:facetid:toc:\"db/journals/biomedsem/biomedsem9.bht\"OK:facetid:toc:db/journals/biomedsem/biomedsem9.bhtAsan AgibetovErnesto Jiménez-RuizMarta OndresikAlessandro SolimandoImon BanerjeeGiovanna GuerriniChiara Eva CatalanoJoaquim Miguel OliveiraGiuseppe Patanè 0001Rui Luís ReisMichela SpagnuoloSupporting shared hypothesis testing in the biomedical domain.J. Biomed. Semant.919:1-9:222018Journal Articlesopenjournals/biomedsem/AgibetovJOSBGCO1810.1186/S13326-018-0177-Xhttps://doi.org/10.1186/s13326-018-0177-xhttps://dblp.org/rec/journals/biomedsem/AgibetovJOSBGCO18URL#2378589Muhammad AmithCui TaoRepresenting vaccine misinformation using ontologies.J. Biomed. Semant.9122:1-22:132018Journal Articlesopenjournals/biomedsem/AmithT1810.1186/S13326-018-0190-0https://doi.org/10.1186/s13326-018-0190-0https://dblp.org/rec/journals/biomedsem/AmithT18URL#2378590Joana M. BarrosJim DugganDietrich Rebholz-SchuhmannDisease mentions in airport and hospital geolocations expose dominance of news events for disease concerns.J. Biomed. Semant.9118:1-18:112018Journal Articlesopenjournals/biomedsem/BarrosDR1810.1186/S13326-018-0186-9https://doi.org/10.1186/s13326-018-0186-9https://dblp.org/rec/journals/biomedsem/BarrosDR18URL#2378591Mercedes Argüello CasteleiroGeorge DemetriouWarren J. ReadMaria Jesus Fernandez PrietoNava MarotoDiego Maseda-FernandezGoran NenadicJulie Klein 0002John A. KeaneRobert Stevens 0001Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature.J. Biomed. Semant.9113:1-13:242018Journal Articlesopenjournals/biomedsem/CasteleiroDRPMM1810.1186/S13326-018-0181-1https://doi.org/10.1186/s13326-018-0181-1https://dblp.org/rec/journals/biomedsem/CasteleiroDRPMM18URL#2378592Nagesh Panyam ChandrasekarasastryKarin VerspoorTrevor CohnKotagiri RamamohanaraoExploiting graph kernels for high performance biomedical relation extraction.J. Biomed. Semant.917:1-7:112018Journal Articlesopenjournals/biomedsem/Chandrasekarasastry1810.1186/S13326-017-0168-3https://doi.org/10.1186/s13326-017-0168-3https://dblp.org/rec/journals/biomedsem/Chandrasekarasastry18URL#2378593Shaker H. Ali El-SappaghDaehan KwakFarman Ali 0001Kyung Sup KwakDMTO: a realistic ontology for standard diabetes mellitus treatment.J. Biomed. Semant.918:1-8:302018Journal Articlesopenjournals/biomedsem/El-SappaghKAK1810.1186/S13326-018-0176-Yhttps://doi.org/10.1186/s13326-018-0176-yhttps://dblp.org/rec/journals/biomedsem/El-SappaghKAK18URL#2378594Daniel FariaCatia PesquitaIsabela MottCatarina MartinsFrancisco M. CoutoIsabel F. CruzTackling the challenges of matching biomedical ontologies.J. Biomed. Semant.914:1-4:192018Journal Articlesopenjournals/biomedsem/FariaPMMCC1810.1186/S13326-017-0170-9https://doi.org/10.1186/s13326-017-0170-9https://dblp.org/rec/journals/biomedsem/FariaPMMCC18URL#2378595Yongqun HeZuoshuang XiangJie Zheng 0001Yu LinJames A. OvertonEdison OngThe eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.J. Biomed. Semant.913:1-3:102018Journal Articlesopenjournals/biomedsem/HeXZLOO1810.1186/S13326-017-0169-2https://doi.org/10.1186/s13326-017-0169-2https://dblp.org/rec/journals/biomedsem/HeXZLOO18URL#2378596Junguk HurArzucan ÖzgürYongqun HeOntology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.J. Biomed. Semant.9117:1-17:102018Journal Articlesopenjournals/biomedsem/HurOH1810.1186/S13326-018-0185-Xhttps://doi.org/10.1186/s13326-018-0185-xhttps://dblp.org/rec/journals/biomedsem/HurOH18URL#2378597John JudkinsJessica Tay-SontheimerRichard D. BoyceMathias BrochhausenExtending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse.J. Biomed. Semant.9115:1-15:92018Journal Articlesopenjournals/biomedsem/JudkinsTBB1810.1186/S13326-018-0183-Zhttps://doi.org/10.1186/s13326-018-0183-zhttps://dblp.org/rec/journals/biomedsem/JudkinsTBB18URL#2378598Prodromos KolyvakisAlexandros KalousisBarry Smith 0001Dimitris KiritsisBiomedical ontology alignment: an approach based on representation learning.J. Biomed. Semant.9121:1-21:202018Journal Articlesopenjournals/biomedsem/KolyvakisKSK1810.1186/S13326-018-0187-8https://doi.org/10.1186/s13326-018-0187-8https://dblp.org/rec/journals/biomedsem/KolyvakisKSK18URL#2378599Stefan KropfAlexandr UciteliKatrin SchierlePeter KrückenKerstin DeneckeHeinrich HerreQuerying archetype-based EHRs by search ontology-based XPath engineering.J. Biomed. Semant.9116:1-16:142018Journal Articlesopenjournals/biomedsem/KropfUSKDH1810.1186/S13326-018-0180-2https://doi.org/10.1186/s13326-018-0180-2https://dblp.org/rec/journals/biomedsem/KropfUSKDH18URL#2378600Nicolas MatentzogluJames MaloneChris MungallRobert Stevens 0001MIRO: guidelines for minimum information for the reporting of an ontology.J. Biomed. Semant.916:1-6:132018Journal Articlesopenjournals/biomedsem/MatentzogluMMS1810.1186/S13326-017-0172-7https://doi.org/10.1186/s13326-017-0172-7https://dblp.org/rec/journals/biomedsem/MatentzogluMMS18URL#2378601Alejandro Metke-JimenezJim SteelDavid P. HansenMichael LawleyOntoserver: a syndicated terminology server.J. Biomed. Semant.9124:1-24:102018Journal Articlesopenjournals/biomedsem/Metke-JimenezSH1810.1186/S13326-018-0191-Zhttps://doi.org/10.1186/s13326-018-0191-zhttps://dblp.org/rec/journals/biomedsem/Metke-JimenezSH18URL#2378602Aurélie NévéolHercules DalianisSumithra VelupillaiGuergana SavovaPierre ZweigenbaumClinical Natural Language Processing in languages other than English: opportunities and challenges.J. Biomed. Semant.9112:1-12:132018Journal Articlesopenjournals/biomedsem/NeveolDVSZ1810.1186/S13326-018-0179-8https://doi.org/10.1186/s13326-018-0179-8https://dblp.org/rec/journals/biomedsem/NeveolDVSZ18URL#2378603Daniela Oliveira 0002Catia PesquitaImproving the interoperability of biomedical ontologies with compound alignments.J. Biomed. Semant.911:1-1:132018Journal Articlesopenjournals/biomedsem/OliveiraP1810.1186/S13326-017-0171-8https://doi.org/10.1186/s13326-017-0171-8https://dblp.org/rec/journals/biomedsem/OliveiraP18URL#2378604John David OsborneMatthew B. NeuMaria I. DanilaThamar SolorioSteven J. BethardCUILESS2016: a clinical corpus applying compositional normalization of text mentions.J. Biomed. Semant.912:1-2:92018Journal Articlesopenjournals/biomedsem/OsborneNDSB1810.1186/S13326-017-0173-6https://doi.org/10.1186/s13326-017-0173-6https://dblp.org/rec/journals/biomedsem/OsborneNDSB18URL#2378605David Osumi-SutherlandEnrico PontaMélanie CourtotHelen E. ParkinsonLaura BadiUsing OWL reasoning to support the generation of novel gene sets for enrichment analysis.J. Biomed. Semant.9110:1-10:102018Journal Articlesopenjournals/biomedsem/Osumi-Sutherland1810.1186/S13326-018-0175-Zhttps://doi.org/10.1186/s13326-018-0175-zhttps://dblp.org/rec/journals/biomedsem/Osumi-Sutherland18URL#2378606Thomas C. RindfleschCatherine BlakeMichael J. CairelliMarcelo FiszmanCaroline J. ZeissHalil KilicogluInvestigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing.J. Biomed. Semant.9125:1-25:142018Journal Articlesopenjournals/biomedsem/RindfleschBCFZK1810.1186/S13326-018-0192-Yhttps://doi.org/10.1186/s13326-018-0192-yhttps://dblp.org/rec/journals/biomedsem/RindfleschBCFZK18URL#2378607Viktor SenderovKiril SimovNico M. FranzPavel StoevTerry CatapanoDonat AgostiGuido SautterRobert A. Morris 0002Lyubomir PenevOpenBiodiv-O: ontology of the OpenBiodiv knowledge management system.J. Biomed. Semant.915:1-5:152018Journal Articlesopenjournals/biomedsem/SenderovSFSCASM1810.1186/S13326-017-0174-5https://doi.org/10.1186/s13326-017-0174-5https://dblp.org/rec/journals/biomedsem/SenderovSFSCASM18URL#2378608Ying Shen 0001Daoyuan ChenBuzhou TangMin Yang 0007Kai LeiEAPB: entropy-aware path-based metric for ontology quality.J. Biomed. Semant.9120:1-20:112018Journal Articlesopenjournals/biomedsem/ShenCTYL1810.1186/S13326-018-0188-7https://doi.org/10.1186/s13326-018-0188-7https://dblp.org/rec/journals/biomedsem/ShenCTYL18URL#2378609Elena SolovievaToshihide ShikanaiNoriaki FujitaHisashi NarimatsuGGDonto ontology as a knowledge-base for genetic diseases and disorders of glycan metabolism and their causative genes.J. Biomed. Semant.9114:1-14:142018Journal Articlesopenjournals/biomedsem/SolovievaSFN1810.1186/S13326-018-0182-0https://doi.org/10.1186/s13326-018-0182-0https://dblp.org/rec/journals/biomedsem/SolovievaSFN18URL#2378610Wytze J. VlietstraRein VosAnneke M. SijbersErik M. van MulligenJan A. KorsUsing predicate and provenance information from a knowledge graph for drug efficacy screening.J. Biomed. Semant.9123:1-23:102018Journal Articlesopenjournals/biomedsem/VlietstraVSMK1810.1186/S13326-018-0189-6https://doi.org/10.1186/s13326-018-0189-6https://dblp.org/rec/journals/biomedsem/VlietstraVSMK18URL#2378611Junxiang WangLiang Zhao 0002Yanfang Ye 0001Yuji ZhangAdverse event detection by integrating twitter data and VAERS.J. Biomed. Semant.9119:1-19:102018Journal Articlesopenjournals/biomedsem/WangZYZ1810.1186/S13326-018-0184-Yhttps://doi.org/10.1186/s13326-018-0184-yhttps://dblp.org/rec/journals/biomedsem/WangZYZ18URL#2378612Mengyi ZhaoSongmao ZhangWeizhuo LiGuowei ChenMatching biomedical ontologies based on formal concept analysis.J. Biomed. Semant.9111:1-11:272018Journal Articlesopenjournals/biomedsem/ZhaoZLC1810.1186/S13326-018-0178-9https://doi.org/10.1186/s13326-018-0178-9https://dblp.org/rec/journals/biomedsem/ZhaoZLC18URL#2378613