjournals/bioinformatics/Brazma0110.1093/BIOINFORMATICS/17.2.113https://doi.org/10.1093/bioinformatics/17.2.113https://dblp.org/rec/journals/bioinformatics/Brazma01URL#6319230Fiona S. L. BrinkmanIvan WanRobert E. W. HancockAnn M. RoseSteven J. M. JonesPhyloBLAST: facilitating phylogenetic analysis of BLAST results.Bioinform.174385-3872001Journal Articlesclosedjournals/bioinformatics/BrinkmanWHRJ0110.1093/BIOINFORMATICS/17.4.385https://doi.org/10.1093/bioinformatics/17.4.385https://dblp.org/rec/journals/bioinformatics/BrinkmanWHRJ01URL#6319231Jeremy BuhlerEfficient large-scale sequence comparison by locality-sensitive hashing.Bioinform.175419-4282001Journal Articlesclosedjournals/bioinformatics/Buhler0110.1093/BIOINFORMATICS/17.5.419https://doi.org/10.1093/bioinformatics/17.5.419https://dblp.org/rec/journals/bioinformatics/Buhler01URL#6319232Janusz M. BujnickiArne ElofssonDaniel Fischer 0001Leszek RychlewskiStructure prediction meta server.Bioinform.178750-7512001Journal Articlesclosedjournals/bioinformatics/BujnickiEFR0110.1093/BIOINFORMATICS/17.8.750https://doi.org/10.1093/bioinformatics/17.8.750https://dblp.org/rec/journals/bioinformatics/BujnickiEFR01URL#6319233Yury V. BukhmanJeffrey SkolnickBioMolQuest: integrated database-based retrieval of protein structural and functional information.Bioinform.175468-4782001Journal Articlesclosedjournals/bioinformatics/BukhmanS0110.1093/BIOINFORMATICS/17.5.468https://doi.org/10.1093/bioinformatics/17.5.468https://dblp.org/rec/journals/bioinformatics/BukhmanS01URL#6319234Pierre R. BushelHisham HamadehLee BennettStella SieberKarla MartinEmile F. NuwaysirKate JohnsonKelli ReynoldsRichard S. PaulesCynthia A. AfshariMAPS: a microarray project system for gene expression experiment information and data validation.Bioinform.176564-5652001Journal Articlesclosedjournals/bioinformatics/BushelHBSMNJRPA0110.1093/BIOINFORMATICS/17.6.564https://doi.org/10.1093/bioinformatics/17.6.564https://dblp.org/rec/journals/bioinformatics/BushelHBSMNJRPA01URL#6319235Tony Y. T. ChanUnsupervised classification of noisy chromosomes.Bioinform.175438-4442001Journal Articlesclosedjournals/bioinformatics/Chan0110.1093/BIOINFORMATICS/17.5.438https://doi.org/10.1093/bioinformatics/17.5.438https://dblp.org/rec/journals/bioinformatics/Chan01URL#6319236Man-Suen ChanMartin C. J. MaidenBrian G. SprattDatabase-driven Multi Locus Sequence Typing (MLST) of bacterial pathogens.Bioinform.17111077-10832001Journal Articlesclosedjournals/bioinformatics/ChanMS0110.1093/BIOINFORMATICS/17.11.1077https://doi.org/10.1093/bioinformatics/17.11.1077https://dblp.org/rec/journals/bioinformatics/ChanMS01URL#6319237Hui-Hsien ChouMichael H. HolmesDNA sequence quality trimming and vector removal.Bioinform.17121093-11042001Journal Articlesclosedjournals/bioinformatics/ChouH0110.1093/BIOINFORMATICS/17.12.1093https://doi.org/10.1093/bioinformatics/17.12.1093https://dblp.org/rec/journals/bioinformatics/ChouH01URL#6319238Avril CoghlanDónall A. Mac DónaillNigel H. ButtimoreRepresentation of amino acids as five-bit or three-bit patterns for filtering protein databases.Bioinform.178676-6852001Journal Articlesclosedjournals/bioinformatics/CoghlanDB0110.1093/BIOINFORMATICS/17.8.676https://doi.org/10.1093/bioinformatics/17.8.676https://dblp.org/rec/journals/bioinformatics/CoghlanDB01URL#6319239Jacques ColingeGeorg FegerDetecting the impact of sequencing errors on SAGE data.Bioinform.179840-8422001Journal Articlesclosedjournals/bioinformatics/ColingeF0110.1093/BIOINFORMATICS/17.9.840https://doi.org/10.1093/bioinformatics/17.9.840https://dblp.org/rec/journals/bioinformatics/ColingeF01URL#6319240Richard M. R. CoulsonAnton J. EnrightChristos A. OuzounisTranscription-associated protein families are primarily taxon-specific.Bioinform.17195-972001Journal Articlesclosedjournals/bioinformatics/CoulsonEO0110.1093/BIOINFORMATICS/17.1.95https://doi.org/10.1093/bioinformatics/17.1.95https://dblp.org/rec/journals/bioinformatics/CoulsonEO01URL#6319241David G. CoxFederico CanzianGenotype transposer: automated genotype manipulation for linkage disequilibrium analysis.Bioinform.178738-7392001Journal Articlesclosedjournals/bioinformatics/CoxC0110.1093/BIOINFORMATICS/17.8.738https://doi.org/10.1093/bioinformatics/17.8.738https://dblp.org/rec/journals/bioinformatics/CoxC01URL#6319242Charlotte M. DeaneQuentin KaasTom L. BlundellSCORE: predicting the core of protein models.Bioinform.176541-5502001Journal Articlesclosedjournals/bioinformatics/DeaneKB0110.1093/BIOINFORMATICS/17.6.541https://doi.org/10.1093/bioinformatics/17.6.541https://dblp.org/rec/journals/bioinformatics/DeaneKB01URL#6319243Chris H. Q. DingInna DubchakMulti-class protein fold recognition using support vector machines and neural networks.Bioinform.174349-3582001Journal Articlesclosedjournals/bioinformatics/DingD0110.1093/BIOINFORMATICS/17.4.349https://doi.org/10.1093/bioinformatics/17.4.349https://dblp.org/rec/journals/bioinformatics/DingD01URL#6319244Zsuzsanna DosztányiAndrew E. TordaAmino acid similarity matrices based on force fields.Bioinform.178686-6992001Journal Articlesclosedjournals/bioinformatics/DosztanyiT0110.1093/BIOINFORMATICS/17.8.686https://doi.org/10.1093/bioinformatics/17.8.686https://dblp.org/rec/journals/bioinformatics/DosztanyiT01URL#6319245Dominique DouguetGilles LabesseEasier threading through web-based comparisons and cross-validations.Bioinform.178752-7532001Journal Articlesclosedjournals/bioinformatics/DouguetL0110.1093/BIOINFORMATICS/17.8.752https://doi.org/10.1093/bioinformatics/17.8.752https://dblp.org/rec/journals/bioinformatics/DouguetL01URL#6319246Alexei J. DrummondKorbinian StrimmerPAL: an object-oriented programming library for molecular evolution and phylogenetics.Bioinform.177662-6632001Journal Articlesclosedjournals/bioinformatics/DrummondS0110.1093/BIOINFORMATICS/17.7.662https://doi.org/10.1093/bioinformatics/17.7.662https://dblp.org/rec/journals/bioinformatics/DrummondS01URL#6319247B. DysvikInge JonassenJ-Express: exploring gene expression data using Java.Bioinform.174369-3702001Journal Articlesclosedjournals/bioinformatics/DysvikJ0110.1093/BIOINFORMATICS/17.4.369https://doi.org/10.1093/bioinformatics/17.4.369https://dblp.org/rec/journals/bioinformatics/DysvikJ01URL#6319248Barbara A. EckmanAnthony KoskyLeonardo A. Laroco Jr.Extending traditional query-based integration approaches for functional characterization of post-genomic data.Bioinform.177587-6012001Journal Articlesclosedjournals/bioinformatics/EckmanKL0110.1093/BIOINFORMATICS/17.7.587https://doi.org/10.1093/bioinformatics/17.7.587https://dblp.org/rec/journals/bioinformatics/EckmanKL01URL#6319249Anton J. EnrightChristos A. OuzounisBioLayout-an automatic graph layout algorithm for similarity visualization.Bioinform.179853-8542001Journal Articlesclosedjournals/bioinformatics/EnrightO0110.1093/BIOINFORMATICS/17.9.853https://doi.org/10.1093/bioinformatics/17.9.853https://dblp.org/rec/journals/bioinformatics/EnrightO01URL#6319250Rob M. EwingJ. Michael CherryVisualization of expression clusters using Sammon's non-linear mapping.Bioinform.177658-6592001Journal Articlesclosedjournals/bioinformatics/EwingC0110.1093/BIOINFORMATICS/17.7.658https://doi.org/10.1093/bioinformatics/17.7.658https://dblp.org/rec/journals/bioinformatics/EwingC01URL#6319251Eran EyalRafael NajmanovichVladimir SobolevMarvin EdelmanMutaProt: a web interface for structural analysis of point mutations.Bioinform.174381-3822001Journal Articlesclosedjournals/bioinformatics/EyalNSE0110.1093/BIOINFORMATICS/17.4.381https://doi.org/10.1093/bioinformatics/17.4.381https://dblp.org/rec/journals/bioinformatics/EyalNSE01URL#6319252Volker A. EyrichMarc A. Martí-RenomDariusz PrzybylskiMallur S. MadhusudhanAndrás FiserFlorencio PazosAlfonso ValenciaAndrej SaliBurkhard RostEVA: continuous automatic evaluation of protein structure prediction servers.Bioinform.17121242-12432001Journal Articlesclosedjournals/bioinformatics/EyrichMPMFPVSR0110.1093/BIOINFORMATICS/17.12.1242https://doi.org/10.1093/bioinformatics/17.12.1242https://dblp.org/rec/journals/bioinformatics/EyrichMPMFPVSR01URL#6319253Rosel Kretschmer-Kazemi FarWolfgang NedbalGeorg SczakielConcepts to automate the theoretical design of effective antisense oligonucleotides.Bioinform.17111058-10612001Journal Articlesclosedjournals/bioinformatics/FarNS0110.1093/BIOINFORMATICS/17.11.1058https://doi.org/10.1093/bioinformatics/17.11.1058https://dblp.org/rec/journals/bioinformatics/FarNS01URL#6319254Piero FariselliRita CasadioPrediction of disulfide connectivity in proteins.Bioinform.1710957-9642001Journal Articlesclosedjournals/bioinformatics/FariselliC0110.1093/BIOINFORMATICS/17.10.957https://doi.org/10.1093/bioinformatics/17.10.957https://dblp.org/rec/journals/bioinformatics/FariselliC01URL#6319255Piero FariselliRita CasadioRCNPRED: prediction of the residue co-ordination numbers in proteins.Bioinform.171202-2042001Journal Articlesclosedjournals/bioinformatics/FariselliC01a10.1093/BIOINFORMATICS/17.2.202https://doi.org/10.1093/bioinformatics/17.2.202https://dblp.org/rec/journals/bioinformatics/FariselliC01aURL#6319256Dmitrij FrishmanKaj AlbermannJean HaniKlaus HeumannAgnes MetanomskiAlfred ZollnerHans-Werner MewesFunctional and structural genomics using PEDANT.Bioinform.17144-572001Journal Articlesclosedjournals/bioinformatics/FrishmanAHHMZM0110.1093/BIOINFORMATICS/17.1.44https://doi.org/10.1093/bioinformatics/17.1.44https://dblp.org/rec/journals/bioinformatics/FrishmanAHHMZM01URL#6319257Martin C. FrithUlla HansenZhiping WengDetection of cis -element clusters in higher eukaryotic DNA.Bioinform.1710878-8892001Journal Articlesclosedjournals/bioinformatics/FrithHW0110.1093/BIOINFORMATICS/17.10.878https://doi.org/10.1093/bioinformatics/17.10.878https://dblp.org/rec/journals/bioinformatics/FrithHW01URL#6319258Georg FuellenJohann-Wolfgang WägeleRobert GiegerichMinimum conflict: a divide-and-conquer approach to phylogeny estimation.Bioinform.17121168-11782001Journal Articlesclosedjournals/bioinformatics/FuellenWG0110.1093/BIOINFORMATICS/17.12.1168https://doi.org/10.1093/bioinformatics/17.12.1168https://dblp.org/rec/journals/bioinformatics/FuellenWG01URL#6319259Ken-ichiro FukudaToshihisa TakagiKnowledge representation of signal transduction pathways.Bioinform.179829-8372001Journal Articlesclosedjournals/bioinformatics/FukudaT0110.1093/BIOINFORMATICS/17.9.829https://doi.org/10.1093/bioinformatics/17.9.829https://dblp.org/rec/journals/bioinformatics/FukudaT01URL#6319260Robert GarianPrediction of quaternary structure from primary structure.Bioinform.176551-5562001Journal Articlesclosedjournals/bioinformatics/Garian0110.1093/BIOINFORMATICS/17.6.551https://doi.org/10.1093/bioinformatics/17.6.551https://dblp.org/rec/journals/bioinformatics/Garian01URL#6319261Brian GaschenCarla KuikenBette T. KorberBrian T. FoleyRetrieval and on-the-fly alignment of sequence fragments from the HIV database.Bioinform.175415-4182001Journal Articlesclosedjournals/bioinformatics/GaschenKKF0110.1093/BIOINFORMATICS/17.5.415https://doi.org/10.1093/bioinformatics/17.5.415https://dblp.org/rec/journals/bioinformatics/GaschenKKF01URL#6319262Birgitta GeierGabi KastenmüllerMatthias FellenbergHans-Werner MewesBurkhard MorgensternThe HIB database of annotated UniGene clusters.Bioinform.176571-5722001Journal Articlesclosedjournals/bioinformatics/GeierKFMM0110.1093/BIOINFORMATICS/17.6.571https://doi.org/10.1093/bioinformatics/17.6.571https://dblp.org/rec/journals/bioinformatics/GeierKFMM01URL#6319263Christoph GilleCornelius FrömmelSTRAP: editor for STRuctural Alignments of Proteins.Bioinform.174377-3782001Journal Articlesclosedjournals/bioinformatics/GilleF0110.1093/BIOINFORMATICS/17.4.377https://doi.org/10.1093/bioinformatics/17.4.377https://dblp.org/rec/journals/bioinformatics/GilleF01URL#6319264Leo GoodstadtChris P. PontingCHROMA: consensus-based colouring of multiple alignments for publication.Bioinform.179845-8462001Journal Articlesclosedjournals/bioinformatics/GoodstadtP0110.1093/BIOINFORMATICS/17.9.845https://doi.org/10.1093/bioinformatics/17.9.845https://dblp.org/rec/journals/bioinformatics/GoodstadtP01URL#6319265Jan GorodkinChristian ZwiebBjarne KnudsenSemi-automated update and cleanup of structural RNA alignment databases.Bioinform.177642-6452001Journal Articlesclosedjournals/bioinformatics/GorodkinZK0110.1093/BIOINFORMATICS/17.7.642https://doi.org/10.1093/bioinformatics/17.7.642https://dblp.org/rec/journals/bioinformatics/GorodkinZK01URL#6319266David HallSuchendra M. BhandarkarJonathan P. ArnoldTongzhang JiangPhysical mapping with automatic capture of hybridization data.Bioinform.173205-2132001Journal Articlesclosedjournals/bioinformatics/HallBAJ0110.1093/BIOINFORMATICS/17.3.205https://doi.org/10.1093/bioinformatics/17.3.205https://dblp.org/rec/journals/bioinformatics/HallBAJ01URL#6319267Jochen HampeAndreas WollsteinTimothy LuHans-Jürgen FrevelMarcus WillCarl ManasterStefan SchreiberAn integrated system for high throughput TaqManTM based SNP genotyping.Bioinform.177654-6552001Journal Articlesclosedjournals/bioinformatics/HampeWLFWMS0110.1093/BIOINFORMATICS/17.7.654https://doi.org/10.1093/bioinformatics/17.7.654https://dblp.org/rec/journals/bioinformatics/HampeWLFWMS01URL#6319268Eric HarleyAnthony J. BonnerNathan GoodmanUniform integration of genome mapping data using intersection graphs.Bioinform.176487-4942001Journal Articlesclosedjournals/bioinformatics/HarleyBG0110.1093/BIOINFORMATICS/17.6.487https://doi.org/10.1093/bioinformatics/17.6.487https://dblp.org/rec/journals/bioinformatics/HarleyBG01URL#6319269Artemis G. HatzigeorgiouPetko FizievMartin ReczkoDIANA-EST: a statistical analysis.Bioinform.1710913-9192001Journal Articlesclosedjournals/bioinformatics/HatzigeorgiouFR0110.1093/BIOINFORMATICS/17.10.913https://doi.org/10.1093/bioinformatics/17.10.913https://dblp.org/rec/journals/bioinformatics/HatzigeorgiouFR01URL#6319270Yang HeXiangming XuKenneth R. TobuttMartin S. RidoutPolylink: to support two-point linkage analysis in autotetraploids.Bioinform.178740-7412001Journal Articlesclosedjournals/bioinformatics/HeXTR0110.1093/BIOINFORMATICS/17.8.740https://doi.org/10.1093/bioinformatics/17.8.740https://dblp.org/rec/journals/bioinformatics/HeXTR01URL#6319271Andreas HegerLiisa HolmPicasso: generating a covering set of protein family profiles.Bioinform.173272-2792001Journal Articlesclosedjournals/bioinformatics/HegerH0110.1093/BIOINFORMATICS/17.3.272https://doi.org/10.1093/bioinformatics/17.3.272https://dblp.org/rec/journals/bioinformatics/HegerH01URL#6319272Christoph HelmaRoss D. KingStefan Kramer 0001Ashwin Srinivasan 0001The Predictive Toxicology Challenge 2000-2001.Bioinform.171107-1082001Journal Articlesclosedjournals/bioinformatics/HelmaKKS0110.1093/BIOINFORMATICS/17.1.107https://doi.org/10.1093/bioinformatics/17.1.107https://dblp.org/rec/journals/bioinformatics/HelmaKKS01URL#6319273Javier HerreroAlfonso ValenciaJoaquín DopazoA hierarchical unsupervised growing neural network for clustering gene expression patterns.Bioinform.171126-1362001Journal Articlesclosedjournals/bioinformatics/HerreroVD0110.1093/BIOINFORMATICS/17.2.126https://doi.org/10.1093/bioinformatics/17.2.126https://dblp.org/rec/journals/bioinformatics/HerreroVD01URL#6319274Win HideExScript: An 'EX'-Centric Approach to the Description of Transcript Diversity.Bioinform.176485-4862001Journal Articlesclosedjournals/bioinformatics/Hide0110.1093/BIOINFORMATICS/17.6.485https://doi.org/10.1093/bioinformatics/17.6.485https://dblp.org/rec/journals/bioinformatics/Hide01URL#6319275Mark HoebekeHélène ChiapelloPhilippe NoirotPhilippe BessièresSPiD: a subtilis protein interaction database.Bioinform.17121209-12122001Journal Articlesclosedjournals/bioinformatics/HoebekeCNB0110.1093/BIOINFORMATICS/17.12.1209https://doi.org/10.1093/bioinformatics/17.12.1209https://dblp.org/rec/journals/bioinformatics/HoebekeCNB01URL#6319276Ian HolmesWilliam J. BrunoEvolutionary HMMs: a Bayesian approach to multiple alignment.Bioinform.179803-8202001Journal Articlesclosedjournals/bioinformatics/HolmesB0110.1093/BIOINFORMATICS/17.9.803https://doi.org/10.1093/bioinformatics/17.9.803https://dblp.org/rec/journals/bioinformatics/HolmesB01URL#6319277Katsuhisa HorimotoSatoshi FukuchiKentaro MoriComprehensive comparison between locations of orthologous genes on archaeal and bacterial genomes.Bioinform.179791-8022001Journal Articlesclosedjournals/bioinformatics/HorimotoFM0110.1093/BIOINFORMATICS/17.9.791https://doi.org/10.1093/bioinformatics/17.9.791https://dblp.org/rec/journals/bioinformatics/HorimotoFM01URL#6319278Katsuhisa HorimotoHiroyuki TohStatistical estimation of cluster boundaries in gene expression profile data.Bioinform.17121143-11512001Journal Articlesclosedjournals/bioinformatics/HorimotoT0110.1093/BIOINFORMATICS/17.12.1143https://doi.org/10.1093/bioinformatics/17.12.1143https://dblp.org/rec/journals/bioinformatics/HorimotoT01URL#6319279Sujun HuaZhirong SunSupport vector machine approach for protein subcellular localization prediction.Bioinform.178721-7282001Journal Articlesclosedjournals/bioinformatics/HuaS0110.1093/BIOINFORMATICS/17.8.721https://doi.org/10.1093/bioinformatics/17.8.721https://dblp.org/rec/journals/bioinformatics/HuaS01URL#6319280John P. HuelsenbeckFredrik RonquistMRBAYES: Bayesian inference of phylogenetic trees.Bioinform.178754-7552001Journal Articlesclosedjournals/bioinformatics/HuelsenbeckR0110.1093/BIOINFORMATICS/17.8.754https://doi.org/10.1093/bioinformatics/17.8.754https://dblp.org/rec/journals/bioinformatics/HuelsenbeckR01URL#6319281Hubert HugRainer SchulerStrategies for the development of a peptide computer.Bioinform.174364-3682001Journal Articlesclosedjournals/bioinformatics/HugS0110.1093/BIOINFORMATICS/17.4.364https://doi.org/10.1093/bioinformatics/17.4.364https://dblp.org/rec/journals/bioinformatics/HugS01URL#6319282Kazuhisa IchikawaA-Cell: graphical user interface for the construction of biochemical reaction models.Bioinform.175483-4842001Journal Articlesclosedjournals/bioinformatics/Ichikawa0110.1093/BIOINFORMATICS/17.5.483https://doi.org/10.1093/bioinformatics/17.5.483https://dblp.org/rec/journals/bioinformatics/Ichikawa01URL#6319283Ingrid B. JakobsenJennifer A. SaleebaMichael PoidingerTimothy G. LittlejohnTreeGeneBrowser: phylogenetic data mining of gene sequences from public databases.Bioinform.176535-5402001Journal Articlesclosedjournals/bioinformatics/JakobsenSPL0110.1093/BIOINFORMATICS/17.6.535https://doi.org/10.1093/bioinformatics/17.6.535https://dblp.org/rec/journals/bioinformatics/JakobsenSPL01URL#6319284Neema JamshidiJeremy S. EdwardsTom FahlandGeorge M. ChurchBernhard O. PalssonDynamic simulation of the human red blood cell metabolic network.Bioinform.173286-2872001Journal Articlesclosedjournals/bioinformatics/JamshidiEFCP0110.1093/BIOINFORMATICS/17.3.286https://doi.org/10.1093/bioinformatics/17.3.286https://dblp.org/rec/journals/bioinformatics/JamshidiEFCP01URL#6319285Kimberly F. JohnsonSimon M. LinCritical Assessment of Microarray Data Analysis: the 2001 challenge.Bioinform.179857-8582001Journal Articlesclosedjournals/bioinformatics/JohnsonL0110.1093/BIOINFORMATICS/17.9.857https://doi.org/10.1093/bioinformatics/17.9.857https://dblp.org/rec/journals/bioinformatics/JohnsonL01URL#6319286Keith A. JolleyE. J. FeilMan-Suen ChanMartin C. J. MaidenSequence type analysis and recombinational tests (START).Bioinform.17121230-12312001Journal Articlesclosedjournals/bioinformatics/JolleyFCM0110.1093/BIOINFORMATICS/17.12.1230https://doi.org/10.1093/bioinformatics/17.12.1230https://dblp.org/rec/journals/bioinformatics/JolleyFCM01URL#6319287I King JordanG. Reid BishopDaniel S. GonzalezSequence and structural aspects of functional diversification in class I-mannosidase evolution.Bioinform.1710965-9762001Journal Articlesclosedjournals/bioinformatics/JordanBG0110.1093/BIOINFORMATICS/17.10.965https://doi.org/10.1093/bioinformatics/17.10.965https://dblp.org/rec/journals/bioinformatics/JordanBG01URL#6319288Thomas JunierMarco PagniPhilipp Buchermmsearch: a motif arrangement language and search program.Bioinform.17121234-12352001Journal Articlesclosedjournals/bioinformatics/JunierPB0110.1093/BIOINFORMATICS/17.12.1234https://doi.org/10.1093/bioinformatics/17.12.1234https://dblp.org/rec/journals/bioinformatics/JunierPB01URL#6319289Thomas KämpkeMarkus KieningerMichael MecklenburgEfficient primer design algorithms.Bioinform.173214-2252001Journal Articlesclosedjournals/bioinformatics/KampkeKM0110.1093/BIOINFORMATICS/17.3.214https://doi.org/10.1093/bioinformatics/17.3.214https://dblp.org/rec/journals/bioinformatics/KampkeKM01URL#6319290Peter D. KarpSuzanne M. PaleyJingchun ZhuDatabase verification studies of SWISS-PROT and GenBank.Bioinform.176526-5322001Journal Articlesclosedjournals/bioinformatics/KarpPZ0110.1093/BIOINFORMATICS/17.6.526https://doi.org/10.1093/bioinformatics/17.6.526https://dblp.org/rec/journals/bioinformatics/KarpPZ01URL#6319291Kevin KarplusBirong HuEvaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set.Bioinform.178713-7202001Journal Articlesclosedjournals/bioinformatics/KarplusH0110.1093/BIOINFORMATICS/17.8.713https://doi.org/10.1093/bioinformatics/17.8.713https://dblp.org/rec/journals/bioinformatics/KarplusH01URL#6319292Xiayi KeAndrew Collins 0001Shu YePIRA PCR designer for restriction analysis of single nucleotide polymorphisms.Bioinform.179838-8392001Journal Articlesclosedjournals/bioinformatics/KeCY0110.1093/BIOINFORMATICS/17.9.838https://doi.org/10.1093/bioinformatics/17.9.838https://dblp.org/rec/journals/bioinformatics/KeCY01URL#6319293Xiayi KeWilliam TapperAndrew Collins 0001LDB2000: sequence-based integrated maps of the human genome.Bioinform.177581-5862001Journal Articlesclosedjournals/bioinformatics/KeTC0110.1093/BIOINFORMATICS/17.7.581https://doi.org/10.1093/bioinformatics/17.7.581https://dblp.org/rec/journals/bioinformatics/KeTC01URL#6319294Szymon M. KielbasaJan O. KorbelDieter BeuleJohannes SchuchhardtHanspeter HerzelCombining frequency and positional information to predict transcription factor binding sites.Bioinform.17111019-10262001Journal Articlesclosedjournals/bioinformatics/KielbasaKBSH0110.1093/BIOINFORMATICS/17.11.1019https://doi.org/10.1093/bioinformatics/17.11.1019https://dblp.org/rec/journals/bioinformatics/KielbasaKBSH01URL#6319295Ross D. KingAndreas KarwathAmanda ClareLuc DehaspeThe utility of different representations of protein sequence for predicting functional class.Bioinform.175445-4542001Journal Articlesclosedjournals/bioinformatics/KingKCD0110.1093/BIOINFORMATICS/17.5.445https://doi.org/10.1093/bioinformatics/17.5.445https://dblp.org/rec/journals/bioinformatics/KingKCD01URL#6319296Nikolay A. KolchanovCharlie HodgmanThe 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000.Bioinform.17119972001Journal Articlesclosedjournals/bioinformatics/KolchanovH0110.1093/BIOINFORMATICS/17.11.997https://doi.org/10.1093/bioinformatics/17.11.997https://dblp.org/rec/journals/bioinformatics/KolchanovH01URL#6319297Frank KoseWolfram WeckwerthThomas LinkeOliver FiehnVisualizing plant metabolomic correlation networks using clique-metabolite matrices.Bioinform.17121198-12082001Journal Articlesclosedjournals/bioinformatics/KoseWLF0110.1093/BIOINFORMATICS/17.12.1198https://doi.org/10.1093/bioinformatics/17.12.1198https://dblp.org/rec/journals/bioinformatics/KoseWLF01URL#6319298Jeanne KowalskiA non-parametric approach to translating gene region heterogeneity associated with phenotype into location heterogeneity.Bioinform.179775-7902001Journal Articlesclosedjournals/bioinformatics/Kowalski0110.1093/BIOINFORMATICS/17.9.775https://doi.org/10.1093/bioinformatics/17.9.775https://dblp.org/rec/journals/bioinformatics/Kowalski01URL#6319299Eileen T. KraemerJian WangJinhua GuoSamuel HopkinsJonathan P. ArnoldAn analysis of gene-finding programs for Neurospora crassa.Bioinform.1710901-9122001Journal Articlesclosedjournals/bioinformatics/KraemerWGHA0110.1093/BIOINFORMATICS/17.10.901https://doi.org/10.1093/bioinformatics/17.10.901https://dblp.org/rec/journals/bioinformatics/KraemerWGHA01URL#6319300Ernst KretschmannWolfgang FleischmannRolf ApweilerAutomatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT.Bioinform.1710920-9262001Journal Articlesclosedjournals/bioinformatics/KretschmannFA0110.1093/BIOINFORMATICS/17.10.920https://doi.org/10.1093/bioinformatics/17.10.920https://dblp.org/rec/journals/bioinformatics/KretschmannFA01URL#6319301Sudhir Kumar 0001Koichiro TamuraIngrid B. JakobsenMasatoshi NeiMEGA2: molecular evolutionary genetics analysis software.Bioinform.17121244-12452001Journal Articlesclosedjournals/bioinformatics/KumarTJN0110.1093/BIOINFORMATICS/17.12.1244https://doi.org/10.1093/bioinformatics/17.12.1244https://dblp.org/rec/journals/bioinformatics/KumarTJN01URL#6319302Salvatore LanzavecchiaFrancesca CantelePier Luigi BellonAlignment of 3D structures of macromolecular assemblies.Bioinform.17158-622001Journal Articlesclosedjournals/bioinformatics/LanzavecchiaCB0110.1093/BIOINFORMATICS/17.1.58https://doi.org/10.1093/bioinformatics/17.1.58https://dblp.org/rec/journals/bioinformatics/LanzavecchiaCB01URL#6319303J. L. LessemStacey S. ChernyDeFries-Fulker multiple regression analysis of sibship QTL data: a SAS®macro.Bioinform.174371-3722001Journal Articlesclosedjournals/bioinformatics/LessemC0110.1093/BIOINFORMATICS/17.4.371https://doi.org/10.1093/bioinformatics/17.4.371https://dblp.org/rec/journals/bioinformatics/LessemC01URL#6319304Catherine LetondalA Web interface generator for molecular biology programs in Unix.Bioinform.17173-822001Journal Articlesclosedjournals/bioinformatics/Letondal0110.1093/BIOINFORMATICS/17.1.73https://doi.org/10.1093/bioinformatics/17.1.73https://dblp.org/rec/journals/bioinformatics/Letondal01URL#6319305Siu-wai LeungChris MellishDave Robertson 0001Basic Gene Grammars and DNA-ChartParser for language processing of Escherichia coli promoter DNA sequences.Bioinform.173226-2362001Journal Articlesclosedjournals/bioinformatics/LeungMR0110.1093/BIOINFORMATICS/17.3.226https://doi.org/10.1093/bioinformatics/17.3.226https://dblp.org/rec/journals/bioinformatics/LeungMR01URL#6319306Victor G. LevitskyOlga A. PodkolodnayaNikolay A. KolchanovNikolay L. PodkolodnyNucleosome formation potential of eukaryotic DNA: calculation and promoters analysis.Bioinform.1711998-10102001Journal Articlesclosedjournals/bioinformatics/LevitskyPKP0110.1093/BIOINFORMATICS/17.11.998https://doi.org/10.1093/bioinformatics/17.11.998https://dblp.org/rec/journals/bioinformatics/LevitskyPKP01URL#6319307Victor G. LevitskyOlga A. PodkolodnayaNikolay A. KolchanovNikolay L. PodkolodnyNucleosome formation potential of exons, introns, and Alu repeats.Bioinform.17111062-10642001Journal Articlesclosedjournals/bioinformatics/LevitskyPKP01a10.1093/BIOINFORMATICS/17.11.1062https://doi.org/10.1093/bioinformatics/17.11.1062https://dblp.org/rec/journals/bioinformatics/LevitskyPKP01aURL#6319308Samuel LevySridhar HannenhalliChristopher T. WorkmanEnrichment of regulatory signals in conserved non-coding genomic sequence.Bioinform.1710871-8772001Journal Articlesclosedjournals/bioinformatics/LevyHW0110.1093/BIOINFORMATICS/17.10.871https://doi.org/10.1093/bioinformatics/17.10.871https://dblp.org/rec/journals/bioinformatics/LevyHW01URL#6319309Matej LexaJ. HorakBretislav BrzobohatyVirtual PCR.Bioinform.171192-1932001Journal Articlesclosedjournals/bioinformatics/LexaHB0110.1093/BIOINFORMATICS/17.2.192https://doi.org/10.1093/bioinformatics/17.2.192https://dblp.org/rec/journals/bioinformatics/LexaHB01URL#6319310Ming Li 0001Jonathan H. BadgerXin ChenSam KwongPaul E. KearneyHaoyong ZhangAn information-based sequence distance and its application to whole mitochondrial genome phylogeny.Bioinform.171149-1542001Journal Articlesclosedjournals/bioinformatics/LiBCKKZ0110.1093/BIOINFORMATICS/17.2.149https://doi.org/10.1093/bioinformatics/17.2.149https://dblp.org/rec/journals/bioinformatics/LiBCKKZ01URL#6319311Weizhong Li 0002Lukasz JaroszewskiAdam GodzikClustering of highly homologous sequences to reduce the size of large protein databases.Bioinform.173282-2832001Journal Articlesclosedjournals/bioinformatics/LiJG0110.1093/BIOINFORMATICS/17.3.282https://doi.org/10.1093/bioinformatics/17.3.282https://dblp.org/rec/journals/bioinformatics/LiJG01URL#6319312Fugen LiGary D. StormoSelection of optimal DNA oligos for gene expression arrays.Bioinform.17111067-10762001Journal Articlesclosedjournals/bioinformatics/LiS0110.1093/BIOINFORMATICS/17.11.1067https://doi.org/10.1093/bioinformatics/17.11.1067https://dblp.org/rec/journals/bioinformatics/LiS01URL#6319313Leping LiClarice R. WeinbergThomas A. DardenLee G. PedersenGene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method.Bioinform.17121131-11422001Journal Articlesclosedjournals/bioinformatics/LiWDP0110.1093/BIOINFORMATICS/17.12.1131https://doi.org/10.1093/bioinformatics/17.12.1131https://dblp.org/rec/journals/bioinformatics/LiWDP01URL#6319314Rongxiang LiuThomas W. BlackwellDavid J. StatesConformational model for binding site recognition by the E.coli MetJ transcription factor.Bioinform.177622-6332001Journal Articlesclosedjournals/bioinformatics/LiuBS0110.1093/BIOINFORMATICS/17.7.622https://doi.org/10.1093/bioinformatics/17.7.622https://dblp.org/rec/journals/bioinformatics/LiuBS01URL#6319315Ari LöytynojaMichel C. MilinkovitchSOAP, cleaning multiple alignments from unstable blocks.Bioinform.176573-5742001Journal Articlesclosedjournals/bioinformatics/LoytynojaM0110.1093/BIOINFORMATICS/17.6.573https://doi.org/10.1093/bioinformatics/17.6.573https://dblp.org/rec/journals/bioinformatics/LoytynojaM01URL#6319316Alexander V. LukashinRainer FuchsAnalysis of temporal gene expression profiles: clustering by simulated annealing and determining the optimal number of clusters.Bioinform.175405-4142001Journal Articlesclosedjournals/bioinformatics/LukashinF0110.1093/BIOINFORMATICS/17.5.405https://doi.org/10.1093/bioinformatics/17.5.405https://dblp.org/rec/journals/bioinformatics/LukashinF01URL#6319317Izabela MakalowskaJoseph F. Ryan 0003Andreas D. BaxevanisGeneMachine: gene prediction and sequence annotation.Bioinform.179843-8442001Journal Articlesclosedjournals/bioinformatics/MakalowskaRB0110.1093/BIOINFORMATICS/17.9.843https://doi.org/10.1093/bioinformatics/17.9.843https://dblp.org/rec/journals/bioinformatics/MakalowskaRB01URL#6319318Vladimir MakarenkovT-REX: reconstructing and visualizing phylogenetic trees and reticulation networks.Bioinform.177664-6682001Journal Articlesclosedjournals/bioinformatics/Makarenkov0110.1093/BIOINFORMATICS/17.7.664https://doi.org/10.1093/bioinformatics/17.7.664https://dblp.org/rec/journals/bioinformatics/Makarenkov01URL#6319319R. R. MalliosPredicting class II MHC/peptide multi-level binding with an iterative stepwise discriminant analysis meta-algorithm.Bioinform.1710942-9482001Journal Articlesclosedjournals/bioinformatics/Mallios0110.1093/BIOINFORMATICS/17.10.942https://doi.org/10.1093/bioinformatics/17.10.942https://dblp.org/rec/journals/bioinformatics/Mallios01URL#6319320Edward M. MarcotteIoannis XenariosDavid S. EisenbergMining literature for protein-protein interactions.Bioinform.174359-3632001Journal Articlesclosedjournals/bioinformatics/MarcotteXE0110.1093/BIOINFORMATICS/17.4.359https://doi.org/10.1093/bioinformatics/17.4.359https://dblp.org/rec/journals/bioinformatics/MarcotteXE01URL#6319321Marc A. Martí-RenomValentin A. IlyinAndrej SaliDBAli: a database of protein structure alignments.Bioinform.178746-7472001Journal Articlesclosedjournals/bioinformatics/Marti-RenomIS0110.1093/BIOINFORMATICS/17.8.746https://doi.org/10.1093/bioinformatics/17.8.746https://dblp.org/rec/journals/bioinformatics/Marti-RenomIS01URL#6319322Daniel R. MasysJohn B. WelshJ. Lynn FinkMichael GribskovIgor KlacanskyJacques CorbeilUse of keyword hierarchies to interpret gene expression patterns.Bioinform.174319-3262001Journal Articlesclosedjournals/bioinformatics/MasysWFGKC0110.1093/BIOINFORMATICS/17.4.319https://doi.org/10.1093/bioinformatics/17.4.319https://dblp.org/rec/journals/bioinformatics/MasysWFGKC01URL#6319323Raja MazumderAshok S. KolaskarDonald SetoGeneOrder: comparing the order of genes in small genomes.Bioinform.171162-1662001Journal Articlesclosedjournals/bioinformatics/MazumderKS0110.1093/BIOINFORMATICS/17.2.162https://doi.org/10.1093/bioinformatics/17.2.162https://dblp.org/rec/journals/bioinformatics/MazumderKS01URL#6319324Liam J. McGuffinKevin BrysonDavid T. JonesWhat are the baselines for protein fold recognition?Bioinform.17163-722001Journal Articlesclosedjournals/bioinformatics/McGuffinBJ0110.1093/BIOINFORMATICS/17.1.63https://doi.org/10.1093/bioinformatics/17.1.63https://dblp.org/rec/journals/bioinformatics/McGuffinBJ01URL#6319325Gráinne McGuireMichael C. DenhamDavid J. BaldingMAC5: Bayesian inference of phylogenetic trees from DNA sequences incorporating gaps.Bioinform.175479-4802001Journal Articlesclosedjournals/bioinformatics/McGuireDB0110.1093/BIOINFORMATICS/17.5.479https://doi.org/10.1093/bioinformatics/17.5.479https://dblp.org/rec/journals/bioinformatics/McGuireDB01URL#6319326Pedro Mendes 0001Douglas B. KellMEG (Model Extender for Gepasi): a program for the modelling of complex, heterogeneous, cellular systems.Bioinform.173288-2892001Journal Articlesclosedjournals/bioinformatics/MendesK0110.1093/BIOINFORMATICS/17.3.288https://doi.org/10.1093/bioinformatics/17.3.288https://dblp.org/rec/journals/bioinformatics/MendesK01URL#6319327Kevin P. MicallefMark CooperDean W. PodlichUsing clusters of computers for large QU-GENE simulation experiments.Bioinform.171194-1952001Journal Articlesclosedjournals/bioinformatics/MicallefCP0110.1093/BIOINFORMATICS/17.2.194https://doi.org/10.1093/bioinformatics/17.2.194https://dblp.org/rec/journals/bioinformatics/MicallefCP01URL#6319328Eugenia MigliavaccaAlexei A. AdzhubeiManuel C. PeitschMDB: a database system utilizing automatic construction of modules and STAR-derived universal language.Bioinform.17111047-10522001Journal Articlesclosedjournals/bioinformatics/MigliavaccaAP0110.1093/BIOINFORMATICS/17.11.1047https://doi.org/10.1093/bioinformatics/17.11.1047https://dblp.org/rec/journals/bioinformatics/MigliavaccaAP01URL#6319329Webb MillerComparison of genomic DNA sequences: solved and unsolved problems.Bioinform.175391-3972001Journal Articlesclosedjournals/bioinformatics/Miller0110.1093/BIOINFORMATICS/17.5.391https://doi.org/10.1093/bioinformatics/17.5.391https://dblp.org/rec/journals/bioinformatics/Miller01URL#6319330Andrey A. MironovPavel S. NovichkovMikhail S. GelfandPro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors.Bioinform.17113-152001Journal Articlesclosedjournals/bioinformatics/MironovNG0110.1093/BIOINFORMATICS/17.1.13https://doi.org/10.1093/bioinformatics/17.1.13https://dblp.org/rec/journals/bioinformatics/MironovNG01URL#6319331Hideaki MizunoYoshimasa TanakaKenta NakaiAkinori SaraiORI-GENE: gene classification based on the evolutionary tree.Bioinform.171167-1732001Journal Articlesclosedjournals/bioinformatics/MizunoTNS0110.1093/BIOINFORMATICS/17.2.167https://doi.org/10.1093/bioinformatics/17.2.167https://dblp.org/rec/journals/bioinformatics/MizunoTNS01URL#6319332Steffen MöllerMichael D. R. CroningRolf ApweilerEvaluation of methods for the prediction of membrane spanning regions.Bioinform.177646-6532001Journal Articlesclosedjournals/bioinformatics/MollerCA0110.1093/BIOINFORMATICS/17.7.646https://doi.org/10.1093/bioinformatics/17.7.646https://dblp.org/rec/journals/bioinformatics/MollerCA01URL#6319333Ralf MrowkaA Java applet for visualizing protein-protein interaction.Bioinform.177669-6712001Journal Articlesclosedjournals/bioinformatics/Mrowka0110.1093/BIOINFORMATICS/17.7.669https://doi.org/10.1093/bioinformatics/17.7.669https://dblp.org/rec/journals/bioinformatics/Mrowka01URL#6319334Ekaterina M. MyasnikovaAnastassia SamsonovaKonstantin KozlovMaria SamsonovaJohn ReinitzRegistration of the expression patterns of Drosophila segmentation genes by two independent methods.Bioinform.1713-122001Journal Articlesclosedjournals/bioinformatics/MyasnikovaSKSR0110.1093/BIOINFORMATICS/17.1.3https://doi.org/10.1093/bioinformatics/17.1.3https://dblp.org/rec/journals/bioinformatics/MyasnikovaSKSR01URL#6319335Hiromi NishidaEvolution of amino acid biosynthesis and enzymes with broad substrate specificity.Bioinform.17121224-12252001Journal Articlesclosedjournals/bioinformatics/Nishida0110.1093/BIOINFORMATICS/17.12.1224https://doi.org/10.1093/bioinformatics/17.12.1224https://dblp.org/rec/journals/bioinformatics/Nishida01URL#6319336Hiromi NishidaDistribution of genes for lysine biosynthesis through the aminoadipate pathway among prokaryotic genomes.Bioinform.171189-1912001Journal Articlesclosedjournals/bioinformatics/Nishida01a10.1093/BIOINFORMATICS/17.2.189https://doi.org/10.1093/bioinformatics/17.2.189https://dblp.org/rec/journals/bioinformatics/Nishida01aURL#6319337Cédric NotredameMocca: semi-automatic method for domain hunting.Bioinform.174373-3742001Journal Articlesclosedjournals/bioinformatics/Notredame0110.1093/BIOINFORMATICS/17.4.373https://doi.org/10.1093/bioinformatics/17.4.373https://dblp.org/rec/journals/bioinformatics/Notredame01URL#6319338Nicolas Le NovèreMELTING, computing the melting temperature of nucleic acid duplex.Bioinform.17121226-12272001Journal Articlesclosedjournals/bioinformatics/Novere0110.1093/BIOINFORMATICS/17.12.1226https://doi.org/10.1093/bioinformatics/17.12.1226https://dblp.org/rec/journals/bioinformatics/Novere01URL#6319339Nicolas Le NovèreThomas Simon ShimizuSTOCHSIM: modelling of stochastic biomolecular processes.Bioinform.176575-5762001Journal Articlesclosedjournals/bioinformatics/NovereS0110.1093/BIOINFORMATICS/17.6.575https://doi.org/10.1093/bioinformatics/17.6.575https://dblp.org/rec/journals/bioinformatics/NovereS01URL#6319340Pavel S. NovichkovMikhail S. GelfandAndrey A. MironovGene recognition in eukaryotic DNA by comparison of genomic sequences.Bioinform.17111011-10182001Journal Articlesclosedjournals/bioinformatics/NovichkovGM0110.1093/BIOINFORMATICS/17.11.1011https://doi.org/10.1093/bioinformatics/17.11.1011https://dblp.org/rec/journals/bioinformatics/NovichkovGM01URL#6319341Toshihide OnoHaretsugu HishigakiAkira TanigamiToshihisa TakagiAutomated extraction of information on protein-protein interactions from the biological literature.Bioinform.171155-1612001Journal Articlesclosedjournals/bioinformatics/OnoHTT0110.1093/BIOINFORMATICS/17.2.155https://doi.org/10.1093/bioinformatics/17.2.155https://dblp.org/rec/journals/bioinformatics/OnoHTT01URL#6319342William R. PearsonTraining for bioinformatics and computational biology.Bioinform.179761-7622001Journal Articlesclosedjournals/bioinformatics/Pearson0110.1093/BIOINFORMATICS/17.9.761https://doi.org/10.1093/bioinformatics/17.9.761https://dblp.org/rec/journals/bioinformatics/Pearson01URL#6319343Jimin PeiNick V. GrishinAL2CO: calculation of positional conservation in a protein sequence alignment.Bioinform.178700-7122001Journal Articlesclosedjournals/bioinformatics/PeiG0110.1093/BIOINFORMATICS/17.8.700https://doi.org/10.1093/bioinformatics/17.8.700https://dblp.org/rec/journals/bioinformatics/PeiG01URL#6319344Vinhthuy T. PhanSteven SkienaDealing with errors in interactive sequencing by hybridization.Bioinform.1710862-8702001Journal Articlesclosedjournals/bioinformatics/PhanS0110.1093/BIOINFORMATICS/17.10.862https://doi.org/10.1093/bioinformatics/17.10.862https://dblp.org/rec/journals/bioinformatics/PhanS01URL#6319345William R. PittMark A. WilliamsM. StevenB. SweeneyAlan J. BleasbyDavid S. MossThe Bioinformatics Template Library-generic components for biocomputing.Bioinform.178729-7372001Journal Articlesclosedjournals/bioinformatics/PittWSSBM0110.1093/BIOINFORMATICS/17.8.729https://doi.org/10.1093/bioinformatics/17.8.729https://dblp.org/rec/journals/bioinformatics/PittWSSBM01URL#6319346Raf M. PodowskiErik L. L. SonnhammerMEDUSA: large scale automatic selection and visual assessment of PCR primer pairs.Bioinform.177656-6572001Journal Articlesclosedjournals/bioinformatics/PodowskiS0110.1093/BIOINFORMATICS/17.7.656https://doi.org/10.1093/bioinformatics/17.7.656https://dblp.org/rec/journals/bioinformatics/PodowskiS01URL#6319347Ponraj PrabakaranJianghong AnM. Michael GromihaSamuel SelvarajHatsuho UedairaHidetoshi KonoAkinori SaraiThermodynamic database for protein-nucleic acid interactions (ProNIT).Bioinform.17111027-10342001Journal Articlesclosedjournals/bioinformatics/PrabakaranAGSUKS0110.1093/BIOINFORMATICS/17.11.1027https://doi.org/10.1093/bioinformatics/17.11.1027https://dblp.org/rec/journals/bioinformatics/PrabakaranAGSUKS01URL#6319348Dong QiA. Jamie CuticchiaCompositional symmetries in complete genomes.Bioinform.176557-5592001Journal Articlesclosedjournals/bioinformatics/QiC0110.1093/BIOINFORMATICS/17.6.557https://doi.org/10.1093/bioinformatics/17.6.557https://dblp.org/rec/journals/bioinformatics/QiC01URL#6319349Günter RaddatzMichaela DehioThomas F. MeyerChristoph DehioPrimeArray: genome-scale primer design for DNA-microarray construction.Bioinform.17198-992001Journal Articlesclosedjournals/bioinformatics/RaddatzDMD0110.1093/BIOINFORMATICS/17.1.98https://doi.org/10.1093/bioinformatics/17.1.98https://dblp.org/rec/journals/bioinformatics/RaddatzDMD01URL#6319350Vasily RamenskyVsevolod J. MakeevMikhail A. RoytbergVladimir G. TumanyanSegmentation of long genomic sequences into domains with homogeneous composition with BASIO software.Bioinform.17111065-10662001Journal Articlesclosedjournals/bioinformatics/RamenskyMRT0110.1093/BIOINFORMATICS/17.11.1065https://doi.org/10.1093/bioinformatics/17.11.1065https://dblp.org/rec/journals/bioinformatics/RamenskyMRT01URL#6319351Chenna RamuSIR: a simple indexing and retrieval system for biological flat file databases.Bioinform.178756-7582001Journal Articlesclosedjournals/bioinformatics/Ramu0110.1093/BIOINFORMATICS/17.8.756https://doi.org/10.1093/bioinformatics/17.8.756https://dblp.org/rec/journals/bioinformatics/Ramu01URL#6319352William C. RayCharles J. DanielsThe PACRAT system: an extensible WWW-based system for correlated sequence retrieval, storage and analysis.Bioinform.171100-1042001Journal Articlesclosedjournals/bioinformatics/RayD0110.1093/BIOINFORMATICS/17.1.100https://doi.org/10.1093/bioinformatics/17.1.100https://dblp.org/rec/journals/bioinformatics/RayD01URL#6319353William C. RayRobert S. Munson Jr.Charles J. DanielsTricross : using dot-plots in sequence-id space to detect uncataloged intergenic features.Bioinform.17121105-11122001Journal Articlesclosedjournals/bioinformatics/RayMD0110.1093/BIOINFORMATICS/17.12.1105https://doi.org/10.1093/bioinformatics/17.12.1105https://dblp.org/rec/journals/bioinformatics/RayMD01URL#6319354Pentti RiikonenJorma BobergTapio SalakoskiMauno VihinenBioWAP, mobile Internet service for bioinformatics.Bioinform.179855-8562001Journal Articlesclosedjournals/bioinformatics/RiikonenBSV0110.1093/BIOINFORMATICS/17.9.855https://doi.org/10.1093/bioinformatics/17.9.855https://dblp.org/rec/journals/bioinformatics/RiikonenBSV01URL#6319355Igor B. RogozinAlexey V. KochetovFyodor A. KondrashovEugene V. KooninLuciano MilanesiPresence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon.Bioinform.1710890-9002001Journal Articlesclosedjournals/bioinformatics/RogozinKKKM0110.1093/BIOINFORMATICS/17.10.890https://doi.org/10.1093/bioinformatics/17.10.890https://dblp.org/rec/journals/bioinformatics/RogozinKKKM01URL#6319356T. Andrew RonnebergStephen J. FreelandLaura F. LandweberGenview and Gencode: a pair of programs to test theories of genetic code evolution.Bioinform.173280-2812001Journal Articlesclosedjournals/bioinformatics/RonnebergFL0110.1093/BIOINFORMATICS/17.3.280https://doi.org/10.1093/bioinformatics/17.3.280https://dblp.org/rec/journals/bioinformatics/RonnebergFL01URL#6319357Leszek RychlewskiToolShop: prerelease inspections for protein structure prediction servers.Bioinform.17121240-12412001Journal Articlesclosedjournals/bioinformatics/Rychlewski0110.1093/BIOINFORMATICS/17.12.1240https://doi.org/10.1093/bioinformatics/17.12.1240https://dblp.org/rec/journals/bioinformatics/Rychlewski01URL#6319358Andrey RzhetskyShawn M. GomezBirth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.Bioinform.1710988-9962001Journal Articlesclosedjournals/bioinformatics/RzhetskyG0110.1093/BIOINFORMATICS/17.10.988https://doi.org/10.1093/bioinformatics/17.10.988https://dblp.org/rec/journals/bioinformatics/RzhetskyG01URL#6319359Meena K. SakharkarTin Wee TanSandro J. de SouzaGeneration of a database containing discordant intron positions in eukaryotic genes (MIDB).Bioinform.178671-6752001Journal Articlesclosedjournals/bioinformatics/SakharkarTS0110.1093/BIOINFORMATICS/17.8.671https://doi.org/10.1093/bioinformatics/17.8.671https://dblp.org/rec/journals/bioinformatics/SakharkarTS01URL#6319360John J. SalamaHoward J. FeldmanChristopher W. V. HogueVISTRAJ: exploring protein conformational space.Bioinform.179851-8522001Journal Articlesclosedjournals/bioinformatics/SalamaFH0110.1093/BIOINFORMATICS/17.9.851https://doi.org/10.1093/bioinformatics/17.9.851https://dblp.org/rec/journals/bioinformatics/SalamaFH01URL#6319361Chris SanderBioinformatics - Challenges in 2001.Bioinform.1711-22001Journal Articlesclosedjournals/bioinformatics/Sander0110.1093/BIOINFORMATICS/17.1.1https://doi.org/10.1093/bioinformatics/17.1.1https://dblp.org/rec/journals/bioinformatics/Sander01URL#6319362Frank SchachererClaudia ChoiUlrike GötzeMathias KrullSusanne PistorEdgar WingenderThe TRANSPATH signal transduction database: a knowledge base on signal transduction networks.Bioinform.17111053-10572001Journal Articlesclosedjournals/bioinformatics/SchachererCGKPW0110.1093/BIOINFORMATICS/17.11.1053https://doi.org/10.1093/bioinformatics/17.11.1053https://dblp.org/rec/journals/bioinformatics/SchachererCGKPW01URL#6319363David B. SearlsReading the book of life.Bioinform.177579-5802001Journal Articlesclosedjournals/bioinformatics/Searls0110.1093/BIOINFORMATICS/17.7.579https://doi.org/10.1093/bioinformatics/17.7.579https://dblp.org/rec/journals/bioinformatics/Searls01URL#6319364J. N. SelleyJ. SwiftTerri K. AttwoodEASY-an Expert Analysis SYstem for interpreting database search outputs.Bioinform.171105-1062001Journal Articlesclosedjournals/bioinformatics/SelleySA0110.1093/BIOINFORMATICS/17.1.105https://doi.org/10.1093/bioinformatics/17.1.105https://dblp.org/rec/journals/bioinformatics/SelleySA01URL#6319365Bruce A. ShapiroJin Chu WuDavid BengaliMark J. PottsThe massively parallel genetic algorithm for RNA folding: MIMD implementation and population variation.Bioinform.171137-1482001Journal Articlesclosedjournals/bioinformatics/ShapiroWBP0110.1093/BIOINFORMATICS/17.2.137https://doi.org/10.1093/bioinformatics/17.2.137https://dblp.org/rec/journals/bioinformatics/ShapiroWBP01URL#6319366Hidetoshi ShimodairaMasami HasegawaCONSEL: for assessing the confidence of phylogenetic tree selection.Bioinform.17121246-12472001Journal Articlesclosedjournals/bioinformatics/ShimodairaH0110.1093/BIOINFORMATICS/17.12.1246https://doi.org/10.1093/bioinformatics/17.12.1246https://dblp.org/rec/journals/bioinformatics/ShimodairaH01URL#6319367Elizabeth ShoopKevin A. T. SilversteinJames E. JohnsonErnest F. RetzelMetaFam: a unified classification of protein families. II. Schema and query capabilities.Bioinform.173262-2712001Journal Articlesclosedjournals/bioinformatics/ShoopSJR0110.1093/BIOINFORMATICS/17.3.262https://doi.org/10.1093/bioinformatics/17.3.262https://dblp.org/rec/journals/bioinformatics/ShoopSJR01URL#6319368Asim S. SiddiquiUwe DenglerGeoffrey J. Barton3Dee: a database of protein structural domains.Bioinform.171200-2012001Journal Articlesclosedjournals/bioinformatics/SiddiquiDB0110.1093/BIOINFORMATICS/17.2.200https://doi.org/10.1093/bioinformatics/17.2.200https://dblp.org/rec/journals/bioinformatics/SiddiquiDB01URL#6319369Adam C. SiepelAndrew D. FarmerAndrew N. TolopkoMingzhe ZhuangPedro Mendes 0001William D. BeavisBruno W. S. SobralISYS: a decentralized, component-based approach to the integration of heterogeneous bioinformatics resources.Bioinform.17183-942001Journal Articlesclosedjournals/bioinformatics/SiepelFTZMBS0110.1093/BIOINFORMATICS/17.1.83https://doi.org/10.1093/bioinformatics/17.1.83https://dblp.org/rec/journals/bioinformatics/SiepelFTZMBS01URL#6319370Kevin A. T. SilversteinElizabeth ShoopJames E. JohnsonErnest F. RetzelMetaFam: a unified classification of protein families. I. Overview and statistics.Bioinform.173249-2612001Journal Articlesclosedjournals/bioinformatics/SilversteinSJR0110.1093/BIOINFORMATICS/17.3.249https://doi.org/10.1093/bioinformatics/17.3.249https://dblp.org/rec/journals/bioinformatics/SilversteinSJR01URL#6319371Kim Lan SimTomoyuki UchidaSatoru MiyanoProDDO: a database of disordered proteins from the Protein Data Bank (PDB).Bioinform.174379-3802001Journal Articlesclosedjournals/bioinformatics/SimUM0110.1093/BIOINFORMATICS/17.4.379https://doi.org/10.1093/bioinformatics/17.4.379https://dblp.org/rec/journals/bioinformatics/SimUM01URL#6319372Harpreet SinghG. P. S. RaghavaProPred: prediction of HLA-DR binding sites.Bioinform.17121236-12372001Journal Articlesclosedjournals/bioinformatics/SinghR0110.1093/BIOINFORMATICS/17.12.1236https://doi.org/10.1093/bioinformatics/17.12.1236https://dblp.org/rec/journals/bioinformatics/SinghR01URL#6319373Rainer SpangMartin VingronLimits of homology detection by pairwise sequence comparison.Bioinform.174338-3422001Journal Articlesclosedjournals/bioinformatics/SpangV0110.1093/BIOINFORMATICS/17.4.338https://doi.org/10.1093/bioinformatics/17.4.338https://dblp.org/rec/journals/bioinformatics/SpangV01URL#6319374David J. StatesTime to defend what we have wonBioinform.1742992001Journal Articlesclosedjournals/bioinformatics/States0110.1093/BIOINFORMATICS/17.4.299https://doi.org/10.1093/bioinformatics/17.4.299https://dblp.org/rec/journals/bioinformatics/States01URL#6319375Matthias SteinfathWasco WruckHenrik SeidelHans LehrachUwe RadelofJohn O'BrienAutomated image analysis for array hybridization experiments.Bioinform.177634-6412001Journal Articlesclosedjournals/bioinformatics/SteinfathWSLRO0110.1093/BIOINFORMATICS/17.7.634https://doi.org/10.1093/bioinformatics/17.7.634https://dblp.org/rec/journals/bioinformatics/SteinfathWSLRO01URL#6319376Robert Stevens 0001Carole A. GoblePatricia G. BakerAndy BrassA classification of tasks in bioinformatics.Bioinform.171180-1882001Journal Articlesclosedjournals/bioinformatics/StevensGBB0110.1093/BIOINFORMATICS/17.2.180https://doi.org/10.1093/bioinformatics/17.2.180https://dblp.org/rec/journals/bioinformatics/StevensGBB01URL#6319377Christian J. Stoeckert Jr.Angel D. PizarroElisabetta ManduchiM. GibsonBrian P. BrunkJonathan CrabtreeJonathan SchugShai Shen-OrrG. Christian OvertonA relational schema for both array-based and SAGE gene expression experiments.Bioinform.174300-3082001Journal Articlesclosedjournals/bioinformatics/StoeckertPMGBCSSO0110.1093/BIOINFORMATICS/17.4.300https://doi.org/10.1093/bioinformatics/17.4.300https://dblp.org/rec/journals/bioinformatics/StoeckertPMGBCSSO01URL#6319378Christian E. V. StormErik L. L. SonnhammerNIFAS: visual analysis of domain evolution in proteins.Bioinform.174343-3482001Journal Articlesclosedjournals/bioinformatics/StormS0110.1093/BIOINFORMATICS/17.4.343https://doi.org/10.1093/bioinformatics/17.4.343https://dblp.org/rec/journals/bioinformatics/StormS01URL#6319379P. M. StothardCOMBOSA3D: combining sequence alignments with three-dimensional structures.Bioinform.171198-1992001Journal Articlesclosedjournals/bioinformatics/Stothard0110.1093/BIOINFORMATICS/17.2.198https://doi.org/10.1093/bioinformatics/17.2.198https://dblp.org/rec/journals/bioinformatics/Stothard01URL#6319380S. SujathaS. BalajiNarayanaswamy SrinivasanPALI: a database of alignments and phylogeny of homologous protein structures.Bioinform.174375-3762001Journal Articlesclosedjournals/bioinformatics/SujathaBS0110.1093/BIOINFORMATICS/17.4.375https://doi.org/10.1093/bioinformatics/17.4.375https://dblp.org/rec/journals/bioinformatics/SujathaBS01URL#6319381Baris E. SuzekMaria D. ErmolaevaMark J. SchreiberSteven SalzbergA probabilistic method for identifying start codons in bacterial genomes.Bioinform.17121123-11302001Journal Articlesclosedjournals/bioinformatics/SuzekESS0110.1093/BIOINFORMATICS/17.12.1123https://doi.org/10.1093/bioinformatics/17.12.1123https://dblp.org/rec/journals/bioinformatics/SuzekESS01URL#6319382Yoshiyuki SuzukiTakashi GojoboriMasatoshi NeiADAPTSITE: detecting natural selection at single amino acid sites.Bioinform.177660-6612001Journal Articlesclosedjournals/bioinformatics/SuzukiGN0110.1093/BIOINFORMATICS/17.7.660https://doi.org/10.1093/bioinformatics/17.7.660https://dblp.org/rec/journals/bioinformatics/SuzukiGN01URL#6319383Jack E. TabaskaRamana V. DavuluriMichael Q. ZhangIdentifying the 3'-terminal exon in human DNA.Bioinform.177602-6072001Journal Articlesclosedjournals/bioinformatics/TabaskaDZ0110.1093/BIOINFORMATICS/17.7.602https://doi.org/10.1093/bioinformatics/17.7.602https://dblp.org/rec/journals/bioinformatics/TabaskaDZ01URL#6319384Debraj Guha ThakurtaGary D. StormoIdentifying target sites for cooperatively binding factors.Bioinform.177608-6212001Journal Articlesclosedjournals/bioinformatics/ThakurtaS0110.1093/BIOINFORMATICS/17.7.608https://doi.org/10.1093/bioinformatics/17.7.608https://dblp.org/rec/journals/bioinformatics/ThakurtaS01URL#6319385Gert ThijsMagali LescotKathleen MarchalStephane RombautsBart De MoorPierre RouzéYves MoreauA higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.Bioinform.17121113-11222001Journal Articlesclosedjournals/bioinformatics/ThijsLMRMRM0110.1093/BIOINFORMATICS/17.12.1113https://doi.org/10.1093/bioinformatics/17.12.1113https://dblp.org/rec/journals/bioinformatics/ThijsLMRMRM01URL#6319386Kurt S. ThornAndrew A. BoganASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions.Bioinform.173284-2852001Journal Articlesclosedjournals/bioinformatics/ThornB0110.1093/BIOINFORMATICS/17.3.284https://doi.org/10.1093/bioinformatics/17.3.284https://dblp.org/rec/journals/bioinformatics/ThornB01URL#6319387Roberto C. TogawaJohn F. AntoniwJonathan G. L. MullinsTMCompare: transmembrane region sequence and structure.Bioinform.17121238-12392001Journal Articlesclosedjournals/bioinformatics/TogawaAM0110.1093/BIOINFORMATICS/17.12.1238https://doi.org/10.1093/bioinformatics/17.12.1238https://dblp.org/rec/journals/bioinformatics/TogawaAM01URL#6319388Masaru TomitaTowards Computer Aided Design (CAD) of Useful Microorganisms.Bioinform.17121091-10922001Journal Articlesclosedjournals/bioinformatics/Tomita0110.1093/BIOINFORMATICS/17.12.1091https://doi.org/10.1093/bioinformatics/17.12.1091https://dblp.org/rec/journals/bioinformatics/Tomita01URL#6319389Frédéric ToresEmmanuel BarillotThe art of pedigree drawing: algorithmic aspects.Bioinform.171174-1792001Journal Articlesclosedjournals/bioinformatics/ToresB0110.1093/BIOINFORMATICS/17.2.174https://doi.org/10.1093/bioinformatics/17.2.174https://dblp.org/rec/journals/bioinformatics/ToresB01URL#6319390Olga G. TroyanskayaMichael N. CantorGavin SherlockPatrick O. BrownTrevor HastieRobert TibshiraniDavid BotsteinRuss B. AltmanMissing value estimation methods for DNA microarrays.Bioinform.176520-5252001Journal Articlesclosedjournals/bioinformatics/TroyanskayaCSBHTBA0110.1093/BIOINFORMATICS/17.6.520https://doi.org/10.1093/bioinformatics/17.6.520https://dblp.org/rec/journals/bioinformatics/TroyanskayaCSBHTBA01URL#6319391Jerry TsaiNeil VossMark GersteinDetermining the minimum number of types necessary to represent the sizes of protein atoms.Bioinform.1710949-9562001Journal Articlesclosedjournals/bioinformatics/TsaiVG0110.1093/BIOINFORMATICS/17.10.949https://doi.org/10.1093/bioinformatics/17.10.949https://dblp.org/rec/journals/bioinformatics/TsaiVG01URL#6319392Gábor E. TusnádyIstván SimonThe HMMTOP transmembrane topology prediction server.Bioinform.179849-8502001Journal Articlesclosedjournals/bioinformatics/TusnadyS0110.1093/BIOINFORMATICS/17.9.849https://doi.org/10.1093/bioinformatics/17.9.849https://dblp.org/rec/journals/bioinformatics/TusnadyS01URL#6319393Martin VingronBioinformatics needs to adopt statistical thinking - Editorial.Bioinform.175389-3902001Journal Articlesclosedjournals/bioinformatics/Vingron0110.1093/BIOINFORMATICS/17.5.389https://doi.org/10.1093/bioinformatics/17.5.389https://dblp.org/rec/journals/bioinformatics/Vingron01URL#6319394Andreas WagnerHow to reconstruct a large genetic network from n gene perturbations in fewer than n2 easy steps.Bioinform.17121183-11972001Journal Articlesclosedjournals/bioinformatics/Wagner0110.1093/BIOINFORMATICS/17.12.1183https://doi.org/10.1093/bioinformatics/17.12.1183https://dblp.org/rec/journals/bioinformatics/Wagner01URL#6319395Michael E. WallPatricia A. DyckThomas S. BrettinSVDMAN-singular value decomposition analysis of microarray data.Bioinform.176566-5682001Journal Articlesclosedjournals/bioinformatics/WallDB0110.1093/BIOINFORMATICS/17.6.566https://doi.org/10.1093/bioinformatics/17.6.566https://dblp.org/rec/journals/bioinformatics/WallDB01URL#6319396John M. WardIdentification of novel families of membrane proteins from the model plant Arabidopsis thaliana.Bioinform.176560-5632001Journal Articlesclosedjournals/bioinformatics/Ward0110.1093/BIOINFORMATICS/17.6.560https://doi.org/10.1093/bioinformatics/17.6.560https://dblp.org/rec/journals/bioinformatics/Ward01URL#6319397Caleb WebberGeoffrey J. BartonEstimation of P-values for global alignments of protein sequences.Bioinform.17121158-11672001Journal Articlesclosedjournals/bioinformatics/WebberB0110.1093/BIOINFORMATICS/17.12.1158https://doi.org/10.1093/bioinformatics/17.12.1158https://dblp.org/rec/journals/bioinformatics/WebberB01URL#6319398Michael WildpanerGeorg Schneider 0001Alexander SchleifferFrank EisenhaberTaxonomy workbench.Bioinform.17121179-11822001Journal Articlesclosedjournals/bioinformatics/WildpanerSSE0110.1093/BIOINFORMATICS/17.12.1179https://doi.org/10.1093/bioinformatics/17.12.1179https://dblp.org/rec/journals/bioinformatics/WildpanerSSE01URL#6319399Xuhua XiaZheng XieAMADA: analysis of microarray data.Bioinform.176569-5702001Journal Articlesclosedjournals/bioinformatics/XiaX0110.1093/BIOINFORMATICS/17.6.569https://doi.org/10.1093/bioinformatics/17.6.569https://dblp.org/rec/journals/bioinformatics/XiaX01URL#6319400Liqun XingVolker BrendelMulti-query sequence BLAST output examination with MuSeqBox.Bioinform.178744-7452001Journal Articlesclosedjournals/bioinformatics/XingB0110.1093/BIOINFORMATICS/17.8.744https://doi.org/10.1093/bioinformatics/17.8.744https://dblp.org/rec/journals/bioinformatics/XingB01URL#6319401Ka Yee YeungChris FraleyAlejandro MuruaAdrian E. RafteryWalter L. RuzzoModel-based clustering and data transformations for gene expression data.Bioinform.1710977-9872001Journal Articlesclosedjournals/bioinformatics/YeungFMRR0110.1093/BIOINFORMATICS/17.10.977https://doi.org/10.1093/bioinformatics/17.10.977https://dblp.org/rec/journals/bioinformatics/YeungFMRR01URL#6319402Ka Yee YeungDavid R. HaynorWalter L. RuzzoValidating clustering for gene expression data.Bioinform.174309-3182001Journal Articlesclosedjournals/bioinformatics/YeungHR0110.1093/BIOINFORMATICS/17.4.309https://doi.org/10.1093/bioinformatics/17.4.309https://dblp.org/rec/journals/bioinformatics/YeungHR01URL#6319403Ka Yee YeungWalter L. RuzzoPrincipal component analysis for clustering gene expression data.Bioinform.179763-7742001Journal Articlesclosedjournals/bioinformatics/YeungR0110.1093/BIOINFORMATICS/17.9.763https://doi.org/10.1093/bioinformatics/17.9.763https://dblp.org/rec/journals/bioinformatics/YeungR01URL#6319404Evgeni M. ZdobnovRolf ApweilerInterProScan - an integration platform for the signature-recognition methods in InterPro.Bioinform.179847-8482001Journal Articlesclosedjournals/bioinformatics/ZdobnovA0110.1093/BIOINFORMATICS/17.9.847https://doi.org/10.1093/bioinformatics/17.9.847https://dblp.org/rec/journals/bioinformatics/ZdobnovA01URL#6319405Louxin ZhangChew-Kiat HengTin Wee TanCladogramer: incorporating haplotype frequency into cladogram analysis.Bioinform.175481-4822001Journal Articlesclosedjournals/bioinformatics/ZhangHT0110.1093/BIOINFORMATICS/17.5.481https://doi.org/10.1093/bioinformatics/17.5.481https://dblp.org/rec/journals/bioinformatics/ZhangHT01URL#6319406Theresa ZhangMichael Q. ZhangPromoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes.Bioinform.17121232-12332001Journal Articlesclosedjournals/bioinformatics/ZhangZ0110.1093/BIOINFORMATICS/17.12.1232https://doi.org/10.1093/bioinformatics/17.12.1232https://dblp.org/rec/journals/bioinformatics/ZhangZ01URL#6319407Christian M. ZmasekSean R. EddyA simple algorithm to infer gene duplication and speciation events on a gene tree.Bioinform.179821-8282001Journal Articlesclosedjournals/bioinformatics/ZmasekE0110.1093/BIOINFORMATICS/17.9.821https://doi.org/10.1093/bioinformatics/17.9.821https://dblp.org/rec/journals/bioinformatics/ZmasekE01URL#6319408Christian M. ZmasekSean R. EddyATV: display and manipulation of annotated phylogenetic.Bioinform.174383-3842001Journal Articlesclosedjournals/bioinformatics/ZmasekE01a10.1093/BIOINFORMATICS/17.4.383https://doi.org/10.1093/bioinformatics/17.4.383https://dblp.org/rec/journals/bioinformatics/ZmasekE01aURL#6319409