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@article{DBLP:journals/biodatamining/BatistaMFBGMCPM24,
author = {Sandra Batista and
Vered Madar and
Philip J. Freda and
Priyanka Bhandary and
Attri Ghosh and
Nicholas Matsumoto and
Apurva S. Chitre and
Abraham A. Palmer and
Jason H. Moore},
title = {Interaction models matter: an efficient, flexible computational framework
for model-specific investigation of epistasis},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-024-00358-0},
doi = {10.1186/S13040-024-00358-0},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/BatistaMFBGMCPM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChungCHZCC24,
author = {Chih{-}Wei Chung and
Seng{-}Cho Chou and
Tzu{-}Hung Hsiao and
Grace Joyce Zhang and
Yu{-}Fang Chung and
Yi{-}Ming Chen},
title = {Machine learning approaches to identify systemic lupus erythematosus
in anti-nuclear antibody-positive patients using genomic data and
electronic health records},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-023-00352-y},
doi = {10.1186/S13040-023-00352-Y},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ChungCHZCC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DaiYZYXM24,
author = {Xiao{-}Ce Dai and
Yi Yu and
Si{-}Yu Zhou and
Shuo Yu and
Mei{-}Xiang Xiang and
Hong Ma},
title = {Assessment of the causal relationship between gut microbiota and cardiovascular
diseases: a bidirectional Mendelian randomization analysis},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-024-00356-2},
doi = {10.1186/S13040-024-00356-2},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/DaiYZYXM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FonsecaSBCS24,
author = {Andr{\'{e}} Fonseca and
Mikolaj Spytek and
Przemyslaw Biecek and
Clara Cordeiro and
Nuno Sep{\'{u}}lveda},
title = {Antibody selection strategies and their impact in predicting clinical
malaria based on multi-sera data},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-024-00354-4},
doi = {10.1186/S13040-024-00354-4},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/FonsecaSBCS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OdongoDC24,
author = {Regan Odongo and
Asuman Demiroglu{-}Zergeroglu and
Tunahan {\c{C}}akir},
title = {A network-based drug prioritization and combination analysis for the
{MEK5/ERK5} pathway in breast cancer},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-024-00357-1},
doi = {10.1186/S13040-024-00357-1},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/OdongoDC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SrithanyaratTSRLL24,
author = {Thanyawee Srithanyarat and
Kittisak Taoma and
Thana Sutthibutpong and
Marasri Ruengjitchatchawalya and
Monrudee Liangruksa and
Teeraphan Laomettachit},
title = {Interpreting drug synergy in breast cancer with deep learning using
target-protein inhibition profiles},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-024-00359-z},
doi = {10.1186/S13040-024-00359-Z},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SrithanyaratTSRLL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SulemanAAK24,
author = {Muhammad Taseer Suleman and
Fahad Alturise and
Tamim Alkhalifah and
Yaser Daanial Khan},
title = {m1A-Ensem: accurate identification of 1-methyladenosine sites through
ensemble models},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-023-00353-x},
doi = {10.1186/S13040-023-00353-X},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SulemanAAK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YaldizERIS24,
author = {Burcu Yaldiz and
Onur Erdogan and
Sevda Rafatov and
Cem Iyig{\"{u}}n and
Yesim Aydin Son},
title = {Revealing third-order interactions through the integration of machine
learning and entropy methods in genomic studies},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-024-00355-3},
doi = {10.1186/S13040-024-00355-3},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/YaldizERIS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YaoJLLYWC24,
author = {Xiaohui Yao and
Xiaohan Jiang and
Haoran Luo and
Hong Liang and
Xiufen Ye and
Yanhui Wei and
Shan Cong},
title = {{MOCAT:} multi-omics integration with auxiliary classifiers enhanced
autoencoder},
journal = {BioData Min.},
volume = {17},
number = {1},
year = {2024},
url = {https://doi.org/10.1186/s13040-024-00360-6},
doi = {10.1186/S13040-024-00360-6},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/YaoJLLYWC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AlasiriKCLMLAKS23,
author = {Abdulrahman Alasiri and
Konrad J. Karczewski and
Brian S. Cole and
Bao{-}Li Loza and
Jason H. Moore and
Sander W. Van der Laan and
Folkert W. Asselbergs and
Brendan J. Keating and
Jessica van Setten},
title = {LoFTK: a framework for fully automated calculation of predicted Loss-of-Function
variants and genes},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00321-5},
doi = {10.1186/S13040-023-00321-5},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AlasiriKCLMLAKS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AppiaheneADDM23,
author = {Peter Appiahene and
Justice Williams Asare and
Emmanuel Timmy Donkoh and
Giovanni Dimauro and
Rosalia Maglietta},
title = {Detection of iron deficiency anemia by medical images: a comparative
study of machine learning algorithms},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00319-z},
doi = {10.1186/S13040-023-00319-Z},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AppiaheneADDM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ArnalMFSM23,
author = {Diego Arnal and
Celeste Moya and
Luigi Filippelli and
Jaume Segura{-}Garcia and
Sergi Maicas},
title = {Bacteria spatial tracking in Urban Park soils with {MALDI-TOF} Mass
Spectrometry and Specific {PCR}},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-022-00318-6},
doi = {10.1186/S13040-022-00318-6},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ArnalMFSM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AzherSCZCSVL23,
author = {Zarif L. Azher and
Anish Suvarna and
Ji{-}Qing Chen and
Ze Zhang and
Brock C. Christensen and
Lucas A. Salas and
Louis J. Vaickus and
Joshua J. Levy},
title = {Assessment of emerging pretraining strategies in interpretable multimodal
deep learning for cancer prognostication},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00338-w},
doi = {10.1186/S13040-023-00338-W},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/AzherSCZCSVL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoJ23,
author = {Davide Chicco and
Giuseppe Jurman},
title = {Ten simple rules for providing bioinformatics support within a hospital},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00326-0},
doi = {10.1186/S13040-023-00326-0},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoJ23a,
author = {Davide Chicco and
Giuseppe Jurman},
title = {The Matthews correlation coefficient {(MCC)} should replace the {ROC}
{AUC} as the standard metric for assessing binary classification},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00322-4},
doi = {10.1186/S13040-023-00322-4},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoJ23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoSJ23,
author = {Davide Chicco and
Tiziana Sanavia and
Giuseppe Jurman},
title = {Signature literature review reveals AHCY, DPYSL3, and {NME1} as the
most recurrent prognostic genes for neuroblastoma},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00325-1},
doi = {10.1186/S13040-023-00325-1},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoSJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DatresPCPCDJ23,
author = {Massimiliano Datres and
Elisa Paolazzi and
Marco Chierici and
Matteo Pozzi and
Antonio Colangelo and
Marcello Dorian Donzella and
Giuseppe Jurman},
title = {Endoscopy-based {IBD} identification by a quantized deep learning
pipeline},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00350-0},
doi = {10.1186/S13040-023-00350-0},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/DatresPCPCDJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FredaGZLCPPGMCGWHIMLKPLM23,
author = {Philip J. Freda and
Attri Ghosh and
Elizabeth Zhang and
Tianhao Luo and
Apurva S. Chitre and
Oksana Polesskaya and
Celine L. St. Pierre and
Jianjun Gao and
Connor D. Martin and
Hao Chen and
Angel G. Garcia{-}Martinez and
Tengfei Wang and
Wenyan Han and
Keita Ishiwari and
Paul Meyer and
Alexander Lamparelli and
Christopher P. King and
Abraham A. Palmer and
Ruowang Li and
Jason H. Moore},
title = {Automated quantitative trait locus analysis (AutoQTL)},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00331-3},
doi = {10.1186/S13040-023-00331-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FredaGZLCPPGMCGWHIMLKPLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GreggM23,
author = {John T. Gregg and
Jason H. Moore},
title = {STAR{\_}outliers: a python package that separates univariate outliers
from non-normal distributions},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00342-0},
doi = {10.1186/S13040-023-00342-0},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/GreggM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HeLCLC23,
author = {Zhenxiang He and
Xiaoxia Li and
Yuling Chen and
Nianzu Lv and
Yong Cai},
title = {Attention-based dual-path feature fusion network for automatic skin
lesion segmentation},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00345-x},
doi = {10.1186/S13040-023-00345-X},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/HeLCLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuangHL23,
author = {Guohua Huang and
Xiaohong Huang and
Wei Luo},
title = {6mA-StackingCV: an improved stacking ensemble model for predicting
{DNA} N6-methyladenine site},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00348-8},
doi = {10.1186/S13040-023-00348-8},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/HuangHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JiangDCZLL23,
author = {Yun Jiang and
Jinkun Dong and
Tongtong Cheng and
Yuan Zhang and
Xin Lin and
Jing Liang},
title = {iU-Net: a hybrid structured network with a novel feature fusion approach
for medical image segmentation},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00320-6},
doi = {10.1186/S13040-023-00320-6},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/JiangDCZLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KosolwattanaLHHCL23,
author = {Tanapol Kosolwattana and
Chenang Liu and
Renjie Hu and
Shizhong Han and
Hua Chen and
Ying Lin},
title = {A self-inspected adaptive {SMOTE} algorithm {(SASMOTE)} for highly
imbalanced data classification in healthcare},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00330-4},
doi = {10.1186/S13040-023-00330-4},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/KosolwattanaLHHCL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiZCWLHYWP23,
author = {Wei Li and
Minghang Zhang and
Siyu Cai and
Liangliang Wu and
Chao Li and
Yuqi He and
Guibin Yang and
Jinghui Wang and
Yuanming Pan},
title = {Neural network-based prognostic predictive tool for gastric cardiac
cancer: the worldwide retrospective study},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00335-z},
doi = {10.1186/S13040-023-00335-Z},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LiZCWLHYWP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LuoLMSLRH23,
author = {Jing Luo and
Jundong Li and
Qi Mao and
Zhenghao Shi and
Haiqin Liu and
Xiaoyong Ren and
Xinhong Hei},
title = {Overlapping filter bank convolutional neural network for multisubject
multicategory motor imagery brain-computer interface},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00336-y},
doi = {10.1186/S13040-023-00336-Y},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LuoLMSLRH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MartinsCL23,
author = {Sofia Martins and
Roberta Coletti and
Marta B. Lopes},
title = {Disclosing transcriptomics network-based signatures of glioma heterogeneity
using sparse methods},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00341-1},
doi = {10.1186/S13040-023-00341-1},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/MartinsCL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MeyerUMOLPBTWGM23,
author = {Jesse G. Meyer and
Ryan J. Urbanowicz and
Patrick C. N. Martin and
Karen O'Connor and
Ruowang Li and
Pei{-}Chen Peng and
Tiffani J. Bright and
Nicholas P. Tatonetti and
Kyoung{-}Jae Won and
Graciela Gonzalez{-}Hernandez and
Jason H. Moore},
title = {ChatGPT and large language models in academia: opportunities and challenges},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00339-9},
doi = {10.1186/S13040-023-00339-9},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/MeyerUMOLPBTWGM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MunquadD23,
author = {Sana Munquad and
Asim Bikas Das},
title = {DeepAutoGlioma: a deep learning autoencoder-based multi-omics data
integration and classification tools for glioma subtyping},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00349-7},
doi = {10.1186/S13040-023-00349-7},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/MunquadD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NagySNMZ23,
author = {Naya Nagy and
Matthew Stuart{-}Edwards and
Marius Nagy and
Liam Mitchell and
Athanasios Zovoilis},
title = {Quantum analysis of squiggle data},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00343-z},
doi = {10.1186/S13040-023-00343-Z},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/NagySNMZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NicholsonARG23,
author = {David N. Nicholson and
Faisal Alquaddoomi and
Vincent Rubinetti and
Casey S. Greene},
title = {Changing word meanings in biomedical literature reveal pandemics and
new technologies},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00332-2},
doi = {10.1186/S13040-023-00332-2},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/NicholsonARG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OrdonezGuillenCLCA23,
author = {Nelson E. Ord{\'{o}}{\~{n}}ez{-}Guill{\'{e}}n and
Jos{\'{e}} Luis Gonz{\'{a}}lez Compe{\'{a}}n and
Ivan L{\'{o}}pez{-}Ar{\'{e}}valo and
Miguel Contreras{-}Murillo and
Edwin Aldana{-}Bobadilla},
title = {Machine learning based study for the classification of Type 2 diabetes
mellitus subtypes},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00340-2},
doi = {10.1186/S13040-023-00340-2},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/OrdonezGuillenCLCA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OuTLTYCBCLSCT23,
author = {Shuo{-}Ming Ou and
Ming{-}Tsun Tsai and
Kuo{-}Hua Lee and
Wei{-}Cheng Tseng and
Chih{-}Yu Yang and
Tz{-}Heng Chen and
Pin{-}Jie Bin and
Tzeng{-}Ji Chen and
Yao{-}Ping Lin and
Wayne Huey{-}Herng Sheu and
Yuan{-}Chia Chu and
Der{-}Cherng Tarng},
title = {Prediction of the risk of developing end-stage renal diseases in newly
diagnosed type 2 diabetes mellitus using artificial intelligence algorithms},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00324-2},
doi = {10.1186/S13040-023-00324-2},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/OuTLTYCBCLSCT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PanLP23,
author = {Weiquan Pan and
Faning Long and
Jian Pan},
title = {ScInfoVAE: interpretable dimensional reduction of single cell transcription
data with variational autoencoders and extended mutual information
regularization},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00333-1},
doi = {10.1186/S13040-023-00333-1},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PanLP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ParkLP23,
author = {Jiyoon Park and
Jae Won Lee and
Mira Park},
title = {Comparison of cancer subtype identification methods combined with
feature selection methods in omics data analysis},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00334-0},
doi = {10.1186/S13040-023-00334-0},
timestamp = {Tue, 09 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ParkLP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PetricaP23,
author = {Marian Petrica and
Ionel Popescu},
title = {Inverse problem for parameters identification in a modified {SIRD}
epidemic model using ensemble neural networks},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00337-x},
doi = {10.1186/S13040-023-00337-X},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PetricaP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RamezaniTBRGS23,
author = {Maryam Ramezani and
Amirhossein Takian and
Ahad Bakhtiari and
Hamid R. Rabiee and
Sadegh Ghazanfari and
Saharnaz Sazgarnejad},
title = {Research agenda for using artificial intelligence in health governance:
interpretive scoping review and framework},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00346-w},
doi = {10.1186/S13040-023-00346-W},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/RamezaniTBRGS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RysavyZ23,
author = {Petr Rysav{\'{y}} and
Filip Zelezn{\'{y}}},
title = {Reference-free phylogeny from sequencing data},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00329-x},
doi = {10.1186/S13040-023-00329-X},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RysavyZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SchmidGSCSKAFG23,
author = {Nico Schmid and
Mihnea Ghinescu and
Moritz Schanz and
Micha Christ and
Severin Schricker and
Markus Ketteler and
Mark Dominik Alscher and
Ulrich Franke and
Nora Goebel},
title = {Algorithm-based detection of acute kidney injury according to full
{KDIGO} criteria including urine output following cardiac surgery:
a descriptive analysis},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00323-3},
doi = {10.1186/S13040-023-00323-3},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SchmidGSCSKAFG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SpanigMH23,
author = {Sebastian Sp{\"{a}}nig and
Alexander Michel and
Dominik Heider},
title = {Unsupervised encoding selection through ensemble pruning for biomedical
classification},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-022-00317-7},
doi = {10.1186/S13040-022-00317-7},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SpanigMH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WangLWJYY23,
author = {Mengying Wang and
Cuixia Lee and
Zhenhao Wei and
Hong Ji and
Yingyun Yang and
Cheng Yang},
title = {Clinical assistant decision-making model of tuberculosis based on
electronic health records},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00328-y},
doi = {10.1186/S13040-023-00328-Y},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WangLWJYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WilliamsM23,
author = {Scott M. Williams and
Jason H. Moore},
title = {Genetics and precision health: the ecological fallacy and artificial
intelligence solutions},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00327-z},
doi = {10.1186/S13040-023-00327-Z},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WilliamsM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YanZWYLYZW23,
author = {Qian Yan and
Wenjiang Zheng and
Boqing Wang and
Baoqian Ye and
Huiyan Luo and
Xinqian Yang and
Ping Zhang and
Xiongwen Wang},
title = {Correction: {A} prognostic model based on seven immune-related genes
predicts the overall survival of patients with hepatocellular carcinoma},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00347-9},
doi = {10.1186/S13040-023-00347-9},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/YanZWYLYZW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YangCCHWC23,
author = {Tzong{-}Hann Yang and
Yu{-}Fu Chen and
Yen{-}Fu Cheng and
Jue{-}Ni Huang and
Chuan{-}Song Wu and
Yuan{-}Chia Chu},
title = {Optimizing age-related hearing risk predictions: an advanced machine
learning integration with {HHIE-S}},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00351-z},
doi = {10.1186/S13040-023-00351-Z},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/YangCCHWC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZiadSFM23,
author = {Elnaz Ziad and
Somayeh Sadat and
Farshad Farzadfar and
Mohammad{-}Reza Malekpour},
title = {Prescription pattern analysis of Type 2 Diabetes Mellitus: a cross-sectional
study in Isfahan, Iran},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00344-y},
doi = {10.1186/S13040-023-00344-Y},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ZiadSFM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AbassiM22,
author = {Rahibu A. Abassi and
Amina S. Msengwa},
title = {Classification of breast cancer recurrence based on imputed data:
a simulation study},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00316-8},
doi = {10.1186/S13040-022-00316-8},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AbassiM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AbdelwahedEM22,
author = {Noura Mohammed Abdelwahed and
Ghada Samy El{-}Tawel and
M. A. Makhlouf},
title = {Effective hybrid feature selection using different bootstrap enhances
cancers classification performance},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00304-y},
doi = {10.1186/S13040-022-00304-Y},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/AbdelwahedEM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AlSaadMB22,
author = {Rawan AlSaad and
Qutaibah M. Malluhi and
Sabri Boughorbel},
title = {PredictPTB: an interpretable preterm birth prediction model using
attention-based recurrent neural networks},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00289-8},
doi = {10.1186/S13040-022-00289-8},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/AlSaadMB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AnuntakarunLLWR22,
author = {Songtham Anuntakarun and
Supatcha Lertampaiporn and
Teeraphan Laomettachit and
Warin Wattanapornprom and
Marasri Ruengjitchatchawalya},
title = {mSRFR: a machine learning model using microalgal signature features
for ncRNA classification},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00291-0},
doi = {10.1186/S13040-022-00291-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AnuntakarunLLWR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BrownSJW22,
author = {Donald E. Brown and
Suchetha Sharma and
James A. Jablonski and
Arthur Weltman},
title = {Neural network methods for diagnosing patient conditions from cardiopulmonary
exercise testing data},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00299-6},
doi = {10.1186/S13040-022-00299-6},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BrownSJW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BundyJWGSE22,
author = {Joseph L. Bundy and
Richard S. Judson and
Antony J. Williams and
Christopher M. Grulke and
Imran Shah and
Logan J. Everett},
title = {Predicting molecular initiating events using chemical target annotations
and gene expression},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00292-z},
doi = {10.1186/S13040-022-00292-Z},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/BundyJWGSE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoARJ22,
author = {Davide Chicco and
Abbas Alameer and
Sara Rahmati and
Giuseppe Jurman},
title = {Towards a potential pan-cancer prognostic signature for gene expression
based on probesets and ensemble machine learning},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00312-y},
doi = {10.1186/S13040-022-00312-Y},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoARJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Chushig-MuzoSMM22,
author = {David Chushig{-}Muzo and
Cristina Soguero{-}Ru{\'{\i}}z and
Pablo de Miguel{-}Bohoyo and
Inmaculada Mora{-}Jim{\'{e}}nez},
title = {Learning and visualizing chronic latent representations using electronic
health records},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00303-z},
doi = {10.1186/S13040-022-00303-Z},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/Chushig-MuzoSMM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DevkotaMM22,
author = {Pratik Devkota and
Somya D. Mohanty and
Prashanti Manda},
title = {A Gated Recurrent Unit based architecture for recognizing ontology
concepts from biological literature},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00310-0},
doi = {10.1186/S13040-022-00310-0},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/DevkotaMM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DoraDSGL22,
author = {David Dora and
Timea Dora and
Gabor Szegvari and
Csongor Gerd{\'{a}}n and
Zoltan Lohinai},
title = {EZCancerTarget: an open-access drug repurposing and data-collection
tool to enhance target validation and optimize international research
efforts against highly progressive cancers},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00307-9},
doi = {10.1186/S13040-022-00307-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DoraDSGL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/EidLPBSGB22,
author = {Rayan Eid and
Claudine Land{\`{e}}s and
Alix Pernet and
Emmanuel Beno{\^{\i}}t and
Pierre Santagostini and
Angelina El Ghaziri and
Julie Bourbeillon},
title = {{DIVIS:} a semantic DIstance to improve the VISualisation of heterogeneous
phenotypic datasets},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00293-y},
doi = {10.1186/S13040-022-00293-Y},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/EidLPBSGB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FredaKM22,
author = {Philip J. Freda and
Henry R. Kranzler and
Jason H. Moore},
title = {Novel digital approaches to the assessment of problematic opioid use},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00301-1},
doi = {10.1186/S13040-022-00301-1},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/FredaKM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GundogduLADN22,
author = {Pelin Gundogdu and
Carlos Loucera and
Inmaculada Alamo{-}Alvarez and
Joaqu{\'{\i}}n Dopazo and
Isabel Nepomuceno},
title = {Integrating pathway knowledge with deep neural networks to reduce
the dimensionality in single-cell RNA-seq data},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-021-00285-4},
doi = {10.1186/S13040-021-00285-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GundogduLADN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JoiretJGS22,
author = {Marc Joiret and
Jestinah M. Mahachie John and
Elena S. Gusareva and
Kristel Van Steen},
title = {Correction: Confounding of linkage disequilibrium patterns in large
scale {DNA} based gene-gene interaction studies},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00296-9},
doi = {10.1186/S13040-022-00296-9},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/JoiretJGS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiYWLYLW22,
author = {Shaochuan Li and
Yuning Yang and
Xin Wang and
Jun Li and
Jun Yu and
Xiangtao Li and
Ka{-}Chun Wong},
title = {Colorectal cancer subtype identification from differential gene expression
levels using minimalist deep learning},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00295-w},
doi = {10.1186/S13040-022-00295-W},
timestamp = {Thu, 22 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LiYWLYLW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LuleciY22,
author = {Hatice B{\"{u}}sra L{\"{u}}leci and
Alper Yilmaz},
title = {Robust and rigorous identification of tissue-specific genes by statistically
extending tau score},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00315-9},
doi = {10.1186/S13040-022-00315-9},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LuleciY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NaddaBB22,
author = {Wanchaloem Nadda and
Waraporn Boonchieng and
Ekkarat Boonchieng},
title = {Influenza, dengue and common cold detection using {LSTM} with fully
connected neural network and keywords selection},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00288-9},
doi = {10.1186/S13040-022-00288-9},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/NaddaBB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NascimbenRCV22,
author = {Mauro Nascimben and
Lia Rimondini and
Davide Cor{\`{a}} and
Manolo Venturin},
title = {Polygenic risk modeling of tumor stage and survival in bladder cancer},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00306-w},
doi = {10.1186/S13040-022-00306-W},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/NascimbenRCV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NezhadZF22,
author = {Sana Nazari Nezhad and
Mohammad H. Zahedi and
Elham Farahani},
title = {Detecting diseases in medical prescriptions using data mining methods},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00314-w},
doi = {10.1186/S13040-022-00314-W},
timestamp = {Tue, 25 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/NezhadZF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NicholsonHG22,
author = {David N. Nicholson and
Daniel S. Himmelstein and
Casey S. Greene},
title = {Expanding a database-derived biomedical knowledge graph via multi-relation
extraction from biomedical abstracts},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00311-z},
doi = {10.1186/S13040-022-00311-Z},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/NicholsonHG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RomeroDMJSMM22,
author = {Roland Albert A. Romero and
Mariefel Nicole Y. Deypalan and
Suchit Mehrotra and
John Titus Jungao and
Natalie E. Sheils and
Elisabetta Manduchi and
Jason H. Moore},
title = {Benchmarking AutoML frameworks for disease prediction using medical
claims},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00300-2},
doi = {10.1186/S13040-022-00300-2},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/RomeroDMJSMM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SafiVAMFB22,
author = {Zeineb Safi and
Neethu Venugopal and
Haytham Ali and
Michel Makhlouf and
Faisal Farooq and
Sabri Boughorbel},
title = {Analysis of risk factors progression of preterm delivery using electronic
health records},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00298-7},
doi = {10.1186/S13040-022-00298-7},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SafiVAMFB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SarojYSC22,
author = {Rakesh Kumar Saroj and
Pawan Kumar Yadav and
Rajneesh Singh and
Obvious N. Chilyabanyama},
title = {Machine Learning Algorithms for understanding the determinants of
under-five Mortality},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00308-8},
doi = {10.1186/S13040-022-00308-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SarojYSC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SimonsSGSSSBW22,
author = {Colinda C. J. M. Simons and
Leo J. Schouten and
Roger W. L. Godschalk and
Frederik{-}Jan van Schooten and
Monika Stoll and
Kristel Van Steen and
Piet A. van den Brandt and
Matty P. Weijenberg},
title = {Polymorphisms in the mTOR-PI3K-Akt pathway, energy balance-related
exposures and colorectal cancer risk in the Netherlands Cohort Study},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-021-00286-3},
doi = {10.1186/S13040-021-00286-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SimonsSGSSSBW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/VadnaisMO22,
author = {David Vadnais and
Michael Middleton and
Oluwatosin Oluwadare},
title = {ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome
3D structure prediction from Hi-C data},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00305-x},
doi = {10.1186/S13040-022-00305-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/VadnaisMO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WellingerA22,
author = {Ralf E. Wellinger and
Jes{\'{u}}s S. Aguilar{-}Ruiz},
title = {A new challenge for data analytics: transposons},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00294-x},
doi = {10.1186/S13040-022-00294-X},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/WellingerA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WoodwardTGMAMU22,
author = {Alexa A. Woodward and
Deanne M. Taylor and
Elizabeth Goldmuntz and
Laura E. Mitchell and
A. J. Agopian and
Jason H. Moore and
Ryan J. Urbanowicz},
title = {Gene-Interaction-Sensitive enrichment analysis in congenital heart
disease},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00287-w},
doi = {10.1186/S13040-022-00287-W},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WoodwardTGMAMU22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YangBCS22,
author = {Bin Yang and
Wenzheng Bao and
Baitong Chen and
Dan Song},
title = {Single{\_}cell{\_}GRN: gene regulatory network identification based
on supervised learning method and Single-cell RNA-seq data},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00297-8},
doi = {10.1186/S13040-022-00297-8},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/YangBCS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YinX22,
author = {Zong{-}Xian Yin and
Hong{-}Ming Xu},
title = {An unsupervised image segmentation algorithm for coronary angiography},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00313-x},
doi = {10.1186/S13040-022-00313-X},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/YinX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZengCY22,
author = {Ying Zeng and
Yuan Chen and
Zheming Yuan},
title = {iSuc-ChiDT: a computational method for identifying succinylation sites
using statistical difference table encoding and the chi-square decision
table classifier},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00290-1},
doi = {10.1186/S13040-022-00290-1},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ZengCY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZengTLHG22,
author = {Zhixuan Zeng and
Xianming Tang and
Yang Liu and
Zhengkun He and
Xun Gong},
title = {Interpretable recurrent neural network models for dynamic prediction
of the extubation failure risk in patients with invasive mechanical
ventilation in the intensive care unit},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00309-7},
doi = {10.1186/S13040-022-00309-7},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZengTLHG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AbegazLJCBDGWHS21,
author = {Fentaw Abegaz and
Fran{\c{c}}ois Van Lishout and
Jestinah M. Mahachie John and
Kridsadakorn Chaichoompu and
Archana Bhardwaj and
Diane Duroux and
Elena S. Gusareva and
Zhi Wei and
Hakon Hakonarson and
Kristel Van Steen},
title = {Performance of model-based multifactor dimensionality reduction methods
for epistasis detection by controlling population structure},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {16},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00247-w},
doi = {10.1186/S13040-021-00247-W},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AbegazLJCBDGWHS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AnMY21,
author = {Ji{-}Yong An and
Fanrong Meng and
Zi{-}Ji Yan},
title = {An efficient computational method for predicting drug-target interactions
using weighted extreme learning machine and speed up robot features},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {3},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00242-1},
doi = {10.1186/S13040-021-00242-1},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AnMY21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BeineckeH21,
author = {Jacqueline Michelle Beinecke and
Dominik Heider},
title = {Gaussian noise up-sampling is better suited than {SMOTE} and {ADASYN}
for clinical decision making},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00283-6},
doi = {10.1186/S13040-021-00283-6},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/BeineckeH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BeloualiGSYAADR21,
author = {Anas Belouali and
Samir Gupta and
Vaibhav Sourirajan and
Jiawei Yu and
Nathaniel Allen and
Adil Alaoui and
Mary Ann Dutton and
Matthew J. Reinhard},
title = {Acoustic and language analysis of speech for suicidal ideation among
{US} veterans},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {11},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00245-y},
doi = {10.1186/S13040-021-00245-Y},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BeloualiGSYAADR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CantorSRG21,
author = {Erika Cantor and
Rodrigo Salas and
Harvey Rosas and
Sandra Guauque{-}Olarte},
title = {Biological knowledge-slanted random forest approach for the classification
of calcified aortic valve stenosis},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00269-4},
doi = {10.1186/S13040-021-00269-4},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/CantorSRG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoO21,
author = {Davide Chicco and
Luca Oneto},
title = {Data analytics and clinical feature ranking of medical records of
patients with sepsis},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {12},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00235-0},
doi = {10.1186/S13040-021-00235-0},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoTJ21,
author = {Davide Chicco and
Niklas T{\"{o}}tsch and
Giuseppe Jurman},
title = {The Matthews correlation coefficient {(MCC)} is more reliable than
balanced accuracy, bookmaker informedness, and markedness in two-class
confusion matrix evaluation},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {13},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00244-z},
doi = {10.1186/S13040-021-00244-Z},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoTJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChrismanPSTJWVS21,
author = {Brianna Sierra Chrisman and
Kelley M. Paskov and
Nate Tyler Stockham and
Kevin Tabatabaei and
Jae{-}Yoon Jung and
Peter Washington and
Maya Varma and
Min Woo Sun and
Sepideh Maleki and
Dennis P. Wall},
title = {Indels in SARS-CoV-2 occur at template-switching hotspots},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {20},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00251-0},
doi = {10.1186/S13040-021-00251-0},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChrismanPSTJWVS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChungHHCCLCCCYC21,
author = {Chih{-}Wei Chung and
Tzu{-}Hung Hsiao and
Chih{-}Jen Huang and
Yen{-}Ju Chen and
Hsin{-}Hua Chen and
Ching{-}Heng Lin and
Seng{-}Cho Chou and
Tzer{-}Shyong Chen and
Yu{-}Fang Chung and
Hwai{-}I Yang and
Yi{-}Ming Chen},
title = {Machine learning approaches for the genomic prediction of rheumatoid
arthritis and systemic lupus erythematosus},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00284-5},
doi = {10.1186/S13040-021-00284-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChungHHCCLCCCYC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ConstantinoCV21,
author = {Cl{\'{a}}udia S. Constantino and
Alexandra M. Carvalho and
Susana Vinga},
title = {Coupling sparse Cox models with clustering of longitudinal transcriptomics
data for trauma prognosis},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {25},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00257-8},
doi = {10.1186/S13040-021-00257-8},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ConstantinoCV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DrivasLR21,
author = {Theodore G. Drivas and
Anastasia Lucas and
Marylyn D. Ritchie},
title = {eQTpLot: a user-friendly {R} package for the visualization of colocalization
between eQTL and {GWAS} signals},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00267-6},
doi = {10.1186/S13040-021-00267-6},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DrivasLR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Ensenyat-Mendez21,
author = {Miquel Ensenyat{-}Mendez and
Sandra {\'{I}}{\~{n}}iguez{-}Mu{\~{n}}oz and
Borja Ses{\'{e}} and
Diego M. Marzese},
title = {Correction to: iGlioSub: an integrative transcriptomic and epigenomic
classifier for glioblastoma molecular subtypes},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00282-7},
doi = {10.1186/S13040-021-00282-7},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/Ensenyat-Mendez21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Ensenyat-Mendez21a,
author = {Miquel Ensenyat{-}Mendez and
Sandra {\'{I}}{\~{n}}iguez{-}Mu{\~{n}}oz and
Borja Ses{\'{e}} and
Diego M. Marzese},
title = {iGlioSub: an integrative transcriptomic and epigenomic classifier
for glioblastoma molecular subtypes},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00273-8},
doi = {10.1186/S13040-021-00273-8},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Ensenyat-Mendez21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FadjaRBT21,
author = {Arnaud Nguembang Fadja and
Fabrizio Riguzzi and
Giorgio Bertorelle and
Emiliano Trucchi},
title = {Identification of natural selection in genomic data with deep convolutional
neural network},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00280-9},
doi = {10.1186/S13040-021-00280-9},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/FadjaRBT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FanZZYZHYXLL21,
author = {Shuanglong Fan and
Zhiqiang Zhao and
Yanbo Zhang and
Hongmei Yu and
ChuChu Zheng and
XueQian Huang and
Zhenhuan Yang and
Meng Xing and
Qing Lu and
Yanhong Luo},
title = {Probability calibration-based prediction of recurrence rate in patients
with diffuse large B-cell lymphoma},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00272-9},
doi = {10.1186/S13040-021-00272-9},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FanZZYZHYXLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GiangrecoT21,
author = {Nicholas Giangreco and
Nicholas P. Tatonetti},
title = {Evaluating risk detection methods to uncover ontogenic-mediated adverse
drug effect mechanisms in children},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00264-9},
doi = {10.1186/S13040-021-00264-9},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GiangrecoT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GlavaskiV21,
author = {Mila Glavaski and
Lazar U. Velicki},
title = {Humans and machines in biomedical knowledge curation: hypertrophic
cardiomyopathy molecular mechanisms' representation},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00279-2},
doi = {10.1186/S13040-021-00279-2},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GlavaskiV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HarikumarQRGV21,
author = {Haripriya Harikumar and
Thomas P. Quinn and
Santu Rana and
Sunil Gupta and
Svetha Venkatesh},
title = {Personalized single-cell networks: a framework to predict the response
of any gene to any drug for any patient},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00263-w},
doi = {10.1186/S13040-021-00263-W},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/HarikumarQRGV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HeZCH21,
author = {Hao He and
Yatong Zhou and
Yue Chi and
Jingfei He},
title = {Prediction of MoRFs based on sequence properties and convolutional
neural networks},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00275-6},
doi = {10.1186/S13040-021-00275-6},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/HeZCH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JainSHBBKSJ21,
author = {Sankalp Jain and
Amit Saxena and
Suprit Hesarur and
Kirti Bhadhadhara and
Neeraj Bharti and
Sunitha Manjari Kasibhatla and
Uddhavesh Sonavane and
Rajendra Joshi},
title = {GenoVault: a cloud based genomics repository},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00268-5},
doi = {10.1186/S13040-021-00268-5},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/JainSHBBKSJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeeL21,
author = {Geonseok Lee and
Kichun Lee},
title = {Feature selection using distributions of orthogonal {PLS} regression
vectors in spectral data},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {7},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00240-3},
doi = {10.1186/S13040-021-00240-3},
timestamp = {Thu, 01 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LeeL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeeL21a,
author = {Jung Wun Lee and
Seungyeoun Lee},
title = {A comparative study on the unified model based multifactor dimensionality
reduction methods for identifying gene-gene interactions associated
with the survival phenotype},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {17},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00248-9},
doi = {10.1186/S13040-021-00248-9},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LeeL21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LewisNLA21,
author = {Scott Lewis and
Andrea Nash and
Qinghong Li and
Tae{-}Hyuk Ahn},
title = {Comparison of 16S and whole genome dog microbiomes using machine learning},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00270-x},
doi = {10.1186/S13040-021-00270-X},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LewisNLA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MaM21,
author = {Jun Ma and
Alison A. Motsinger{-}Reif},
title = {Prediction of synergistic drug combinations using PCA-initialized
deep learning},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00278-3},
doi = {10.1186/S13040-021-00278-3},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/MaM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Moore21,
author = {Jason H. Moore},
title = {Empowering the data science scientist},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {8},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00246-x},
doi = {10.1186/S13040-021-00246-X},
timestamp = {Thu, 06 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Moore21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MooreTRNW21,
author = {Jason H. Moore and
Van Q. Truong and
Ashley B. Robbins and
David Nicholson and
Clar Lynda Williams{-}Devane},
title = {Ten important roles for academic leaders to promote equity, diversity,
and inclusion in data science},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {22},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00256-9},
doi = {10.1186/S13040-021-00256-9},
timestamp = {Thu, 06 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MooreTRNW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MoosaAB21,
author = {Shabir Moosa and
Abbes Amira and
Sabri Boughorbel},
title = {{DASSI:} differential architecture search for splice identification
from {DNA} sequences},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {15},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00237-y},
doi = {10.1186/S13040-021-00237-Y},
timestamp = {Thu, 06 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MoosaAB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MoroM21,
author = {Gianluca Moro and
Marco Masseroli},
title = {Gene function finding through cross-organism ensemble learning},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {14},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00239-w},
doi = {10.1186/S13040-021-00239-W},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MoroM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OrlenkoM21,
author = {Alena Orlenko and
Jason H. Moore},
title = {A comparison of methods for interpreting random forest models of genetic
association in the presence of non-additive interactions},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {9},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00243-0},
doi = {10.1186/S13040-021-00243-0},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/OrlenkoM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PaskovJCSWVSW21,
author = {Kelley M. Paskov and
Jae{-}Yoon Jung and
Brianna Sierra Chrisman and
Nate Tyler Stockham and
Peter Washington and
Maya Varma and
Min Woo Sun and
Dennis P. Wall},
title = {Estimating sequencing error rates using families},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {27},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00259-6},
doi = {10.1186/S13040-021-00259-6},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PaskovJCSWVSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PegoraroLWSGB21,
author = {Juliana Alves Pegoraro and
Sophie Lavault and
Nicolas Wattiez and
Thomas Similowski and
J{\'{e}}sus Gonzalez{-}Bermejo and
Etienne Birmel{\'{e}}},
title = {Machine-learning based feature selection for a non-invasive breathing
change detection},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00265-8},
doi = {10.1186/S13040-021-00265-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PegoraroLWSGB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PengYSGZ21,
author = {Lihong Peng and
Ruya Yuan and
Ling Shen and
Pengfei Gao and
Liqian Zhou},
title = {LPI-EnEDT: an ensemble framework with extra tree and decision tree
classifiers for imbalanced lncRNA-protein interaction data classification},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00277-4},
doi = {10.1186/S13040-021-00277-4},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PengYSGZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PetrazziniNLVS21,
author = {Ben Omega Petrazzini and
Hugo Naya and
Fernando Lopez{-}Bello and
Gustavo E. Vazquez and
Luc{\'{\i}}a Spangenberg},
title = {Evaluation of different approaches for missing data imputation on
features associated to genomic data},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00274-7},
doi = {10.1186/S13040-021-00274-7},
timestamp = {Thu, 05 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PetrazziniNLVS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PolakaRPL21,
author = {Inese Polaka and
Danute Razuka{-}Ebela and
Jin Young Park and
Marcis Leja},
title = {Taxonomy-based data representation for data mining: an example of
the magnitude of risk associated with H. pylori infection},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00271-w},
doi = {10.1186/S13040-021-00271-W},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PolakaRPL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/QiuLLQYCL21,
author = {Peng Qiu and
Yixuan Li and
Kai Liu and
Jinbao Qin and
Kaichuang Ye and
Tao Chen and
Xinwu Lu},
title = {Prescreening and treatment of aortic dissection through an analysis
of infinite-dimension data},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {24},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00249-8},
doi = {10.1186/S13040-021-00249-8},
timestamp = {Mon, 01 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/QiuLLQYCL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RacedoPVSSZ21,
author = {Sebastian Racedo and
Ivan Portnoy and
Jorge I. V{\'{e}}lez and
Homero San{-}Juan{-}Vergara and
Marco E. Sanjuan and
Eduardo E. Zurek},
title = {A new pipeline for structural characterization and classification
of RNA-Seq microbiome data},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00266-7},
doi = {10.1186/S13040-021-00266-7},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/RacedoPVSSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RadhachandranGZ21,
author = {Ashwath Radhachandran and
Anurag Garikipati and
Nicole S. Zelin and
Emily Pellegrini and
Sina Ghandian and
Jacob S. Calvert and
Jana L. Hoffman and
Qingqing Mao and
Ritankar Das},
title = {Prediction of short-term mortality in acute heart failure patients
using minimal electronic health record data},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {23},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00255-w},
doi = {10.1186/S13040-021-00255-W},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RadhachandranGZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RianEHCFLGOPD21,
author = {Kinza Rian and
Marina Esteban{-}Medina and
Marta R. Hidalgo and
Cankut {\c{C}}ubuk and
Matias M. Falco and
Carlos Loucera and
Devrim Gunyel and
Marek Ostaszewski and
Mar{\'{\i}}a Pe{\~{n}}a{-}Chilet and
Joaqu{\'{\i}}n Dopazo},
title = {Mechanistic modeling of the SARS-CoV-2 disease map},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {5},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00234-1},
doi = {10.1186/S13040-021-00234-1},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/RianEHCFLGOPD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SaharanNCSFMK21,
author = {Seema Singh Saharan and
Pankaj Nagar and
Kate Townsend Creasy and
Eveline O. Stock and
James Feng and
Mary J. Malloy and
John P. Kane},
title = {Machine learning and statistical approaches for classification of
risk of coronary artery disease using plasma cytokines},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {26},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00260-z},
doi = {10.1186/S13040-021-00260-Z},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SaharanNCSFMK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SalemAH21,
author = {Saeed Salem and
Mohammed Alokshiya and
Mohammad Al Hasan},
title = {{RASMA:} a reverse search algorithm for mining maximal frequent subgraphs},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {19},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00250-1},
doi = {10.1186/S13040-021-00250-1},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SalemAH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SeiO21,
author = {Yuichi Sei and
Akihiko Ohsuga},
title = {Privacy-preserving chi-squared test of independence for small samples},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {6},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00238-x},
doi = {10.1186/S13040-021-00238-X},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SeiO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SharifiKESHF21,
author = {Mahyar Sharifi and
Toktam Khatibi and
Mohammad Hassan Emamian and
Somayeh Sadat and
Hassan Hashemi and
Akbar Fotouhi},
title = {Development of glaucoma predictive model and risk factors assessment
based on supervised models},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00281-8},
doi = {10.1186/S13040-021-00281-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SharifiKESHF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TohB21,
author = {Christopher Toh and
James P. Brody},
title = {Genetic risk score for ovarian cancer based on chromosomal-scale length
variation},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {18},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00253-y},
doi = {10.1186/S13040-021-00253-Y},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/TohB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/VarmaPCSJSWW21,
author = {Maya Varma and
Kelley M. Paskov and
Brianna Sierra Chrisman and
Min Woo Sun and
Jae{-}Yoon Jung and
Nate Tyler Stockham and
Peter Washington and
Dennis P. Wall},
title = {A maximum flow-based network approach for identification of stable
noncoding biomarkers associated with the multigenic neurological condition,
autism},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00262-x},
doi = {10.1186/S13040-021-00262-X},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/VarmaPCSJSWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WangCTKCA21,
author = {Y. Wang and
Y. M. Chu and
Adel Thaljaoui and
Yousef Ali Khan and
Wathek Chammam and
Syed Zaheer Abbas},
title = {A multi-feature hybrid classification data mining technique for human-emotion},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {21},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00254-x},
doi = {10.1186/S13040-021-00254-X},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WangCTKCA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WangLCLH21,
author = {Zejin Wang and
Jing Liu and
Xi Chen and
Guoqing Li and
Hua Han},
title = {Sparse self-attention aggregation networks for neural sequence slice
interpolation},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {10},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00236-z},
doi = {10.1186/S13040-021-00236-Z},
timestamp = {Fri, 15 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WangLCLH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/XuZXLZZ21,
author = {Congmin Xu and
Man Zhou and
Zhongjie Xie and
Mo Li and
Xi Zhu and
Huaiqiu Zhu},
title = {LightCUD: a program for diagnosing {IBD} based on human gut microbiome
data},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {2},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00241-2},
doi = {10.1186/S13040-021-00241-2},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/XuZXLZZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YanZWYLYZW21,
author = {Qian Yan and
Wenjiang Zheng and
Boqing Wang and
Baoqian Ye and
Huiyan Luo and
Xinqian Yang and
Ping Zhang and
Xiongwen Wang},
title = {A prognostic model based on seven immune-related genes predicts the
overall survival of patients with hepatocellular carcinoma},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00261-y},
doi = {10.1186/S13040-021-00261-Y},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/YanZWYLYZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZengYZG21,
author = {Zhixuan Zeng and
Shuo Yao and
Jianfei Zheng and
Xun Gong},
title = {Development and validation of a novel blending machine learning model
for hospital mortality prediction in {ICU} patients with Sepsis},
journal = {BioData Min.},
volume = {14},
number = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00276-5},
doi = {10.1186/S13040-021-00276-5},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZengYZG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangWLZYHAW21,
author = {Meng{-}Meng Zhang and
Dan Wang and
Feng Lu and
Rong Zhao and
Xun Ye and
Lin He and
Li Ai and
Chun{-}Jie Wu},
title = {Identification of the active substances and mechanisms of ginger for
the treatment of colon cancer based on network pharmacology and molecular
docking},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {1},
year = {2021},
url = {https://doi.org/10.1186/s13040-020-00232-9},
doi = {10.1186/S13040-020-00232-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangWLZYHAW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZohnerM21,
author = {Ye Emma Zohner and
Jeffrey S. Morris},
title = {{COVID-TRACK:} world and {USA} {SARS-COV-2} testing and {COVID-19}
tracking},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {4},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00233-2},
doi = {10.1186/S13040-021-00233-2},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZohnerM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AbbasiYHAM20,
author = {Wajid Arshad Abbasi and
Adiba Yaseen and
Fahad Ul Hassan and
Saiqa Andleeb and
Fayyaz ul Amir Afsar Minhas},
title = {{ISLAND:} in-silico proteins binding affinity prediction using sequence
information},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {20},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00231-w},
doi = {10.1186/S13040-020-00231-W},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AbbasiYHAM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChenHZTYF20,
author = {Dan Chen and
Jun Hu and
Mei Zhu and
Niansheng Tang and
Yang Yang and
Yuran Feng},
title = {Diagnosis of thyroid nodules for ultrasonographic characteristics
indicative of malignancy using random forest},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {14},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00223-w},
doi = {10.1186/S13040-020-00223-W},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChenHZTYF20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FajardaDSO20,
author = {Olga Fajarda and
Sara Duarte{-}Pereira and
Raquel M. Silva and
Jos{\'{e}} Lu{\'{\i}}s Oliveira},
title = {Merging microarray studies to identify a common gene expression signature
to several structural heart diseases},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {8},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00217-8},
doi = {10.1186/S13040-020-00217-8},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FajardaDSO20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GaoSS20,
author = {Kai Gao and
Yan{-}Ping Song and
Anna Song},
title = {Exploring active ingredients and function mechanisms of Ephedra-bitter
almond for prevention and treatment of Corona virus disease 2019 {(COVID-19)}
based on network pharmacology},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {19},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00229-4},
doi = {10.1186/S13040-020-00229-4},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GaoSS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GuoWWZCL20,
author = {Long{-}Yi Guo and
Aihua Wu and
Yong{-}xia Wang and
Li{-}Ping Zhang and
Hua Chai and
Xue{-}Fang Liang},
title = {Deep learning-based ovarian cancer subtypes identification using multi-omics
data},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {10},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00222-x},
doi = {10.1186/S13040-020-00222-X},
timestamp = {Fri, 12 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/GuoWWZCL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuWWZJQXZPM20,
author = {Qichao Hu and
Shizhang Wei and
Jianxia Wen and
Wenwen Zhang and
Yinxiao Jiang and
Caiyan Qu and
Junbao Xiang and
Yanling Zhao and
Xi Peng and
Xiao Ma},
title = {Network pharmacology reveals the multiple mechanisms of Xiaochaihu
decoction in the treatment of non-alcoholic fatty liver disease},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {11},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00224-9},
doi = {10.1186/S13040-020-00224-9},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HuWWZJQXZPM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuangZNLCLTL20,
author = {Ying Huang and
Wen{-}jiang Zheng and
Yong{-}shi Ni and
Mian{-}sha Li and
Jian{-}kun Chen and
Xiaohong Liu and
Xinghua Tan and
Ji{-}Qiang Li},
title = {Therapeutic mechanism of Toujie Quwen granules in {COVID-19} based
on network pharmacology},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {15},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00225-8},
doi = {10.1186/S13040-020-00225-8},
timestamp = {Thu, 09 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/HuangZNLCLTL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JianSZX20,
author = {Gong{-}hui Jian and
Bing{-}zhu Su and
Wen{-}jia Zhou and
Hui Xiong},
title = {Application of network pharmacology and molecular docking to elucidate
the potential mechanism of Eucommia ulmoides-Radix Achyranthis Bidentatae
against osteoarthritis},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {12},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00221-y},
doi = {10.1186/S13040-020-00221-Y},
timestamp = {Thu, 02 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/JianSZX20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeeIGDBAD20,
author = {Hao{-}Chih Lee and
Osamu Ichikawa and
Benjamin S. Glicksberg and
Aparna A. Divaraniya and
Christine E. Becker and
Pankaj Agarwal and
Joel T. Dudley},
title = {Identification of therapeutic targets from genetic association studies
using hierarchical component analysis},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {6},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00216-9},
doi = {10.1186/S13040-020-00216-9},
timestamp = {Tue, 13 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LeeIGDBAD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiLBSLW20,
author = {Shiyan Li and
Hongxin Liu and
Shiyu Bian and
Xianzheng Sha and
Yixue Li and
Yin Wang},
title = {The accelerated aging model reveals critical mechanisms of late-onset
Parkinson's disease},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {4},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00215-w},
doi = {10.1186/S13040-020-00215-W},
timestamp = {Tue, 13 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiLBSLW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiuSL20,
author = {Tao Liu and
Kaiwen Shi and
Wuju Li},
title = {Deep learning methods improve linear B-cell epitope prediction},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {1},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00211-0},
doi = {10.1186/S13040-020-00211-0},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LiuSL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MaganaCKRGZMESL20,
author = {J. Maga{\~{n}}a and
M. G. Contreras and
Kevin L. Keys and
O. Risse{-}Adams and
P. C. Goddard and
A. M. Zeiger and
Angel C. Y. Mak and
J. R. Elhawary and
L. A. Samedy{-}Bates and
E. Lee and
N. Thakur and
Donglei Hu and
Celeste Eng and
S. Salazar and
Scott Huntsman and
T. Hu and
Esteban Gonz{\`{a}}lez Burchard and
M. J. White},
title = {An epistatic interaction between pre-natal smoke exposure and socioeconomic
status has a significant impact on bronchodilator drug response in
African American youth with asthma},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {7},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00218-7},
doi = {10.1186/S13040-020-00218-7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MaganaCKRGZMESL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MalinkaZK20,
author = {Frantisek Malinka and
Filip Zelezn{\'{y}} and
Jir{\'{\i}} Kl{\'{e}}ma},
title = {Finding semantic patterns in omics data using concept rule learning
with an ontology-based refinement operator},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {13},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00219-6},
doi = {10.1186/S13040-020-00219-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MalinkaZK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Moore20,
author = {Jason H. Moore},
title = {Ten important roles for academic leaders in data science},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {18},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00228-5},
doi = {10.1186/S13040-020-00228-5},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Moore20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MooreBBCDGHHHKM20,
author = {Jason H. Moore and
Ian Barnett and
Mary Regina Boland and
Yong Chen and
George Demiris and
Graciela Gonzalez{-}Hernandez and
Daniel S. Herman and
Blanca E. Himes and
Rebecca A. Hubbard and
Dokyoon Kim and
Jeffrey S. Morris and
Danielle L. Mowery and
Marylyn D. Ritchie and
Li Shen and
Ryan J. Urbanowicz and
John H. Holmes},
title = {Ideas for how informaticians can get involved with {COVID-19} research},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {3},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00213-y},
doi = {10.1186/S13040-020-00213-Y},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MooreBBCDGHHHKM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SipperM20,
author = {Moshe Sipper and
Jason H. Moore},
title = {Conservation machine learning},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {9},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00220-z},
doi = {10.1186/S13040-020-00220-Z},
timestamp = {Fri, 13 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SipperM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ThangarajKLET20,
author = {Phyllis M. Thangaraj and
Benjamin Kummer and
Tal Lorberbaum and
Mitchell S. V. Elkind and
Nicholas P. Tatonetti},
title = {Comparative analysis, applications, and interpretation of electronic
health record-based stroke phenotyping methods},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {21},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00230-x},
doi = {10.1186/S13040-020-00230-X},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ThangarajKLET20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YeganehRSLM20,
author = {Pourya Naderi Yeganeh and
Chrsitine Richardson and
Erik Saule and
Ann Loraine and
M. Taghi Mostafavi},
title = {Revisiting the use of graph centrality models in biological pathway
analysis},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {5},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00214-x},
doi = {10.1186/S13040-020-00214-X},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/YeganehRSLM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YouLCWHLGZLQ20,
author = {Jie{-}shu You and
Chen{-}yue Li and
Wei Chen and
Xia{-}lin Wu and
Li{-}jie Huang and
Ren{-}kai Li and
Fei Gao and
Ming{-}yue Zhang and
Huan{-}lan Liu and
Wei{-}ling Qu},
title = {A network pharmacology-based study on Alzheimer disease prevention
and treatment of Qiong Yu Gao},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {2},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00212-z},
doi = {10.1186/S13040-020-00212-Z},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/YouLCWHLGZLQ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhengYNZYZLJ20,
author = {Wen{-}jiang Zheng and
Qian Yan and
Yong{-}shi Ni and
Shao{-}feng Zhan and
Liu{-}liu Yang and
Hong{-}Fa Zhuang and
Xiaohong Liu and
Yong Jiang},
title = {Examining the effector mechanisms of Xuebijing injection on {COVID-19}
based on network pharmacology},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {17},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00227-6},
doi = {10.1186/S13040-020-00227-6},
timestamp = {Fri, 29 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhengYNZYZLJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhouVLLMKGH20,
author = {Jie Zhou and
Weston D. Viles and
Boran Lu and
Zhigang Li and
Juliette C. Madan and
Margaret R. Karagas and
Jiang Gui and
Anne Gatewood Hoen},
title = {Identification of microbial interaction network: zero-inflated latent
Ising model based approach},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {16},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00226-7},
doi = {10.1186/S13040-020-00226-7},
timestamp = {Mon, 08 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhouVLLMKGH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BiTQYMGS19,
author = {Jia{-}Hao Bi and
Yi{-}Fan Tong and
Zhe{-}Wei Qiu and
Xing{-}Feng Yang and
John D. Minna and
Adi F. Gazdar and
Kai Song},
title = {ClickGene: an open cloud-based platform for big pan-cancer data genome-wide
association study, visualization and exploration},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {12:1--12:15},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0202-3},
doi = {10.1186/S13040-019-0202-3},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BiTQYMGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BittrichKLKVL19,
author = {Sebastian Bittrich and
Marika Kaden and
Christoph Leberecht and
Florian Kaiser and
Thomas Villmann and
Dirk Labudde},
title = {Application of an interpretable classification model on Early Folding
Residues during protein folding},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {1:1--1:16},
year = {2019},
url = {https://doi.org/10.1186/s13040-018-0188-2},
doi = {10.1186/S13040-018-0188-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BittrichKLKVL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BolandALGG19,
author = {Mary Regina Boland and
Snigdha Alur{-}Gupta and
Lisa Levine and
Peter Gabriel and
Graciela Gonzalez{-}Hernandez},
title = {Disease associations depend on visit type: results from a visit-wide
association study},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {15:1--15:10},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0203-2},
doi = {10.1186/S13040-019-0203-2},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/BolandALGG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BrionneJH19,
author = {Aur{\'{e}}lien Brionne and
Am{\'{e}}lie Juanchich and
Christelle Hennequet{-}Antier},
title = {ViSEAGO: a Bioconductor package for clustering biological functions
using Gene Ontology and semantic similarity},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {16:1--16:13},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0204-1},
doi = {10.1186/S13040-019-0204-1},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BrionneJH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/EllisWGM19,
author = {Randall J. Ellis and
Zichen Wang and
Nicholas Genes and
Avi Ma'ayan},
title = {Predicting opioid dependence from electronic health records with machine
learning},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {3:1--3:19},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0193-0},
doi = {10.1186/S13040-019-0193-0},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/EllisWGM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JeanquartierJH19,
author = {Fleur Jeanquartier and
Claire Jean{-}Quartier and
Andreas Holzinger},
title = {Use case driven evaluation of open databases for pediatric cancer
research},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {2:1--2:20},
year = {2019},
url = {https://doi.org/10.1186/s13040-018-0190-8},
doi = {10.1186/S13040-018-0190-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/JeanquartierJH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JoiretJGS19,
author = {Marc Joiret and
Jestinah M. Mahachie John and
Elena S. Gusareva and
Kristel Van Steen},
title = {Confounding of linkage disequilibrium patterns in large scale {DNA}
based gene-gene interaction studies},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {11:1--11:23},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0199-7},
doi = {10.1186/S13040-019-0199-7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/JoiretJGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeiZ19,
author = {Xiujuan Lei and
Cheng Zhang},
title = {Predicting metabolite-disease associations based on {KATZ} model},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {19:1--19:14},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0206-z},
doi = {10.1186/S13040-019-0206-Z},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LeiZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MaHWZZW19,
author = {Bidong Ma and
Zhiyou Huang and
Qian Wang and
Jizhou Zhang and
Bin Zhou and
Jiaohong Wu},
title = {Integrative analysis of genetic and epigenetic profiling of lung squamous
cell carcinoma {(LSCC)} patients to identify smoking level relevant
biomarkers},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {18:1--18:18},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0207-y},
doi = {10.1186/S13040-019-0207-Y},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MaHWZZW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ManduchiORM19,
author = {Elisabetta Manduchi and
Patryk Orzechowski and
Marylyn D. Ritchie and
Jason H. Moore},
title = {Exploration of a diversity of computational and statistical measures
of association for genome-wide genetic studies},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {14:1--14:16},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0201-4},
doi = {10.1186/S13040-019-0201-4},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ManduchiORM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MillerVR19,
author = {Jason E. Miller and
Yogasudha Veturi and
Marylyn D. Ritchie},
title = {Innovative strategies for annotating the "relationSNP" between variants
and molecular phenotypes},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {10:1--10:22},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0197-9},
doi = {10.1186/S13040-019-0197-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MillerVR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NetoTRAFC19,
author = {Habib Asseiss Neto and
Wanessa L. F. Tavares and
Daniela C. S. Z. Ribeiro and
Ronnie Cley de Oliveira Alves and
Leorges M. Fonseca and
S{\'{e}}rgio Vale Aguiar Campos},
title = {On the utilization of deep and ensemble learning to detect milk adulteration},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {13:1--13:13},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0200-5},
doi = {10.1186/S13040-019-0200-5},
timestamp = {Sun, 23 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/NetoTRAFC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ParkKRJL19,
author = {Youngja Park and
Taewoon Kong and
James R. Roede and
Dean P. Jones and
Kichun Lee},
title = {A biplot correlation range for group-wise metabolite selection in
mass spectrometry},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {4:1--4:24},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0191-2},
doi = {10.1186/S13040-019-0191-2},
timestamp = {Thu, 01 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ParkKRJL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RubanovZSSZL19,
author = {Lev I. Rubanov and
Andrey G. Zaraisky and
Gregory A. Shilovsky and
Alexander V. Seliverstov and
Oleg A. Zverkov and
Vassily A. Lyubetsky},
title = {Screening for mouse genes lost in mammals with long lifespans},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {20:1--20:18},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0208-x},
doi = {10.1186/S13040-019-0208-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RubanovZSSZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SavelK19,
author = {Daniel M. Savel and
Mehmet Koyut{\"{u}}rk},
title = {Characterizing human genomic coevolution in locus-gene regulatory
interactions},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {8:1--8:15},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0195-y},
doi = {10.1186/S13040-019-0195-Y},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SavelK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SipperFAM19,
author = {Moshe Sipper and
Weixuan Fu and
Karuna Ahuja and
Jason H. Moore},
title = {Correction to: Investigating the parameter space of evolutionary algorithms},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {22:1},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0210-3},
doi = {10.1186/S13040-019-0210-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SipperFAM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SpanigH19,
author = {Sebastian Sp{\"{a}}nig and
Dominik Heider},
title = {Encodings and models for antimicrobial peptide classification for
multi-resistant pathogens},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {7:1--7:29},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0196-x},
doi = {10.1186/S13040-019-0196-X},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SpanigH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SunS19,
author = {Lillian Sun and
Shuying Sun},
title = {Within-sample co-methylation patterns in normal tissues},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {9:1--9:22},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0198-8},
doi = {10.1186/S13040-019-0198-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SunS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangLZZM19,
author = {Yunkui Zhang and
Yaochen Li and
Rongsheng Zhang and
Yujie Zhang and
Haitao Ma},
title = {{RNSCLC-PRSP} software to predict the prognostic risk and survival
in patients with resected {T1-3N0-2} {M0} non-small cell lung cancer},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {17:1--17:14},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0205-0},
doi = {10.1186/S13040-019-0205-0},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangLZZM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhouLZLHLCLHT19,
author = {Yanqiu Zhou and
Chen Liu and
Rongfang Zhou and
Anzhi Lu and
Biao Huang and
Liling Liu and
Ling Chen and
Bei Luo and
Jin Huang and
Zhijian Tian},
title = {SEQdata-BEACON: a comprehensive database of sequencing performance
and statistical tools for performance evaluation and yield simulation
in {BGISEQ-500}},
journal = {BioData Min.},
volume = {12},
number = {1},
pages = {21:1--21:14},
year = {2019},
url = {https://doi.org/10.1186/s13040-019-0209-9},
doi = {10.1186/S13040-019-0209-9},
timestamp = {Thu, 03 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhouLZLHLCLHT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Al-AjlanA18,
author = {Amani Al{-}Ajlan and
Achraf El Allali},
title = {Feature selection for gene prediction in metagenomic fragments},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {9:1--9:12},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0170-z},
doi = {10.1186/S13040-018-0170-Z},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/Al-AjlanA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ArabnejadDBWHM18,
author = {M. Arabnejad and
Bryan A. Dawkins and
William S. Bush and
Bill C. White and
A. R. Harkness and
Brett A. McKinney},
title = {Transition-transversion encoding and genetic relationship metric in
ReliefF feature selection improves pathway enrichment in {GWAS}},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {23:1--23:17},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0186-4},
doi = {10.1186/S13040-018-0186-4},
timestamp = {Tue, 13 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ArabnejadDBWHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BouzagloCT18,
author = {David Bouzaglo and
Israel Chasida and
Elishai Ezra Tsur},
title = {Distributed retrieval engine for the development of cloud-deployed
biological databases},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {26:1--26:10},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0185-5},
doi = {10.1186/S13040-018-0185-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BouzagloCT18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BresterKTVRRSK18,
author = {Christina Brester and
Jussi Kauhanen and
Tomi{-}Pekka Tuomainen and
Sari Voutilainen and
Mauno R{\"{o}}nkk{\"{o}} and
Kimmo Ronkainen and
Eugene Semenkin and
Mikko Kolehmainen},
title = {Evolutionary methods for variable selection in the epidemiological
modeling of cardiovascular diseases},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {18:1--18:14},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0180-x},
doi = {10.1186/S13040-018-0180-X},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BresterKTVRRSK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CappelliFW18,
author = {Eleonora Cappelli and
Giovanni Felici and
Emanuel Weitschek},
title = {Combining {DNA} methylation and {RNA} sequencing data of cancer for
supervised knowledge extraction},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {22:1--22:23},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0184-6},
doi = {10.1186/S13040-018-0184-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CappelliFW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CarrasquinhaVLV18,
author = {Eunice Carrasquinha and
Andr{\'{e}} Ver{\'{\i}}ssimo and
Marta B. Lopes and
Susana Vinga},
title = {Identification of influential observations in high-dimensional cancer
survival data through the rank product test},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {1:1--1:14},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0162-z},
doi = {10.1186/S13040-018-0162-Z},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/CarrasquinhaVLV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChenTWDHG18,
author = {Kathleen M. Chen and
Jie Tan and
Gregory P. Way and
Georgia Doing and
Deborah A. Hogan and
Casey S. Greene},
title = {PathCORE-T: identifying and visualizing globally co-occurring pathways
in large transcriptomic compendia},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {14:1--14:20},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0175-7},
doi = {10.1186/S13040-018-0175-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChenTWDHG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DorpinghausSJ18,
author = {Jens D{\"{o}}rpinghaus and
Sebastian Schaaf and
Marc Jacobs},
title = {Soft document clustering using a novel graph covering approach},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {11:1--11:20},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0172-x},
doi = {10.1186/S13040-018-0172-X},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DorpinghausSJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/EfimovaTPVADOKL18,
author = {Daria Efimova and
Alexander V. Tyakht and
Anna S. Popenko and
Anatoly N. Vasilyev and
Ilya A. Altukhov and
Nikita V. Dovidchenko and
Vera Odintsova and
Natalya Klimenko and
Robert Loshkarev and
Maria Pashkova and
Anna Elizarova and
Viktoriya Voroshilova and
Sergei Slavskii and
Yury Pekov and
Ekaterina Filippova and
Tatiana Shashkova and
Evgenii Levin and
Dmitry G. Alexeev},
title = {Knomics-Biota - a system for exploratory analysis of human gut microbiota
data},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {25:1--25:7},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0187-3},
doi = {10.1186/S13040-018-0187-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/EfimovaTPVADOKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FerreroA18,
author = {Enrico Ferrero and
Pankaj Agarwal},
title = {Connecting genetics and gene expression data for target prioritisation
and drug repositioning},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {7:1--7:9},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0171-y},
doi = {10.1186/S13040-018-0171-Y},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FerreroA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Gutierrez-Aviles18,
author = {David Guti{\'{e}}rrez{-}Avil{\'{e}}s and
Ra{\'{u}}l Gir{\'{a}}ldez and
Francisco Javier Gil{-}Cumbreras and
Cristina Rubio{-}Escudero},
title = {{TRIQ:} a new method to evaluate triclusters},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {15:1--15:29},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0177-5},
doi = {10.1186/S13040-018-0177-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Gutierrez-Aviles18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeeSKYP18,
author = {Seungyeoun Lee and
Donghee Son and
Yongkang Kim and
Wenbao Yu and
Taesung Park},
title = {Unified Cox model based multifactor dimensionality reduction method
for gene-gene interaction analysis of the survival phenotype},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {27:1--27:13},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0189-1},
doi = {10.1186/S13040-018-0189-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LeeSKYP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiLDS18,
author = {Catherine Li and
Juyon Lee and
Jessica Ding and
Shuying Sun},
title = {Integrative analysis of gene expression and methylation data for breast
cancer cell lines},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {13:1--13:16},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0174-8},
doi = {10.1186/S13040-018-0174-8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiLDS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiLXDXH18,
author = {Weifu Li and
Jing Liu and
Chi Xiao and
Hao Deng and
Qiwei Xie and
Hua Han},
title = {A fast forward 3D connection algorithm for mitochondria and synapse
segmentations from serial {EM} images},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {24:1--24:15},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0183-7},
doi = {10.1186/S13040-018-0183-7},
timestamp = {Fri, 15 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiLXDXH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MathurRMSM18,
author = {Ravi Mathur and
Daniel M. Rotroff and
Jun Ma and
Ali Shojaie and
Alison A. Motsinger{-}Reif},
title = {Gene set analysis methods: a systematic comparison},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {8:1--8:19},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0166-8},
doi = {10.1186/S13040-018-0166-8},
timestamp = {Mon, 31 Oct 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/MathurRMSM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MrzicMBMCGL18,
author = {Aida Mrzic and
Pieter Meysman and
Wout Bittremieux and
Pieter Moris and
Boris Cule and
Bart Goethals and
Kris Laukens},
title = {Grasping frequent subgraph mining for bioinformatics applications},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {20:1--20:24},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0181-9},
doi = {10.1186/S13040-018-0181-9},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MrzicMBMCGL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NepomucenoTNA18,
author = {Juan A. Nepomuceno and
Alicia Troncoso and
Isabel A. Nepomuceno{-}Chamorro and
Jes{\'{u}}s S. Aguilar{-}Ruiz},
title = {Pairwise gene GO-based measures for biclustering of high-dimensional
expression data},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {4:1--4:19},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0165-9},
doi = {10.1186/S13040-018-0165-9},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/NepomucenoTNA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Parraga-AlavaDI18,
author = {Jorge Parraga{-}Alava and
M{\'{a}}rcio Dorn and
Mario Inostroza{-}Ponta},
title = {A multi-objective gene clustering algorithm guided by apriori biological
knowledge with intensification and diversification strategies},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {16:1--16:22},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0178-4},
doi = {10.1186/S13040-018-0178-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Parraga-AlavaDI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PietteM18,
author = {Elizabeth R. Piette and
Jason H. Moore},
title = {Improving machine learning reproducibility in genetic association
studies with proportional instance cross validation {(PICV)}},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {6:1--6:11},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0167-7},
doi = {10.1186/S13040-018-0167-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PietteM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/QinL18,
author = {Wenyi Qin and
Hui Lu},
title = {A novel joint analysis framework improves identification of differentially
expressed genes in cross disease transcriptomic analysis},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {3:1--3:17},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0163-y},
doi = {10.1186/S13040-018-0163-Y},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/QinL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SipperFAM18,
author = {Moshe Sipper and
Weixuan Fu and
Karuna Ahuja and
Jason H. Moore},
title = {Investigating the parameter space of evolutionary algorithms},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {2:1--2:14},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0164-x},
doi = {10.1186/S13040-018-0164-X},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SipperFAM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SipperUM18,
author = {Moshe Sipper and
Ryan J. Urbanowicz and
Jason H. Moore},
title = {To know the objective is not (necessarily) to know the objective function},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {21:1--21:3},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0182-8},
doi = {10.1186/S13040-018-0182-8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SipperUM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TiptonCHGKSDDMG18,
author = {Laura Tipton and
Karen T. Cuenco and
Laurence Huang and
Ruth M. Greenblatt and
Eric Kleerup and
Frank C. Sciurba and
Steven R. Duncan and
Michael P. Donahoe and
Alison Morris and
Elodie Ghedin},
title = {Measuring associations between the microbiota and repeated measures
of continuous clinical variables using a lasso-penalized generalized
linear mixed model},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {12:1--12:20},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0173-9},
doi = {10.1186/S13040-018-0173-9},
timestamp = {Tue, 04 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/TiptonCHGKSDDMG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ToFR18,
author = {Kimberly To and
Rebecca C. Fry and
David M. Reif},
title = {Characterizing the effects of missing data and evaluating imputation
methods for chemical prioritization applications using ToxPi},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {10:1--10:12},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0169-5},
doi = {10.1186/S13040-018-0169-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ToFR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/VermaLZVDLLUMKR18,
author = {Shefali S. Verma and
Anastasia Lucas and
Xinyuan Zhang and
Yogasudha Veturi and
Scott M. Dudek and
Binglan Li and
Ruowang Li and
Ryan J. Urbanowicz and
Jason H. Moore and
Dokyoon Kim and
Marylyn D. Ritchie},
title = {Collective feature selection to identify crucial epistatic variants},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {5:1--5:22},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0168-6},
doi = {10.1186/S13040-018-0168-6},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/VermaLZVDLLUMKR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YangWLCC18,
author = {Cheng{-}Hong Yang and
Kuo{-}Chuan Wu and
Yu{-}Shiun Lin and
Li{-}Yeh Chuang and
Hsueh{-}Wei Chang},
title = {Protein folding prediction in the {HP} model using ions motion optimization
with a greedy algorithm},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {17:1--17:14},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0176-6},
doi = {10.1186/S13040-018-0176-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/YangWLCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangWDX18,
author = {Jing Zhang and
Dan Wu and
Yiqin Dai and
Jianjiang Xu},
title = {Functional relevance for central cornea thickness-associated genetic
variants by using integrative analyses},
journal = {BioData Min.},
volume = {11},
number = {1},
pages = {19:1--19:13},
year = {2018},
url = {https://doi.org/10.1186/s13040-018-0179-3},
doi = {10.1186/S13040-018-0179-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangWDX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AhmedSGMHL17,
author = {Musaddeque Ahmed and
Richard C. Sallari and
Haiyang Guo and
Jason H. Moore and
Housheng H. He and
Mathieu Lupien},
title = {Variant Set Enrichment: an {R} package to identify disease-associated
functional genomic regions},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {9:1--9:5},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0129-5},
doi = {10.1186/S13040-017-0129-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AhmedSGMHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Al-HusainH17,
author = {Luluah Al{-}Husain and
Alaaeldin M. Hafez},
title = {Cluster ensemble based on Random Forests for genetic data},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {37:1--37:25},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0156-2},
doi = {10.1186/S13040-017-0156-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Al-HusainH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BattogtokhMM17,
author = {Bilguunzaya Battogtokh and
Majid Mojirsheibani and
James Malley},
title = {The optimal crowd learning machine},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {16:1--16:12},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0135-7},
doi = {10.1186/S13040-017-0135-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BattogtokhMM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BerghoffKKWG17,
author = {Bork A. Berghoff and
Torgny Karlsson and
Thomas K{\"{a}}llman and
E. Gerhart H. Wagner and
Manfred G. Grabherr},
title = {RNA-sequence data normalization through in silico prediction of reference
genes: the bacterial response to {DNA} damage as case study},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {30:1--30:20},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0150-8},
doi = {10.1186/S13040-017-0150-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BerghoffKKWG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BragaADNBT17,
author = {Lucas P. P. Braga and
Rafael F. Alves and
Marina T. F. Dellias and
Acacio A. Navarrete and
Thiago O. Basso and
Siu M. Tsai},
title = {Vinasse fertirrigation alters soil resistome dynamics: an analysis
based on metagenomic profiles},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {17:1--17:7},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0138-4},
doi = {10.1186/S13040-017-0138-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BragaADNBT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Chicco17,
author = {Davide Chicco},
title = {Ten quick tips for machine learning in computational biology},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {35:1--35:17},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0155-3},
doi = {10.1186/S13040-017-0155-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Chicco17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CoparZZ17,
author = {Andrej Copar and
Marinka Zitnik and
Blaz Zupan},
title = {Scalable non-negative matrix tri-factorization},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {41:1--41:16},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0160-6},
doi = {10.1186/S13040-017-0160-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CoparZZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CrabtreeMBG17,
author = {Nathaniel Crabtree and
Jason H. Moore and
John F. Bowyer and
Nysia I. George},
title = {Multi-class computational evolution: development, benchmark evaluation
and application to RNA-Seq biomarker discovery},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {13:1--13:18},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0134-8},
doi = {10.1186/S13040-017-0134-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CrabtreeMBG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DenaxasDGPCMHS17,
author = {Spiros C. Denaxas and
Kenan Direk and
Arturo Gonzalez{-}Izquierdo and
Maria Pikoula and
Sera Aylin Cakiroglu and
Jason H. Moore and
Harry Hemingway and
Liam Smeeth},
title = {Methods for enhancing the reproducibility of biomedical research findings
using electronic health records},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {31:1--31:19},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0151-7},
doi = {10.1186/S13040-017-0151-7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DenaxasDGPCMHS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DuCSLL17,
author = {Wei Du and
Zhongbo Cao and
Tianci Song and
Ying Li and
Yanchun Liang},
title = {A feature selection method based on multiple kernel learning with
expression profiles of different types},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {4:1--4:16},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0124-x},
doi = {10.1186/S13040-017-0124-X},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DuCSLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FiannacaRPRU17,
author = {Antonino Fiannaca and
Massimo La Rosa and
Laura La Paglia and
Riccardo Rizzo and
Alfonso Urso},
title = {nRC: non-coding {RNA} Classifier based on structural features},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {27:1--27:18},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0148-2},
doi = {10.1186/S13040-017-0148-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FiannacaRPRU17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Gonzalez-Valbuena17,
author = {Elpidio{-}Emmanuel Gonzalez{-}Valbuena and
Victor Trevino},
title = {Metrics to estimate differential co-expression networks},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {32:1--32:15},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0152-6},
doi = {10.1186/S13040-017-0152-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Gonzalez-Valbuena17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HolzingerVMHDGL17,
author = {Emily Rose Holzinger and
Shefali S. Verma and
Carrie Colleen Buchanan Moore and
Molly A. Hall and
Rishika De and
Diane Gilbert{-}Diamond and
Matthew B. Lanktree and
Nathan Pankratz and
Antoinette Amuzu and
Amber Burt and
Caroline Dale and
Scott M. Dudek and
Clement E. Furlong and
Tom R. Gaunt and
Daniel Seung Kim and
Helene Riess and
Suthesh Sivapalaratnam and
Vinicius Tragante and
Erik P. A. van Iperen and
Ariel Brautbar and
David S. Carrell and
David R. Crosslin and
Gail P. Jarvik and
Helena Kuivaniemi and
Iftikhar J. Kullo and
Eric B. Larson and
Laura J. Rasmussen{-}Torvik and
Gerard Tromp and
Jens Baumert and
Karen J. Cruickshanks and
Martin Farrall and
Aroon D. Hingorani and
G. K. Hovingh and
Marcus E. Kleber and
Barbara E. Klein and
Ronald Klein and
Wolfgang Koenig and
Leslie A. Lange and
Winfried M{\"{a}}rz and
Kari E. North and
N. Charlotte Onland{-}Moret and
Alex P. Reiner and
Philippa J. Talmud and
Yvonne T. van der Schouw and
James G. Wilson and
Mika Kivim{\"{a}}ki and
Meena Kumari and
Jason H. Moore and
Fotios Drenos and
Folkert W. Asselbergs and
Brendan J. Keating and
Marylyn D. Ritchie},
title = {Discovery and replication of {SNP-SNP} interactions for quantitative
lipid traits in over 60,000 individuals},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {25:1--25:20},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0145-5},
doi = {10.1186/S13040-017-0145-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HolzingerVMHDGL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KimJLK17,
author = {Sunghwan Kim and
Jae{-}Hwan Jhong and
Jung{-}Jun Lee and
Ja{-}Yong Koo},
title = {Meta-analytic support vector machine for integrating multiple omics
data},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {2:1--2:14},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0126-8},
doi = {10.1186/S13040-017-0126-8},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KimJLK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KimJLK17a,
author = {Sunghwan Kim and
Jae{-}Hwan Jhong and
Jung{-}Jun Lee and
Ja{-}Yong Koo},
title = {Erratum to: Meta-analytic support vector machine for integrating multiple
omics data},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {8:1--8:2},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0128-6},
doi = {10.1186/S13040-017-0128-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KimJLK17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KordmahallehSHH17,
author = {Mina Moradi Kordmahalleh and
Mohammad Gorji Sefidmazgi and
Scott H. Harrison and
Abdollah Homaifar},
title = {Identifying time-delayed gene regulatory networks via an evolvable
hierarchical recurrent neural network},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {29:1--29:25},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0146-4},
doi = {10.1186/S13040-017-0146-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KordmahallehSHH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LangdonL17,
author = {William B. Langdon and
Brian Yee Hong Lam},
title = {Genetically improved BarraCUDA},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {28:1--28:11},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0149-1},
doi = {10.1186/S13040-017-0149-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LangdonL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeeS17,
author = {Hyeonjeong Lee and
Miyoung Shin},
title = {Mining pathway associations for disease-related pathway activity analysis
based on gene expression and methylation data},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {3:1--3:13},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0127-7},
doi = {10.1186/S13040-017-0127-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LeeS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiangK17,
author = {Yulan Liang and
Arpad Kelemen},
title = {Computational dynamic approaches for temporal omics data with applications
to systems medicine},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {20:1--20:20},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0140-x},
doi = {10.1186/S13040-017-0140-X},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiangK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiuSM17,
author = {Zhenqiu Liu and
Fengzhu Sun and
Dermot P. B. McGovern},
title = {Sparse generalized linear model with {L} 0 approximation for feature
selection and prediction with big omics data},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {39:1--39:12},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0159-z},
doi = {10.1186/S13040-017-0159-Z},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiuSM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LokhovMKBA17,
author = {Petr G. Lokhov and
Dmitri L. Maslov and
Oleg N. Kharibin and
Elena E. Balashova and
Alexander I. Archakov},
title = {Label-free data standardization for clinical metabolomics},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {10:1--10:12},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0132-x},
doi = {10.1186/S13040-017-0132-X},
timestamp = {Fri, 02 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LokhovMKBA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LysenkoBT17,
author = {Artem Lysenko and
Keith A. Boroevich and
Tatsuhiko Tsunoda},
title = {Arete - candidate gene prioritization using biological network topology
with additional evidence types},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {22:1--22:12},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0141-9},
doi = {10.1186/S13040-017-0141-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LysenkoBT17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Mohammadhassanzadeh17,
author = {Hossein Mohammadhassanzadeh and
William Van Woensel and
Samina Raza Abidi and
Syed Sibte Raza Abidi},
title = {Semantics-based plausible reasoning to extend the knowledge coverage
of medical knowledge bases for improved clinical decision support},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {7:1--7:31},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0123-y},
doi = {10.1186/S13040-017-0123-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Mohammadhassanzadeh17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MonroeATMLMWM17,
author = {J. Grey Monroe and
Zachariah A. Allen and
Paul Tanger and
Jack L. Mullen and
John T. Lovell and
Brook T. Moyers and
L. Darrell Whitley and
John K. McKay},
title = {TSPmap, a tool making use of traveling salesperson problem solvers
in the efficient and accurate construction of high-density genetic
linkage maps},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {38:1--38:15},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0158-0},
doi = {10.1186/S13040-017-0158-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MonroeATMLMWM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MooreAOCLBOGA17,
author = {Jason H. Moore and
Peter C. Andrews and
Randal S. Olson and
Sarah E. Carlson and
Curt Larock and
Mario J. Bulhoes and
James P. O'Connor and
Ellen M. Greytak and
Steven Armentrout},
title = {Grid-based stochastic search for hierarchical gene-gene interactions
in population-based genetic studies of common human diseases},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {19:1--19:16},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0139-3},
doi = {10.1186/S13040-017-0139-3},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MooreAOCLBOGA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NeumannGH17,
author = {Ursula Neumann and
Nikita Genze and
Dominik Heider},
title = {{EFS:} an ensemble feature selection tool implemented as R-package
and web-application},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {21:1--21:9},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0142-8},
doi = {10.1186/S13040-017-0142-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/NeumannGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OlsonCOUM17,
author = {Randal S. Olson and
William G. La Cava and
Patryk Orzechowski and
Ryan J. Urbanowicz and
Jason H. Moore},
title = {{PMLB:} a large benchmark suite for machine learning evaluation and
comparison},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {36:1--36:13},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0154-4},
doi = {10.1186/S13040-017-0154-4},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/OlsonCOUM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PerdigaoRO17,
author = {Nelson Perdigao and
Agostinho C. Rosa and
Se{\'{a}}n I. O'Donoghue},
title = {The Dark Proteome Database},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {24:1--24:11},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0144-6},
doi = {10.1186/S13040-017-0144-6},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PerdigaoRO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PhamHBBM17,
author = {Ngoc Cam Pham and
Benjamin Haibe{-}Kains and
Pau Bellot and
Gianluca Bontempi and
Patrick E. Meyer},
title = {Study of Meta-analysis strategies for network inference using information-theoretic
approaches},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {15:1--15:14},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0136-6},
doi = {10.1186/S13040-017-0136-6},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PhamHBBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RayBD17,
author = {Indrani Ray and
Anindya Bhattacharya and
Rajat K. De},
title = {{OCDD:} an obesity and co-morbid disease database},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {33:1--33:11},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0153-5},
doi = {10.1186/S13040-017-0153-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RayBD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RenHLWM17,
author = {Xing Ren and
Qiang Hu and
Song Liu and
Jianmin Wang and
Jeffrey C. Miecznikowski},
title = {Gene set analysis controlling for length bias in RNA-seq experiments},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {5:1--5:18},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0125-9},
doi = {10.1186/S13040-017-0125-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RenHLWM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RodriguezG17,
author = {Nestor Rodriguez and
Sergio Rojas Galeano},
title = {Discovering feature relevancy and dependency by kernel-guided probabilistic
model-building evolution},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {12:1--12:19},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0131-y},
doi = {10.1186/S13040-017-0131-Y},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RodriguezG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SigdelDSDPA17,
author = {Madhav Sigdel and
Imren Din{\c{c}} and
Madhu S. Sigdel and
Semih Din{\c{c}} and
Marc L. Pusey and
Ramazan Savas Ayg{\"{u}}n},
title = {Feature analysis for classification of trace fluorescent labeled protein
crystallization images},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {14:1--14:35},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0133-9},
doi = {10.1186/S13040-017-0133-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SigdelDSDPA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SipperM17,
author = {Moshe Sipper and
Jason H. Moore},
title = {Artificial intelligence: more human with human},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {34:1--34:2},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0157-1},
doi = {10.1186/S13040-017-0157-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SipperM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SipperOM17,
author = {Moshe Sipper and
Randal S. Olson and
Jason H. Moore},
title = {Evolutionary computation: the next major transition of artificial
intelligence?},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {26:1--26:3},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0147-3},
doi = {10.1186/S13040-017-0147-3},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SipperOM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SunSLLZ17,
author = {Yingxia Sun and
Junliang Shang and
Jin{-}Xing Liu and
Shengjun Li and
Chun{-}Hou Zheng},
title = {epiACO - a method for identifying epistasis based on ant Colony optimization
algorithm},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {23:1--23:17},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0143-7},
doi = {10.1186/S13040-017-0143-7},
timestamp = {Sat, 13 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SunSLLZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TraganteGFVSVPH17,
author = {Vinicius Tragante and
Johannes M. I. H. Gho and
Janine F. Felix and
Ramachandran S. Vasan and
Nicholas L. Smith and
Benjamin F. Voight and
Colin Palmer and
Pim van der Harst and
Jason H. Moore and
Folkert W. Asselbergs},
title = {Gene Set Enrichment Analyses: lessons learned from the heart failure
phenotype},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {18:1--18:11},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0137-5},
doi = {10.1186/S13040-017-0137-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/TraganteGFVSVPH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Tsur17,
author = {Elishai Ezra Tsur},
title = {Rapid development of entity-based data models for bioinformatics with
persistence object-oriented design and structured interfaces},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {11:1--11:12},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0130-z},
doi = {10.1186/S13040-017-0130-Z},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/Tsur17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WuWCL17,
author = {Wei Wu and
Zhiheng Wang and
Peisheng Cong and
Tonghua Li},
title = {Accurate prediction of protein relative solvent accessibility using
a balanced model},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {1:1--1:14},
year = {2017},
url = {https://doi.org/10.1186/s13040-016-0121-5},
doi = {10.1186/S13040-016-0121-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WuWCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/XieCDLSZYH17,
author = {Qiwei Xie and
Xi Chen and
Hao Deng and
Danqian Liu and
Yingyu Sun and
Xiaojuan Zhou and
Yang Yang and
Hua Han},
title = {An automated pipeline for bouton, spine, and synapse detection of
in vivo two-photon images},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {40:1--40:23},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0161-5},
doi = {10.1186/S13040-017-0161-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/XieCDLSZYH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangLZZHZCC17,
author = {Fan Zhang and
Jie{-}Diao Lin and
Xiao{-}Yu Zuo and
Yi{-}Xuan Zhuang and
Chao{-}Qun Hong and
Guo{-}Jun Zhang and
Xiao{-}Jiang Cui and
Yu{-}Kun Cui},
title = {Elevated transcriptional levels of aldolase {A} {(ALDOA)} associates
with cell cycle-related genes in patients with {NSCLC} and several
solid tumors},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {6:1--6:20},
year = {2017},
url = {https://doi.org/10.1186/s13040-016-0122-4},
doi = {10.1186/S13040-016-0122-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangLZZHZCC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChangCC16,
author = {Jennifer Chang and
Hyejin Cho and
Hui{-}Hsien Chou},
title = {Mango: combining and analyzing heterogeneous biological networks},
journal = {BioData Min.},
volume = {9},
pages = {25},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0105-5},
doi = {10.1186/S13040-016-0105-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChangCC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChengAAM16,
author = {Samantha Cheng and
Angeline S. Andrew and
Peter C. Andrews and
Jason H. Moore},
title = {Complex systems analysis of bladder cancer susceptibility reveals
a role for decarboxylase activity in two genome-wide association studies},
journal = {BioData Min.},
volume = {9},
pages = {40:1--40:6},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0119-z},
doi = {10.1186/S13040-016-0119-Z},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChengAAM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DenaxasAM16,
author = {Spiros C. Denaxas and
Folkert W. Asselbergs and
Jason H. Moore},
title = {The tip of the iceberg: challenges of accessing hospital electronic
health record data for biological data mining},
journal = {BioData Min.},
volume = {9},
pages = {29},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0109-1},
doi = {10.1186/S13040-016-0109-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DenaxasAM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DhifliD16,
author = {Wajdi Dhifli and
Abdoulaye Banir{\'{e}} Diallo},
title = {ProtNN: fast and accurate protein 3D-structure classification in structural
and topological space},
journal = {BioData Min.},
volume = {9},
pages = {30},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0108-2},
doi = {10.1186/S13040-016-0108-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DhifliD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FinkelmanFK16,
author = {Brian S. Finkelman and
Benjamin French and
Stephen E. Kimmel},
title = {The prediction accuracy of dynamic mixed-effects models in clustered
data},
journal = {BioData Min.},
volume = {9},
pages = {5},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0084-6},
doi = {10.1186/S13040-016-0084-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FinkelmanFK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FisconWCPGBCCPB16,
author = {Giulia Fiscon and
Emanuel Weitschek and
Eleonora Cella and
Alessandra Lo Presti and
Marta Giovanetti and
Muhammed Babakir{-}Mina and
Marco Ciotti and
Massimo Ciccozzi and
Alessandra Pierangeli and
Paola Bertolazzi and
Giovanni Felici},
title = {{MISSEL:} a method to identify a large number of small species-specific
genomic subsequences and its application to viruses classification},
journal = {BioData Min.},
volume = {9},
pages = {38:1--38:24},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0116-2},
doi = {10.1186/S13040-016-0116-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FisconWCPGBCCPB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ForeroM16,
author = {Diego A. Forero and
Jason H. Moore},
title = {Considerations for higher efficiency and productivity in research
activities},
journal = {BioData Min.},
volume = {9},
pages = {35:1--35:4},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0115-3},
doi = {10.1186/S13040-016-0115-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ForeroM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HeinkeBKL16,
author = {Florian Heinke and
Sebastian Bittrich and
Florian Kaiser and
Dirk Labudde},
title = {SequenceCEROSENE: a computational method and web server to visualize
spatial residue neighborhoods at the sequence level},
journal = {BioData Min.},
volume = {9},
pages = {6},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0083-7},
doi = {10.1186/S13040-016-0083-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HeinkeBKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HimmelsteinGM16,
author = {Daniel S. Himmelstein and
Casey S. Greene and
Jason H. Moore},
title = {Erratum to: Evolving hard problems: generating human genetics datasets
with a complex etiology},
journal = {BioData Min.},
volume = {9},
pages = {9},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0085-5},
doi = {10.1186/S13040-016-0085-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HimmelsteinGM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HongPCJ16,
author = {Na Hong and
Jyotishman Pathak and
Christopher G. Chute and
Guoqian Jiang},
title = {Developing a modular architecture for creation of rule-based clinical
diagnostic criteria},
journal = {BioData Min.},
volume = {9},
pages = {33},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0113-5},
doi = {10.1186/S13040-016-0113-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HongPCJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuangGZHKMMW16,
author = {Minjun Huang and
Britney E. Graham and
Ge Zhang and
Reed Harder and
Nuri Kodaman and
Jason H. Moore and
Louis J. Muglia and
Scott M. Williams},
title = {Evolutionary triangulation: informing genetic association studies
with evolutionary evidence},
journal = {BioData Min.},
volume = {9},
pages = {12},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0091-7},
doi = {10.1186/S13040-016-0091-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HuangGZHKMMW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/IcayCCRLH16,
author = {Katherine Icay and
Ping Chen and
Alejandra Cervera and
Ville Rantanen and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {SePIA: {RNA} and small {RNA} sequence processing, integration, and
analysis},
journal = {BioData Min.},
volume = {9},
pages = {20},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0099-z},
doi = {10.1186/S13040-016-0099-Z},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/IcayCCRLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KarbhalSK16,
author = {Rajiv Karbhal and
Sangeeta Sawant and
Urmila Kulkarni{-}Kale},
title = {Erratum to: BioDB extractor: customized data extraction system for
commonly used bioinformatics databases},
journal = {BioData Min.},
volume = {9},
pages = {8},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0081-9},
doi = {10.1186/S13040-016-0081-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KarbhalSK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LazzariniWWHKB16,
author = {Nicola Lazzarini and
Pawel Widera and
Stuart Williamson and
Rakesh Heer and
Natalio Krasnogor and
Jaume Bacardit},
title = {Functional networks inference from rule-based machine learning models},
journal = {BioData Min.},
volume = {9},
pages = {28},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0106-4},
doi = {10.1186/S13040-016-0106-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LazzariniWWHKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeeYKAYCKK16,
author = {Jun Hwa Lee and
Byong Chul Yoo and
Yun Hwan Kim and
Sun{-}A. Ahn and
Seung{-}Gu Yeo and
Jae Youl Cho and
Kyung{-}Hee Kim and
Seung Cheol Kim},
title = {Low-mass-ion discriminant equation {(LOME)} for ovarian cancer screening},
journal = {BioData Min.},
volume = {9},
pages = {32},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0111-7},
doi = {10.1186/S13040-016-0111-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LeeYKAYCKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiDKHBPBLMBR16,
author = {Ruowang Li and
Scott M. Dudek and
Dokyoon Kim and
Molly A. Hall and
Yukiko Bradford and
Peggy L. Peissig and
Murray H. Brilliant and
James G. Linneman and
Catherine A. McCarty and
Le Bao and
Marylyn D. Ritchie},
title = {Identification of genetic interaction networks via an evolutionary
algorithm evolved Bayesian network},
journal = {BioData Min.},
volume = {9},
pages = {18},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0094-4},
doi = {10.1186/S13040-016-0094-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiDKHBPBLMBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiFSCWW16,
author = {Jinyan Li and
Simon Fong and
Yunsick Sung and
Kyungeun Cho and
Raymond K. Wong and
Kelvin Kian Loong Wong},
title = {Adaptive swarm cluster-based dynamic multi-objective synthetic minority
oversampling technique algorithm for tackling binary imbalanced datasets
in biomedical data classification},
journal = {BioData Min.},
volume = {9},
pages = {37:1--37:15},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0117-1},
doi = {10.1186/S13040-016-0117-1},
timestamp = {Thu, 24 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiFSCWW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiMAKM16,
author = {Jing Li and
James D. Malley and
Angeline S. Andrew and
Margaret R. Karagas and
Jason H. Moore},
title = {Detecting gene-gene interactions using a permutation-based random
forest method},
journal = {BioData Min.},
volume = {9},
pages = {14},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0093-5},
doi = {10.1186/S13040-016-0093-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiMAKM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiangRZKGSSCSJS16,
author = {Ma Liang and
Castle Raley and
Xin Zheng and
Geetha Kutty and
Emile Gogineni and
Brad T. Sherman and
Qiang Sun and
Xiongfong Chen and
Thomas Skelly and
Kristine Jones and
Robert M. Stephens and
Bin Zhou and
William W. Lau and
Calvin A. Johnson and
Tomozumi Imamichi and
Minkang Jiang},
title = {Distinguishing highly similar gene isoforms with a clustering-based
bioinformatics analysis of PacBio single-molecule long reads},
journal = {BioData Min.},
volume = {9},
pages = {13},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0090-8},
doi = {10.1186/S13040-016-0090-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiangRZKGSSCSJS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LouhimoLBKLH16,
author = {Riku Louhimo and
Marko Laakso and
Denis Belitskin and
Juha Klefstr{\"{o}}m and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {Data integration to prioritize drugs using genomics and curated data},
journal = {BioData Min.},
volume = {9},
pages = {21},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0097-1},
doi = {10.1186/S13040-016-0097-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LouhimoLBKLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LynchM16,
author = {Shannon M. Lynch and
Jason H. Moore},
title = {A call for biological data mining approaches in epidemiology},
journal = {BioData Min.},
volume = {9},
pages = {1},
year = {2016},
url = {https://doi.org/10.1186/s13040-015-0079-8},
doi = {10.1186/S13040-015-0079-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LynchM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LysenkoRSMRA16,
author = {Artem Lysenko and
Irina A. Roznovat and
Mansoor A. S. Saqi and
Alexander Mazein and
Christopher J. Rawlings and
Charles Auffray},
title = {Representing and querying disease networks using graph databases},
journal = {BioData Min.},
volume = {9},
pages = {23},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0102-8},
doi = {10.1186/S13040-016-0102-8},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LysenkoRSMRA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MeherSR16,
author = {Prabina Kumar Meher and
Tanmaya Kumar Sahu and
Atmakuri Ramakrishna Rao},
title = {Prediction of donor splice sites using random forest with a new sequence
encoding approach},
journal = {BioData Min.},
volume = {9},
pages = {4},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0086-4},
doi = {10.1186/S13040-016-0086-4},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/MeherSR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MilicchioRBMP16,
author = {Franco Milicchio and
Rebecca Rose and
Jiang Bian and
Jae Min and
Mattia Prosperi},
title = {Visual programming for next-generation sequencing data analytics},
journal = {BioData Min.},
volume = {9},
pages = {16},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0095-3},
doi = {10.1186/S13040-016-0095-3},
timestamp = {Wed, 06 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MilicchioRBMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MilioliVTRBM16,
author = {Heloisa H. Milioli and
Renato Vimieiro and
Inna Tishchenko and
Carlos Riveros and
Regina Berretta and
Pablo Moscato},
title = {Iteratively refining breast cancer intrinsic subtypes in the {METABRIC}
dataset},
journal = {BioData Min.},
volume = {9},
pages = {2},
year = {2016},
url = {https://doi.org/10.1186/s13040-015-0078-9},
doi = {10.1186/S13040-015-0078-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MilioliVTRBM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MooreBWFR16,
author = {Carrie Colleen Buchanan Moore and
Anna Okula Basile and
John R. Wallace and
Alex Thomas Frase and
Marylyn DeRiggi Ritchie},
title = {A biologically informed method for detecting rare variant associations},
journal = {BioData Min.},
volume = {9},
pages = {27},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0107-3},
doi = {10.1186/S13040-016-0107-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MooreBWFR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MooreH16,
author = {Jason H. Moore and
John H. Holmes},
title = {The golden era of biomedical informatics has begun},
journal = {BioData Min.},
volume = {9},
pages = {15},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0092-6},
doi = {10.1186/S13040-016-0092-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MooreH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MoreMP16,
author = {Ravi Prabhakar More and
Rupali Chandrashekhar Mane and
Hemant J. Purohit},
title = {matK-QR classifier: a patterns based approach for plant species identification},
journal = {BioData Min.},
volume = {9},
pages = {39:1--39:15},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0120-6},
doi = {10.1186/S13040-016-0120-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MoreMP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Munoz-TorresRBG16,
author = {Pau M. Mu{\~{n}}oz{-}Torres and
Filip Rokc and
Robert Beluzic and
Ivana Grbesa and
Oliver Vugrek},
title = {msBiodat analysis tool, big data analysis for high-throughput experiments},
journal = {BioData Min.},
volume = {9},
pages = {26},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0104-6},
doi = {10.1186/S13040-016-0104-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Munoz-TorresRBG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NeumannRSBKCH16,
author = {Ursula Neumann and
Mona Riemenschneider and
Jan{-}Peter Sowa and
Theodor Baars and
Julia K{\"{a}}lsch and
Ali Canbay and
Dominik Heider},
title = {Compensation of feature selection biases accompanied with improved
predictive performance for binary classification by using a novel
ensemble feature selection approach},
journal = {BioData Min.},
volume = {9},
pages = {36:1--36:14},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0114-4},
doi = {10.1186/S13040-016-0114-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/NeumannRSBKCH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OkimotoZWLNFTHC16,
author = {Gordon Okimoto and
Ashkan Zeinalzadeh and
Tom Wenska and
Michael Loomis and
James B. Nation and
Tiphaine Fabre and
Maarit Tiirikainen and
Brenda Hernandez and
Owen Chan and
Linda Wong and
Sandi Kwee},
title = {Joint analysis of multiple high-dimensional data types using sparse
matrix approximations of rank-1 with applications to ovarian and liver
cancer},
journal = {BioData Min.},
volume = {9},
pages = {24},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0103-7},
doi = {10.1186/S13040-016-0103-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/OkimotoZWLNFTHC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OzgurHH16,
author = {Arzucan {\"{O}}zg{\"{u}}r and
Junguk Hur and
Yongqun He},
title = {The Interaction Network Ontology-supported modeling and mining of
complex interactions represented with multiple keywords in biomedical
literature},
journal = {BioData Min.},
volume = {9},
pages = {41:1--41:17},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0118-0},
doi = {10.1186/S13040-016-0118-0},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/OzgurHH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RazaLSENR16,
author = {Shan{-}E{-}Ahmed Raza and
Daniel Langenk{\"{a}}mper and
Korsuk Sirinukunwattana and
David B. A. Epstein and
Tim W. Nattkemper and
Nasir M. Rajpoot},
title = {Robust normalization protocols for multiplexed fluorescence bioimage
analysis},
journal = {BioData Min.},
volume = {9},
pages = {11},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0088-2},
doi = {10.1186/S13040-016-0088-2},
timestamp = {Thu, 16 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/RazaLSENR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Riemenschneider16,
author = {Mona Riemenschneider and
Robin Senge and
Ursula Neumann and
Eyke H{\"{u}}llermeier and
Dominik Heider},
title = {Exploiting {HIV-1} protease and reverse transcriptase cross-resistance
information for improved drug resistance prediction by means of multi-label
classification},
journal = {BioData Min.},
volume = {9},
pages = {10},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0089-1},
doi = {10.1186/S13040-016-0089-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Riemenschneider16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SolimanNC16,
author = {Maha Soliman and
Olfa Nasraoui and
Nigel G. F. Cooper},
title = {Building a glaucoma interaction network using a text mining approach},
journal = {BioData Min.},
volume = {9},
pages = {17},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0096-2},
doi = {10.1186/S13040-016-0096-2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SolimanNC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SongYKRWSSG16,
author = {Ailin Song and
Jingwen Yan and
Sungeun Kim and
Shannon L. Risacher and
Aaron K. Wong and
Andrew J. Saykin and
Li Shen and
Casey S. Greene},
title = {Network-based analysis of genetic variants associated with hippocampal
volume in Alzheimer's disease: a study of {ADNI} cohorts},
journal = {BioData Min.},
volume = {9},
pages = {3},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0082-8},
doi = {10.1186/S13040-016-0082-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SongYKRWSSG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SzymczakHDMMMBS16,
author = {Silke Szymczak and
Emily Rose Holzinger and
Abhijit Dasgupta and
James D. Malley and
Anne M. Molloy and
James L. Mills and
Lawrence C. Brody and
Dwight Stambolian and
Joan E. Bailey{-}Wilson},
title = {r2VIM: {A} new variable selection method for random forests in genome-wide
association studies},
journal = {BioData Min.},
volume = {9},
pages = {7},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0087-3},
doi = {10.1186/S13040-016-0087-3},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SzymczakHDMMMBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Taguchi16,
author = {Y{-}h. Taguchi},
title = {Principal component analysis based unsupervised feature extraction
applied to budding yeast temporally periodic gene expression},
journal = {BioData Min.},
volume = {9},
pages = {22},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0101-9},
doi = {10.1186/S13040-016-0101-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Taguchi16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/XingZC16,
author = {Guangming Xing and
Guo{-}Qiang Zhang and
Licong Cui},
title = {{FEDRR:} fast, exhaustive detection of redundant hierarchical relations
for quality improvement of large biomedical ontologies},
journal = {BioData Min.},
volume = {9},
pages = {31},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0110-8},
doi = {10.1186/S13040-016-0110-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/XingZC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangWDAGZHJ16,
author = {Yile Zhang and
Yau Shu Wong and
Jian Deng and
Cristina Anton and
Stephan Gabos and
Weiping Zhang and
Dorothy Yu Huang and
Can Jin},
title = {Machine learning algorithms for mode-of-action classification in toxicity
assessment},
journal = {BioData Min.},
volume = {9},
pages = {19},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0098-0},
doi = {10.1186/S13040-016-0098-0},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangWDAGZHJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AlexeevBKMTG15,
author = {Dmitry G. Alexeev and
Tanya Bibikova and
Boris Kovarsky and
Damir Melnikov and
Alexander V. Tyakht and
Vadim Govorun},
title = {Bacterial rose garden for metagenomic SNP-based phylogeny visualization},
journal = {BioData Min.},
volume = {8},
pages = {10},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0045-5},
doi = {10.1186/S13040-015-0045-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AlexeevBKMTG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BeamMD15,
author = {Andrew L. Beam and
Alison A. Motsinger{-}Reif and
Jon Doyle},
title = {An investigation of gene-gene interactions in dose-response studies
with Bayesian nonparametrics},
journal = {BioData Min.},
volume = {8},
pages = {6},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0039-3},
doi = {10.1186/S13040-015-0039-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BeamMD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BeckF15,
author = {Daniel Beck and
James A. Foster},
title = {Machine learning classifiers provide insight into the relationship
between microbial communities and bacterial vaginosis},
journal = {BioData Min.},
volume = {8},
pages = {23},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0055-3},
doi = {10.1186/S13040-015-0055-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BeckF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BosseHHNDLTM15,
author = {Magnus Bosse and
Alexander Heuwieser and
Andreas Heinzel and
Ivan Nancucheo and
Hivana Melo Barbosa Dall'Agnol and
Arno Lukas and
George Tzotzos and
Bernd Mayer},
title = {Interaction networks for identifying coupled molecular processes in
microbial communities},
journal = {BioData Min.},
volume = {8},
pages = {21},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0054-4},
doi = {10.1186/S13040-015-0054-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BosseHHNDLTM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChingMWG15,
author = {Travers Ching and
Jayson Masaki and
Jason Weirather and
Lana X. Garmire},
title = {Non-coding yet non-trivial: a review on the computational genomics
of lincRNAs},
journal = {BioData Min.},
volume = {8},
pages = {44},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0075-z},
doi = {10.1186/S13040-015-0075-Z},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChingMWG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CieslikB15,
author = {Marcin Cieslik and
Stefan Bekiranov},
title = {Genome-wide predictors of NF-{\(\kappa\)}B recruitment and transcriptional
activity},
journal = {BioData Min.},
volume = {8},
pages = {37},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0071-3},
doi = {10.1186/S13040-015-0071-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CieslikB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DeHMG15,
author = {Rishika De and
Ting Hu and
Jason H. Moore and
Diane Gilbert{-}Diamond},
title = {Characterizing gene-gene interactions in a statistical epistasis network
of twelve candidate genes for obesity},
journal = {BioData Min.},
volume = {8},
pages = {45},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0077-x},
doi = {10.1186/S13040-015-0077-X},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DeHMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DeVDHHHCCHJLPRM15,
author = {Rishika De and
Shefali S. Verma and
Fotios Drenos and
Emily Rose Holzinger and
Michael Holmes and
Molly A. Hall and
David R. Crosslin and
David Carrell and
Hakon Hakonarson and
Gail P. Jarvik and
Eric B. Larson and
Jennifer A. Pacheco and
Laura Rasmussen{-}Torvik and
Carrie Moore and
Folkert W. Asselbergs and
Jason H. Moore and
Marylyn D. Ritchie and
Brendan Keating and
Diane Gilbert{-}Diamond},
title = {Identifying gene-gene interactions that are highly associated with
Body Mass Index using Quantitative Multifactor Dimensionality Reduction
{(QMDR)}},
journal = {BioData Min.},
volume = {8},
pages = {41},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0074-0},
doi = {10.1186/S13040-015-0074-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/DeVDHHHCCHJLPRM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Demidenko15,
author = {Eugene Demidenko},
title = {Microarray enriched gene rank},
journal = {BioData Min.},
volume = {8},
pages = {2},
year = {2015},
url = {https://doi.org/10.1186/s13040-014-0033-1},
doi = {10.1186/S13040-014-0033-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Demidenko15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DumitrescuGBFBC15,
author = {Logan Dumitrescu and
Robert J. Goodloe and
Yukiko Bradford and
Eric Farber{-}Eger and
Jonathan Boston and
Dana C. Crawford},
title = {The effects of electronic medical record phenotyping details on genetic
association studies: {HDL-C} as a case study},
journal = {BioData Min.},
volume = {8},
pages = {15},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0048-2},
doi = {10.1186/S13040-015-0048-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DumitrescuGBFBC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DumitrescuRGBFP15,
author = {Logan Dumitrescu and
Nicole A. Restrepo and
Robert J. Goodloe and
Jonathan Boston and
Eric Farber{-}Eger and
Sarah A. Pendergrass and
William S. Bush and
Dana C. Crawford},
title = {Towards a phenome-wide catalog of human clinical traits impacted by
genetic ancestry},
journal = {BioData Min.},
volume = {8},
pages = {35},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0068-y},
doi = {10.1186/S13040-015-0068-Y},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DumitrescuRGBFP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FrostLM15,
author = {H. Robert Frost and
Zhigang Li and
Jason H. Moore},
title = {Principal component gene set enrichment {(PCGSE)}},
journal = {BioData Min.},
volume = {8},
pages = {25},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0059-z},
doi = {10.1186/S13040-015-0059-Z},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FrostLM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Gardner-LubbeD15,
author = {Sugnet Gardner{-}Lubbe and
Felix S. Dube},
title = {Visualisation of quadratic discriminant analysis and its application
in exploration of microbial interactions},
journal = {BioData Min.},
volume = {8},
pages = {8},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0041-9},
doi = {10.1186/S13040-015-0041-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Gardner-LubbeD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Gomez-RuedaMMPT15,
author = {Hugo G{\'{o}}mez{-}Rueda and
Emmanuel Mart{\'{\i}}nez{-}Ledesma and
Antonio Mart{\'{\i}}nez{-}Torteya and
Rebeca Palacios{-}Corona and
Victor Trevino},
title = {Integration and comparison of different genomic data for outcome prediction
in cancer},
journal = {BioData Min.},
volume = {8},
pages = {32},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0065-1},
doi = {10.1186/S13040-015-0065-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Gomez-RuedaMMPT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GuiGSTMK15,
author = {Jiang Gui and
Casey S. Greene and
Con Sullivan and
Walter Taylor and
Jason H. Moore and
Carol Kim},
title = {Testing multiple hypotheses through {IMP} weighted {FDR} based on
a genetic functional network with application to a new zebrafish transcriptome
study},
journal = {BioData Min.},
volume = {8},
pages = {17},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0050-8},
doi = {10.1186/S13040-015-0050-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GuiGSTMK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HaiderLPLDKLG15,
author = {Syed Haider and
Zoltan Lipinszki and
Marcin Przewloka and
Yaseen Ladak and
Pier D'Avino and
Yuu Kimata and
Pietro Li{\`{o}} and
David Glover},
title = {{DAPPER:} a data-mining resource for protein-protein interactions},
journal = {BioData Min.},
volume = {8},
pages = {30},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0063-3},
doi = {10.1186/S13040-015-0063-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HaiderLPLDKLG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuAKM15,
author = {Ting Hu and
Angeline S. Andrew and
Margaret R. Karagas and
Jason H. Moore},
title = {Functional dyadicity and heterophilicity of gene-gene interactions
in statistical epistasis networks},
journal = {BioData Min.},
volume = {8},
pages = {43},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0062-4},
doi = {10.1186/S13040-015-0062-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HuAKM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuangJBBCCCGHJL15,
author = {Xiuzhen Huang and
Steven F. Jennings and
Barry Bruce and
Alison Buchan and
Liming Cai and
Pengyin Chen and
Carole L. Cramer and
Weihua Guan and
Uwe Hilgert and
Hongmei Jiang and
Zenglu Li and
Gail McClure and
Donald F. McMullen and
Bindu Nanduri and
Andy D. Perkins and
Bhanu Rekepalli and
Saeed Salem and
Jennifer Specker and
Karl Walker and
Donald C. Wunsch and
Donghai Xiong and
Shuzhong Zhang and
Yu Zhang and
Zhongming Zhao and
Jason H. Moore},
title = {Big data - a 21st century science Maginot Line? No-boundary thinking:
shifting from the big data paradigm},
journal = {BioData Min.},
volume = {8},
pages = {7},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0037-5},
doi = {10.1186/S13040-015-0037-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HuangJBBCCCGHJL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JiangLSC15,
author = {Guoqian Jiang and
Hongfang Liu and
Harold R. Solbrig and
Christopher G. Chute},
title = {Mining severe drug-drug interaction adverse events using Semantic
Web technologies: a case study},
journal = {BioData Min.},
volume = {8},
pages = {12},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0044-6},
doi = {10.1186/S13040-015-0044-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/JiangLSC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KarbhalSK15,
author = {Rajiv Karbhal and
Sangeeta Sawant and
Urmila Kulkarni{-}Kale},
title = {BioDB extractor: customized data extraction system for commonly used
bioinformatics databases},
journal = {BioData Min.},
volume = {8},
pages = {31},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0067-z},
doi = {10.1186/S13040-015-0067-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KarbhalSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Langdon15,
author = {William B. Langdon},
title = {Performance of genetic programming optimised Bowtie2 on genome comparison
and analytic testing {(GCAT)} benchmarks},
journal = {BioData Min.},
volume = {8},
pages = {1},
year = {2015},
url = {https://doi.org/10.1186/s13040-014-0034-0},
doi = {10.1186/S13040-014-0034-0},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Langdon15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LareauWOM15,
author = {Caleb A. Lareau and
Bill C. White and
Ann L. Oberg and
Brett A. McKinney},
title = {Differential co-expression network centrality and machine learning
feature selection for identifying susceptibility hubs in networks
with scale-free structure},
journal = {BioData Min.},
volume = {8},
pages = {5},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0040-x},
doi = {10.1186/S13040-015-0040-X},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LareauWOM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LekmanKGHK15,
author = {Magnus Lekman and
Robert Karlsson and
Lisette Graae and
Ola H{\"{o}}ssjer and
Ingrid Kockum},
title = {A significant risk locus on 19q13 for bipolar disorder identified
using a combined genome-wide linkage and copy number variation analysis},
journal = {BioData Min.},
volume = {8},
pages = {42},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0076-y},
doi = {10.1186/S13040-015-0076-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LekmanKGHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiOLL15,
author = {Dingcheng Li and
Janet Okamoto and
Hongfang Liu and
Scott Leischow},
title = {A bibliometric analysis on tobacco regulation investigators},
journal = {BioData Min.},
volume = {8},
pages = {11},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0043-7},
doi = {10.1186/S13040-015-0043-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiOLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LishoutGMWS15,
author = {Fran{\c{c}}ois Van Lishout and
Francesco Gadaleta and
Jason H. Moore and
Louis Wehenkel and
Kristel Van Steen},
title = {gammaMAXT: a fast multiple-testing correction algorithm},
journal = {BioData Min.},
volume = {8},
pages = {36},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0069-x},
doi = {10.1186/S13040-015-0069-X},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LishoutGMWS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiuLP15,
author = {Zhenqiu Liu and
Shili Lin and
Steven T. Piantadosi},
title = {Network construction and structure detection with metagenomic count
data},
journal = {BioData Min.},
volume = {8},
pages = {40},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0072-2},
doi = {10.1186/S13040-015-0072-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiuLP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LuAMHHCB15,
author = {Pinyi Lu and
Vida Abedi and
Yongguo Mei and
Raquel Hontecillas and
Stefan Hoops and
Adria Carbo and
Josep Bassaganya{-}Riera},
title = {Supervised learning methods in modeling of {CD4+} {T} cell heterogeneity},
journal = {BioData Min.},
volume = {8},
pages = {27},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0060-6},
doi = {10.1186/S13040-015-0060-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LuAMHHCB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MadrigalK15,
author = {Pedro Madrigal and
Pawel Krajewski},
title = {Uncovering correlated variabilityin epigenomic datasets usingthe Karhunen-Loeve
transform},
journal = {BioData Min.},
volume = {8},
pages = {20},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0051-7},
doi = {10.1186/S13040-015-0051-7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MadrigalK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MeysmanZCGL15,
author = {Pieter Meysman and
Cheng Zhou and
Boris Cule and
Bart Goethals and
Kris Laukens},
title = {Mining the entire Protein DataBank for frequent spatially cohesive
amino acid patterns},
journal = {BioData Min.},
volume = {8},
pages = {4},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0038-4},
doi = {10.1186/S13040-015-0038-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MeysmanZCGL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MuruganSAVPVK15,
author = {Kasi Murugan and
Sangeetha Shanmugasamy and
Saleh Al{-}Sohaibani and
Naga Vignesh and
Kandavel Palanikannan and
Antonydhason Vimala and
Gopal Kumar},
title = {TaxKB: a knowledge base for new taxane-related drug discovery},
journal = {BioData Min.},
volume = {8},
pages = {19},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0053-5},
doi = {10.1186/S13040-015-0053-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MuruganSAVPVK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Reyes-GibbyWYS15,
author = {Cielito Reyes{-}Gibby and
Jian Wang and
Sai{-}Ching Yeung and
Sanjay Shete},
title = {Informative gene network for chemotherapy-induced peripheral neuropathy},
journal = {BioData Min.},
volume = {8},
pages = {24},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0058-0},
doi = {10.1186/S13040-015-0058-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Reyes-GibbyWYS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SaberE15,
author = {Haifa Ben Saber and
Mourad Elloumi},
title = {A novel biclustering algorithm of binary microarray data: BiBinCons
and BiBinAlter},
journal = {BioData Min.},
volume = {8},
pages = {38},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0070-4},
doi = {10.1186/S13040-015-0070-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SaberE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ShenCCZYZGLZ15,
author = {Weike Shen and
Yuan Cao and
Lei Cha and
Xufei Zhang and
Xiaomin Ying and
Wei Zhang and
Kun Ge and
Wuju Li and
Li Zhong},
title = {Predicting linear B-cell epitopes using amino acid anchoring pair
composition},
journal = {BioData Min.},
volume = {8},
pages = {14},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0047-3},
doi = {10.1186/S13040-015-0047-3},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ShenCCZYZGLZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ThompsonMM15,
author = {Paul Thompson and
Juliette Madan and
Jason H. Moore},
title = {Prediction of relevant biomedical documents: a human microbiome case
study},
journal = {BioData Min.},
volume = {8},
pages = {28},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0061-5},
doi = {10.1186/S13040-015-0061-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ThompsonMM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ValbaNSSKV15,
author = {Olga Valba and
Sergei Nechaev and
Mark G. Sterken and
L. Basten Snoek and
Jan E. Kammenga and
Olga Vasieva},
title = {On predicting regulatory genes by analysis of functional networks
in C. elegans},
journal = {BioData Min.},
volume = {8},
pages = {33},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0066-0},
doi = {10.1186/S13040-015-0066-0},
timestamp = {Wed, 15 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ValbaNSSKV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WallerGSPJ15,
author = {Tomasz Waller and
Tomasz Gubala and
Krzysztof Sarapata and
Monika Piwowar and
Wiktor Jurkowski},
title = {{DNA} microarray integromics analysis platform},
journal = {BioData Min.},
volume = {8},
pages = {18},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0052-6},
doi = {10.1186/S13040-015-0052-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WallerGSPJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Wang15,
author = {Limin Wang},
title = {Mining causal relationships among clinical variables for cancer diagnosis
based on Bayesian analysis},
journal = {BioData Min.},
volume = {8},
pages = {13},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0046-4},
doi = {10.1186/S13040-015-0046-4},
timestamp = {Tue, 09 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/Wang15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WangLCZ15,
author = {Liwei Wang and
Hongfang Liu and
Christopher G. Chute and
Qian Zhu},
title = {Cancer based pharmacogenomics network supported with scientific evidences:
from the view of drug repurposing},
journal = {BioData Min.},
volume = {8},
pages = {9},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0042-8},
doi = {10.1186/S13040-015-0042-8},
timestamp = {Mon, 21 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/WangLCZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WeissZHDSSM15,
author = {Talia Weiss and
Amanda L. Zieselman and
Douglas P. Hill and
Solomon Gilbert Diamond and
Li Shen and
Andrew J. Saykin and
Jason H. Moore},
title = {The role of visualization and 3-D printing in biological data mining},
journal = {BioData Min.},
volume = {8},
pages = {22},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0056-2},
doi = {10.1186/S13040-015-0056-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WeissZHDSSM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WeitschekCF15,
author = {Emanuel Weitschek and
Fabio Cunial and
Giovanni Felici},
title = {{LAF:} Logic Alignment Free and its application to bacterial genomes
classification},
journal = {BioData Min.},
volume = {8},
pages = {39},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0073-1},
doi = {10.1186/S13040-015-0073-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WeitschekCF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WilliamsM15,
author = {Scott M. Williams and
Jason H. Moore},
title = {Lumping versus splitting: the need for biological data mining in precision
medicine},
journal = {BioData Min.},
volume = {8},
pages = {16},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0049-1},
doi = {10.1186/S13040-015-0049-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WilliamsM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Zhang15,
author = {Yuji Zhang},
title = {Network analysis reveals stage-specific changes in zebrafish embryo
development using time course whole transcriptome profiling and prior
biological knowledge},
journal = {BioData Min.},
volume = {8},
pages = {26},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0057-1},
doi = {10.1186/S13040-015-0057-1},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/Zhang15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangCSZM15,
author = {Jian Zhang and
Wenhan Chen and
Pingping Sun and
Xiaowei Zhao and
Zhiqiang Ma},
title = {Prediction of protein solvent accessibility using {PSO-SVR} with multiple
sequence-derived features and weighted sliding window scheme},
journal = {BioData Min.},
volume = {8},
pages = {3},
year = {2015},
url = {https://doi.org/10.1186/s13040-014-0031-3},
doi = {10.1186/S13040-014-0031-3},
timestamp = {Sat, 06 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangCSZM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangX15,
author = {Qiang Zhang and
Yuan Xu},
title = {Motif mining based on network space compression},
journal = {BioData Min.},
volume = {8},
pages = {29},
year = {2015},
url = {https://doi.org/10.1186/s13040-014-0029-x},
doi = {10.1186/S13040-014-0029-X},
timestamp = {Wed, 21 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangX15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangZL15,
author = {Yuji Zhang and
Qian Zhu and
Hongfang Liu},
title = {Next generation informatics for big data in precision medicine era},
journal = {BioData Min.},
volume = {8},
pages = {34},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0064-2},
doi = {10.1186/S13040-015-0064-2},
timestamp = {Mon, 21 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangZL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Aguilar-BonavidesSL14,
author = {Clemente Aguilar{-}Bonavides and
Reinaldo Sanchez{-}Arias and
Cristina Lanzas},
title = {Accurate prediction of major histocompatibility complex class {II}
epitopes by sparse representation via l1-minimization},
journal = {BioData Min.},
volume = {7},
pages = {23},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-23},
doi = {10.1186/1756-0381-7-23},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Aguilar-BonavidesSL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CheJMB14,
author = {Ronglin Che and
John R. Jack and
Alison A. Motsinger{-}Reif and
Chad C. Brown},
title = {An adaptive permutation approach for genome-wide association study:
evaluation and recommendations for use},
journal = {BioData Min.},
volume = {7},
pages = {9},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-9},
doi = {10.1186/1756-0381-7-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CheJMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CiesielskiPWKSHBLPGSARMW14,
author = {Timothy H. Ciesielski and
Sarah A. Pendergrass and
Marquitta J. White and
Nuri Kodaman and
Rafal S. Sobota and
Minjun Huang and
Jacquelaine Bartlett and
Jing Li and
Qinxin Pan and
Jiang Gui and
Scott B. Selleck and
Christopher I. Amos and
Marylyn D. Ritchie and
Jason H. Moore and
Scott M. Williams},
title = {Diverse convergent evidence in the genetic analysis of complex disease:
coordinating omic, informatic, and experimental evidence to better
identify and validate risk factors},
journal = {BioData Min.},
volume = {7},
pages = {10},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-10},
doi = {10.1186/1756-0381-7-10},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CiesielskiPWKSHBLPGSARMW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DarabosWGLWM14,
author = {Christian Darabos and
Marquitta J. White and
Britney E. Graham and
Derek N. Leung and
Scott M. Williams and
Jason H. Moore},
title = {The multiscale backbone of the human phenotype network based on biological
pathways},
journal = {BioData Min.},
volume = {7},
pages = {1},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-1},
doi = {10.1186/1756-0381-7-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DarabosWGLWM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DasguptaSMBM14,
author = {Abhijit Dasgupta and
Silke Szymczak and
Jason H. Moore and
Joan E. Bailey{-}Wilson and
James D. Malley},
title = {Risk estimation using probability machines},
journal = {BioData Min.},
volume = {7},
pages = {2},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-2},
doi = {10.1186/1756-0381-7-2},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/DasguptaSMBM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FloudasUKBV14,
author = {Charalampos S. Floudas and
Nara Um and
M. Kamboh and
M. Michael Barmada and
Shyam Visweswaran},
title = {Identifying genetic interactions associated with late-onset Alzheimer's
disease},
journal = {BioData Min.},
volume = {7},
pages = {35},
year = {2014},
url = {https://doi.org/10.1186/s13040-014-0035-z},
doi = {10.1186/S13040-014-0035-Z},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FloudasUKBV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HeiderDWH14,
author = {Dominik Heider and
Jan Dybowski and
Christoph Wilms and
Daniel Hoffmann},
title = {A simple structure-based model for the prediction of {HIV-1} co-receptor
tropism},
journal = {BioData Min.},
volume = {7},
pages = {14},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-14},
doi = {10.1186/1756-0381-7-14},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HeiderDWH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuPALCTKM14,
author = {Ting Hu and
Qinxin Pan and
Angeline S. Andrew and
Jillian M. Langer and
Michael D. Cole and
Craig R. Tomlinson and
Margaret R. Karagas and
Jason H. Moore},
title = {Functional genomics annotation of a statistical epistasis network
associated with bladder cancer susceptibility},
journal = {BioData Min.},
volume = {7},
pages = {5},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-5},
doi = {10.1186/1756-0381-7-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HuPALCTKM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/IshwaranM14,
author = {Hemant Ishwaran and
James D. Malley},
title = {Synthetic learning machines},
journal = {BioData Min.},
volume = {7},
pages = {28},
year = {2014},
url = {https://doi.org/10.1186/s13040-014-0028-y},
doi = {10.1186/S13040-014-0028-Y},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/IshwaranM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KimLDFPR14,
author = {Do Kyoon Kim and
Ruowang Li and
Scott M. Dudek and
Alex T. Frase and
Sarah A. Pendergrass and
Marylyn D. Ritchie},
title = {Knowledge-driven genomic interactions: an application in ovarian cancer},
journal = {BioData Min.},
volume = {7},
pages = {20},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-20},
doi = {10.1186/1756-0381-7-20},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KimLDFPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Langdon14,
author = {William B. Langdon},
title = {Mycoplasma contamination in the 1000 Genomes Project},
journal = {BioData Min.},
volume = {7},
pages = {3},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-3},
doi = {10.1186/1756-0381-7-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Langdon14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LaurilaAKNHOLL14,
author = {Kirsti Laurila and
Reija Autio and
Lingjia Kong and
Elisa N{\"{a}}rv{\"{a}} and
Samer Hussein and
Timo Otonkoski and
Riitta Lahesmaa and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {Integrative genomics and transcriptomics analysis of human embryonic
and induced pluripotent stem cells},
journal = {BioData Min.},
volume = {7},
pages = {32},
year = {2014},
url = {https://doi.org/10.1186/s13040-014-0032-2},
doi = {10.1186/S13040-014-0032-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LaurilaAKNHOLL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LekmanHAKUCMRMMK14,
author = {Magnus Lekman and
Ola H{\"{o}}ssjer and
Peter C. Andrews and
Henrik K{\"{a}}llberg and
Daniel Uvehag and
Dennis S. Charney and
Husseini K. Manji and
John A. Rush and
Francis J. McMahon and
Jason H. Moore and
Ingrid Kockum},
title = {The genetic interacting landscape of 63 candidate genes in Major Depressive
Disorder: an explorative study},
journal = {BioData Min.},
volume = {7},
pages = {19},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-19},
doi = {10.1186/1756-0381-7-19},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LekmanHAKUCMRMMK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MalleyM14,
author = {James D. Malley and
Jason H. Moore},
title = {Innovation is often unnerving: the door into summer},
journal = {BioData Min.},
volume = {7},
pages = {12},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-12},
doi = {10.1186/1756-0381-7-12},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MalleyM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MalleyM14a,
author = {James D. Malley and
Jason H. Moore},
title = {First complex, then simple},
journal = {BioData Min.},
volume = {7},
pages = {13},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-13},
doi = {10.1186/1756-0381-7-13},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MalleyM14a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MalleyMM14,
author = {James D. Malley and
Karen G. Malley and
Jason H. Moore},
title = {O brave new world that has such machines in it},
journal = {BioData Min.},
volume = {7},
pages = {26},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-26},
doi = {10.1186/1756-0381-7-26},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MalleyMM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MitchellHGBFPBC14,
author = {Sabrina L. Mitchell and
Jacob B. Hall and
Robert J. Goodloe and
Jonathan Boston and
Eric Farber{-}Eger and
Sarah A. Pendergrass and
William S. Bush and
Dana C. Crawford},
title = {Investigating the relationship between mitochondrial genetic variation
and cardiovascular-related traits to develop a framework for mitochondrial
phenome-wide association studies},
journal = {BioData Min.},
volume = {7},
pages = {6},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-6},
doi = {10.1186/1756-0381-7-6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MitchellHGBFPBC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MohammedFN14,
author = {Emad A. Mohammed and
Behrouz Homayoun Far and
Christopher Naugler},
title = {Applications of the MapReduce programming framework to clinical big
data analysis: current landscape and future trends},
journal = {BioData Min.},
volume = {7},
pages = {22},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-22},
doi = {10.1186/1756-0381-7-22},
timestamp = {Thu, 14 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MohammedFN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ParkerCB14,
author = {Douglas Stott Parker and
Eliza Congdon and
Robert M. Bilder},
title = {Hypothesis exploration with visualization of variance},
journal = {BioData Min.},
volume = {7},
pages = {11},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-11},
doi = {10.1186/1756-0381-7-11},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ParkerCB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ParnellBDNCMLHLRO14,
author = {Laurence D. Parnell and
Britt A. Blokker and
Hassan S. Dashti and
Paula{-}Dene Nesbeth and
Brittany Cooper and
Yiyi Ma and
Yu{-}Chi Lee and
Ruixue Hou and
Chao{-}Qiang Lai and
Kris Richardson and
Jos{\'{e}} M. Ordov{\'{a}}s},
title = {CardioGxE, a catalog of gene-environment interactions for cardiometabolic
traits},
journal = {BioData Min.},
volume = {7},
pages = {21},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-21},
doi = {10.1186/1756-0381-7-21},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ParnellBDNCMLHLRO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PouladiCM14,
author = {Nima Pouladi and
Richard Cowper{-}Sallari and
Jason H. Moore},
title = {Combining functional genomics strategies identifies modular heterogeneity
of breast cancer intrinsic subtypes},
journal = {BioData Min.},
volume = {7},
pages = {27},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-27},
doi = {10.1186/1756-0381-7-27},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PouladiCM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RotroffJCCM14,
author = {Daniel M. Rotroff and
John R. Jack and
Nathan Campbell and
Scott Clark and
Alison A. Motsinger{-}Reif},
title = {PGxClean: a quality control {GUI} for the Affymetrix {DMET} chip and
other candidate gene studies with non-biallelic alleles},
journal = {BioData Min.},
volume = {7},
pages = {24},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-24},
doi = {10.1186/1756-0381-7-24},
timestamp = {Wed, 08 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RotroffJCCM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SalemO14,
author = {Saeed Salem and
Cagri Ozcaglar},
title = {Hybrid coexpression link similarity graph clustering for mining biological
modules from multiple gene expression datasets},
journal = {BioData Min.},
volume = {7},
pages = {16},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-16},
doi = {10.1186/1756-0381-7-16},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SalemO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TaeKBG14,
author = {Hongseok Tae and
Enusha Karunasena and
Jasmin H. Bavarva and
Harold R. Garner},
title = {Updating microbial genomic sequences: improving accuracy {\&}
innovation},
journal = {BioData Min.},
volume = {7},
pages = {25},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-25},
doi = {10.1186/1756-0381-7-25},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/TaeKBG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TaoWLZ14,
author = {Cui Tao and
Puqiang Wu and
Yi Luo and
Yuji Zhang},
title = {Linked vaccine adverse event data from {VAERS} for biomedical data
analysis and longitudinal studies},
journal = {BioData Min.},
volume = {7},
pages = {36},
year = {2014},
url = {https://doi.org/10.1186/s13040-014-0036-y},
doi = {10.1186/S13040-014-0036-Y},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/TaoWLZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/UrbanowiczGKM14,
author = {Ryan J. Urbanowicz and
Ambrose Granizo{-}Mackenzie and
Jeff Kiralis and
Jason H. Moore},
title = {A Classification and Characterization of Two-Locus, Pure, Strict,
Epistatic Models for Simulation and Detection},
journal = {BioData Min.},
volume = {7},
pages = {8},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-8},
doi = {10.1186/1756-0381-7-8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/UrbanowiczGKM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WangP14,
author = {Yunli Wang and
Youlian Pan},
title = {Semi-supervised consensus clustering for gene expression data analysis},
journal = {BioData Min.},
volume = {7},
pages = {7},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-7},
doi = {10.1186/1756-0381-7-7},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/WangP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WeitschekFF14,
author = {Emanuel Weitschek and
Giulia Fiscon and
Giovanni Felici},
title = {Supervised {DNA} Barcodes species classification: analysis, comparisons
and results},
journal = {BioData Min.},
volume = {7},
pages = {4},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-4},
doi = {10.1186/1756-0381-7-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WeitschekFF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhouLZ14,
author = {Yan Zhou and
Nan Lin and
Baoxue Zhang},
title = {Erratum: An iteration normalization and test method for differential
expression analysis of RNA-seq data},
journal = {BioData Min.},
volume = {7},
pages = {30},
year = {2014},
url = {https://doi.org/10.1186/s13040-014-0030-4},
doi = {10.1186/S13040-014-0030-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhouLZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhouLZZ14,
author = {Yan Zhou and
Nan Lin and
Yang Zhang and
Baoxue Zhang},
title = {An iteration normalization and test method for differential expression
analysis of RNA-seq data},
journal = {BioData Min.},
volume = {7},
pages = {15},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-15},
doi = {10.1186/1756-0381-7-15},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhouLZZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZieselmanFHAGSSMa14,
author = {Amanda L. Zieselman and
Jonathan M. Fisher and
Ting Hu and
Peter C. Andrews and
Casey S. Greene and
Li Shen and
Andrew J. Saykin and
Jason H. Moore},
title = {Computational genetics analysis of grey matter density in Alzheimer's
disease},
journal = {BioData Min.},
volume = {7},
pages = {17},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-17},
doi = {10.1186/1756-0381-7-17},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZieselmanFHAGSSMa14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZimmermannBLMICOLWHG14,
author = {Philip Zimmermann and
Stefan Bleuler and
Oliver Laule and
Florian Martin and
Nikolai V. Ivanov and
Prisca Campanoni and
Karen Oishi and
Nicolas Lugon{-}Moulin and
Markus Wyss and
Tomas Hruz and
Wilhelm Gruissem},
title = {ExpressionData - {A} public resource of high quality curated datasets
representing gene expression across anatomy, development and experimental
conditions},
journal = {BioData Min.},
volume = {7},
pages = {18},
year = {2014},
url = {https://doi.org/10.1186/1756-0381-7-18},
doi = {10.1186/1756-0381-7-18},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZimmermannBLMICOLWHG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CamioloP13,
author = {Salvatore Camiolo and
Andrea Porceddu},
title = {gff2Sequence, a new user friendly tool for the generation of genomic
sequences},
journal = {BioData Min.},
volume = {6},
pages = {15},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-15},
doi = {10.1186/1756-0381-6-15},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CamioloP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CollinsHWSWM13,
author = {Ryan L. Collins and
Ting Hu and
Christian Wejse and
Giorgio Sirugo and
Scott M. Williams and
Jason H. Moore},
title = {Multifactor dimensionality reduction reveals a three-locus epistatic
interaction associated with susceptibility to pulmonary tuberculosis},
journal = {BioData Min.},
volume = {6},
pages = {4},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-4},
doi = {10.1186/1756-0381-6-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CollinsHWSWM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DaiCBLM13,
author = {Hongying Dai and
Richard J. Charnigo and
Mara Becker and
J. Steven Leeder and
Alison A. Motsinger{-}Reif},
title = {Risk score modeling of multiple gene to gene interactions using aggregated-multifactor
dimensionality reduction},
journal = {BioData Min.},
volume = {6},
pages = {1},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-1},
doi = {10.1186/1756-0381-6-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DaiCBLM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FleurenTVFHRSVA13,
author = {Wilco W. M. Fleuren and
Erik J. M. Toonen and
Stefan Verhoeven and
Raoul Frijters and
Tim Hulsen and
Ton Rullmann and
Ren{\'{e}} C. van Schaik and
Jacob de Vlieg and
Wynand Alkema},
title = {Identification of new biomarker candidates for glucocorticoid induced
insulin resistance using literature mining},
journal = {BioData Min.},
volume = {6},
pages = {2},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-2},
doi = {10.1186/1756-0381-6-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FleurenTVFHRSVA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GrunertL13,
author = {Steffen Grunert and
Dirk Labudde},
title = {Graph representation of high-dimensional alpha-helical membrane protein
data},
journal = {BioData Min.},
volume = {6},
pages = {21},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-21},
doi = {10.1186/1756-0381-6-21},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GrunertL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HoenGM13,
author = {Anne Gatewood Hoen and
Shea N. Gardner and
Jason H. Moore},
title = {Identification of SNPs associated with variola virus virulence},
journal = {BioData Min.},
volume = {6},
pages = {3},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-3},
doi = {10.1186/1756-0381-6-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HoenGM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuangBBCCJJLMMMNPPPRSSWXZZ13,
author = {Xiuzhen Huang and
Barry Bruce and
Alison Buchan and
Clare Bates Congdon and
Carole L. Cramer and
Steven F. Jennings and
Hongmei Jiang and
Zenglu Li and
Gail McClure and
Rick McMullen and
Jason H. Moore and
Bindu Nanduri and
Joan Peckham and
Andy D. Perkins and
Shawn W. Polson and
Bhanu Rekepalli and
Saeed Salem and
Jennifer Specker and
Donald C. Wunsch and
Donghai Xiong and
Shuzhong Zhang and
Zhongming Zhao},
title = {No-boundary thinking in bioinformatics research},
journal = {BioData Min.},
volume = {6},
pages = {19},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-19},
doi = {10.1186/1756-0381-6-19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HuangBBCCJJLMMMNPPPRSSWXZZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JohnLGS13,
author = {Jestinah M. Mahachie John and
Fran{\c{c}}ois Van Lishout and
Elena S. Gusareva and
Kristel Van Steen},
title = {A robustness study of parametric and non-parametric tests in model-based
multifactor dimensionality reduction for epistasis detection},
journal = {BioData Min.},
volume = {6},
pages = {9},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-9},
doi = {10.1186/1756-0381-6-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/JohnLGS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KimLDR13,
author = {Dokyoon Kim and
Ruowang Li and
Scott M. Dudek and
Marylyn D. Ritchie},
title = {{ATHENA:} Identifying interactions between different levels of genomic
data associated with cancer clinical outcomes using grammatical evolution
neural network},
journal = {BioData Min.},
volume = {6},
pages = {23},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-23},
doi = {10.1186/1756-0381-6-23},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KimLDR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MalleyDM13,
author = {James D. Malley and
Abhijit Dasgupta and
Jason H. Moore},
title = {The limits of p-values for biological data mining},
journal = {BioData Min.},
volume = {6},
pages = {10},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-10},
doi = {10.1186/1756-0381-6-10},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MalleyDM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MalleyM13,
author = {James D. Malley and
Jason H. Moore},
title = {The disconnect between classical biostatistics and the biological
data mining community},
journal = {BioData Min.},
volume = {6},
pages = {12},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-12},
doi = {10.1186/1756-0381-6-12},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MalleyM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MitsakakisREW13,
author = {Nicholas Mitsakakis and
Zak Razak and
Michael D. Escobar and
J. Tim Westwood},
title = {Prediction of Drosophila melanogaster gene function using Support
Vector Machines},
journal = {BioData Min.},
volume = {6},
pages = {8},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-8},
doi = {10.1186/1756-0381-6-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MitsakakisREW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MooreR13,
author = {Jason H. Moore and
Marylyn D. Ritchie},
title = {The central role of biological data mining in connecting diverse disciplines},
journal = {BioData Min.},
volume = {6},
pages = {14},
year = {2013},
url = {http://www.biodatamining.org/content/6/1/14},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MooreR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MuttRS13,
author = {Eshita Mutt and
Sudha Rani and
Ramanathan Sowdhamini},
title = {Structural updates of alignment of protein domains and consequences
on evolutionary models of domain superfamilies},
journal = {BioData Min.},
volume = {6},
pages = {20},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-20},
doi = {10.1186/1756-0381-6-20},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MuttRS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NakamuraKOK13,
author = {Munehiro Nakamura and
Yusuke Kajiwara and
Atsushi Otsuka and
Haruhiko Kimura},
title = {{LVQ-SMOTE} - Learning Vector Quantization based Synthetic Minority
Over-sampling Technique for biomedical data},
journal = {BioData Min.},
volume = {6},
pages = {16},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-16},
doi = {10.1186/1756-0381-6-16},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/NakamuraKOK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OkserPA13,
author = {Sebastian Okser and
Tapio Pahikkala and
Tero Aittokallio},
title = {Genetic variants and their interactions in disease risk prediction
- machine learning and network perspectives},
journal = {BioData Min.},
volume = {6},
pages = {5},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-5},
doi = {10.1186/1756-0381-6-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/OkserPA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PavlopoulosOISM0AI13,
author = {Georgios A. Pavlopoulos and
Anastasis Oulas and
Ernesto Iacucci and
Alejandro Sifrim and
Yves Moreau and
Reinhard Schneider and
Jan Aerts and
Ioannis Iliopoulos},
title = {Unraveling genomic variation from next generation sequencing data},
journal = {BioData Min.},
volume = {6},
pages = {13},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-13},
doi = {10.1186/1756-0381-6-13},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PavlopoulosOISM0AI13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PendergrassFWWKMR13,
author = {Sarah A. Pendergrass and
Alex T. Frase and
John R. Wallace and
Daniel Wolfe and
Neerja Katiyar and
Carrie Moore and
Marylyn D. Ritchie},
title = {Genomic analyses with biofilter 2.0: knowledge driven filtering, annotation,
and model development},
journal = {BioData Min.},
volume = {6},
pages = {25},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-25},
doi = {10.1186/1756-0381-6-25},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PendergrassFWWKMR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PetrochilosSGA13,
author = {Deanna Petrochilos and
Ali Shojaie and
John H. Gennari and
Neil F. Abernethy},
title = {Using random walks to identify cancer-associated modules in expression
data},
journal = {BioData Min.},
volume = {6},
pages = {17},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-17},
doi = {10.1186/1756-0381-6-17},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PetrochilosSGA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PreepremG13,
author = {Thanawadee Preeprem and
Greg Gibson},
title = {An association-adjusted consensus deleterious scheme to classify homozygous
Mis-sense mutations for personal genome interpretation},
journal = {BioData Min.},
volume = {6},
pages = {24},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-24},
doi = {10.1186/1756-0381-6-24},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PreepremG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RosenbaumJDZ13,
author = {Lars Rosenbaum and
Andreas Jahn and
Alexander D{\"{o}}rr and
Andreas Zell},
title = {Optimization and visualization of the edge weights in optimal assignment
methods for virtual screening},
journal = {BioData Min.},
volume = {6},
pages = {7},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-7},
doi = {10.1186/1756-0381-6-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RosenbaumJDZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SuAKB13,
author = {Chengwei Su and
Angeline S. Andrew and
Margaret R. Karagas and
Mark E. Borsuk},
title = {Using Bayesian networks to discover relations between genes, environment,
and disease},
journal = {BioData Min.},
volume = {6},
pages = {6},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-6},
doi = {10.1186/1756-0381-6-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SuAKB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Taguchi13,
author = {Y{-}h. Taguchi},
title = {MicroRNA-mediated regulation of target genes in several brain regions
is correlated to both microRNA-targeting-specific promoter methylation
and differential microRNA expression},
journal = {BioData Min.},
volume = {6},
pages = {11},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-11},
doi = {10.1186/1756-0381-6-11},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Taguchi13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WilliamsM13,
author = {Scott M. Williams and
Jason H. Moore},
title = {Big Data analysis on autopilot?},
journal = {BioData Min.},
volume = {6},
pages = {22},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-22},
doi = {10.1186/1756-0381-6-22},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WilliamsM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WolfeDRP13,
author = {Daniel Wolfe and
Scott M. Dudek and
Marylyn D. Ritchie and
Sarah A. Pendergrass},
title = {Visualizing genomic information across chromosomes with PhenoGram},
journal = {BioData Min.},
volume = {6},
pages = {18},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-18},
doi = {10.1186/1756-0381-6-18},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WolfeDRP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AbediZYF12,
author = {Vida Abedi and
Ramin Zand and
Mohammed Yeasin and
Fazle Faisal},
title = {An automated framework for hypotheses generation using literature},
journal = {BioData Min.},
volume = {5},
pages = {13},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-13},
doi = {10.1186/1756-0381-5-13},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AbediZYF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Andrade-NavarroPP12,
author = {Miguel A. Andrade{-}Navarro and
Gareth A. Palidwor and
Carolina Perez{-}Iratxeta},
title = {Peer2ref: a peer-reviewer finding web tool that uses author disambiguation},
journal = {BioData Min.},
volume = {5},
pages = {14},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-14},
doi = {10.1186/1756-0381-5-14},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Andrade-NavarroPP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BrownHMKMM12,
author = {Chad C. Brown and
Tammy M. Havener and
Marisa Wong Medina and
Ronald M. Krauss and
Howard L. McLeod and
Alison A. Motsinger{-}Reif},
title = {Multivariate methods and software for association mapping in dose-response
genome-wide association studies},
journal = {BioData Min.},
volume = {5},
pages = {21},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-21},
doi = {10.1186/1756-0381-5-21},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BrownHMKMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BulowBRBH12,
author = {Lorenz B{\"{u}}low and
Julio C. Bol{\'{\i}}var and
Jonas Ruhe and
Yuri Brill and
Reinhard Hehl},
title = {'MicroRNA Targets', a new AthaMap web-tool for genome-wide identification
of miRNA targets in Arabidopsis thaliana},
journal = {BioData Min.},
volume = {5},
pages = {7},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-7},
doi = {10.1186/1756-0381-5-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BulowBRBH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Cruz-CanoLL12,
author = {Raul Cruz{-}Cano and
Mei{-}Ling Ting Lee and
Ming{-}Ying Leung},
title = {Logic minimization and rule extraction for identification of functional
sites in molecular sequences},
journal = {BioData Min.},
volume = {5},
pages = {10},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-10},
doi = {10.1186/1756-0381-5-10},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Cruz-CanoLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DaiBBLGM12,
author = {Hongying Dai and
Madhusudan Bhandary and
Mara Becker and
J. Steven Leeder and
Roger Gaedigk and
Alison A. Motsinger{-}Reif},
title = {Global tests of P-values for multifactor dimensionality reduction
models in selection of optimal number of target genes},
journal = {BioData Min.},
volume = {5},
pages = {3},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-3},
doi = {10.1186/1756-0381-5-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DaiBBLGM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GonzalezCDD12,
author = {Ignacio Gonz{\'{a}}lez and
Kim{-}Anh L{\^{e}} Cao and
Melissa J. Davis and
S{\'{e}}bastien D{\'{e}}jean},
title = {Visualising associations between paired 'omics' data sets},
journal = {BioData Min.},
volume = {5},
pages = {19},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-19},
doi = {10.1186/1756-0381-5-19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GonzalezCDD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GuiTB12,
author = {Jiang Gui and
Tor D. Tosteson and
Mark E. Borsuk},
title = {Weighted multiple testing procedures for genomic studies},
journal = {BioData Min.},
volume = {5},
pages = {4},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-4},
doi = {10.1186/1756-0381-5-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GuiTB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KimAAFWHRAM12,
author = {Nora Kim and
Peter C. Andrews and
Folkert W. Asselbergs and
H. Robert Frost and
Scott M. Williams and
Brent T. Harris and
Cynthia Read and
Kathleen D. Askland and
Jason H. Moore},
title = {Gene ontology analysis of pairwise genetic associations in two genome-wide
studies of sporadic {ALS}},
journal = {BioData Min.},
volume = {5},
pages = {9},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-9},
doi = {10.1186/1756-0381-5-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KimAAFWHRAM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiGWSCT12,
author = {Li Li and
Yang Guo and
Wenwu Wu and
Youyi Shi and
Jian Cheng and
Shiheng Tao},
title = {A comparison and evaluation of five biclustering algorithms by quantifying
goodness of biclusters for gene expression data},
journal = {BioData Min.},
volume = {5},
pages = {8},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-8},
doi = {10.1186/1756-0381-5-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiGWSCT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MagdeldinYLMYEZXFYSY12,
author = {Sameh Magdeldin and
Yutaka Yoshida and
Huiping Li and
Yoshitaka Maeda and
Munesuke Yokoyama and
Shymaa Enany and
Ying Zhang and
Bo Xu and
Hidehiko Fujinaka and
Eishin Yaoita and
Sei Sasaki and
Tadashi Yamamoto},
title = {Murine colon proteome and characterization of the protein pathways},
journal = {BioData Min.},
volume = {5},
pages = {11},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-11},
doi = {10.1186/1756-0381-5-11},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MagdeldinYLMYEZXFYSY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PendergrassDCR12,
author = {Sarah A. Pendergrass and
Scott M. Dudek and
Dana C. Crawford and
Marylyn D. Ritchie},
title = {Visually integrating and exploring high throughput Phenome-Wide Association
Study (PheWAS) results using PheWAS-View},
journal = {BioData Min.},
volume = {5},
pages = {5},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-5},
doi = {10.1186/1756-0381-5-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PendergrassDCR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Satoh12,
author = {Jun{-}ichi Satoh},
title = {Molecular network analysis of human microRNA targetome: from cancers
to Alzheimer's disease},
journal = {BioData Min.},
volume = {5},
pages = {17},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-17},
doi = {10.1186/1756-0381-5-17},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Satoh12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SoldatosOSBPWSS12,
author = {Theodoros G. Soldatos and
Se{\'{a}}n I. O'Donoghue and
Venkata P. Satagopam and
Adriano Barbosa{-}Silva and
Georgios A. Pavlopoulos and
Ana Carolina Wanderley{-}Nogueira and
Nina da Mota Soares{-}Cavalcanti and
Reinhard Schneider},
title = {Caipirini: using gene sets to rank literature},
journal = {BioData Min.},
volume = {5},
pages = {1},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-1},
doi = {10.1186/1756-0381-5-1},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/SoldatosOSBPWSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/StokesV12,
author = {Matthew E. Stokes and
Shyam Visweswaran},
title = {Application of a spatially-weighted Relief algorithm for ranking genetic
predictors of disease},
journal = {BioData Min.},
volume = {5},
pages = {20},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-20},
doi = {10.1186/1756-0381-5-20},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/StokesV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TuikkalaVSNA12,
author = {Johannes Tuikkala and
Heidi V{\"{a}}h{\"{a}}maa and
Pekka Salmela and
Olli Nevalainen and
Tero Aittokallio},
title = {A multilevel layout algorithm for visualizing physical and genetic
interaction networks, with emphasis on their modular organization},
journal = {BioData Min.},
volume = {5},
pages = {2},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-2},
doi = {10.1186/1756-0381-5-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/TuikkalaVSNA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TurenneTIYIVDH12,
author = {Nicolas Turenne and
Evgeny S. Tiys and
Vladimir A. Ivanisenko and
Nikolay Yudin and
Elena Ignatieva and
Damien Valour and
S{\'{e}}verine A. Degrelle and
Isabelle Hue},
title = {Finding biomarkers in non-model species: literature mining of transcription
factors involved in bovine embryo development},
journal = {BioData Min.},
volume = {5},
pages = {12},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-12},
doi = {10.1186/1756-0381-5-12},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/TurenneTIYIVDH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/UrbanowiczKFM12,
author = {Ryan J. Urbanowicz and
Jeff Kiralis and
Jonathan M. Fisher and
Jason H. Moore},
title = {Predicting the difficulty of pure, strict, epistatic models: metrics
for simulated model selection},
journal = {BioData Min.},
volume = {5},
pages = {15},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-15},
doi = {10.1186/1756-0381-5-15},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/UrbanowiczKFM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/UrbanowiczKSHFM12,
author = {Ryan J. Urbanowicz and
Jeff Kiralis and
Nicholas A. Sinnott{-}Armstrong and
Tamra Heberling and
Jonathan M. Fisher and
Jason H. Moore},
title = {{GAMETES:} a fast, direct algorithm for generating pure, strict, epistatic
models with random architectures},
journal = {BioData Min.},
volume = {5},
pages = {16},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-16},
doi = {10.1186/1756-0381-5-16},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/UrbanowiczKSHFM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WirthBB12,
author = {Henry Wirth and
Martin von Bergen and
Hans Binder},
title = {Mining {SOM} expression portraits: feature selection and integrating
concepts of molecular function},
journal = {BioData Min.},
volume = {5},
pages = {18},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-18},
doi = {10.1186/1756-0381-5-18},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WirthBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/YuGWVWMAS12,
author = {Xiaoqing Yu and
Kishore Guda and
Joseph Willis and
Martina Veigl and
Zhenghe Wang and
Sanford Markowitz and
Mark D. Adams and
Shuying Sun},
title = {How do alignment programs perform on sequencing data with varying
qualities and from repetitive regions?},
journal = {BioData Min.},
volume = {5},
pages = {6},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-6},
doi = {10.1186/1756-0381-5-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/YuGWVWMAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/CeruttiBGG11,
author = {Francesco Cerutti and
Luigi Bertolotti and
Tony L. Goldberg and
Mario Giacobini},
title = {Taxon ordering in phylogenetic trees by means of evolutionary algorithms},
journal = {BioData Min.},
volume = {4},
pages = {20},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-20},
doi = {10.1186/1756-0381-4-20},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/CeruttiBGG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiraHD11,
author = {Camelia Chira and
Dragos Horvath and
D. Dumitrescu},
title = {Hill-Climbing search and diversification within an evolutionary approach
to protein structure prediction},
journal = {BioData Min.},
volume = {4},
pages = {23},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-23},
doi = {10.1186/1756-0381-4-23},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiraHD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DybowskiRHPVHH11,
author = {Jan Nikolaj Dybowski and
Mona Riemenschneider and
Sascha Hauke and
Martin Pyka and
Jens Verheyen and
Daniel Hoffmann and
Dominik Heider},
title = {Improved Bevirimat resistance prediction by combination of structural
and sequence-based classifiers},
journal = {BioData Min.},
volume = {4},
pages = {26},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-26},
doi = {10.1186/1756-0381-4-26},
timestamp = {Mon, 28 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/DybowskiRHPVHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/EcheverriaFPMP11,
author = {Pablo C. Echeverr{\'{\i}}a and
Fedor Forafonov and
Deo P. Pandey and
Guillaume M{\"{u}}hlebach and
Didier Picard},
title = {Detection of changes in gene regulatory patterns, elicited by perturbations
of the Hsp90 molecular chaperone complex, by visualizing multiple
experiments with an animation},
journal = {BioData Min.},
volume = {4},
pages = {15},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-15},
doi = {10.1186/1756-0381-4-15},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/EcheverriaFPMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ErtenBEK11,
author = {Sinan Erten and
G{\"{u}}rkan Bebek and
Rob M. Ewing and
Mehmet Koyut{\"{u}}rk},
title = {{DADA:} Degree-Aware Algorithms for Network-Based Disease Gene Prioritization},
journal = {BioData Min.},
volume = {4},
pages = {19},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-19},
doi = {10.1186/1756-0381-4-19},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ErtenBEK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GradyTR11,
author = {Benjamin J. Grady and
Eric Torstenson and
Marylyn D. Ritchie},
title = {The effects of linkage disequilibrium in large scale {SNP} datasets
for {MDR}},
journal = {BioData Min.},
volume = {4},
pages = {11},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-11},
doi = {10.1186/1756-0381-4-11},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GradyTR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GraysonA11,
author = {Britney L. Grayson and
Thomas M. Aune},
title = {A comparison of genomic copy number calls by Partek Genomics Suite,
Genotyping Console and Birdsuite algorithms to quantitative {PCR}},
journal = {BioData Min.},
volume = {4},
pages = {8},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-8},
doi = {10.1186/1756-0381-4-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GraysonA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HeiderH11,
author = {Dominik Heider and
Daniel Hoffmann},
title = {Interpol: An {R} package for preprocessing of protein sequences},
journal = {BioData Min.},
volume = {4},
pages = {16},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-16},
doi = {10.1186/1756-0381-4-16},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HeiderH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HimmelsteinGM11,
author = {Daniel S. Himmelstein and
Casey S. Greene and
Jason H. Moore},
title = {Evolving hard problems: Generating human genetics datasets with a
complex etiology},
journal = {BioData Min.},
volume = {4},
pages = {21},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-21},
doi = {10.1186/1756-0381-4-21},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HimmelsteinGM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KilpinenOK11,
author = {Sami Kilpinen and
Kalle A. Ojala and
Olli{-}P. Kallioniemi},
title = {Alignment of gene expression profiles from test samples against a
reference database: New method for context-specific interpretation
of microarray data},
journal = {BioData Min.},
volume = {4},
pages = {5},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-5},
doi = {10.1186/1756-0381-4-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KilpinenOK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LehrYZJR11,
author = {Thorsten Lehr and
Jing Yuan and
Dirk Zeumer and
Supriya Jayadev and
Marylyn D. Ritchie},
title = {Rule based classifier for the analysis of gene-gene and gene-environment
interactions in genetic association studies},
journal = {BioData Min.},
volume = {4},
pages = {4},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-4},
doi = {10.1186/1756-0381-4-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LehrYZJR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MartinTBN11,
author = {Christian W. Martin and
Anika Tauchen and
Anke Becker and
Tim W. Nattkemper},
title = {A Normalized Tree Index for identification of correlated clinical
parameters in microarray experiments},
journal = {BioData Min.},
volume = {4},
pages = {2},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-2},
doi = {10.1186/1756-0381-4-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/MartinTBN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NepomucenoLA11,
author = {Juan A. Nepomuceno and
Alicia Troncoso Lora and
Jes{\'{u}}s S. Aguilar{-}Ruiz},
title = {Biclustering of Gene Expression Data by Correlation-Based Scatter
Search},
journal = {BioData Min.},
volume = {4},
pages = {3},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-3},
doi = {10.1186/1756-0381-4-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/NepomucenoLA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Nicolas11,
author = {Guillaume G. Nicolas},
title = {Detection of putative new mutacins by bioinformatic analysis using
available web tools},
journal = {BioData Min.},
volume = {4},
pages = {22},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-22},
doi = {10.1186/1756-0381-4-22},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Nicolas11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PavlopoulosSMSKASB11,
author = {Georgios A. Pavlopoulos and
Maria Secrier and
Charalampos N. Moschopoulos and
Theodoros G. Soldatos and
Sophia Kossida and
Jan Aerts and
Reinhard Schneider and
Pantelis G. Bagos},
title = {Using graph theory to analyze biological networks},
journal = {BioData Min.},
volume = {4},
pages = {10},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-10},
doi = {10.1186/1756-0381-4-10},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/PavlopoulosSMSKASB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SatohT11,
author = {Jun{-}ichi Satoh and
Hiroko Tabunoki},
title = {Comprehensive analysis of human microRNA target networks},
journal = {BioData Min.},
volume = {4},
pages = {17},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-17},
doi = {10.1186/1756-0381-4-17},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SatohT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SchillingCS11,
author = {Ruben Schilling and
Ivan G. Costa and
Alexander Schliep},
title = {pGQL: {A} probabilistic graphical query language for gene expression
time courses},
journal = {BioData Min.},
volume = {4},
pages = {9},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-9},
doi = {10.1186/1756-0381-4-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SchillingCS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/SunHYHL11,
author = {Shuying Sun and
Yi{-}Wen Huang and
Pearlly Yan and
Tim Hui{-}Ming Huang and
Shili Lin},
title = {Preprocessing differential methylation hybridization microarray data},
journal = {BioData Min.},
volume = {4},
pages = {13},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-13},
doi = {10.1186/1756-0381-4-13},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/SunHYHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/UrbachM11,
author = {Davnah Urbach and
Jason H. Moore},
title = {The spatial dimension in biological data mining},
journal = {BioData Min.},
volume = {4},
pages = {6},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-6},
doi = {10.1186/1756-0381-4-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/UrbachM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/UrbachM11a,
author = {Davnah Urbach and
Jason H. Moore},
title = {Data mining and the evolution of biological complexity},
journal = {BioData Min.},
volume = {4},
pages = {7},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-7},
doi = {10.1186/1756-0381-4-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/UrbachM11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/UrbachM11b,
author = {Davnah Urbach and
Jason H. Moore},
title = {Mining beyond the exome},
journal = {BioData Min.},
volume = {4},
pages = {14},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-14},
doi = {10.1186/1756-0381-4-14},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/UrbachM11b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/UrbachM11c,
author = {Davnah Urbach and
Jason H. Moore},
title = {Mining the diseasome},
journal = {BioData Min.},
volume = {4},
pages = {25},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-25},
doi = {10.1186/1756-0381-4-25},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/UrbachM11c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/VanneschiFMAPG11,
author = {Leonardo Vanneschi and
Antonella Farinaccio and
Giancarlo Mauri and
Marco Antoniotti and
Paolo Provero and
Mario Giacobini},
title = {A comparison of machine learning techniques for survival prediction
in breast cancer},
journal = {BioData Min.},
volume = {4},
pages = {12},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-12},
doi = {10.1186/1756-0381-4-12},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/VanneschiFMAPG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/VassuraLMMAFC11,
author = {Marco Vassura and
Pietro di Lena and
Luciano Margara and
Maria Mirto and
Giovanni Aloisio and
Piero Fariselli and
Rita Casadio},
title = {Blurring contact maps of thousands of proteins: what we can learn
by reconstructing 3D structure},
journal = {BioData Min.},
volume = {4},
pages = {1},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-1},
doi = {10.1186/1756-0381-4-1},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/VassuraLMMAFC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WinhamM11,
author = {Stacey J. Winham and
Alison A. Motsinger{-}Reif},
title = {An {R} package implementation of multifactor dimensionality reduction},
journal = {BioData Min.},
volume = {4},
pages = {24},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-24},
doi = {10.1186/1756-0381-4-24},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/WinhamM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhengJHZGCZL11,
author = {Guang Zheng and
Miao Jiang and
Xiaojuan He and
Jing Zhao and
Hongtao Guo and
Gao Chen and
Qinglin Zha and
Aiping Lu},
title = {Discrete derivative: a data slicing algorithm for exploration of sharing
biological networks between rheumatoid arthritis and coronary heart
disease},
journal = {BioData Min.},
volume = {4},
pages = {18},
year = {2011},
url = {https://doi.org/10.1186/1756-0381-4-18},
doi = {10.1186/1756-0381-4-18},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhengJHZGCZL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/DuanPSZN10,
author = {Fenghai Duan and
Mark A. Pauley and
Eliot R. Spindel and
Li Zhang and
Robert B. Norgren},
title = {Large scale analysis of positional effects of single-base mismatches
on microarray gene expression data},
journal = {BioData Min.},
volume = {3},
pages = {2},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-2},
doi = {10.1186/1756-0381-3-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/DuanPSZN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/EnrothAWK10,
author = {Stefan Enroth and
Robin Andersson and
Claes Wadelius and
Jan Komorowski},
title = {{SICTIN:} Rapid footprinting of massively parallel sequencing data},
journal = {BioData Min.},
volume = {3},
pages = {4},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-4},
doi = {10.1186/1756-0381-3-4},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/EnrothAWK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LeiR10,
author = {Chengwei Lei and
Jianhua Ruan},
title = {A particle swarm optimization-based algorithm for finding gapped motifs},
journal = {BioData Min.},
volume = {3},
pages = {9},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-9},
doi = {10.1186/1756-0381-3-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LeiR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MisawaK10,
author = {Kazuharu Misawa and
Reiko F. Kikuno},
title = {GeneWaltz-A new method for reducing the false positives of gene finding},
journal = {BioData Min.},
volume = {3},
pages = {6},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-6},
doi = {10.1186/1756-0381-3-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MisawaK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Motsinger-ReifDWH10,
author = {Alison A. Motsinger{-}Reif and
Sushamna Deodhar and
Stacey J. Winham and
Nicholas E. Hardison},
title = {Grammatical evolution decision trees for detecting gene-gene interactions},
journal = {BioData Min.},
volume = {3},
pages = {8},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-8},
doi = {10.1186/1756-0381-3-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Motsinger-ReifDWH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/NelsonASMWG10,
author = {Rex T. Nelson and
Shulamit Avraham and
Randy C. Shoemaker and
Gregory D. May and
Doreen Ware and
Damian Gessler},
title = {Applications and methods utilizing the Simple Semantic Web Architecture
and Protocol {(SSWAP)} for bioinformatics resource discovery and disparate
data and service integration},
journal = {BioData Min.},
volume = {3},
pages = {3},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-3},
doi = {10.1186/1756-0381-3-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/NelsonASMWG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PavlopoulosSBS10,
author = {Georgios A. Pavlopoulos and
Theodoros G. Soldatos and
Adriano Barbosa{-}Silva and
Reinhard Schneider},
title = {A reference guide for tree analysis and visualization},
journal = {BioData Min.},
volume = {3},
pages = {1},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-1},
doi = {10.1186/1756-0381-3-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PavlopoulosSBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PendergrassDCR10,
author = {Sarah A. Pendergrass and
Scott M. Dudek and
Dana C. Crawford and
Marylyn D. Ritchie},
title = {Synthesis-View: visualization and interpretation of {SNP} association
results for multi-cohort, multi-phenotype data and meta-analysis},
journal = {BioData Min.},
volume = {3},
pages = {10},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-10},
doi = {10.1186/1756-0381-3-10},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PendergrassDCR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/RollinsT10,
author = {Derrick K. Rollins and
AiLing Teh},
title = {An extended data mining method for identifying differentially expressed
assay-specific signatures in functional genomic studies},
journal = {BioData Min.},
volume = {3},
pages = {11},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-11},
doi = {10.1186/1756-0381-3-11},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/RollinsT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Sharma10,
author = {Abhay Sharma},
title = {Transcriptome bioinformatic analysis identifies potential therapeutic
mechanism of pentylenetetrazole in down syndrome},
journal = {BioData Min.},
volume = {3},
pages = {7},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-7},
doi = {10.1186/1756-0381-3-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Sharma10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/TurnerDR10,
author = {Stephen D. Turner and
Scott M. Dudek and
Marylyn D. Ritchie},
title = {{ATHENA:} {A} knowledge-based hybrid backpropagation-grammatical evolution
neural network algorithm for discovering epistasis among quantitative
trait Loci},
journal = {BioData Min.},
volume = {3},
pages = {5},
year = {2010},
url = {https://doi.org/10.1186/1756-0381-3-5},
doi = {10.1186/1756-0381-3-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/TurnerDR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ArehartGWHM09,
author = {Eric Arehart and
Scott Gleim and
Bill C. White and
John Hwa and
Jason H. Moore},
title = {Multifactor dimensionality reduction analysis identifies specific
nucleotide patterns promoting genetic polymorphisms},
journal = {BioData Min.},
volume = {2},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-2},
doi = {10.1186/1756-0381-2-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ArehartGWHM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AyadiEH09,
author = {Wassim Ayadi and
Mourad Elloumi and
Jin{-}Kao Hao},
title = {A biclustering algorithm based on a Bicluster Enumeration Tree: application
to {DNA} microarray data},
journal = {BioData Min.},
volume = {2},
pages = {9},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-9},
doi = {10.1186/1756-0381-2-9},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/AyadiEH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BayeTAG09,
author = {Tesfaye M. Baye and
Hemant K. Tiwari and
David B. Allison and
Rodney C. Go},
title = {Database mining for selection of {SNP} markers useful in admixture
mapping},
journal = {BioData Min.},
volume = {2},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-1},
doi = {10.1186/1756-0381-2-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BayeTAG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/BushCTR09,
author = {William S. Bush and
Guanhua Chen and
Eric Torstenson and
Marylyn D. Ritchie},
title = {LD-Spline: Mapping SNPs on genotyping platforms to genomic regions
using patterns of linkage disequilibrium},
journal = {BioData Min.},
volume = {2},
pages = {7},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-7},
doi = {10.1186/1756-0381-2-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/BushCTR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/FayechEL09,
author = {Sondes Fayech and
Nadia Essoussi and
Mohamed Limam},
title = {Partitioning clustering algorithms for protein sequence data sets},
journal = {BioData Min.},
volume = {2},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-3},
doi = {10.1186/1756-0381-2-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/FayechEL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GreenePKM09,
author = {Casey S. Greene and
Nadia M. Penrod and
Jeff Kiralis and
Jason H. Moore},
title = {Spatially Uniform ReliefF {(SURF)} for computationally-efficient filtering
of gene-gene interactions},
journal = {BioData Min.},
volume = {2},
pages = {5},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-5},
doi = {10.1186/1756-0381-2-5},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GreenePKM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Likic09,
author = {Vladimir A. Likic},
title = {Extraction of pure components from overlapped signals in gas chromatography-mass
spectrometry {(GC-MS)}},
journal = {BioData Min.},
volume = {2},
pages = {6},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-6},
doi = {10.1186/1756-0381-2-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Likic09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Schulz-TrieglaffMRSTU09,
author = {Ole Schulz{-}Trieglaff and
Egidijus Machtejevas and
Knut Reinert and
Hartmut Schl{\"{u}}ter and
Joachim Thiemann and
Klaus Unger},
title = {Statistical quality assessment and outlier detection for liquid chromatography-mass
spectrometry experiments},
journal = {BioData Min.},
volume = {2},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-4},
doi = {10.1186/1756-0381-2-4},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Schulz-TrieglaffMRSTU09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ShameerNGS09,
author = {Khader Shameer and
Paramasivam Nagarajan and
Kumar Gaurav and
Ramanathan Sowdhamini},
title = {3PFDB - {A} database of Best Representative {PSSM} Profiles (BRPs)
of Protein Families generated using a novel data mining approach},
journal = {BioData Min.},
volume = {2},
pages = {8},
year = {2009},
url = {https://doi.org/10.1186/1756-0381-2-8},
doi = {10.1186/1756-0381-2-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ShameerNGS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Aguilar-RuizMR08,
author = {Jes{\'{u}}s S. Aguilar{-}Ruiz and
Jason H. Moore and
Marylyn D. Ritchie},
title = {Filling the gap between biology and computer science},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-1},
doi = {10.1186/1756-0381-1-1},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Aguilar-RuizMR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/AritaS08,
author = {Masanori Arita and
Kazuhiro Suwa},
title = {Search extension transforms Wiki into a relational system: {A} case
for flavonoid metabolite database},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-7},
doi = {10.1186/1756-0381-1-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/AritaS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ArmananzasISSFLPBRBL08,
author = {Rub{\'{e}}n Arma{\~{n}}anzas and
I{\~{n}}aki Inza and
Roberto Santana and
Yvan Saeys and
Jose Luis Flores and
Jos{\'{e}} Antonio Lozano and
Yves Van de Peer and
Rosa Blanco and
V{\'{\i}}ctor Robles and
Concha Bielza and
Pedro Larra{\~{n}}aga},
title = {A review of estimation of distribution algorithms in bioinformatics},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-6},
doi = {10.1186/1756-0381-1-6},
timestamp = {Wed, 28 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ArmananzasISSFLPBRBL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KullV08,
author = {Meelis Kull and
Jaak Vilo},
title = {Fast approximate hierarchical clustering using similarity heuristics},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-9},
doi = {10.1186/1756-0381-1-9},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KullV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/KumarasamyWVK08,
author = {Saravana K. Kumarasamy and
Yunshi Wang and
Vignesh Viswanathan and
Rachel S. Kraut},
title = {Multivariate profiling of neurodegeneration-associated changes in
a subcellular compartment of neurons via image processing},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-10},
doi = {10.1186/1756-0381-1-10},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/KumarasamyWVK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/MaCSBKKN08,
author = {Qicheng Ma and
Gung{-}Wei Chirn and
Joseph D. Szustakowski and
Adel Bakhtiarova and
Penelope A. Kosinski and
Daniel M. Kemp and
Nanguneri Nirmala},
title = {Uncovering mechanisms of transcriptional regulations by systematic
mining of cis regulatory elements with gene expression profiles},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-4},
doi = {10.1186/1756-0381-1-4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/MaCSBKKN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/McEachinKSM08,
author = {Richard C. McEachin and
Benjamin J. Keller and
Erika F. H. Saunders and
Melvin G. McInnis},
title = {Modeling gene-by-environment interaction in comorbid depression with
alcohol use disorders via an integrated bioinformatics approach},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-2},
doi = {10.1186/1756-0381-1-2},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/McEachinKSM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Motsinger-ReifR08,
author = {Alison A. Motsinger{-}Reif and
Marylyn D. Ritchie},
title = {Neural networks for genetic epidemiology: past, present, and future},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-3},
doi = {10.1186/1756-0381-1-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Motsinger-ReifR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OvaskaLH08,
author = {Kristian Ovaska and
Marko Laakso and
Sampsa Hautaniemi},
title = {Fast Gene Ontology based clustering for microarray experiments},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-11},
doi = {10.1186/1756-0381-1-11},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/OvaskaLH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/PavlopoulosWS08,
author = {Georgios A. Pavlopoulos and
Anna{-}Lynn Wegener and
Reinhard Schneider},
title = {A survey of visualization tools for biological network analysis},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-12},
doi = {10.1186/1756-0381-1-12},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/PavlopoulosWS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ReverterID08,
author = {Antonio Reverter and
Aaron Ingham and
Brian P. Dalrymple},
title = {Mining tissue specificity, gene connectivity and disease association
to reveal a set of genes that modify the action of disease causing
genes},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-8},
doi = {10.1186/1756-0381-1-8},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ReverterID08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WangZA08,
author = {Haiying Wang and
Huiru Zheng and
Francisco Azuaje},
title = {Clustering-based approaches to {SAGE} data mining},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-5},
doi = {10.1186/1756-0381-1-5},
timestamp = {Wed, 04 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/WangZA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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