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@article{DBLP:journals/jib/AlamHMKSPH19,
  author    = {Saruar Alam and
               Md. Kamrul Hasan and
               Omar Hamza Bin Manjur and
               Akib Mahmud Khan and
               Zinat Sharmin and
               Mahmud Arif Pavel and
               Md. Faruk Hossain},
  title     = {Predicting and Designing Epitope Ensemble Vaccines against {HTLV-1}},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {4},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0051},
  doi       = {10.1515/jib-2018-0051},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AlamHMKSPH19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Allmer19,
  author    = {Jens Allmer},
  title     = {Towards an Internet of Science},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0024},
  doi       = {10.1515/jib-2019-0024},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Allmer19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AsatiMSS19,
  author    = {Nimisha Asati and
               Abhinav Mishra and
               Ankita Shukla and
               Tiratha Raj Singh},
  title     = {Gene Expression Studies to Identify Significant Genes in AR, MTOR,
               {MAPK} Pathways and their Overlapping Regulatory Role in Prostate
               Cancer},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0080},
  doi       = {10.1515/jib-2018-0080},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AsatiMSS19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChenHT19,
  author    = {Ming Chen and
               Ralf Hofest{\"{a}}dt and
               Jan Taubert},
  title     = {Integrative Bioinformatics: History and Future},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-2001},
  doi       = {10.1515/jib-2019-2001},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ChenHT19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Fdez-RiverolaR19,
  author    = {Florentino Fdez{-}Riverola and
               Miguel Rocha},
  title     = {Selected Extended Papers of the 12th International Conference on Practical
               Applications of Computational Biology and Bioinformatics {(PACBB)}},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {1},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0004},
  doi       = {10.1515/jib-2019-0004},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Fdez-RiverolaR19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FriedrichsS19,
  author    = {Marcel Friedrichs and
               Alban Shoshi},
  title     = {History and Future of {KALIS:} Towards Computer-assisted Decision
               Making in Prescriptive Medicine},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0011},
  doi       = {10.1515/jib-2019-0011},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FriedrichsS19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FriedrichsSCISS19,
  author    = {Marcel Friedrichs and
               Alban Shoshi and
               Piotr Chmura and
               Jon C. Ison and
               Veit Schw{\"{a}}mmle and
               Falk Schreiber and
               Ralf Hofest{\"{a}}dt and
               Bj{\"{o}}rn Sommer},
  title     = {JIB.tools 2.0 - {A} Bioinformatics Registry for Journal Published
               Tools with Interoperability to bio.tools},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {4},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0059},
  doi       = {10.1515/jib-2019-0059},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FriedrichsSCISS19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GarkovKKS19,
  author    = {Dimitar Garkov and
               Karsten Klein and
               Christian Klukas and
               Falk Schreiber},
  title     = {Mental-Map Preserving Visualisation of Partitioned Networks in Vanted},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0026},
  doi       = {10.1515/jib-2019-0026},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GarkovKKS19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GhaffarSKAJSL19,
  author    = {Mehmood Ghaffar and
               Danuta Sch{\"{u}}ler and
               Patrick K{\"{o}}nig and
               Daniel Arend and
               Astrid Junker and
               Uwe Scholz and
               Matthias Lange},
  title     = {Programmatic Access to FAIRified Digital Plant Genetic Resources},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {4},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0060},
  doi       = {10.1515/jib-2019-0060},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GhaffarSKAJSL19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GuyeuxSAAC19,
  author    = {Christophe Guyeux and
               Michel Salomon and
               Bashar Al{-}Nuaimi and
               Bassam AlKindy and
               Jean{-}Fran{\c{c}}ois Couchot},
  title     = {Ancestral Reconstruction and Investigations of Genomic Recombination
               on some Pentapetalae Chloroplasts},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {4},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0057},
  doi       = {10.1515/jib-2018-0057},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GuyeuxSAAC19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HuckaBCDHKKNMOS19,
  author    = {Michael Hucka and
               Frank T. Bergmann and
               Claudine Chaouiya and
               Andreas Dr{\"{a}}ger and
               Stefan Hoops and
               Sarah M. Keating and
               Matthias K{\"{o}}nig and
               Nicolas Le Nov{\`{e}}re and
               Chris J. Myers and
               Brett G. Olivier and
               Sven Sahle and
               James C. Schaff and
               Rahuman S. Malik{-}Sheriff and
               Lucian P. Smith and
               Dagmar Waltemath and
               Darren J. Wilkinson and
               Fengkai Zhang},
  title     = {The Systems Biology Markup Language {(SBML):} Language Specification
               for Level 3 Version 2 Core Release 2},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {2},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0021},
  doi       = {10.1515/jib-2019-0021},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HuckaBCDHKKNMOS19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LiAS19,
  author    = {Yaoyong Li and
               Elisa Aguilar{-}Martinez and
               Andrew D. Sharrocks},
  title     = {Geno2proteo, a Tool for Batch Retrieval of {DNA} and Protein Sequences
               from Any Genomic or Protein Regions},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0090},
  doi       = {10.1515/jib-2018-0090},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LiAS19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MadsenMPPRABCCG19,
  author    = {Curtis Madsen and
               {\'{A}}ngel Go{\~{n}}i Moreno and
               Umesh P and
               Zachary Palchick and
               Nicholas Roehner and
               Christian Atallah and
               Bryan Bartley and
               Kiri Choi and
               Robert Sidney Cox III and
               Thomas E. Gorochowski and
               Raik Gr{\"{u}}nberg and
               Chris Macklin and
               James McLaughlin and
               Xianwei Meng and
               Tramy Nguyen and
               Matthew R. Pocock and
               Meher Samineni and
               James Scott{-}Brown and
               Ysis Tarter and
               Michael Zhang and
               Zhen Zhang and
               Zach Zundel and
               Jacob Beal and
               Michael Bissell and
               Kevin Clancy and
               John H. Gennari and
               Goksel Misirli and
               Chris J. Myers and
               Ernst Oberortner and
               Herbert M. Sauro and
               Anil Wipat},
  title     = {Synthetic Biology Open Language {(SBOL)} Version 2.3},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {2},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0025},
  doi       = {10.1515/jib-2019-0025},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MadsenMPPRABCCG19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MadsenMPPRBBBBC19,
  author    = {Curtis Madsen and
               {\'{A}}ngel Go{\~{n}}i Moreno and
               Zachary Palchick and
               Umesh P and
               Nicholas Roehner and
               Bryan Bartley and
               Swapnil Bhatia and
               Shyam Bhakta and
               Mike Bissell and
               Kevin Clancy and
               Robert Sidney Cox III and
               Thomas E. Gorochowski and
               Raik Gr{\"{u}}nberg and
               Augustin Luna and
               James McLaughlin and
               Tramy Nguyen and
               Nicolas Le Nov{\`{e}}re and
               Matthew R. Pocock and
               Herbert M. Sauro and
               James Scott{-}Brown and
               John T. Sexton and
               Guy{-}Bart Stan and
               Jeffrey J. Tabor and
               Christopher A. Voigt and
               Zach Zundel and
               Chris J. Myers and
               Jacob Beal and
               Anil Wipat},
  title     = {Synthetic Biology Open Language Visual {(SBOL} Visual) Version 2.1},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {2},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0101},
  doi       = {10.1515/jib-2018-0101},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MadsenMPPRBBBBC19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PerscheidGU19,
  author    = {Cindy Perscheid and
               Bastien Grasnick and
               Matthias Uflacker},
  title     = {Integrative Gene Selection on Gene Expression Data: Providing Biological
               Context to Traditional Approaches},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {1},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0064},
  doi       = {10.1515/jib-2018-0064},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PerscheidGU19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PuckerSS19,
  author    = {Boas Pucker and
               Hanna Marie Schilbert and
               Sina Franziska Schumacher},
  title     = {Integrating Molecular Biology and Bioinformatics Education},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0005},
  doi       = {10.1515/jib-2019-0005},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PuckerSS19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RougnyTMBCBDMDB19,
  author    = {Adrien Rougny and
               Vasundra Tour{\'{e}} and
               Stuart L. Moodie and
               Irina Balaur and
               Tobias Czauderna and
               Hanna Borlinghaus and
               Ugur Dogrusoz and
               Alexander Mazein and
               Andreas Dr{\"{a}}ger and
               Michael L. Blinov and
               Alice Vill{\'{e}}ger and
               Robin Haw and
               Emek Demir and
               Huaiyu Mi and
               Anatoly A. Sorokin and
               Falk Schreiber and
               Augustin Luna},
  title     = {Systems Biology Graphical Notation: Process Description language Level
               1 Version 2.0},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {2},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0022},
  doi       = {10.1515/jib-2019-0022},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RougnyTMBCBDMDB19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SalgueroTC19,
  author    = {Alberto G. Salguero and
               Antonio J. Tomeu{-}Hardasmal and
               Manuel I. Capel},
  title     = {Dynamic Load Balancing Strategy for Parallel Tumor Growth Simulations},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {1},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0066},
  doi       = {10.1515/jib-2018-0066},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SalgueroTC19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberSBGGHK19,
  author    = {Falk Schreiber and
               Bj{\"{o}}rn Sommer and
               Gary D. Bader and
               Padraig Gleeson and
               Martin Golebiewski and
               Michael Hucka and
               Sarah M. Keating and
               Matthias K{\"{o}}nig and
               Chris J. Myers and
               David P. Nickerson and
               Dagmar Waltemath},
  title     = {Specifications of Standards in Systems and Synthetic Biology: Status
               and Developments in 2019},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {2},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0035},
  doi       = {10.1515/jib-2019-0035},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SchreiberSBGGHK19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Sebastian-Perez19,
  author    = {V{\'{\i}}ctor Sebasti{\'{a}}n{-}P{\'{e}}rez and
               Mar{\'{\i}}a Jimena Mart{\'{\i}}nez and
               Carmen Gil and
               Nuria E. Campillo and
               Ana Mart{\'{\i}}nez and
               Ignacio Ponzoni},
  title     = {{QSAR} Modelling to Identify {LRRK2} Inhibitors for Parkinson's Disease},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {1},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0063},
  doi       = {10.1515/jib-2018-0063},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Sebastian-Perez19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Sommer19,
  author    = {Bj{\"{o}}rn Sommer},
  title     = {The CELLmicrocosmos Tools: {A} Small History of Java-Based Cell and
               Membrane Modelling Open Source Software Development},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0057},
  doi       = {10.1515/jib-2019-0057},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Sommer19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/StahlFKMB19,
  author    = {Niclas St{\aa}hl and
               G{\"{o}}ran Falkman and
               Alexander Karlsson and
               Gunnar Mathiason and
               Jonas Bostr{\"{o}}m},
  title     = {Deep Convolutional Neural Networks for the Prediction of Molecular
               Properties: Challenges and Opportunities Connected to the Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {1},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0065},
  doi       = {10.1515/jib-2018-0065},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/StahlFKMB19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/VasievaG19,
  author    = {Olga Vasieva and
               Igor Goryanin},
  title     = {Is there a Function for a Sex Pheromone Precursor?},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {4},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0016},
  doi       = {10.1515/jib-2019-0016},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/VasievaG19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/VieiraFRLR19,
  author    = {V{\'{\i}}tor Vieira and
               Jorge Ferreira and
               R{\'{u}}ben Rodrigues and
               Filipe Liu and
               Miguel Rocha},
  title     = {A Model Integration Pipeline for the Improvement of Human Genome-Scale
               Metabolic Reconstructions},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {1},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0068},
  doi       = {10.1515/jib-2018-0068},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/VieiraFRLR19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZhangWCC19,
  author    = {Peijing Zhang and
               Wenyi Wu and
               Qi Chen and
               Ming Chen},
  title     = {Non-Coding RNAs and their Integrated Networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {3},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2019-0027},
  doi       = {10.1515/jib-2019-0027},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZhangWCC19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZolotarevaK19,
  author    = {Olga I. Zolotareva and
               Maren Kleine},
  title     = {A Survey of Gene Prioritization Tools for Mendelian and Complex Human
               Diseases},
  journal   = {J. Integr. Bioinform.},
  volume    = {16},
  number    = {4},
  year      = {2019},
  url       = {https://doi.org/10.1515/jib-2018-0069},
  doi       = {10.1515/jib-2018-0069},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZolotarevaK19.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BergmannCKMNNOS18,
  author    = {Frank T. Bergmann and
               Jonathan Cooper and
               Matthias K{\"{o}}nig and
               Ion I. Moraru and
               David P. Nickerson and
               Nicolas Le Nov{\`{e}}re and
               Brett G. Olivier and
               Sven Sahle and
               Lucian P. Smith and
               Dagmar Waltemath},
  title     = {Simulation Experiment Description Markup Language {(SED-ML)} Level
               1 Version 3 {(L1V3)}},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0086},
  doi       = {10.1515/jib-2017-0086},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BergmannCKMNNOS18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BergmannKGSW18,
  author    = {Frank T. Bergmann and
               Sarah M. Keating and
               Ralph Gauges and
               Sven Sahle and
               Katja Wengler},
  title     = {{SBML} Level 3 package: Render, Version 1, Release 1},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0078},
  doi       = {10.1515/jib-2017-0078},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BergmannKGSW18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BiereGDJRFHSKS18,
  author    = {Niklas Biere and
               Mehmood Ghaffar and
               Anja Doebbe and
               Daniel J{\"{a}}ger and
               Nils Rothe and
               Benjamin M. Friedrich and
               Ralf Hofest{\"{a}}dt and
               Falk Schreiber and
               Olaf Kruse and
               Bj{\"{o}}rn Sommer},
  title     = {Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas
               reinhardtii Cell},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {2},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0003},
  doi       = {10.1515/jib-2018-0003},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BiereGDJRFHSKS18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Blatke18,
  author    = {Mary Ann Bl{\"{a}}tke},
  title     = {BioModelKit - An Integrative Framework for Multi-Scale Biomodel-Engineering},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {3},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0021},
  doi       = {10.1515/jib-2018-0021},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Blatke18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BraginaGGNBKSZG18,
  author    = {Elena Yu. Bragina and
               Irina A. Goncharova and
               Anna F. Garaeva and
               Evgeniy V. Nemerov and
               Anastasija A. Babovskaya and
               Andrey B. Karpov and
               Yulia V. Semenova and
               Irina Z. Zhalsanova and
               Densema E. Gomboeva and
               Olga V. Saik and
               Olga I. Zolotareva and
               Vladimir A. Ivanisenko and
               Victor E. Dosenko and
               Ralf Hofest{\"{a}}dt and
               Maxim B. Freidin},
  title     = {Molecular Relationships between Bronchial Asthma and Hypertension
               as Comorbid Diseases},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {4},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0052},
  doi       = {10.1515/jib-2018-0052},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BraginaGGNBKSZG18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrandiziSRH18,
  author    = {Marco Brandizi and
               Ajit Singh and
               Christopher J. Rawlings and
               Keywan Hassani{-}Pak},
  title     = {Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked
               Data and Graph Database Approach},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {3},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0023},
  doi       = {10.1515/jib-2018-0023},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BrandiziSRH18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrinkrolfHOPKL18,
  author    = {Christoph Brinkrolf and
               Nadja A. Henke and
               Lennart A. Ochel and
               Boas Pucker and
               Olaf Kruse and
               Petra Lutter},
  title     = {Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga
               Using Petri Nets and New Concepts of {VANESA}},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {3},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0018},
  doi       = {10.1515/jib-2018-0018},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BrinkrolfHOPKL18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BusatoDBKBVPBG18,
  author    = {Mirko Busato and
               Rosario Distefano and
               Ferdia Bates and
               Kal Karim and
               Alessandra Maria Bossi and
               Jos{\'{e}} Manuel L{\'{o}}pez Vilari{\~{n}}o and
               Sergey Piletsky and
               Nicola Bombieri and
               Alejandro Giorgetti},
  title     = {{MIRATE:} MIps RATional dEsign Science Gateway},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {4},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0075},
  doi       = {10.1515/jib-2017-0075},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BusatoDBKBVPBG18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChowdhurySGBSNS18,
  author    = {Saikat Chowdhury and
               Noopur Sinha and
               Piyali Ganguli and
               Rupa Bhowmick and
               Vidhi Singh and
               Sutanu Nandi and
               Ram Rup Sarkar},
  title     = {{BIOPYDB:} {A} Dynamic Human Cell Specific Biochemical Pathway Database
               with Advanced Computational Analyses Platform},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {3},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0072},
  doi       = {10.1515/jib-2017-0072},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ChowdhurySGBSNS18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CoxMMNRBBBCCGMM18,
  author    = {Robert Sidney Cox III and
               Curtis Madsen and
               James McLaughlin and
               Tramy Nguyen and
               Nicholas Roehner and
               Bryan Bartley and
               Jacob Beal and
               Michael Bissell and
               Kiri Choi and
               Kevin Clancy and
               Raik Gr{\"{u}}nberg and
               Chris Macklin and
               Goksel Misirli and
               Ernst Oberortner and
               Matthew R. Pocock and
               Meher Samineni and
               Michael Zhang and
               Zhen Zhang and
               Zach Zundel and
               John H. Gennari and
               Chris J. Myers and
               Herbert M. Sauro and
               Anil Wipat},
  title     = {Synthetic Biology Open Language {(SBOL)} Version 2.2.0},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0001},
  doi       = {10.1515/jib-2018-0001},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CoxMMNRBBBCCGMM18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CoxMMNRBBBCGGLN18,
  author    = {Robert Sidney Cox III and
               Curtis Madsen and
               James McLaughlin and
               Tramy Nguyen and
               Nicholas Roehner and
               Bryan Bartley and
               Swapnil Bhatia and
               Mike Bissell and
               Kevin Clancy and
               Thomas E. Gorochowski and
               Raik Gr{\"{u}}nberg and
               Augustin Luna and
               Nicolas Le Nov{\`{e}}re and
               Matthew R. Pocock and
               Herbert M. Sauro and
               John T. Sexton and
               Guy{-}Bart Stan and
               Jeffrey J. Tabor and
               Christopher A. Voigt and
               Zach Zundel and
               Chris J. Myers and
               Jacob Beal and
               Anil Wipat},
  title     = {Synthetic Biology Open Language Visual {(SBOL} Visual) Version 2.0},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0074},
  doi       = {10.1515/jib-2017-0074},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CoxMMNRBBBCGGLN18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DrevytskaMTPNBL18,
  author    = {Tatiana Drevytska and
               Roman Morhachov and
               Lesya Tumanovska and
               Georgiy Portnichenko and
               Vasyl Nagibin and
               Oleksiy Boldyriev and
               Tatiana Lapikova{-}Bryhinska and
               Veronika Gurianova and
               Borys Dons'koi and
               Maxim B. Freidin and
               Vladimir A. Ivanisenko and
               Elena Yu. Bragina and
               Ralf Hofest{\"{a}}dt and
               Victor E. Dosenko},
  title     = {shRNA-Induced Knockdown of a Bioinformatically Predicted Target {IL10}
               Influences Functional Parameters in Spontaneously Hypertensive Rats
               with Asthma},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {4},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0053},
  doi       = {10.1515/jib-2018-0053},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/DrevytskaMTPNBL18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HabibAJR18,
  author    = {Nahida Habib and
               Kawsar Ahmed and
               Iffat Jabin and
               Mohammad Motiur Rahman},
  title     = {Modified HuffBit Compress Algorithm - An Application of {R}},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {3},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0057},
  doi       = {10.1515/jib-2017-0057},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HabibAJR18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HofestadtI18,
  author    = {Ralf Hofest{\"{a}}dt and
               Vladimir A. Ivanisenko},
  title     = {Integrative Analysis of Co-Morbid Multifactorial Diseases},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {4},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0088},
  doi       = {10.1515/jib-2018-0088},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HofestadtI18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HuckaBDHKNMOSSS18,
  author    = {Michael Hucka and
               Frank T. Bergmann and
               Andreas Dr{\"{a}}ger and
               Stefan Hoops and
               Sarah M. Keating and
               Nicolas Le Nov{\`{e}}re and
               Chris J. Myers and
               Brett G. Olivier and
               Sven Sahle and
               James C. Schaff and
               Lucian P. Smith and
               Dagmar Waltemath and
               Darren J. Wilkinson},
  title     = {The Systems Biology Markup Language {(SBML):} Language Specification
               for Level 3 Version 1 Core},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0080},
  doi       = {10.1515/jib-2017-0080},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HuckaBDHKNMOSSS18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HuckaBDHKNMOSSS18a,
  author    = {Michael Hucka and
               Frank T. Bergmann and
               Andreas Dr{\"{a}}ger and
               Stefan Hoops and
               Sarah M. Keating and
               Nicolas Le Nov{\`{e}}re and
               Chris J. Myers and
               Brett G. Olivier and
               Sven Sahle and
               James C. Schaff and
               Lucian P. Smith and
               Dagmar Waltemath and
               Darren J. Wilkinson},
  title     = {The Systems Biology Markup Language {(SBML):} Language Specification
               for Level 3 Version 2 Core},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0081},
  doi       = {10.1515/jib-2017-0081},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HuckaBDHKNMOSSS18a.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KatiyarSA18,
  author    = {Amit Katiyar and
               Harpreet Singh and
               Krishna Kant Azad},
  title     = {Identification of Missing Carbon Fixation Enzymes as Potential Drug
               Targets in Mycobacterium Tuberculosis},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {3},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0041},
  doi       = {10.1515/jib-2017-0041},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KatiyarSA18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MaesMDLGMLB18,
  author    = {Alexandre Maes and
               Xavier Martinez and
               Karen Druart and
               Benoist Laurent and
               Sean Gu{\'{e}}gan and
               Christophe H. Marchand and
               St{\'{e}}phane D. Lemaire and
               Marc Baaden},
  title     = {MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {2},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0006},
  doi       = {10.1515/jib-2018-0006},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MaesMDLGMLB18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MullerKHBHKRWE18,
  author    = {Christoph M{\"{u}}ller and
               Michael Krone and
               Markus Huber and
               Verena Biener and
               Dominik Herr and
               Steffen Koch and
               Guido Reina and
               Daniel Weiskopf and
               Thomas Ertl},
  title     = {Interactive Molecular Graphics for Augmented Reality Using HoloLens},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {2},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0005},
  doi       = {10.1515/jib-2018-0005},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MullerKHBHKRWE18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/OlivierB18,
  author    = {Brett G. Olivier and
               Frank T. Bergmann},
  title     = {{SBML} Level 3 Package: Flux Balance Constraints version 2},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0082},
  doi       = {10.1515/jib-2017-0082},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/OlivierB18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PlatzerPRHRN18,
  author    = {Alexander Platzer and
               Julia Polzin and
               Klaus Rembart and
               Ping Penny Han and
               Denise Rauer and
               Thomas Nussbaumer},
  title     = {BioSankey: Visualization of Microbial Communities Over Time},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {4},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0063},
  doi       = {10.1515/jib-2017-0063},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PlatzerPRHRN18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RistevskiC18,
  author    = {Blagoj Ristevski and
               Ming Chen},
  title     = {Big Data Analytics in Medicine and Healthcare},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {3},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0030},
  doi       = {10.1515/jib-2017-0030},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RistevskiC18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SaikDIBFDZCHI18,
  author    = {Olga V. Saik and
               Pavel S. Demenkov and
               Timofey V. Ivanisenko and
               Elena Yu. Bragina and
               Maxim B. Freidin and
               Victor E. Dosenko and
               Olga I. Zolotareva and
               Evgeniy L. Choynzonov and
               Ralf Hofest{\"{a}}dt and
               Vladimir A. Ivanisenko},
  title     = {Search for New Candidate Genes Involved in the Comorbidity of Asthma
               and Hypertension Based on Automatic Analysis of Scientific Literature},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {4},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0054},
  doi       = {10.1515/jib-2018-0054},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SaikDIBFDZCHI18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberBGGHKN18,
  author    = {Falk Schreiber and
               Gary D. Bader and
               Padraig Gleeson and
               Martin Golebiewski and
               Michael Hucka and
               Sarah M. Keating and
               Nicolas Le Nov{\`{e}}re and
               Chris J. Myers and
               David P. Nickerson and
               Bj{\"{o}}rn Sommer and
               Dagmar Waltemath},
  title     = {Specifications of Standards in Systems and Synthetic Biology: Status
               and Developments in 2017},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0013},
  doi       = {10.1515/jib-2018-0013},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SchreiberBGGHKN18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SenerSFO18,
  author    = {Duygu Dede Sener and
               Daniele Santoni and
               Giovanni Felici and
               Hasan Ogul},
  title     = {A Content-Based Retrieval Framework for Whole Metagenome Sequencing
               Samples},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {4},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0067},
  doi       = {10.1515/jib-2017-0067},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SenerSFO18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ShoshiHZFMIDB18,
  author    = {Alban Shoshi and
               Ralf Hofest{\"{a}}dt and
               Olga I. Zolotareva and
               Marcel Friedrichs and
               Alex Maier and
               Vladimir A. Ivanisenko and
               Victor E. Dosenko and
               Elena Yu. Bragina},
  title     = {GenCoNet - {A} Graph Database for the Analysis of Comorbidities by
               Gene Networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {4},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0049},
  doi       = {10.1515/jib-2018-0049},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ShoshiHZFMIDB18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SommerBKW18,
  author    = {Bj{\"{o}}rn Sommer and
               Marc Baaden and
               Michael Krone and
               Andrew Woods},
  title     = {From Virtual Reality to Immersive Analytics in Bioinformatics},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {2},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0043},
  doi       = {10.1515/jib-2018-0043},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SommerBKW18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TrelletFFBB18,
  author    = {Mikael Trellet and
               Nicolas F{\'{e}}rey and
               Jakub Flotynski and
               Marc Baaden and
               Patrick Bourdot},
  title     = {Semantics for an Integrative and Immersive Pipeline Combining Visualization
               and Analysis of Molecular Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {2},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0004},
  doi       = {10.1515/jib-2018-0004},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TrelletFFBB18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WiebrandsMWRM18,
  author    = {Michael Wiebrands and
               Chris J. Malajczuk and
               Andrew J. Woods and
               Andrew L. Rohl and
               Ricardo L. Mancera},
  title     = {Molecular Dynamics Visualization {(MDV):} Stereoscopic 3D Display
               of Biomolecular Structure and Interactions Using the Unity Game Engine},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {2},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0010},
  doi       = {10.1515/jib-2018-0010},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WiebrandsMWRM18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WongPBDB18,
  author    = {Hua Wong and
               Jessica Pr{\'{e}}voteau{-}Jonquet and
               St{\'{e}}phanie Baud and
               Manuel Dauchez and
               Nicolas Belloy},
  title     = {Mesoscopic Rigid Body Modelling of the Extracellular Matrix Self-Assembly},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {2},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2018-0009},
  doi       = {10.1515/jib-2018-0009},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WongPBDB18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZhangM18,
  author    = {Fengkai Zhang and
               Martin Meier{-}Schellersheim},
  title     = {{SBML} Level 3 package: Multistate, Multicomponent and Multicompartment
               Species, Version 1, Release 1},
  journal   = {J. Integr. Bioinform.},
  volume    = {15},
  number    = {1},
  year      = {2018},
  url       = {https://doi.org/10.1515/jib-2017-0077},
  doi       = {10.1515/jib-2017-0077},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZhangM18.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AfonsoMUNNMR17,
  author    = {Telma Afonso and
               Rodolfo Moresco and
               Virg{\'{\i}}lio G. Uarrota and
               Bruno Bachiega Navarro and
               Eduardo da C. Nunes and
               Marcelo Maraschin and
               Miguel Rocha},
  title     = {UV-Vis and {CIELAB} Based Chemometric Characterization of Manihot
               esculenta Carotenoid Contents},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {4},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0056},
  doi       = {10.1515/jib-2017-0056},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AfonsoMUNNMR17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AlnasirS17,
  author    = {Jamie J. Alnasir and
               Hugh P. Shanahan},
  title     = {A Novel Method to Detect Bias in Short Read {NGS} Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {3},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0025},
  doi       = {10.1515/jib-2017-0025},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AlnasirS17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AntunesM17,
  author    = {Rui Antunes and
               S{\'{e}}rgio Matos},
  title     = {Supervised Learning and Knowledge-Based Approaches Applied to Biomedical
               Word Sense Disambiguation},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {4},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0051},
  doi       = {10.1515/jib-2017-0051},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AntunesM17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BabenkoGBCVMGKO17,
  author    = {Vladimir N. Babenko and
               Natalya V. Gubanova and
               Anatoly O. Bragin and
               Irina V. Chadaeva and
               Gennady V. Vasiliev and
               Irina V. Medvedeva and
               Alexey S. Gaytan and
               Alexey L. Krivoshapkin and
               Yuriy L. Orlov},
  title     = {Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing
               Events},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {3},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0022},
  doi       = {10.1515/jib-2017-0022},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BabenkoGBCVMGKO17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BabenkoSK17,
  author    = {Vladimir N. Babenko and
               Dmitry A. Smagin and
               Natalia N. Kudryavtseva},
  title     = {RNA-Seq Mouse Brain Regions Expression Data Analysis: Focus on ApoE
               Functional Network},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {3},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0024},
  doi       = {10.1515/jib-2017-0024},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BabenkoSK17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BarbosaRHSBAB17,
  author    = {Eudes Barbosa and
               Richard R{\"{o}}ttger and
               Anne{-}Christin Hauschild and
               Siomar de Castro Soares and
               Sebastian B{\"{o}}cker and
               Vasco Azevedo and
               Jan Baumbach},
  title     = {LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform
               for Genomic Island Analysis},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0010},
  doi       = {10.1515/jib-2017-0010},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BarbosaRHSBAB17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Benstead-HumeWP17,
  author    = {Graeme Benstead{-}Hume and
               Sarah K. Wooller and
               Frances M. G. Pearl},
  title     = {Computational Approaches to Identify Genetic Interactions for Cancer
               Therapeutics},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {3},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0027},
  doi       = {10.1515/jib-2017-0027},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Benstead-HumeWP17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BhattacharyaC17,
  author    = {Anindya Bhattacharya and
               Yan Cui},
  title     = {Systematic Prediction of the Impacts of Mutations in MicroRNA Seed
               Sequences},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {1},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0001},
  doi       = {10.1515/jib-2017-0001},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BhattacharyaC17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CardosoMPRP17,
  author    = {Sara Cardoso and
               Marcelo Maraschin and
               Luiz Augusto Martins Peruch and
               Miguel Rocha and
               Aline Pereira},
  title     = {A Chemometrics Approach for Nuclear Magnetic Resonance Data to Characterize
               the Partial Metabolome Banana Peels from Southern Brazil},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {4},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0053},
  doi       = {10.1515/jib-2017-0053},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CardosoMPRP17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChenHSO17,
  author    = {Ming Chen and
               Andrew P. Harrison and
               Hugh P. Shanahan and
               Yuriy L. Orlov},
  title     = {Biological Big Bytes: Integrative Analysis of Large Biological Datasets},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {3},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0052},
  doi       = {10.1515/jib-2017-0052},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ChenHSO17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DemirciA17,
  author    = {Muserref Duygu Sa{\c{c}}ar Demirci and
               Jens Allmer},
  title     = {Improving the Quality of Positive Datasets for the Establishment of
               Machine Learning Models for pre-microRNA Detection},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0032},
  doi       = {10.1515/jib-2017-0032},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/DemirciA17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Fdez-RiverolaR17,
  author    = {Florentino Fdez{-}Riverola and
               Miguel Rocha},
  title     = {Selected Extended Papers of the 11th International Conference on Practical
               Applications of Computational Biology and Bioinformatics {(PACBB)}},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {4},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0071},
  doi       = {10.1515/jib-2017-0071},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Fdez-RiverolaR17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FerreiraISC17,
  author    = {Jo{\~{a}}o D. Ferreira and
               Bruno In{\'{a}}cio and
               Reza M. Salek and
               Francisco M. Couto},
  title     = {Assessing Public Metabolomics Metadata, Towards Improving Quality},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {4},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0054},
  doi       = {10.1515/jib-2017-0054},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FerreiraISC17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GeMZWWZ17,
  author    = {Ruiquan Ge and
               Guoqin Mai and
               Ruochi Zhang and
               Xundong Wu and
               Qing Wu and
               Fengfeng Zhou},
  title     = {MUSTv2: An Improved De Novo Detection Program for Recently Active
               Miniature Inverted Repeat Transposable Elements (MITEs)},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {3},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0029},
  doi       = {10.1515/jib-2017-0029},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GeMZWWZ17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Ghosh17,
  author    = {Shyamasree Ghosh},
  title     = {Application of Computational Methods in Planaria Research: {A} Current
               Update},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {4},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0007},
  doi       = {10.1515/jib-2017-0007},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Ghosh17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GoswamiTS17,
  author    = {Kavita Goswami and
               Anita Tripathi and
               Neeti Sanan{-}Mishra},
  title     = {Comparative miRomics of Salt-Tolerant and Salt-Sensitive Rice},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {1},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0002},
  doi       = {10.1515/jib-2017-0002},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GoswamiTS17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HamzeiySBJHA17,
  author    = {Hamid Hamzeiy and
               Rabia Suluyayla and
               Christoph Brinkrolf and
               Sebastian Jan Janowski and
               Ralf Hofest{\"{a}}dt and
               Jens Allmer},
  title     = {Visualization and Analysis of MicroRNAs within {KEGG} Pathways using
               {VANESA}},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {1},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2016-0004},
  doi       = {10.1515/jib-2016-0004},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HamzeiySBJHA17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Hassani-PakR17,
  author    = {Keywan Hassani{-}Pak and
               Christopher J. Rawlings},
  title     = {Knowledge Discovery in Biological Databases for Revealing Candidate
               Genes Linked to Complex Phenotypes},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {1},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2016-0002},
  doi       = {10.1515/jib-2016-0002},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Hassani-PakR17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HofestadtSSA17,
  author    = {Ralf Hofest{\"{a}}dt and
               Falk Schreiber and
               Bj{\"{o}}rn Sommer and
               Jens Allmer},
  title     = {Computational miRNomics - Integrative Approaches},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {1},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0012},
  doi       = {10.1515/jib-2017-0012},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HofestadtSSA17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Karakulah17,
  author    = {G{\"{o}}khan Karak{\"{u}}lah},
  title     = {Discovery and Annotation of Plant Endogenous Target Mimicry Sequences
               from Public Transcriptome Libraries: {A} Case Study of Prunus persica},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {4},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0009},
  doi       = {10.1515/jib-2017-0009},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Karakulah17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LarsenB17,
  author    = {Simon J. Larsen and
               Jan Baumbach},
  title     = {CytoMCS: {A} Multiple Maximum Common Subgraph Detection Tool for Cytoscape},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0014},
  doi       = {10.1515/jib-2017-0014},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LarsenB17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/List17,
  author    = {Markus List},
  title     = {Using Docker Compose for the Simple Deployment of an Integrated Drug
               Target Screening Platform},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0016},
  doi       = {10.1515/jib-2017-0016},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/List17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MaierBBBECLGFM17,
  author    = {Jennifer Maier and
               Marianne Black and
               Serena Bonaretti and
               Bastian Bier and
               Bjoern Eskofier and
               Jang Hwan Choi and
               Marc Levenston and
               Garry Gold and
               Rebecca Fahrig and
               Andreas K. Maier},
  title     = {Comparison of Different Approaches for Measuring Tibial Cartilage
               Thickness},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0015},
  doi       = {10.1515/jib-2017-0015},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MaierBBBECLGFM17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Malod-DogninP17,
  author    = {No{\"{e}}l Malod{-}Dognin and
               Natasa Przulj},
  title     = {Omics Data Complementarity Underlines Functional Cross-Communication
               in Yeast},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0018},
  doi       = {10.1515/jib-2017-0018},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Malod-DogninP17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MatosA17,
  author    = {S{\'{e}}rgio Matos and
               Rui Antunes},
  title     = {Protein-Protein Interaction Article Classification Using a Convolutional
               Recurrent Neural Network with Pre-trained Word Embeddings},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {4},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0055},
  doi       = {10.1515/jib-2017-0055},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MatosA17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MillerZB17,
  author    = {Maximilian Miller and
               Chengsheng Zhu and
               Yana Bromberg},
  title     = {clubber: removing the bioinformatics bottleneck in big data analyses},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0020},
  doi       = {10.1515/jib-2017-0020},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MillerZB17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RahamanAGC17,
  author    = {Matiur Rahaman and
               Md. Asif Ahsan and
               Zeeshan Gillani and
               Ming Chen},
  title     = {Digital Biomass Accumulation Using High-Throughput Plant Phenotype
               Data Analysis},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {3},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0028},
  doi       = {10.1515/jib-2017-0028},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RahamanAGC17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SadeghNSH17,
  author    = {Sepideh Sadegh and
               Maryam Nazarieh and
               Christian Spaniol and
               Volkhard Helms},
  title     = {Randomization Strategies Affect Motif Significance Analysis in TF-miRNA-Gene
               Regulatory Networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0017},
  doi       = {10.1515/jib-2017-0017},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SadeghNSH17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SondergaardNPB17,
  author    = {Dan S{\o}ndergaard and
               Svend V. Nielsen and
               Christian N. S. Pedersen and
               S{\o}ren Besenbacher},
  title     = {Prediction of Primary Tumors in Cancers of Unknown Primary},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0013},
  doi       = {10.1515/jib-2017-0013},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SondergaardNPB17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SpeicherP17,
  author    = {Nora K. Speicher and
               Nico Pfeifer},
  title     = {Towards Multiple Kernel Principal Component Analysis for Integrative
               Analysis of Tumor Samples},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0019},
  doi       = {10.1515/jib-2017-0019},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SpeicherP17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TanTBMAHK17,
  author    = {Qihua Tan and
               Mads Thomassen and
               Mark Burton and
               Kristian Fredl{\o}v Mose and
               Klaus Ejner Andersen and
               Jacob v. B. Hjelmborg and
               Torben Arvid Kruse},
  title     = {Generalized Correlation Coefficient for Non-Parametric Analysis of
               Microarray Time-Course Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {2},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0011},
  doi       = {10.1515/jib-2017-0011},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TanTBMAHK17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WangAC17,
  author    = {Lijun Wang and
               Md. Asif Ahsan and
               Ming Chen},
  title     = {A Generalized Approach for Measuring Relationships Among Genes},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {3},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2017-0026},
  doi       = {10.1515/jib-2017-0026},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WangAC17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/YazbeckTSH17,
  author    = {Ali M. Yazbeck and
               Kifah R. Tout and
               Peter F. Stadler and
               Jana Hertel},
  title     = {Towards a Consistent, Quantitative Evaluation of MicroRNA Evolution},
  journal   = {J. Integr. Bioinform.},
  volume    = {14},
  number    = {1},
  year      = {2017},
  url       = {https://doi.org/10.1515/jib-2016-0013},
  doi       = {10.1515/jib-2016-0013},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/YazbeckTSH17.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AllmerY16,
  author    = {Jens Allmer and
               Malik Yousef},
  title     = {Editorial: Computational miRNomics},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {5},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-302},
  doi       = {10.2390/biecoll-jib-2016-302},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AllmerY16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AlmeidaASB16,
  author    = {Diogo Almeida and
               Vasco Azevedo and
               Artur Silva and
               Jan Baumbach},
  title     = {PetriScape - {A} plugin for discrete Petri net simulations in Cytoscape},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {1},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-284},
  doi       = {10.2390/biecoll-jib-2016-284},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AlmeidaASB16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AlmeidaSLMSVTBR16,
  author    = {Diogo Almeida and
               Ida Skov and
               Jesper Lund and
               Afsaneh Mohammadnejad and
               Artur Silva and
               Fabio Vandin and
               Qihua Tan and
               Jan Baumbach and
               Richard R{\"{o}}ttger},
  title     = {Jllumina - {A} comprehensive Java-based {API} for statistical Illumina
               Infinium HumanMethylation450 and MethylationEPIC data processing},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {4},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-294},
  doi       = {10.2390/biecoll-jib-2016-294},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AlmeidaSLMSVTBR16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BabenkoBSCGOMO16,
  author    = {Vladimir N. Babenko and
               Anatoly O. Bragin and
               Anastasia M. Spitsina and
               Irina V. Chadaeva and
               Elvira R. Galieva and
               Galina V. Orlova and
               Irina V. Medvedeva and
               Yuriy L. Orlov},
  title     = {Analysis of differential gene expression by RNA-seq data in brain
               areas of laboratory animals},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {4},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-292},
  doi       = {10.2390/biecoll-jib-2016-292},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BabenkoBSCGOMO16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BealCGMNBBCCMMM16,
  author    = {Jacob Beal and
               Robert Sidney Cox III and
               Raik Gr{\"{u}}nberg and
               James McLaughlin and
               Tramy Nguyen and
               Bryan Bartley and
               Michael Bissell and
               Kiri Choi and
               Kevin Clancy and
               Chris Macklin and
               Curtis Madsen and
               Goksel Misirli and
               Ernst Oberortner and
               Matthew R. Pocock and
               Nicholas Roehner and
               Meher Samineni and
               Michael Zhang and
               Zhen Zhang and
               Zach Zundel and
               John H. Gennari and
               Chris J. Myers and
               Herbert M. Sauro and
               Anil Wipat},
  title     = {Synthetic Biology Open Language {(SBOL)} Version 2.1.0},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {3},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-291},
  doi       = {10.2390/biecoll-jib-2016-291},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BealCGMNBBCCMMM16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrinkSKNA16,
  author    = {Benedikt G. Brink and
               Annica Seidel and
               Nils Kleinb{\"{o}}lting and
               Tim W. Nattkemper and
               Stefan P. Albaum},
  title     = {Omics Fusion - {A} Platform for Integrative Analysis of Omics Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {4},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-296},
  doi       = {10.2390/biecoll-jib-2016-296},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BrinkSKNA16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CraveroMVDP16,
  author    = {Fiorella Cravero and
               Mar{\'{\i}}a Jimena Mart{\'{\i}}nez and
               Gustavo Esteban Vazquez and
               M{\'{o}}nica F{\'{a}}tima D{\'{\i}}az and
               Ignacio Ponzoni},
  title     = {Feature Learning applied to the Estimation of Tensile Strength at
               Break in Polymeric Material Design},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {2},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-286},
  doi       = {10.2390/biecoll-jib-2016-286},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CraveroMVDP16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DamkliangTSP16,
  author    = {Kasikrit Damkliang and
               Pichaya Tandayya and
               Unitsa Sangket and
               Ekawat Pasomsub},
  title     = {Integrated Automatic Workflow for Phylogenetic Tree Analysis Using
               Public Access and Local Web Services},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {1},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-287},
  doi       = {10.2390/biecoll-jib-2016-287},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/DamkliangTSP16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DemirciTA16,
  author    = {Muserref Duygu Sa{\c{c}}ar Demirci and
               Mustafa Toprak and
               Jens Allmer},
  title     = {A Machine Learning Approach for MicroRNA Precursor Prediction in Retro-transcribing
               Virus Genomes},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {5},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-303},
  doi       = {10.2390/biecoll-jib-2016-303},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/DemirciTA16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DilerUK16,
  author    = {Ebru Diler and
               Turgay Unver and
               G{\"{o}}khan Karak{\"{u}}lah},
  title     = {Differential Expression of Hyperhydricity Responsive Peach miRNAs},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {5},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-308},
  doi       = {10.2390/biecoll-jib-2016-308},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/DilerUK16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HasLKA16,
  author    = {Canan Has and
               Sergey A. Lashin and
               Alexey V. Kochetov and
               Jens Allmer},
  title     = {PGMiner reloaded, fully automated proteogenomic annotation tool linking
               genomes to proteomes},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {4},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-293},
  doi       = {10.2390/biecoll-jib-2016-293},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HasLKA16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HuckaS16,
  author    = {Michael Hucka and
               Lucian P. Smith},
  title     = {{SBML} Level 3 package: Groups, Version 1 Release 1},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {3},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-290},
  doi       = {10.2390/biecoll-jib-2016-290},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HuckaS16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KankeBVS16,
  author    = {Matthew Kanke and
               Jeanette Baran{-}Gale and
               Jonathan Villanueva and
               Praveen Sethupathy},
  title     = {miRquant 2.0: an Expanded Tool for Accurate Annotation and Quantification
               of MicroRNAs and their isomiRs from Small RNA-Sequencing Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {5},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-307},
  doi       = {10.2390/biecoll-jib-2016-307},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KankeBVS16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KotipalliGM16,
  author    = {Aneesh Kotipalli and
               Ravikumar Gutti and
               Chanchal K. Mitra},
  title     = {Dynamics of miRNA biogenesis and nuclear transport},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {5},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-305},
  doi       = {10.2390/biecoll-jib-2016-305},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KotipalliGM16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KovanciGS16,
  author    = {G{\"{o}}khan Kovanci and
               Mehmood Ghaffar and
               Bj{\"{o}}rn Sommer},
  title     = {Web-based hybrid-dimensional Visualization and Exploration of Cytological
               Localization Scenarios},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {4},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-298},
  doi       = {10.2390/biecoll-jib-2016-298},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KovanciGS16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LiZJZBTYSHC16,
  author    = {Qilin Li and
               Yincong Zhou and
               Yingmin Jiao and
               Zhao Zhang and
               Lin Bai and
               Li Tong and
               Xiong Yang and
               Bj{\"{o}}rn Sommer and
               Ralf Hofest{\"{a}}dt and
               Ming Chen},
  title     = {DaTo: an atlas of biological databases and tools},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {4},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-297},
  doi       = {10.2390/biecoll-jib-2016-297},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LiZJZBTYSHC16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MulikNBLUS16,
  author    = {Alexander Mulik and
               Valery Novochadov and
               Alexander Bondarev and
               Sofya Lipnitskaya and
               Irina Ulesikova and
               Yulia Shatyr},
  title     = {New insights into genotype-phenotype correlation in individuals with
               different level of general non-specific reactivity of an organism},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {4},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-295},
  doi       = {10.2390/biecoll-jib-2016-295},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MulikNBLUS16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PaulingK16,
  author    = {Josch Pauling and
               Edda Klipp},
  title     = {Computational Lipidomics and Lipid Bioinformatics: Filling In the
               Blanks},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {1},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-299},
  doi       = {10.2390/biecoll-jib-2016-299},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PaulingK16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RahmanMIH16,
  author    = {Julia Rahman and
               Md. Nazrul Islam Mondal and
               Md. Khaled Ben Islam and
               Md. Al Mehedi Hasan},
  title     = {Feature Fusion Based {SVM} Classifier for Protein Subcellular Localization
               Prediction},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {1},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-288},
  doi       = {10.2390/biecoll-jib-2016-288},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RahmanMIH16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Rottger16,
  author    = {Richard R{\"{o}}ttger},
  title     = {Clustering of Biological Datasets in the Era of Big Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {1},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-300},
  doi       = {10.2390/biecoll-jib-2016-300},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Rottger16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SantosR16,
  author    = {Sophia Santos and
               Isabel Rocha},
  title     = {Estimation of biomass composition from genomic and transcriptomic
               information},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {2},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-285},
  doi       = {10.2390/biecoll-jib-2016-285},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SantosR16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberBGGHNM16,
  author    = {Falk Schreiber and
               Gary D. Bader and
               Padraig Gleeson and
               Martin Golebiewski and
               Michael Hucka and
               Nicolas Le Nov{\`{e}}re and
               Chris J. Myers and
               David P. Nickerson and
               Bj{\"{o}}rn Sommer and
               Dagmar Waltemath},
  title     = {Specifications of Standards in Systems and Synthetic Biology: Status
               and Developments in 2016},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {3},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-289},
  doi       = {10.2390/biecoll-jib-2016-289},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SchreiberBGGHNM16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SoaresOJA16,
  author    = {Siomar de Castro Soares and
               Let{\'{\i}}cia de Castro Oliveira and
               Arun Kumar Jaiswal and
               Vasco Azevedo},
  title     = {Genomic Islands: an overview of current software and future improvements},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {1},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-301},
  doi       = {10.2390/biecoll-jib-2016-301},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SoaresOJA16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/YousefKA16,
  author    = {Malik Yousef and
               Waleed Khalifa and
               Loai AbdAllah},
  title     = {Ensemble Clustering Classification compete {SVM} and One-Class classifiers
               applied on plant microRNAs Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {5},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-304},
  doi       = {10.2390/biecoll-jib-2016-304},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/YousefKA16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZhangHS16,
  author    = {Jing Zhang and
               Hanane Hadj{-}Moussa and
               Kenneth B. Storey},
  title     = {Current progress of high-throughput microRNA differential expression
               analysis and random forest gene selection for model and non-model
               systems: an {R} implementation},
  journal   = {J. Integr. Bioinform.},
  volume    = {13},
  number    = {5},
  year      = {2016},
  url       = {https://doi.org/10.2390/biecoll-jib-2016-306},
  doi       = {10.2390/biecoll-jib-2016-306},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZhangHS16.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AcunaCL15,
  author    = {Ruben Acu{\~{n}}a and
               Jacques Chomilier and
               Zo{\'{e}} Lacroix},
  title     = {Managing and Documenting Legacy Scientific Workflows},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {3},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-277},
  doi       = {10.2390/biecoll-jib-2015-277},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AcunaCL15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BartleyBCMROPBM15,
  author    = {Bryan Bartley and
               Jacob Beal and
               Kevin Clancy and
               Goksel Misirli and
               Nicholas Roehner and
               Ernst Oberortner and
               Matthew R. Pocock and
               Michael Bissell and
               Curtis Madsen and
               Tramy Nguyen and
               Zhen Zhang and
               John H. Gennari and
               Chris J. Myers and
               Anil Wipat and
               Herbert M. Sauro},
  title     = {Synthetic Biology Open Language {(SBOL)} Version 2.0.0},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-272},
  doi       = {10.2390/biecoll-jib-2015-272},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BartleyBCMROPBM15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BergmannCNNW15,
  author    = {Frank T. Bergmann and
               Jonathan Cooper and
               Nicolas Le Nov{\`{e}}re and
               David P. Nickerson and
               Dagmar Waltemath},
  title     = {Simulation Experiment Description Markup Language {(SED-ML)} Level
               1 Version 2},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-262},
  doi       = {10.2390/biecoll-jib-2015-262},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BergmannCNNW15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BergmannRN15,
  author    = {Frank T. Bergmann and
               Nicolas Rodriguez and
               Nicolas Le Nov{\`{e}}re},
  title     = {{COMBINE} Archive Specification Version 1},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-261},
  doi       = {10.2390/biecoll-jib-2015-261},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BergmannRN15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CadevilleLM15,
  author    = {Bertrand Ameline de Cadeville and
               Olivier Lor{\'{e}}al and
               Fouzia Moussouni{-}Marzolf},
  title     = {RetroMine, or how to provide in-depth retrospective studies from Medline
               in a glance: the hepcidin use-case},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {3},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-275},
  doi       = {10.2390/biecoll-jib-2015-275},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CadevilleLM15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CastilloLISAAC15,
  author    = {Luis Fernando Castillo and
               Germ{\'{a}}n L{\'{o}}pez{-}Gartner and
               Gustavo A. Isaza and
               Mariana S{\'{a}}nchez and
               Jeferson Arango and
               Daniel Agudelo{-}Valencia and
               Sergio Casta{\~{n}}o},
  title     = {GITIRBio: {A} Semantic and Distributed Service Oriented-Architecture
               for Bioinformatics Pipeline},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {1},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-255},
  doi       = {10.2390/biecoll-jib-2015-255},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CastilloLISAAC15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChaouiyaKBNTINH15,
  author    = {Claudine Chaouiya and
               Sarah M. Keating and
               Duncan B{\'{e}}renguier and
               Aur{\'{e}}lien Naldi and
               Denis Thieffry and
               Martijn P. van Iersel and
               Nicolas Le Nov{\`{e}}re and
               Tom{\'{a}}s Helikar},
  title     = {The Systems Biology Markup Language {(SBML)} Level 3 Package: Qualitative
               Models, Version 1, Release 1},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-270},
  doi       = {10.2390/biecoll-jib-2015-270},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ChaouiyaKBNTINH15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CoolingH15,
  author    = {Michael T. Cooling and
               Peter J. Hunter},
  title     = {The CellML Metadata Framework 2.0 Specification},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-260},
  doi       = {10.2390/biecoll-jib-2015-260},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CoolingH15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CuellarHNLHBNHN15,
  author    = {Autumn A. Cuellar and
               Warren Hedley and
               Melanie Nelson and
               Catherine M. Lloyd and
               Matt D. B. Halstead and
               David P. Bullivant and
               David P. Nickerson and
               Peter J. Hunter and
               Poul M. F. Nielsen},
  title     = {The CellML 1.1 Specification},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-259},
  doi       = {10.2390/biecoll-jib-2015-259},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CuellarHNLHBNHN15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FreitasCRR15,
  author    = {Ana Al{\~{a}}o Freitas and
               Hugo Costa and
               Miguel Rocha and
               Isabel Rocha},
  title     = {Extracting kinetic information from literature with KineticRE},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {4},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-282},
  doi       = {10.2390/biecoll-jib-2015-282},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FreitasCRR15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GaugesRSWB15,
  author    = {Ralph Gauges and
               Ursula Rost and
               Sven Sahle and
               Katja Wengler and
               Frank Thomas Bergmann},
  title     = {The Systems Biology Markup Language {(SBML)} Level 3 Package: Layout,
               Version 1 Core},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-267},
  doi       = {10.2390/biecoll-jib-2015-267},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GaugesRSWB15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Gonzalez-Briones15,
  author    = {Alfonso Gonz{\'{a}}lez{-}Briones and
               Juan Ramos and
               Juan Francisco de Paz and
               Juan Manuel Corchado},
  title     = {Multi-agent System for Obtaining Relevant Genes in Expression Analysis
               between Young and Older Women with Triple Negative Breast Cancer},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {4},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-278},
  doi       = {10.2390/biecoll-jib-2015-278},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Gonzalez-Briones15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GuoLZFYZYZYZW15,
  author    = {Dayong Guo and
               Xiaojing Li and
               Pan Zhu and
               Yanrong Feng and
               Juan Yang and
               Zhihong Zheng and
               Wei Yang and
               Enuo Zhang and
               Yang Yu and
               Shenglai Zhou and
               Hongyu Wang},
  title     = {Online High-throughput Mutagenesis Designer Using Scoring Matrix of
               Sequence-specific Endonucleases},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {1},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-283},
  doi       = {10.2390/biecoll-jib-2015-283},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GuoLZFYZYZYZW15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HuckaBDHKNMOSSS15,
  author    = {Michael Hucka and
               Frank T. Bergmann and
               Andreas Dr{\"{a}}ger and
               Stefan Hoops and
               Sarah M. Keating and
               Nicolas Le Nov{\`{e}}re and
               Chris J. Myers and
               Brett G. Olivier and
               Sven Sahle and
               James C. Schaff and
               Lucian P. Smith and
               Dagmar Waltemath and
               Darren J. Wilkinson},
  title     = {Systems Biology Markup Language {(SBML)} Level 2 Version 5: Structures
               and Facilities for Model Definitions},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-271},
  doi       = {10.2390/biecoll-jib-2015-271},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HuckaBDHKNMOSSS15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HuckaBHKSSSW15,
  author    = {Michael Hucka and
               Frank T. Bergmann and
               Stefan Hoops and
               Sarah M. Keating and
               Sven Sahle and
               James C. Schaff and
               Lucian P. Smith and
               Darren J. Wilkinson},
  title     = {The Systems Biology Markup Language {(SBML):} Language Specification
               for Level 3 Version 1 Core},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-266},
  doi       = {10.2390/biecoll-jib-2015-266},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HuckaBHKSSSW15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KiselevaGMSFCG15,
  author    = {Larisa Kiseleva and
               Sofya K. Garushyants and
               Hongwu Ma and
               David J. W. Simpson and
               Viatcheslav Fedorovich and
               Michael F. Cohen and
               Igor Goryanin},
  title     = {Taxonomic and functional metagenomic analysis of anodic communities
               in two pilot-scale microbial fuel cells treating different industrial
               wastewaters},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {3},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-273},
  doi       = {10.2390/biecoll-jib-2015-273},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KiselevaGMSFCG15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ListFTMB15,
  author    = {Markus List and
               Michael Franz and
               Qihua Tan and
               Jan Mollenhauer and
               Jan Baumbach},
  title     = {OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {3},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-274},
  doi       = {10.2390/biecoll-jib-2015-274},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ListFTMB15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MiSMCDHLNSV15,
  author    = {Huaiyu Mi and
               Falk Schreiber and
               Stuart L. Moodie and
               Tobias Czauderna and
               Emek Demir and
               Robin Haw and
               Augustin Luna and
               Nicolas Le Nov{\`{e}}re and
               Anatoly A. Sorokin and
               Alice Vill{\'{e}}ger},
  title     = {Systems Biology Graphical Notation: Activity Flow language Level 1
               Version 1.2},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-265},
  doi       = {10.2390/biecoll-jib-2015-265},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MiSMCDHLNSV15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MoodieNDMV15,
  author    = {Stuart L. Moodie and
               Nicolas Le Nov{\`{e}}re and
               Emek Demir and
               Huaiyu Mi and
               Alice Vill{\'{e}}ger},
  title     = {Systems Biology Graphical Notation: Process Description language Level
               1 Version 1.3},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-263},
  doi       = {10.2390/biecoll-jib-2015-263},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MoodieNDMV15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MorescoUPTNPGCR15,
  author    = {Rodolfo Moresco and
               Virg{\'{\i}}lio Gavicho Uarrota and
               Aline Pereira and
               Ma{\'{\i}}ra Maciel Tomazzoli and
               Eduardo da C. Nunes and
               Luiz Augusto Martins Peruch and
               Jussara Gazzola and
               Christopher Costa and
               Miguel Rocha and
               Marcelo Maraschin},
  title     = {UV-visible scanning spectrophotometry and chemometric analysis as
               tools for carotenoids analysis in cassava genotypes (Manihot esculenta
               Crantz)},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {4},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-280},
  doi       = {10.2390/biecoll-jib-2015-280},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MorescoUPTNPGCR15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/OlivierB15,
  author    = {Brett G. Olivier and
               Frank T. Bergmann},
  title     = {The Systems Biology Markup Language {(SBML)} Level 3 Package: Flux
               Balance Constraints},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-269},
  doi       = {10.2390/biecoll-jib-2015-269},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/OlivierB15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ProtsyukGTF15,
  author    = {Ivan V. Protsyuk and
               German A. Grekhov and
               Alexey V. Tiunov and
               Mikhail Y. Fursov},
  title     = {Shared bioinformatics databases within the Unipro {UGENE} platform},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {1},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-257},
  doi       = {10.2390/biecoll-jib-2015-257},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ProtsyukGTF15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchreiberBGHKNM15,
  author    = {Falk Schreiber and
               Gary D. Bader and
               Martin Golebiewski and
               Michael Hucka and
               Benjamin Kormeier and
               Nicolas Le Nov{\`{e}}re and
               Chris J. Myers and
               David P. Nickerson and
               Bj{\"{o}}rn Sommer and
               Dagmar Waltemath and
               Stephan Weise},
  title     = {Specifications of Standards in Systems and Synthetic Biology},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-258},
  doi       = {10.2390/biecoll-jib-2015-258},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SchreiberBGHKNM15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SmithHHFGMML15,
  author    = {Lucian Paul Smith and
               Michael Hucka and
               Stefan Hoops and
               Andrew Finney and
               Martin Ginkel and
               Chris J. Myers and
               Ion I. Moraru and
               Wolfram Liebermeister},
  title     = {{SBML} Level 3 package: Hierarchical Model Composition, Version 1
               Release 3},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-268},
  doi       = {10.2390/biecoll-jib-2015-268},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SmithHHFGMML15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SokolovZLM15,
  author    = {Vladimir Sokolov and
               Bulat S. Zuraev and
               Sergei A. Lashin and
               Yury G. Matushkin},
  title     = {Web application for automatic prediction of gene translation elongation
               efficiency},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {1},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-256},
  doi       = {10.2390/biecoll-jib-2015-256},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SokolovZLM15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SorokinNLCDHMMS15,
  author    = {Anatoly A. Sorokin and
               Nicolas Le Nov{\`{e}}re and
               Augustin Luna and
               Tobias Czauderna and
               Emek Demir and
               Robin Haw and
               Huaiyu Mi and
               Stuart L. Moodie and
               Falk Schreiber and
               Alice Vill{\'{e}}ger},
  title     = {Systems Biology Graphical Notation: Entity Relationship language Level
               1 Version 2},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {2},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-264},
  doi       = {10.2390/biecoll-jib-2015-264},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SorokinNLCDHMMS15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TleisV15,
  author    = {Mohamed S. Tleis and
               Fons J. Verbeek},
  title     = {Machine Learning approach to discriminate Saccharomyces cerevisiae
               yeast cells using sophisticated image features},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {3},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-276},
  doi       = {10.2390/biecoll-jib-2015-276},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TleisV15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TomazzoliNMWSSC15,
  author    = {Ma{\'{\i}}ra Maciel Tomazzoli and
               Remi Dal Pai Neto and
               Rodolfo Moresco and
               Larissa Westphal and
               Am{\'{e}}lia Regina Somensi{-}Zeggio and
               Leandro Specht and
               Christopher Costa and
               Miguel Rocha and
               Marcelo Maraschin},
  title     = {Discrimination of Brazilian propolis according to the seasoning using
               chemometrics and machine learning based on UV-Vis scanning data},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {4},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-279},
  doi       = {10.2390/biecoll-jib-2015-279},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TomazzoliNMWSSC15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ValenteR15,
  author    = {Eduardo Valente and
               Miguel Rocha},
  title     = {Integrating data from heterogeneous {DNA} microarray platforms},
  journal   = {J. Integr. Bioinform.},
  volume    = {12},
  number    = {4},
  year      = {2015},
  url       = {https://doi.org/10.2390/biecoll-jib-2015-281},
  doi       = {10.2390/biecoll-jib-2015-281},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ValenteR15.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AfreixoRB14,
  author    = {Vera Afreixo and
               Jo{\~{a}}o M. O. S. Rodrigues and
               Carlos A. C. Bastos},
  title     = {Exceptional single strand {DNA} word symmetry: analysis of evolutionary
               potentialities},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {3},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-250},
  doi       = {10.2390/biecoll-jib-2014-250},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AfreixoRB14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Brimkov14,
  author    = {Boris Brimkov},
  title     = {Geometric approach to string analysis for biosequence classification},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {3},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-252},
  doi       = {10.2390/biecoll-jib-2014-252},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Brimkov14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrinkrolfJKLHBH14,
  author    = {Christoph Brinkrolf and
               Sebastian Janowski and
               Benjamin Kormeier and
               Martin Lewinski and
               Klaus Hippe and
               Daniela Borck and
               Ralf Hofest{\"{a}}dt},
  title     = {{VANESA} - {A} Software Application for the Visualization and Analysis
               of Networks in System Biology Applications},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-239},
  doi       = {10.2390/biecoll-jib-2014-239},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BrinkrolfJKLHBH14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CakirBW14,
  author    = {Mehmet Volkan Cakir and
               Hans Binder and
               Henry Wirth},
  title     = {Profiling of Genetic Switches using Boolean Implications in Expression
               Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {1},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-246},
  doi       = {10.2390/biecoll-jib-2014-246},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CakirBW14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Djordjevic14,
  author    = {Marko Djordjevic},
  title     = {Integrating Sequence Analysis with Biophysical Modelling for Accurate
               Transcription Start Site Prediction},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-240},
  doi       = {10.2390/biecoll-jib-2014-240},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Djordjevic14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/EschCWHSL14,
  author    = {Maria Esch and
               Jinbo Chen and
               Stephan Weise and
               Keywan Hassani{-}Pak and
               Uwe Scholz and
               Matthias Lange},
  title     = {A Query Suggestion Workflow for Life Science IR-Systems},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-237},
  doi       = {10.2390/biecoll-jib-2014-237},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/EschCWHSL14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FlanaganCHHNLW14,
  author    = {Keith Flanagan and
               Simon J. Cockell and
               Colin Harwood and
               Jennifer Hallinan and
               Sirintra Nakjang and
               Beth Lawry and
               Anil Wipat},
  title     = {A distributed computational search strategy for the identification
               of diagnostics targets: Application to finding aptamer targets for
               methicillin-resistant staphylococci},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-242},
  doi       = {10.2390/biecoll-jib-2014-242},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FlanaganCHHNLW14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/IerselSLKBLME14,
  author    = {Martijn P. van Iersel and
               Milka Sokolovic and
               Kaatje Lenaerts and
               Martina Kutmon and
               Freek G. Bouwman and
               Wouter H. Lamers and
               Edwin C. M. Mariman and
               Chris T. A. Evelo},
  title     = {Integrated Visualization of a Multi-omics Study of Starvation in Mouse
               Intestine},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {1},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-235},
  doi       = {10.2390/biecoll-jib-2014-235},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/IerselSLKBLME14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JanjicP14,
  author    = {Vuk Janjic and
               Natasa Przulj},
  title     = {The Topology of the Growing Human Interactome Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-238},
  doi       = {10.2390/biecoll-jib-2014-238},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JanjicP14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KlapperstuckS14,
  author    = {Matthias Klapperst{\"{u}}ck and
               Falk Schreiber},
  title     = {BioNetLink - An Architecture for Working with Network Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-241},
  doi       = {10.2390/biecoll-jib-2014-241},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KlapperstuckS14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KonigAVG14,
  author    = {Caroline K{\"{o}}nig and
               Ren{\'{e}} Alqu{\'{e}}zar and
               Alfredo Vellido and
               Jes{\'{u}}s Giraldo},
  title     = {Reducing the n-gram feature space of class {C} GPCRs to subtype-discriminating
               patterns},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {3},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-254},
  doi       = {10.2390/biecoll-jib-2014-254},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KonigAVG14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LamuriasFC14,
  author    = {Andre Lamurias and
               Jo{\~{a}}o D. Ferreira and
               Francisco M. Couto},
  title     = {Identifying interactions between chemical entities in biomedical text},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {3},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-247},
  doi       = {10.2390/biecoll-jib-2014-247},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LamuriasFC14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ListHTKMBB14,
  author    = {Markus List and
               Anne{-}Christin Hauschild and
               Qihua Tan and
               Torben Arvid Kruse and
               Jan Mollenhauer and
               Jan Baumbach and
               Richa Batra},
  title     = {Classification of Breast Cancer Subtypes by combining Gene Expression
               and {DNA} Methylation Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-236},
  doi       = {10.2390/biecoll-jib-2014-236},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ListHTKMBB14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MisirliHRBW14,
  author    = {Goksel Misirli and
               Jennifer Hallinan and
               Richard R{\"{o}}ttger and
               Jan Baumbach and
               Anil Wipat},
  title     = {BacillusRegNet: {A} transcriptional regulation database and analysis
               platform for Bacillus species},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-244},
  doi       = {10.2390/biecoll-jib-2014-244},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MisirliHRBW14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MontanolaRH14,
  author    = {Alberto Monta{\~{n}}ola and
               Concepci{\'{o}} Roig and
               Porfidio Hern{\'{a}}ndez},
  title     = {Efficient mapping of genomic sequences to optimize multiple pairwise
               alignment in hybrid cluster platforms},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {3},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-251},
  doi       = {10.2390/biecoll-jib-2014-251},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MontanolaRH14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RequenoC14,
  author    = {Jos{\'{e}} Ignacio Requeno and
               Jos{\'{e}} Manuel Colom},
  title     = {Analyzing Phylogenetic Trees with Timed and Probabilistic Model Checking:
               The Lactose Persistence Case Study},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {3},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-248},
  doi       = {10.2390/biecoll-jib-2014-248},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RequenoC14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RusakovicaHWZ14,
  author    = {Julija Rusakovica and
               Jennifer Hallinan and
               Anil Wipat and
               Paolo Zuliani},
  title     = {Probabilistic Latent Semantic Analysis Applied to Whole Bacterial
               Genomes Identifies Common Genomic Features},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {2},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-243},
  doi       = {10.2390/biecoll-jib-2014-243},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RusakovicaHWZ14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SoroushniaDPPL14,
  author    = {Shima Soroushnia and
               Masoud Daneshtalab and
               Juha Plosila and
               Tapio Pahikkala and
               Pasi Liljeberg},
  title     = {High Performance Pattern Matching on Heterogeneous Platform},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {3},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-253},
  doi       = {10.2390/biecoll-jib-2014-253},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SoroushniaDPPL14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SousaPAL14,
  author    = {Ana Margarida Sousa and
               Maria Ol{\'{\i}}via Pereira and
               Nuno F. Azevedo and
               An{\'{a}}lia Louren{\c{c}}o},
  title     = {An harmonised vocabulary for communicating and interchanging Biofilms
               experimental results},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {3},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-249},
  doi       = {10.2390/biecoll-jib-2014-249},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SousaPAL14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SrinivasG14,
  author    = {Vanishree Srinivas and
               Shubha Gopal},
  title     = {LmTDRM Database: {A} Comprehensive Database on Thiol Metabolic Gene/Gene
               Products in Listeria monocytogenes EGDe},
  journal   = {J. Integr. Bioinform.},
  volume    = {11},
  number    = {1},
  year      = {2014},
  url       = {https://doi.org/10.2390/biecoll-jib-2014-245},
  doi       = {10.2390/biecoll-jib-2014-245},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SrinivasG14.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BastosAGP13,
  author    = {Carlos A. C. Bastos and
               Vera Afreixo and
               Sara P. Garcia and
               Armando J. Pinho},
  title     = {Inter-STOP symbol distances for the identification of coding regions},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {3},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-230},
  doi       = {10.2390/biecoll-jib-2013-230},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BastosAGP13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Cardenas-GarciaP13,
  author    = {Maura C{\'{a}}rdenas{-}Garc{\'{\i}}a and
               Pedro Pablo Gonz{\'{a}}lez P{\'{e}}rez},
  title     = {Applying the Tuple Space-Based Approach to the Simulation of the Caspases,
               an Essential Signalling Pathway},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {1},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-225},
  doi       = {10.2390/biecoll-jib-2013-225},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Cardenas-GarciaP13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Castellanos-GarzonD13,
  author    = {Jos{\'{e}} A. Castellanos{-}Garz{\'{o}}n and
               Fernando D{\'{\i}}az},
  title     = {An Evolutionary and Visual Framework for Clustering of {DNA} Microarray
               Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {3},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-232},
  doi       = {10.2390/biecoll-jib-2013-232},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Castellanos-GarzonD13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Godsey13,
  author    = {Brian Godsey},
  title     = {Discovery of miR-mRNA interactions via simultaneous Bayesian inference
               of gene networks and clusters using sequence-based predictions and
               expression data},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {1},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-227},
  doi       = {10.2390/biecoll-jib-2013-227},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Godsey13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HofestadtKLSSW13,
  author    = {Ralf Hofest{\"{a}}dt and
               Benjamin Kormeier and
               Matthias Lange and
               Falk Schreiber and
               Bj{\"{o}}rn Sommer and
               Stephan Weise},
  title     = {Editorial},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {1},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-226},
  doi       = {10.2390/biecoll-jib-2013-226},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HofestadtKLSSW13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ItoISIHY13,
  author    = {Sohei Ito and
               Takuma Ichinose and
               Masaya Shimakawa and
               Naoko Izumi and
               Shigeki Hagihara and
               Naoki Yonezaki},
  title     = {Modular analysis of gene networks by linear temporal logic},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-216},
  doi       = {10.2390/biecoll-jib-2013-216},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ItoISIHY13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KellyY13,
  author    = {Cassidy Kelly and
               Hui Yang},
  title     = {A System for Extracting Study Design Parameters from Nutritional Genomics
               Abstracts},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-222},
  doi       = {10.2390/biecoll-jib-2013-222},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KellyY13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KimMC13,
  author    = {Hee Shin Kim and
               Jay E. Mittenthal and
               Gustavo Caetano{-}Anoll{\'{e}}s},
  title     = {Widespread Recruitment of Ancient Domain Structures in Modern Enzymes
               during Metabolic Evolution},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {1},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-214},
  doi       = {10.2390/biecoll-jib-2013-214},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KimMC13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LiuKL13,
  author    = {Mingming Liu and
               Vanessa King and
               Wei Keat Lim},
  title     = {Assembling cell context-specific gene sets: a case in cardiomyopathy},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {1},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-234},
  doi       = {10.2390/biecoll-jib-2013-234},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LiuKL13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LiuMYSZC13,
  author    = {Lili Liu and
               Qian Mei and
               Zhenning Yu and
               Tianhao Sun and
               Zijun Zhang and
               Ming Chen},
  title     = {An Integrative Bioinformatics Framework for Genome-scale Multiple
               Level Network Reconstruction of Rice},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-223},
  doi       = {10.2390/biecoll-jib-2013-223},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LiuMYSZC13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LoureiroCVF13,
  author    = {Tiago Loureiro and
               Rui Camacho and
               Jorge Vieira and
               Nuno A. Fonseca},
  title     = {Improving the performance of Transposable Elements detection tools},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {3},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-231},
  doi       = {10.2390/biecoll-jib-2013-231},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LoureiroCVF13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MisirliWMJPSAH13,
  author    = {Goksel Misirli and
               Anil Wipat and
               Joseph Mullen and
               Katherine James and
               Matthew R. Pocock and
               Wendy Smith and
               Nick Allenby and
               Jennifer Hallinan},
  title     = {BacillOndex: An Integrated Data Resource for Systems and Synthetic
               Biology},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-224},
  doi       = {10.2390/biecoll-jib-2013-224},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MisirliWMJPSAH13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Nacher13,
  author    = {Jose C. Nacher},
  title     = {Community structure of non-coding {RNA} interaction network},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-217},
  doi       = {10.2390/biecoll-jib-2013-217},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Nacher13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/NovakSHSK13,
  author    = {Jiri Nov{\'{a}}k and
               Timo Sachsenberg and
               David Hoksza and
               Tom{\'{a}}s Skopal and
               Oliver Kohlbacher},
  title     = {On Comparison of SimTandem with State-of-the-Art Peptide Identification
               Tools, Efficiency of Precursor Mass Filter and Dealing with Variable
               Modifications},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {3},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-228},
  doi       = {10.2390/biecoll-jib-2013-228},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/NovakSHSK13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PerezLP13,
  author    = {Mar{\'{\i}}a del Carmen P{\'{e}}rez and
               Alejandro L{\'{o}}pez and
               Pablo Padilla},
  title     = {Space-time dynamics of Stem Cell Niches: a unified approach for Plants},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-219},
  doi       = {10.2390/biecoll-jib-2013-219},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PerezLP13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PetrovKV13,
  author    = {Peter Petrov and
               Milko Krachunov and
               Dimitar Vassilev},
  title     = {A Semi-Automated Approach for Anatomical Ontology Mapping},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-221},
  doi       = {10.2390/biecoll-jib-2013-221},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PetrovKV13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RequenoC13,
  author    = {Jos{\'{e}} Ignacio Requeno and
               Jos{\'{e}} Manuel Colom},
  title     = {Model checking software for phylogenetic trees using distribution
               and database methods},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {3},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-229},
  doi       = {10.2390/biecoll-jib-2013-229},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RequenoC13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ResendeCRR13,
  author    = {Tiago Resende and
               Daniela M. Correia and
               Miguel Rocha and
               Isabel Rocha},
  title     = {Re-annotation of the genome sequence of Helicobacter pylori 26695},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {3},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-233},
  doi       = {10.2390/biecoll-jib-2013-233},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ResendeCRR13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SacarHA13,
  author    = {Muserref Duygu Sa{\c{c}}ar and
               Hamid Hamzeiy and
               Jens Allmer},
  title     = {Can MiRBase Provide Positive Data for Machine Learning for the Detection
               of MiRNA Hairpins?},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-215},
  doi       = {10.2390/biecoll-jib-2013-215},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SacarHA13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchneiderHBB13,
  author    = {Till Schneider and
               Anne{-}Christin Hauschild and
               J{\"{o}}rg Ingo Baumbach and
               Jan Baumbach},
  title     = {An Integrative Clinical Database and Diagnostics Platform for Biomarker
               Identification and Analysis in Ion Mobility Spectra of Human Exhaled
               Air},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-218},
  doi       = {10.2390/biecoll-jib-2013-218},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SchneiderHBB13.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ShiJWLSMDK013,
  author    = {Lei Shi and
               Lenneke Jong and
               Ulrike Wittig and
               Philippe Lucarelli and
               Markus Stepath and
               Stephanie M{\"{u}}ller and
               Lorenza Alice D'Alessandro and
               Ursula Klingm{\"{u}}ller and
               Wolfgang M{\"{u}}ller},
  title     = {Excemplify: {A} Flexible Template Based Solution, Parsing and Managing
               Data in Spreadsheets for Experimentalists},
  journal   = {J. Integr. Bioinform.},
  volume    = {10},
  number    = {2},
  year      = {2013},
  url       = {https://doi.org/10.2390/biecoll-jib-2013-220},
  doi       = {10.2390/biecoll-jib-2013-220},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ShiJWLSMDK013.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AdibYAH12,
  author    = {Mohd Azrul Hisham Mohd Adib and
               Mohd Fadhlan Yusof and
               Zulkifli Ahmad and
               Nur Hazreen Mohd Hasni},
  title     = {Detection of Cardiac Geometry via Difference Intensity of Echocardiogram
               Images},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-195},
  doi       = {10.2390/biecoll-jib-2012-195},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AdibYAH12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BartocciCBMV12,
  author    = {Ezio Bartocci and
               Diletta Cacciagrano and
               Maria Rita Di Berardini and
               Emanuela Merelli and
               Leonardo Vito},
  title     = {UBioLab: a web-LABoratory for Ubiquitous in-silico experiments},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {1},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-192},
  doi       = {10.2390/biecoll-jib-2012-192},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BartocciCBMV12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CaiKSC12,
  author    = {Jinlu Cai and
               Henry L. Keen and
               Curt D. Sigmund and
               Thomas L. Casavant},
  title     = {Coex-Rank: An approach incorporating co-expression information for
               combined analysis of microarray data},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {1},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-208},
  doi       = {10.2390/biecoll-jib-2012-208},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CaiKSC12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Calvo-DmgzGGMF12,
  author    = {Diego Calvo{-}Dmgz and
               Juan F. G{\'{a}}lvez and
               Daniel Glez{-}Pe{\~{n}}a and
               Silvana G{\'{o}}mez Meire and
               Florentino Fdez{-}Riverola},
  title     = {Using Variable Precision Rough Set for Selection and Classification
               of Biological Knowledge Integrated in {DNA} Gene Expression},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-199},
  doi       = {10.2390/biecoll-jib-2012-199},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Calvo-DmgzGGMF12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CarreiroFFM12,
  author    = {Andr{\'{e}} Val{\'{e}}rio Carreiro and
               Artur J. Ferreira and
               M{\'{a}}rio A. T. Figueiredo and
               Sara Cordeiro Madeira},
  title     = {Towards a Classification Approach using Meta-Biclustering: Impact
               of Discretization in the Analysis of Expression Time Series},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-207},
  doi       = {10.2390/biecoll-jib-2012-207},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CarreiroFFM12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CastilloGIG12,
  author    = {Luis Fernando Castillo and
               Narmer Galeano{-}Vanegas and
               Gustavo A. Isaza and
               {\'{A}}lvaro Gait{\'{a}}n{-}Bustamante},
  title     = {Construction of coffee transcriptome networks based on gene annotation
               semantics},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-205},
  doi       = {10.2390/biecoll-jib-2012-205},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CastilloGIG12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChengGPLLZM12,
  author    = {Jie Cheng and
               Joel Greshock and
               Jeffery Painter and
               Xiwu Lin and
               Kwan Lee and
               Shu Zheng and
               Alan Menius},
  title     = {Predicting breast cancer chemotherapeutic response using a novel tool
               for microarray data analysis},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-209},
  doi       = {10.2390/biecoll-jib-2012-209},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ChengGPLLZM12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CorreiaR12,
  author    = {Sara Correia and
               Miguel Rocha},
  title     = {In silico strain optimization by adding reactions to metabolic models},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-202},
  doi       = {10.2390/biecoll-jib-2012-202},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CorreiaR12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FlanaganNHHHPW12,
  author    = {Keith Flanagan and
               Sirintra Nakjang and
               Jennifer Hallinan and
               Colin Harwood and
               Robert P. Hirt and
               Matthew R. Pocock and
               Anil Wipat},
  title     = {Microbase2.0: {A} Generic Framework for Computationally Intensive
               Bioinformatics Workflows in the Cloud},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-212},
  doi       = {10.2390/biecoll-jib-2012-212},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FlanaganNHHHPW12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GasparCO12,
  author    = {Paulo Gaspar and
               Jaime G. Carbonell and
               Jos{\'{e}} Lu{\'{\i}}s Oliveira},
  title     = {On the parameter optimization of Support Vector Machines for binary
               classification},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-201},
  doi       = {10.2390/biecoll-jib-2012-201},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GasparCO12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GongYYL12,
  author    = {Xiujun Gong and
               Hua Yu and
               Chun{-}Bai Yang and
               Yuan{-}Fang Li},
  title     = {Knowledge Enrichment Analysis for Human Tissue-Specific Genes Uncover
               New Biological Insights},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-194},
  doi       = {10.2390/biecoll-jib-2012-194},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GongYYL12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GonzalezZBBHPVC12,
  author    = {Roberto Gonz{\'{a}}lez and
               Carolina Zato and
               Roc{\'{\i}}o Benito and
               Javier Bajo and
               Jes{\'{u}}s M. Hern{\'{a}}ndez and
               Juan Francisco de Paz and
               Vicente Vera and
               Juan M. Corchado},
  title     = {Automatic knowledge extraction in sequencing analysis with multiagent
               system and grid computing},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-206},
  doi       = {10.2390/biecoll-jib-2012-206},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GonzalezZBBHPVC12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KlukasPE12,
  author    = {Christian Klukas and
               Jean{-}Michel Pape and
               Alexander Entzian},
  title     = {Analysis of high-throughput plant image data with the information
               system {IAP}},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-191},
  doi       = {10.2390/biecoll-jib-2012-191},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KlukasPE12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LotzSW12,
  author    = {Katrin Lotz and
               Falk Schreiber and
               R{\"{o}}bbe W{\"{u}}nschiers},
  title     = {Nutrilyzer: {A} Tool for Deciphering Atomic Stoichiometry of Differentially
               Expressed Paralogous Proteins},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-196},
  doi       = {10.2390/biecoll-jib-2012-196},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LotzSW12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MehlhornLSS12,
  author    = {Hendrik Mehlhorn and
               Matthias Lange and
               Uwe Scholz and
               Falk Schreiber},
  title     = {IDPredictor: predict database links in biomedical database},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-190},
  doi       = {10.2390/biecoll-jib-2012-190},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MehlhornLSS12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/OrlovXALHYCYCOHGPN12,
  author    = {Yuriy L. Orlov and
               Han Xu and
               Dmitry A. Afonnikov and
               Bing Lim and
               Jian{-}Chien Heng and
               Ping Yuan and
               Ming Chen and
               Junli Yan and
               Neil D. Clarke and
               Nina Orlova and
               Mikael Huss and
               Konstantin V. Gunbin and
               Nikolay Podkolodnyy and
               Huck{-}Hui Ng},
  title     = {Computer and Statistical Analysis of Transcription Factor Binding
               and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-211},
  doi       = {10.2390/biecoll-jib-2012-211},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/OrlovXALHYCYCOHGPN12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RahmaniBB12,
  author    = {Hossein Rahmani and
               Hendrik Blockeel and
               Andreas Bender},
  title     = {Predicting Genes Involved in Human Cancer Using Network Contextual
               Information},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {1},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-210},
  doi       = {10.2390/biecoll-jib-2012-210},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RahmaniBB12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RamoaML12,
  author    = {Augusto Ramoa and
               Salom{\'{e}} Maia and
               An{\'{a}}lia Louren{\c{c}}o},
  title     = {A Rational Framework for Production Decision Making in Blood Establishments},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-204},
  doi       = {10.2390/biecoll-jib-2012-204},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RamoaML12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Reboiro-JatoRFVFV12,
  author    = {David Reboiro{-}Jato and
               Miguel Reboiro{-}Jato and
               Florentino Fdez{-}Riverola and
               Cristina P. Vieira and
               Nuno A. Fonseca and
               Jorge Vieira},
  title     = {{ADOPS} - Automatic Detection Of Positively Selected Sites},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-200},
  doi       = {10.2390/biecoll-jib-2012-200},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Reboiro-JatoRFVFV12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SousaFAPL12,
  author    = {Ana Margarida Sousa and
               Andreia Ferreira and
               Nuno F. Azevedo and
               Maria Ol{\'{\i}}via Pereira and
               An{\'{a}}lia Louren{\c{c}}o},
  title     = {Computational approaches to standard-compliant biofilm data for reliable
               analysis and integration},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {3},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-203},
  doi       = {10.2390/biecoll-jib-2012-203},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SousaFAPL12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SunGB12,
  author    = {Peng Sun and
               Jiong Guo and
               Jan Baumbach},
  title     = {Integrated simultaneous analysis of different biomedical data types
               with exact weighted bi-cluster editing},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-197},
  doi       = {10.2390/biecoll-jib-2012-197},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SunGB12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TredeKOTMA12,
  author    = {Dennis Trede and
               Jan Hendrik Kobarg and
               Janina Oetjen and
               Herbert Thiele and
               Peter Maass and
               Theodore Alexandrov},
  title     = {On the Importance of Mathematical Methods for Analysis of MALDI-Imaging
               Mass Spectrometry Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {1},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-189},
  doi       = {10.2390/biecoll-jib-2012-189},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TredeKOTMA12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TuCX12,
  author    = {Shikui Tu and
               Runsheng Chen and
               Lei Xu},
  title     = {Transcription Network Analysis by {A} Sparse Binary Factor Analysis
               Algorithm},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-198},
  doi       = {10.2390/biecoll-jib-2012-198},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TuCX12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WeiC12,
  author    = {Jia Wei and
               Ming Chen},
  title     = {Oncology In Vivo Data Integration for Hypothesis Generation},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-193},
  doi       = {10.2390/biecoll-jib-2012-193},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WeiC12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WuHWPRLC12,
  author    = {Xiaogang Wu and
               Hui Huang and
               Tao Wei and
               Ragini Pandey and
               Christoph Reinhard and
               Shuyu D. Li and
               Jake Y. Chen},
  title     = {Network Expansion and Pathway Enrichment Analysis towards Biologically
               Significant Findings from Microarrays},
  journal   = {J. Integr. Bioinform.},
  volume    = {9},
  number    = {2},
  year      = {2012},
  url       = {https://doi.org/10.2390/biecoll-jib-2012-213},
  doi       = {10.2390/biecoll-jib-2012-213},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WuHWPRLC12.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AkkerVHBKSR11,
  author    = {Erik van den Akker and
               Bas Verbruggen and
               Bas T. Heijmans and
               Marian Beekman and
               Joost N. Kok and
               Pieternella E. Slagboom and
               Marcel J. T. Reinders},
  title     = {Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression
               Networks improves Gene Signatures for Classifying Breast Cancer Metastasis},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-188},
  doi       = {10.2390/biecoll-jib-2011-188},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AkkerVHBKSR11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AlawiKB11,
  author    = {Malik Alawi and
               Stefan Kurtz and
               Michael Beckstette},
  title     = {CASSys: an integrated software-system for the interactive analysis
               of ChIP-seq data},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-155},
  doi       = {10.2390/biecoll-jib-2011-155},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AlawiKB11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Ascenso11,
  author    = {Rita Margarida Teixeira Ascenso},
  title     = {Bioinformatics tools help molecular characterization of Perkinsus
               olseni differentially expressed genes},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-179},
  doi       = {10.2390/biecoll-jib-2011-179},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Ascenso11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BastosAPGRF11,
  author    = {Carlos A. C. Bastos and
               Vera Afreixo and
               Armando J. Pinho and
               Sara P. Garcia and
               Jo{\~{a}}o M. O. S. Rodrigues and
               Paulo Jorge S. G. Ferreira},
  title     = {Inter-dinucleotide distances in the human genome: an analysis of the
               whole-genome and protein-coding distributions},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-172},
  doi       = {10.2390/biecoll-jib-2011-172},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BastosAPGRF11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BertensSV11,
  author    = {Laura M. F. Bertens and
               Joris Slob and
               Fons J. Verbeek},
  title     = {A generic organ based ontology system, applied to vertebrate heart
               anatomy, development and physiology},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-167},
  doi       = {10.2390/biecoll-jib-2011-167},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BertensSV11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BorrajoRIM11,
  author    = {Lourdes Borrajo and
               Rub{\'{e}}n Romero and
               Eva Lorenzo Iglesias and
               Carmen M. Redondo Marey},
  title     = {Improving imbalanced scientific text classification using sampling
               strategies and dictionaries},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-176},
  doi       = {10.2390/biecoll-jib-2011-176},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BorrajoRIM11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrandtH11,
  author    = {Bernd W. Brandt and
               Jaap Heringa},
  title     = {Protein analysis tools and services at {IBIVU}},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-168},
  doi       = {10.2390/biecoll-jib-2011-168},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BrandtH11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CamachoPCFGSB11,
  author    = {Rui Camacho and
               Max Pereira and
               V{\'{\i}}tor Santos Costa and
               Nuno A. Fonseca and
               Carlos Adriano Gon{\c{c}}alves and
               Carlos J. V. Sim{\~{o}}es and
               Rui M. M. Brito},
  title     = {A Relational Learning Approach to Structure-Activity Relationships
               in Drug Design Toxicity Studies},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-182},
  doi       = {10.2390/biecoll-jib-2011-182},
  timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CamachoPCFGSB11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CarreiroACM11,
  author    = {Andr{\'{e}} Val{\'{e}}rio Carreiro and
               Orlando Anuncia{\c{c}}{\~{a}}o and
               Jo{\~{a}}o Andr{\'{e}} Carri{\c{c}}o and
               Sara Cordeiro Madeira},
  title     = {Prognostic Prediction through Biclustering-Based Classification of
               Clinical Gene Expression Time Series},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-175},
  doi       = {10.2390/biecoll-jib-2011-175},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CarreiroACM11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CortesA11,
  author    = {Gualberto Asencio{-}Cort{\'{e}}s and
               Jes{\'{u}}s S. Aguilar{-}Ruiz},
  title     = {Predicting protein distance maps according to physicochemical properties},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-181},
  doi       = {10.2390/biecoll-jib-2011-181},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CortesA11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/EnbiyaMH11,
  author    = {Saleh Enbiya and
               Fatima Mahieddine and
               M. Alamgir Hossain},
  title     = {Model Reference Adaptive Scheme for Multi-drug Infusion for Blood
               Pressure Control},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-173},
  doi       = {10.2390/biecoll-jib-2011-173},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/EnbiyaMH11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HildebrandtWN11,
  author    = {Christian Hildebrandt and
               Sebastian Wolf and
               Steffen Neumann},
  title     = {Database supported candidate search for Metabolite identification},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-157},
  doi       = {10.2390/biecoll-jib-2011-157},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HildebrandtWN11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JiangDC11,
  author    = {Jeffrey Q. Jiang and
               Andreas W. M. Dress and
               Ming Chen},
  title     = {Retraction: Towards Prediction and Prioritization of disease genes
               by the modularity of human phenome-genome assembled network},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {1},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-154},
  doi       = {10.2390/biecoll-jib-2011-154},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JiangDC11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KolluruNHWA11,
  author    = {BalaKrishna Kolluru and
               Sirintra Nakjang and
               Robert P. Hirt and
               Anil Wipat and
               Sophia Ananiadou},
  title     = {Automatic extraction of microorganisms and their habitats from free
               text using text mining workflows},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-184},
  doi       = {10.2390/biecoll-jib-2011-184},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KolluruNHWA11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LazaPRF11,
  author    = {Rosal{\'{\i}}a Laza and
               Reyes Pav{\'{o}}n and
               Miguel Reboiro{-}Jato and
               Florentino Fdez{-}Riverola},
  title     = {Evaluating the effect of unbalanced data in biomedical document classification},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-177},
  doi       = {10.2390/biecoll-jib-2011-177},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LazaPRF11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LeskTRDM11,
  author    = {Victor Lesk and
               Jan Taubert and
               Christopher J. Rawlings and
               Stuart J. Dunbar and
               Stephen Muggleton},
  title     = {{WIBL:} Workbench for Integrative Biological Learning},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-156},
  doi       = {10.2390/biecoll-jib-2011-156},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LeskTRDM11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LinKGGBCWWLHBVML11,
  author    = {Ke Lin and
               Harrie Kools and
               Philip J. de Groot and
               Anand K. Gavai and
               Ram K. Basnet and
               Feng Cheng and
               Jian Wu and
               Xiaowu Wang and
               Arjen Lommen and
               Guido J. E. K. Hooiveld and
               Guusje Bonnema and
               Richard G. F. Visser and
               Michael R. M{\"{u}}ller and
               Jack A. M. Leunissen},
  title     = {{MADMAX} - Management and analysis database for multiple {\textasciitilde}omics
               experiments},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-160},
  doi       = {10.2390/biecoll-jib-2011-160},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LinKGGBCWWLHBVML11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Lopez-FernandezRGRSCCF11,
  author    = {Hugo L{\'{o}}pez{-}Fern{\'{a}}ndez and
               Miguel Reboiro{-}Jato and
               Daniel Glez{-}Pe{\~{n}}a and
               Jos{\'{e}} Ram{\'{o}}n M{\'{e}}ndez Reboredo and
               Hugo Miguel Santos and
               Ricardo Jorge Carreira and
               Jos{\'{e}} Luis Capelo{-}Mart{\'{\i}}nez and
               Florentino Fdez{-}Riverola},
  title     = {Rapid development of proteomic applications with the AIBench framework},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-171},
  doi       = {10.2390/biecoll-jib-2011-171},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Lopez-FernandezRGRSCCF11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LourencoCPRFR11,
  author    = {An{\'{a}}lia Louren{\c{c}}o and
               S{\'{o}}nia Carneiro and
               Jos{\'{e}} P. Pinto and
               Miguel Rocha and
               Eug{\'{e}}nio C. Ferreira and
               Isabel Rocha},
  title     = {A Study of the Short and Long-term Regulation of E. coli Metabolic
               Pathways},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-183},
  doi       = {10.2390/biecoll-jib-2011-183},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LourencoCPRFR11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LoyekBVN11,
  author    = {Christian Loyek and
               Alexander Bunkowski and
               Wolfgang Vautz and
               Tim W. Nattkemper},
  title     = {Web2.0 paves new ways for collaborative and exploratory analysis of
               chemical compounds in spectrometry data},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-158},
  doi       = {10.2390/biecoll-jib-2011-158},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LoyekBVN11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MasseroliGC11,
  author    = {Marco Masseroli and
               Giorgio Ghisalberti and
               Stefano Ceri},
  title     = {Bio-Search Computing: Integration and global ranking of bioinformatics
               search results},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-166},
  doi       = {10.2390/biecoll-jib-2011-166},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MasseroliGC11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MatosO11,
  author    = {S{\'{e}}rgio Matos and
               Jos{\'{e}} Lu{\'{\i}}s Oliveira},
  title     = {Classification methods for finding articles describing protein-protein
               interactions in PubMed},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-178},
  doi       = {10.2390/biecoll-jib-2011-178},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MatosO11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MehlhornS11,
  author    = {Hendrik Mehlhorn and
               Falk Schreiber},
  title     = {{DBE2} - Management of experimental data for the {VANTED} system},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-162},
  doi       = {10.2390/biecoll-jib-2011-162},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MehlhornS11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MohammadN11,
  author    = {Mohammad Tabrez Anwar Shamim and
               Hampapathalu A. Nagarajaram},
  title     = {A Hierarchical Approach to Protein Fold Prediction},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {1},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-185},
  doi       = {10.2390/biecoll-jib-2011-185},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MohammadN11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MorgadoPVD11,
  author    = {Lionel Morgado and
               Carlos Pereira and
               Paula Ver{\'{\i}}ssimo and
               Ant{\'{o}}nio Dourado},
  title     = {Modelling Proteolytic Enzymes With Support Vector Machines},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-170},
  doi       = {10.2390/biecoll-jib-2011-170},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MorgadoPVD11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/OlivieriFGT11,
  author    = {David N. Olivieri and
               Jos{\'{e}} Faro and
               Iv{\'{a}}n G{\'{o}}mez{-}Conde and
               Carlos E. Tadokoro},
  title     = {Tracking {T} and {B} cells from two-photon microscopy imaging using
               constrained {SMC} clusters},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-180},
  doi       = {10.2390/biecoll-jib-2011-180},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/OlivieriFGT11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Pajic11,
  author    = {Vesna Pajic},
  title     = {Putting Encyclopaedia Knowledge into Structural Form: Finite State
               Transducers Approach},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-164},
  doi       = {10.2390/biecoll-jib-2011-164},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Pajic11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ProssB11,
  author    = {Sabrina Pross and
               Bernhard Bachmann},
  title     = {An Advanced Environment for Hybrid Modeling of Biological Systems
               Based on Modelica},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {1},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-152},
  doi       = {10.2390/biecoll-jib-2011-152},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ProssB11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PurzerGBM11,
  author    = {Andreas P{\"{u}}rzer and
               Felix Grassmann and
               Dietmar Birzer and
               Rainer Merkl},
  title     = {Key2Ann: a tool to process sequence sets by replacing database identifiers
               with a human-readable annotation},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {1},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-153},
  doi       = {10.2390/biecoll-jib-2011-153},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PurzerGBM11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SilvaSPV11,
  author    = {Fernando Jos{\'{e}} Mateus da Silva and
               Juan Manuel S{\'{a}}nchez{-}P{\'{e}}rez and
               Juan Antonio G{\'{o}}mez Pulido and
               Miguel A. Vega{-}Rodr{\'{\i}}guez},
  title     = {Parallel Niche Pareto AlineaGA - an Evolutionary Multiobjective approach
               on Multiple Sequence Alignment},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {3},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-174},
  doi       = {10.2390/biecoll-jib-2011-174},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SilvaSPV11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SohXDPS11,
  author    = {Jung Soh and
               Mei Xiao and
               Thao Do and
               Oscar Meruvia Pastor and
               Christoph W. Sensen},
  title     = {Integrative Visualization of Temporally Varying Medical Image Patterns},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-161},
  doi       = {10.2390/biecoll-jib-2011-161},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SohXDPS11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SwainstonSMKP11,
  author    = {Neil Swainston and
               Kieran Smallbone and
               Pedro Mendes and
               Douglas B. Kell and
               Norman W. Paton},
  title     = {The SuBliMinaL Toolbox: automating steps in the reconstruction of
               metabolic networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-186},
  doi       = {10.2390/biecoll-jib-2011-186},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SwainstonSMKP11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SztromwasserPP11,
  author    = {Pawel Sztromwasser and
               P{\aa}l Puntervoll and
               Kjell Petersen},
  title     = {Data partitioning enables the use of standard {SOAP} Web Services
               in genome-scale workflows},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-163},
  doi       = {10.2390/biecoll-jib-2011-163},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SztromwasserPP11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TahaE11,
  author    = {Kamal Taha and
               Ramez Elmasri},
  title     = {{GMB:} An Efficient Query Processor for Biological Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-165},
  doi       = {10.2390/biecoll-jib-2011-165},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TahaE11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TurkerAS11,
  author    = {Can T{\"{u}}rker and
               Fuat Akal and
               Ralph Schlapbach},
  title     = {Life Sciences Data and Application Integration with B-Fabric},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-159},
  doi       = {10.2390/biecoll-jib-2011-159},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TurkerAS11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/UstunkarS11,
  author    = {G{\"{u}}rkan {\"{U}}st{\"{u}}nkar and
               Yesim Aydin Son},
  title     = {{METU-SNP:} An Integrated Software System for SNP-Complex Disease
               Association Analysis},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {1},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-187},
  doi       = {10.2390/biecoll-jib-2011-187},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/UstunkarS11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZhangSHJSV11,
  author    = {Yanju Zhang and
               Elia Stupka and
               Christiaan V. Henkel and
               Hans J. Jansen and
               Herman P. Spaink and
               Fons J. Verbeek},
  title     = {Identification of Common Carp Innate Immune Genes with Whole-Genome
               Sequencing and RNA-Seq Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {8},
  number    = {2},
  year      = {2011},
  url       = {https://doi.org/10.2390/biecoll-jib-2011-169},
  doi       = {10.2390/biecoll-jib-2011-169},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZhangSHJSV11.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BakerSJ10,
  author    = {Syed Murtuza Baker and
               Kai Schallau and
               Bj{\"{o}}rn H. Junker},
  title     = {Comparison of different algorithms for simultaneous estimation of
               multiple parameters in kinetic metabolic models},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-133},
  doi       = {10.2390/biecoll-jib-2010-133},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BakerSJ10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BarhBV10,
  author    = {Debmalya Barh and
               Dattatraya Bhat and
               Cedric Viero},
  title     = {miReg: a resource for microRNA regulation},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-144},
  doi       = {10.2390/biecoll-jib-2010-144},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BarhBV10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BehzadiDMSSS10,
  author    = {Mahsa Behzadi and
               Aicha Demidem and
               Daniel Morvan and
               Laurent Schwartz and
               Georges Stepien and
               Jean{-}Marc Steyaert},
  title     = {A Model of Phospholipid Biosynthesis in Tumor in Response to an Anticancer
               Agent in Vivo},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-129},
  doi       = {10.2390/biecoll-jib-2010-129},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BehzadiDMSSS10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BelmamounePV10,
  author    = {Mounia Belmamoune and
               Dome Potikanond and
               Fons J. Verbeek},
  title     = {Mining and Analysing Spatio-Temporal Patterns of Gene Expression in
               an Integrative Database Framework},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-128},
  doi       = {10.2390/biecoll-jib-2010-128},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BelmamounePV10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ButlerCFML10,
  author    = {Amy W. Butler and
               Sarah Cohen{-}woods and
               Anne Farmer and
               Peter McGuffin and
               Cathryn M. Lewis},
  title     = {Integrating Phenotypic Data For Depression},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-136},
  doi       = {10.2390/biecoll-jib-2010-136},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ButlerCFML10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CalabriaMVMM10,
  author    = {Andrea Calabria and
               Ettore Mosca and
               Federica Viti and
               Ivan Merelli and
               Luciano Milanesi},
  title     = {SNPRanker: a tool for identification and scoring of SNPs associated
               to target genes},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-138},
  doi       = {10.2390/biecoll-jib-2010-138},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CalabriaMVMM10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CockellWLWAPWYW10,
  author    = {Simon J. Cockell and
               Jochen Weile and
               Phillip W. Lord and
               Claire Wipat and
               Dmytro Andriychenko and
               Matthew R. Pocock and
               Darren J. Wilkinson and
               Malcolm Young and
               Anil Wipat},
  title     = {An integrated dataset for in silico drug discovery},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-116},
  doi       = {10.2390/biecoll-jib-2010-116},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CockellWLWAPWYW10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FoghBMVSL10,
  author    = {Rasmus H. Fogh and
               Wayne Boucher and
               John M. C. Ionides and
               Wim F. Vranken and
               Tim J. Stevens and
               Ernest D. Laue},
  title     = {{MEMOPS:} Data modelling and automatic code generation.},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-123},
  doi       = {10.2390/biecoll-jib-2010-123},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FoghBMVSL10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FrankeTK10,
  author    = {Raimo Franke and
               Fabian J. Theis and
               Steffen Klamt},
  title     = {From Binary to Multivalued to Continuous Models: The Lac Operon as
               a Case Study},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-151},
  doi       = {10.2390/biecoll-jib-2010-151},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FrankeTK10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GhisalbertiMT10,
  author    = {Giorgio Ghisalberti and
               Marco Masseroli and
               Luca Tettamanti},
  title     = {Quality controls in integrative approaches to detect errors and inconsistencies
               in biological databases},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-119},
  doi       = {10.2390/biecoll-jib-2010-119},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GhisalbertiMT10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Glez-PenaRDGPF10,
  author    = {Daniel Glez{-}Pe{\~{n}}a and
               Miguel Reboiro{-}Jato and
               Rub{\'{e}}n Dom{\'{\i}}nguez and
               Gonzalo G{\'{o}}mez{-}L{\'{o}}pez and
               David G. Pisano and
               Florentino Fdez{-}Riverola},
  title     = {PathJam: a new service for integrating biological pathway information},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-147},
  doi       = {10.2390/biecoll-jib-2010-147},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Glez-PenaRDGPF10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GrothHFHMPP10,
  author    = {Detlef Groth and
               Stefanie Hartmann and
               Martin Friemel and
               Natascha Hill and
               Stefan Muller and
               Albert J. Poustka and
               Georgia Panopoulou},
  title     = {Data integration using scanners with {SQL} output - The Bioscanners
               project at sourceforge},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-122},
  doi       = {10.2390/biecoll-jib-2010-122},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GrothHFHMPP10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HamedAP10,
  author    = {Raed I. Hamed and
               S. I. Ahson and
               Rafat Parveen},
  title     = {A New Approach for Modelling Gene Regulatory Networks Using Fuzzy
               Petri Nets},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-113},
  doi       = {10.2390/biecoll-jib-2010-113},
  timestamp = {Tue, 18 Aug 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HamedAP10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Hassani-PakLCBMR10,
  author    = {Keywan Hassani{-}Pak and
               Roxane Legaie and
               Catherine Canevet and
               Hugo Antonius van den Berg and
               Jonathan D. Moore and
               Christopher J. Rawlings},
  title     = {Enhancing Data Integration with Text Analysis to Find Proteins Implicated
               in Plant Stress Response},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-121},
  doi       = {10.2390/biecoll-jib-2010-121},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Hassani-PakLCBMR10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HeimannNK10,
  author    = {Dennis Heimann and
               Jens Nieschulze and
               Birgitta K{\"{o}}nig{-}Ries},
  title     = {A flexible statistics web processing service - Added value for information
               systems for experiment data},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-140},
  doi       = {10.2390/biecoll-jib-2010-140},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HeimannNK10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HippeCCGJKSSW10,
  author    = {Klaus Hippe and
               Christian Colmsee and
               Tobias Czauderna and
               Eva Grafahrend{-}Belau and
               Bj{\"{o}}rn H. Junker and
               Christian Klukas and
               Uwe Scholz and
               Falk Schreiber and
               Stephan Weise},
  title     = {Novel Developments of the MetaCrop Information System for Facilitating
               Systems Biological Approaches},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-125},
  doi       = {10.2390/biecoll-jib-2010-125},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HippeCCGJKSSW10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JiangDC10,
  author    = {Jeffrey Q. Jiang and
               Andreas W. M. Dress and
               Ming Chen},
  title     = {Towards prediction and prioritization of disease genes by the modularity
               of human phenome-genome assembled network},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {2},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-149},
  doi       = {10.2390/biecoll-jib-2010-149},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JiangDC10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KlukasS10,
  author    = {Christian Klukas and
               Falk Schreiber},
  title     = {Integration of -omics data and networks for biomedical research with
               {VANTED}},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {2},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-112},
  doi       = {10.2390/biecoll-jib-2010-112},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KlukasS10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KormeierHATJH10,
  author    = {Benjamin Kormeier and
               Klaus Hippe and
               Patrizio Arrigo and
               Thoralf T{\"{o}}pel and
               Sebastian Janowski and
               Ralf Hofest{\"{a}}dt},
  title     = {Reconstruction of biological networks based on life science data integration},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {2},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-146},
  doi       = {10.2390/biecoll-jib-2010-146},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KormeierHATJH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KormeierHTH10,
  author    = {Benjamin Kormeier and
               Klaus Hippe and
               Thoralf T{\"{o}}pel and
               Ralf Hofest{\"{a}}dt},
  title     = {CardioVINEdb: a data warehouse approach for integration of life science
               data in cardiovascular diseases},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-142},
  doi       = {10.2390/biecoll-jib-2010-142},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KormeierHTH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KorotkovK10,
  author    = {Eugene V. Korotkov and
               Maria A. Korotkova},
  title     = {Study of the triplet periodicity phase shifts in genes},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-131},
  doi       = {10.2390/biecoll-jib-2010-131},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KorotkovK10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LangeSBHKLWWWSS10,
  author    = {Matthias Lange and
               Karl Spies and
               Joachim Bargsten and
               Gregor Haberhauer and
               Matthias Klapperst{\"{u}}ck and
               Michael Leps and
               Christian Weinel and
               R{\"{o}}bbe W{\"{u}}nschiers and
               Mandy Wei{\ss}bach and
               Jens Stein and
               Uwe Scholz},
  title     = {The {LAILAPS} Search Engine: Relevance Ranking in Life Science Databases},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {2},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-110},
  doi       = {10.2390/biecoll-jib-2010-110},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LangeSBHKLWWWSS10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LangeSCFKS10,
  author    = {Matthias Lange and
               Karl Spies and
               Christian Colmsee and
               Steffen Flemming and
               Matthias Klapperst{\"{u}}ck and
               Uwe Scholz},
  title     = {The {LAILAPS} Search Engine: {A} Feature Model for Relevance Ranking
               in Life Science Databases},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-118},
  doi       = {10.2390/biecoll-jib-2010-118},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LangeSCFKS10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LeccaIDP10,
  author    = {Paola Lecca and
               Adaoha E. C. Ihekwaba and
               Lorenzo Dematt{\'{e}} and
               Corrado Priami},
  title     = {Stochastic simulation of the spatio-temporal dynamics of reaction-diffusion
               systems: the case for the bicoid gradient},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-150},
  doi       = {10.2390/biecoll-jib-2010-150},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LeccaIDP10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LeeDH10,
  author    = {Hang{-}mao Lee and
               Karl J. Dietz and
               Ralf Hofest{\"{a}}dt},
  title     = {Prediction of thioredoxin and glutaredoxin target proteins by identifying
               reversibly oxidized cysteinyl residues},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-130},
  doi       = {10.2390/biecoll-jib-2010-130},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LeeDH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MallikaSJS10,
  author    = {V. Mallika and
               K. C. Sivakumar and
               S. Jaichand and
               E. V. Soniya},
  title     = {Kernel based machine learning algorithm for the efficient prediction
               of type {III} polyketide synthase family of proteins},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-143},
  doi       = {10.2390/biecoll-jib-2010-143},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MallikaSJS10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MemisevicMP10,
  author    = {Vesna Memisevic and
               Tijana Milenkovic and
               Natasa Przulj},
  title     = {An integrative approach to modeling biological networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-120},
  doi       = {10.2390/biecoll-jib-2010-120},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MemisevicMP10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MemisevicMP10a,
  author    = {Vesna Memisevic and
               Tijana Milenkovic and
               Natasa Przulj},
  title     = {Complementarity of network and sequence information in homologous
               proteins},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-135},
  doi       = {10.2390/biecoll-jib-2010-135},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MemisevicMP10a.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MemonOSUH10,
  author    = {Farhat N. Memon and
               Anne M. Owen and
               Olivia Sanchez{-}Graillet and
               Graham J. G. Upton and
               Andrew P. Harrison},
  title     = {Identifying the impact of G-Quadruplexes on Affymetrix 3' Arrays using
               Cloud Computing},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {2},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-111},
  doi       = {10.2390/biecoll-jib-2010-111},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MemonOSUH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MulderKB10,
  author    = {Wim De Mulder and
               Martin Kuiper and
               Ren{\'{e}} K. Boel},
  title     = {Clustering of gene expression profiles: creating initialization-independent
               clusterings by eliminating unstable genes},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-134},
  doi       = {10.2390/biecoll-jib-2010-134},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MulderKB10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/OngNBYA10,
  author    = {Su Yean Ong and
               Fui Ling Ng and
               Siti Suriawati Badai and
               Anton Yuryev and
               Maqsudul Alam},
  title     = {Analysis and construction of pathogenicity island regulatory pathways
               in Salmonella enterica serovar Typhi},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-145},
  doi       = {10.2390/biecoll-jib-2010-145},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/OngNBYA10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/OphuizenL10,
  author    = {Ernest A. A. van Ophuizen and
               Jack A. M. Leunissen},
  title     = {An evaluation of the performance of three semantic background knowledge
               sources in comparative anatomy},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-124},
  doi       = {10.2390/biecoll-jib-2010-124},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/OphuizenL10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/QiKHBS10,
  author    = {Da Qi and
               Ross D. King and
               Andrew L. Hopkins and
               G. Richard J. Bickerton and
               Larisa N. Soldatova},
  title     = {An Ontology for Description of Drug Discovery Investigations},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-126},
  doi       = {10.2390/biecoll-jib-2010-126},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/QiKHBS10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ReV10,
  author    = {Matteo Re and
               Giorgio Valentini},
  title     = {Noise tolerance of Multiple Classifier Systems in data integration-based
               gene function prediction},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-139},
  doi       = {10.2390/biecoll-jib-2010-139},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ReV10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RowsellCLSH10,
  author    = {Joanna Rowsell and
               Renata da Silva Camargo and
               William B. Langdon and
               Maria A. Stalteri and
               Andrew P. Harrison},
  title     = {Uncovering the Expression Patterns of Chimeric Transcripts Using Surveys
               of Affymetrix GeneChips},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-137},
  doi       = {10.2390/biecoll-jib-2010-137},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RowsellCLSH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Sanchez-GrailletSRUH10,
  author    = {Olivia Sanchez{-}Graillet and
               Maria A. Stalteri and
               Joanna Rowsell and
               Graham J. G. Upton and
               Andrew P. Harrison},
  title     = {Using surveys of Affymetrix GeneChips to study antisense expression},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {2},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-114},
  doi       = {10.2390/biecoll-jib-2010-114},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Sanchez-GrailletSRUH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SchwenkSBH10,
  author    = {Bruno B. Schwenk and
               Joachim Selbig and
               Yehuda Ben{-}Zion and
               Matthias Holschneider},
  title     = {ExPlanes: Exploring Planes in Triplet Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-132},
  doi       = {10.2390/biecoll-jib-2010-132},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SchwenkSBH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SommerTKHJIBADKIKH10,
  author    = {Bj{\"{o}}rn Sommer and
               Evgeny S. Tiys and
               Benjamin Kormeier and
               Klaus Hippe and
               Sebastian Janowski and
               Timofey V. Ivanisenko and
               Anatoly O. Bragin and
               Patrizio Arrigo and
               Pavel Demenkov and
               Alexey V. Kochetov and
               Vladimir A. Ivanisenko and
               Nikolay A. Kolchanov and
               Ralf Hofest{\"{a}}dt},
  title     = {Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related
               Biological Network combining Text Mining and Data Warehouse Approaches},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-148},
  doi       = {10.2390/biecoll-jib-2010-148},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SommerTKHJIBADKIKH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SymonsZBN10,
  author    = {Stephan Symons and
               Christian Zipplies and
               Florian Battke and
               Kay Nieselt},
  title     = {Integrative Systems Biology Visualization with {MAYDAY}},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-115},
  doi       = {10.2390/biecoll-jib-2010-115},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SymonsZBN10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ThieleGH10,
  author    = {Herbert Thiele and
               J{\"{o}}rg Glandorf and
               Peter Hufnagel},
  title     = {Bioinformatics Strategies in Life Sciences: From Data Processing and
               Data Warehousing to Biological Knowledge Extraction},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {1},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-141},
  doi       = {10.2390/biecoll-jib-2010-141},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ThieleGH10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WittkopRB10,
  author    = {Tobias Wittkop and
               Sven Rahmann and
               Jan Baumbach},
  title     = {Efficient Online Transcription Factor Binding Site Adjustment by Integrating
               Transitive Graph Projection with MoRAine 2.0},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-117},
  doi       = {10.2390/biecoll-jib-2010-117},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WittkopRB10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZhangV10,
  author    = {Yanju Zhang and
               Fons J. Verbeek},
  title     = {Comparison and Integration of Target Prediction Algorithms for microRNA
               Studies},
  journal   = {J. Integr. Bioinform.},
  volume    = {7},
  number    = {3},
  year      = {2010},
  url       = {https://doi.org/10.2390/biecoll-jib-2010-127},
  doi       = {10.2390/biecoll-jib-2010-127},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZhangV10.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DobsonMCS09,
  author    = {Richard J. B. Dobson and
               Patricia B. Munroe and
               Mark J. Caulfield and
               Mansoor A. S. Saqi},
  title     = {Global sequence properties for superfamily prediction: a machine learning
               approach},
  journal   = {J. Integr. Bioinform.},
  volume    = {6},
  number    = {1},
  year      = {2009},
  url       = {https://doi.org/10.2390/biecoll-jib-2009-109},
  doi       = {10.2390/biecoll-jib-2009-109},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/DobsonMCS09.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LuoGJCM09,
  author    = {Wen Luo and
               Murali Gudipati and
               Kevin Jung and
               Mao Chen and
               Keith B. Marschke},
  title     = {Goober: {A} fully integrated and user-friendly microarray data management
               and analysis solution for core labs and bench biologists},
  journal   = {J. Integr. Bioinform.},
  volume    = {6},
  number    = {1},
  year      = {2009},
  url       = {https://doi.org/10.2390/biecoll-jib-2009-108},
  doi       = {10.2390/biecoll-jib-2009-108},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LuoGJCM09.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SaqiDKHW09,
  author    = {Mansoor A. S. Saqi and
               Richard J. B. Dobson and
               Preben Kraben and
               David A. Hodgson and
               David L. Wild},
  title     = {An approach to pathway reconstruction using whole genome metabolic
               models and sensitive sequence searching},
  journal   = {J. Integr. Bioinform.},
  volume    = {6},
  number    = {1},
  year      = {2009},
  url       = {https://doi.org/10.2390/biecoll-jib-2009-107},
  doi       = {10.2390/biecoll-jib-2009-107},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SaqiDKHW09.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BaumbachWWKR08,
  author    = {Jan Baumbach and
               Tobias Wittkop and
               Jochen Weile and
               Thomas Kohl and
               Sven Rahmann},
  title     = {MoRAine - {A} web server for fast computational transcription factor
               binding motif re-annotation},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-91},
  doi       = {10.2390/biecoll-jib-2008-91},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BaumbachWWKR08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BelmamouneV08,
  author    = {Mounia Belmamoune and
               Fons J. Verbeek},
  title     = {Data Integration for Spatio-Temporal Patterns of Gene Expression of
               Zebrafish development: the {GEMS} database},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-92},
  doi       = {10.2390/biecoll-jib-2008-92},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BelmamouneV08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BorowskiSS08,
  author    = {Krzysztof Borowski and
               Jung Soh and
               Christoph W. Sensen},
  title     = {Visual Comparison of Multiple Gene Expression Datasets in a Genomic
               Context},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-97},
  doi       = {10.2390/biecoll-jib-2008-97},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BorowskiSS08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CamargoN08,
  author    = {Renata da Silva Camargo and
               Mahesan Niranjan},
  title     = {Mining Protein Database using Machine Learning Techniques},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-106},
  doi       = {10.2390/biecoll-jib-2008-106},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CamargoN08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/EmigCKKMLA08,
  author    = {Dorothea Emig and
               Melissa S. Cline and
               Karsten Klein and
               Anne Kunert and
               Petra Mutzel and
               Thomas Lengauer and
               Mario Albrecht},
  title     = {Integrative Visual Analysis of the Effects of Alternative Splicing
               on Protein Domain Interaction Networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-101},
  doi       = {10.2390/biecoll-jib-2008-101},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/EmigCKKMLA08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FungHKSX08,
  author    = {David Cho Yau Fung and
               Seok{-}Hee Hong and
               Dirk Kosch{\"{u}}tzki and
               Falk Schreiber and
               Kai Xu},
  title     = {2.5D Visualisation of Overlapping Biological Networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {1},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-90},
  doi       = {10.2390/biecoll-jib-2008-90},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FungHKSX08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GrothHPPH08,
  author    = {Detlef Groth and
               Stefanie Hartmann and
               Georgia Panopoulou and
               Albert J. Poustka and
               Steffen Hennig},
  title     = {GOblet: Annotation of anonymous sequence data with Gene Ontology and
               Pathway terms},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-104},
  doi       = {10.2390/biecoll-jib-2008-104},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GrothHPPH08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JayashreeRHPC08,
  author    = {B. Jayashree and
               S. Rajgopal and
               David A. Hoisington and
               V. P. Prasanth and
               Subhash Chandra},
  title     = {WebStruct and VisualStruct: web interfaces and visualization for Structure
               software implemented in a cluster environment},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {1},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-89},
  doi       = {10.2390/biecoll-jib-2008-89},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JayashreeRHPC08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KhanSM08,
  author    = {Feroz Khan and
               Satarudra Prakash Singh and
               Bhartendu Nath Mishra},
  title     = {Conservation of the LexA repressor binding site in Deinococcus radiodurans},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {1},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-86},
  doi       = {10.2390/biecoll-jib-2008-86},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KhanSM08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MitraM08,
  author    = {Chanchal K. Mitra and
               Luciano Milanesi},
  title     = {An Unusal Distribution of 6-nt Sequences Near The Transcription Start
               Site},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-103},
  doi       = {10.2390/biecoll-jib-2008-103},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MitraM08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PeschLHHTRKT08,
  author    = {Robert Pesch and
               Artem Lysenko and
               Matthew Hindle and
               Keywan Hassani{-}Pak and
               Ralf Thiele and
               Christopher J. Rawlings and
               Jacob K{\"{o}}hler and
               Jan Taubert},
  title     = {Graph-based sequence annotation using a data integration approach},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-94},
  doi       = {10.2390/biecoll-jib-2008-94},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PeschLHHTRKT08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PitkanenARJU08,
  author    = {Esa Pitk{\"{a}}nen and
               Arto {\AA}kerlund and
               Ari Rantanen and
               Paula Jouhten and
               Esko Ukkonen},
  title     = {ReMatch: a web-based tool to construct, store and share stoichiometric
               metabolic models with carbon maps for metabolic flux analysis},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-102},
  doi       = {10.2390/biecoll-jib-2008-102},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PitkanenARJU08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Sanchez-GrailletRLSAUH08,
  author    = {Olivia Sanchez{-}Graillet and
               Joanna Rowsell and
               William B. Langdon and
               Maria A. Stalteri and
               Jose M. Arteaga{-}Salas and
               Graham J. G. Upton and
               Andrew P. Harrison},
  title     = {Widespread existence of uncorrelated probe intensities from within
               the same probeset on Affymetrix GeneChips},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-98},
  doi       = {10.2390/biecoll-jib-2008-98},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Sanchez-GrailletRLSAUH08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SegataBP08,
  author    = {Nicola Segata and
               Enrico Blanzieri and
               Corrado Priami},
  title     = {Towards the integration of computational systems biology and high-throughput
               data: supporting differential analysis of microarray gene expression
               data},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {1},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-87},
  doi       = {10.2390/biecoll-jib-2008-87},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SegataBP08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SevonE08,
  author    = {Petteri Sevon and
               Lauri Eronen},
  title     = {Subgraph Queries by Context-free Grammars},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-100},
  doi       = {10.2390/biecoll-jib-2008-100},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SevonE08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SunM08,
  author    = {Yudong Sun and
               Steve McKeever},
  title     = {Converting Biomolecular Modelling Data Based on an {XML} Representation},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-95},
  doi       = {10.2390/biecoll-jib-2008-95},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SunM08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TengC08,
  author    = {Li Teng and
               Laiwan Chan},
  title     = {Discovering Distinct Patterns in Gene Expression Profiles},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-105},
  doi       = {10.2390/biecoll-jib-2008-105},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TengC08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TopelKKH08,
  author    = {Thoralf T{\"{o}}pel and
               Benjamin Kormeier and
               Andreas Klassen and
               Ralf Hofest{\"{a}}dt},
  title     = {BioDWH: {A} Data Warehouse Kit for Life Science Data Integration},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-93},
  doi       = {10.2390/biecoll-jib-2008-93},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TopelKKH08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WangSL08,
  author    = {Zhenggang Wang and
               Kwok Yip Szeto and
               Frederick Chi{-}Ching Leung},
  title     = {Effectiveness of Closure of Public Places with Time Delay in Disease
               Control},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-96},
  doi       = {10.2390/biecoll-jib-2008-96},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WangSL08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/YuanL08,
  author    = {Yinyin Yuan and
               Chang{-}Tsun Li},
  title     = {A Bayes Random Field Approach for Integrative Large-Scale Regulatory
               Network Analysis},
  journal   = {J. Integr. Bioinform.},
  volume    = {5},
  number    = {2},
  year      = {2008},
  url       = {https://doi.org/10.2390/biecoll-jib-2008-99},
  doi       = {10.2390/biecoll-jib-2008-99},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/YuanL08.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AlamCSHWRHTOP07,
  author    = {Intikhab Alam and
               Mike Cornell and
               Darren M. Soanes and
               Cornelia Hedeler and
               Han Min Wong and
               Magnus Rattray and
               Simon J. Hubbard and
               Nicholas J. Talbot and
               Stephen G. Oliver and
               Norman W. Paton},
  title     = {A Methodology for Comparative Functional Genomics},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-69},
  doi       = {10.2390/biecoll-jib-2007-69},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AlamCSHWRHTOP07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AlbrechtKBBG07,
  author    = {Daniela Albrecht and
               Olaf Kniemeyer and
               Axel A. Brakhage and
               Matthias Berth and
               Reinhard Guthke},
  title     = {Integration of Transcriptome and Proteome Data from Human-Pathogenic
               Fungi by Using a Data Warehouse},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-52},
  doi       = {10.2390/biecoll-jib-2007-52},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AlbrechtKBBG07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ArraisSFCSO07,
  author    = {Joel Arrais and
               Bruno Santos and
               Jo{\~{a}}o Fernandes and
               Laura Carreto and
               Manuel A. S. Santos and
               Jos{\'{e}} Lu{\'{\i}}s Oliveira},
  title     = {GeneBrowser: an approach for integration and functional classification
               of genomics data},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-82},
  doi       = {10.2390/biecoll-jib-2007-82},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ArraisSFCSO07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BanksS07,
  author    = {Richard Banks and
               L. Jason Steggles},
  title     = {A High-Level Petri Net Framework for Genetic Regulatory Networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-60},
  doi       = {10.2390/biecoll-jib-2007-60},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BanksS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BaumbachBLOKRB07,
  author    = {Jan Baumbach and
               Alexander Bunkowski and
               Sita Lange and
               Timm Oberwahrenbrock and
               Nils Kleinb{\"{o}}lting and
               Sven Rahmann and
               J{\"{o}}rg Ingo Baumbach},
  title     = {{IMS2} - An integrated medical software system for early lung cancer
               detection using ion mobility spectrometry data of human breath},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-75},
  doi       = {10.2390/biecoll-jib-2007-75},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BaumbachBLOKRB07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BelmamouneV07,
  author    = {Mounia Belmamoune and
               Fons J. Verbeek},
  title     = {Developmental Anatomy Ontology of Zebrafish: an Integrative semantic
               framework},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-65},
  doi       = {10.2390/biecoll-jib-2007-65},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BelmamouneV07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BonoVDSGCGJLMWBS07,
  author    = {Bernard de Bono and
               Imre Vastrik and
               Peter D'Eustachio and
               Esther Schmidt and
               Gopal Gopinath and
               David Croft and
               Marc Gillespie and
               Bijay Jassal and
               Suzanna Lewis and
               Lisa Matthews and
               Guanming Wu and
               Ewan Birney and
               Lincoln Stein},
  title     = {Reactome: An integrated expert model of human molecular processes
               and access toolkit},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-84},
  doi       = {10.2390/biecoll-jib-2007-84},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BonoVDSGCGJLMWBS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChaurasiaIHHWF07,
  author    = {Gautam Chaurasia and
               Yasir Iqbal and
               Christian H{\"{a}}nig and
               Hanspeter Herzel and
               Erich E. Wanker and
               Matthias E. Futschik},
  title     = {Flexible web-based integration of distributed large-scale human protein
               interaction maps},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-51},
  doi       = {10.2390/biecoll-jib-2007-51},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ChaurasiaIHHWF07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChoiMBBESSJ07,
  author    = {Claudia Choi and
               Richard M{\"{u}}nch and
               Boyke Bunk and
               Jens Barthelmes and
               Christian Ebeling and
               Dietmar Schomburg and
               Max Schobert and
               Dieter Jahn},
  title     = {Combination of a data warehouse concept with web services for the
               establishment of the Pseudomonas systems biology database {SYSTOMONAS}},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-48},
  doi       = {10.2390/biecoll-jib-2007-48},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ChoiMBBESSJ07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FutschikCTRBH07,
  author    = {Matthias E. Futschik and
               Gautam Chaurasia and
               Anna Tschaut and
               Jenny Russ and
               M. Madan Babu and
               Hanspeter Herzel},
  title     = {Functional and Transcriptional Coherency of Modules in the Human Protein
               Interaction Network},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-76},
  doi       = {10.2390/biecoll-jib-2007-76},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FutschikCTRBH07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GaidaN07,
  author    = {Antje Gaida and
               Steffen Neumann},
  title     = {MetHouse: Raw and Preprocessed Mass Spectrometry Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-56},
  doi       = {10.2390/biecoll-jib-2007-56},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GaidaN07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HariharaputranTBH07,
  author    = {Sridhar Hariharaputran and
               Thoralf T{\"{o}}pel and
               Bj{\"{o}}rn Brockschmidt and
               Ralf Hofest{\"{a}}dt},
  title     = {VINEdb: a data warehouse for integration and interactive exploration
               of life science data},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-63},
  doi       = {10.2390/biecoll-jib-2007-63},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HariharaputranTBH07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HinneburgEP07,
  author    = {Alexander Hinneburg and
               Bj{\"{o}}rn Egert and
               Andrea Porzel},
  title     = {Duplicate detection of 2D-NMR Spectra},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-53},
  doi       = {10.2390/biecoll-jib-2007-53},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HinneburgEP07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HuntJBN07,
  author    = {Ela Hunt and
               Joanna Jakubowska and
               Caroline B{\"{o}}singer and
               Moira C. Norrie},
  title     = {Defining Mapping Mashups with BioXMash},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-64},
  doi       = {10.2390/biecoll-jib-2007-64},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HuntJBN07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/IbrahimDDS07,
  author    = {Bashar Ibrahim and
               Peter Dittrich and
               Stephan Diekmann and
               Eberhard Schmitt},
  title     = {Stochastic effects in a compartmental model for mitotic checkpoint
               regulation},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-66},
  doi       = {10.2390/biecoll-jib-2007-66},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/IbrahimDDS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JablonskiFVG07,
  author    = {Stefan Jablonski and
               Matthias F{\"{a}}rber and
               Bernhard Volz and
               Stefanie Genthner},
  title     = {Deriving biological applications from domain specific process models},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-55},
  doi       = {10.2390/biecoll-jib-2007-55},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JablonskiFVG07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JakonieneL07,
  author    = {Vaida Jakoniene and
               Patrick Lambrix},
  title     = {A Tool for Evaluating Strategies for Grouping of Biological Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-83},
  doi       = {10.2390/biecoll-jib-2007-83},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JakonieneL07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JinLC07,
  author    = {Hee{-}Jeong Jin and
               Jeong{-}Won Lee and
               Hwan{-}Gue Cho},
  title     = {A Reliable and Distributed {LIMS} for Efficient Management of the
               Microarray Experiment Environment},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-57},
  doi       = {10.2390/biecoll-jib-2007-57},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JinLC07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KarmakerYDKK07,
  author    = {Amitava Karmaker and
               Kihoon Yoon and
               Mark Doderer and
               Russell Kruzelock and
               Stephen Kwek},
  title     = {Identifying Transcription Regulatory Elements in the Human and Mouse
               Genomes Using Tissue-specific Gene Expression Profiles},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {2},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-59},
  doi       = {10.2390/biecoll-jib-2007-59},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KarmakerYDKK07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KhalidKSFWLL07,
  author    = {Sabah Khalid and
               Mohsin Khan and
               Alistair Symonds and
               Karl Fraser and
               Ping Wang and
               Xiaohui Liu and
               Suling Li},
  title     = {{CIDA:} An integrated software for the design, characterisation and
               global comparison of microarrays},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-78},
  doi       = {10.2390/biecoll-jib-2007-78},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KhalidKSFWLL07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KrebsGKMSWWR07,
  author    = {Olga Krebs and
               Martin Golebiewski and
               Renate Kania and
               Saqib Mir and
               Jasmin Saric and
               Andreas Weidemann and
               Ulrike Wittig and
               Isabel Rojas},
  title     = {{SABIO-RK:} {A} data warehouse for biochemical reactions and their
               kinetics},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-49},
  doi       = {10.2390/biecoll-jib-2007-49},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KrebsGKMSWWR07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KuenneGMSSSSSW07,
  author    = {Christian Kuenne and
               Ivo Grosse and
               Inge Matthies and
               Uwe Scholz and
               Tatjana Sretenovic{-}Rajicic and
               Nils Stein and
               Andreas Stephanik and
               Burkhard Steuernagel and
               Stephan Weise},
  title     = {Using Data Warehouse Technology in Crop Plant Bioinformatics},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-88},
  doi       = {10.2390/biecoll-jib-2007-88},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KuenneGMSSSSSW07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LangeHSS07,
  author    = {Matthias Lange and
               Axel Himmelbach and
               Patrick Schweizer and
               Uwe Scholz},
  title     = {Data Linkage Graph: computation, querying and knowledge discovery
               of life science database networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-68},
  doi       = {10.2390/biecoll-jib-2007-68},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LangeHSS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ListerPW07,
  author    = {Allyson L. Lister and
               Matthew R. Pocock and
               Anil Wipat},
  title     = {Integration of constraints documented in SBML, SBO, and the {SBML}
               Manual facilitates validation of biological models},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-80},
  doi       = {10.2390/biecoll-jib-2007-80},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ListerPW07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MottazYRV07,
  author    = {Ana{\"{\i}}s Mottaz and
               Yum Lina Yip and
               Patrick Ruch and
               Anne{-}Lise Veuthey},
  title     = {Mapping protein information to disease terminologies},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-79},
  doi       = {10.2390/biecoll-jib-2007-79},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MottazYRV07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/OesterheldMS07,
  author    = {Matthias Oesterheld and
               Hans{-}Werner Mewes and
               Volker St{\"{u}}mpflen},
  title     = {Analysis of integrated biomolecular networks using a generic network
               analysis suite},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-72},
  doi       = {10.2390/biecoll-jib-2007-72},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/OesterheldMS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RahmKL07,
  author    = {Erhard Rahm and
               Toralf Kirsten and
               J{\"{o}}rg Lange},
  title     = {The GeWare data warehouse platform for the analysisof molecular-biological
               and clinical data},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-47},
  doi       = {10.2390/biecoll-jib-2007-47},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RahmKL07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RekhaM07,
  author    = {T. Shashi Rekha and
               Chanchal K. Mitra},
  title     = {Frequency Analysis of the Splice Site Regions in Different Organisms},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {2},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-85},
  doi       = {10.2390/biecoll-jib-2007-85},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RekhaM07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ReyesG07,
  author    = {Jos{\'{e}} A. Reyes and
               David R. Gilbert},
  title     = {Prediction of protein-protein interactions using one-class classification
               methods and integrating diverse biological data},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-77},
  doi       = {10.2390/biecoll-jib-2007-77},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ReyesG07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RiccadonnaJMPQF07,
  author    = {Samantha Riccadonna and
               Giuseppe Jurman and
               Stefano Merler and
               Silvano Paoli and
               Alessandro Quattrone and
               Cesare Furlanello},
  title     = {Supervised classification of combined copy number and gene expression
               data},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-74},
  doi       = {10.2390/biecoll-jib-2007-74},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RiccadonnaJMPQF07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SamaviCKT07,
  author    = {Reza Samavi and
               Mariano P. Consens and
               Shahan Khatchadourian and
               Thodoros Topaloglou},
  title     = {Exploring {PSI-MI} {XML} Collections Using DescribeX},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-70},
  doi       = {10.2390/biecoll-jib-2007-70},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SamaviCKT07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SoucheHHCKRV07,
  author    = {Erika L. Souche and
               B. Hellemans and
               J. K. J. Van Houdt and
               A. Canario and
               S. Klages and
               R. Reinhardt and
               F. A. M. Volckaert},
  title     = {Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-73},
  doi       = {10.2390/biecoll-jib-2007-73},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SoucheHHCKRV07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/StarkEZ07,
  author    = {Konrad Stark and
               Johann Eder and
               Kurt Zatloukal},
  title     = {Achieving k-anonymity in DataMarts used for gene expressions exploitation},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-58},
  doi       = {10.2390/biecoll-jib-2007-58},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/StarkEZ07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/StrauchSSWKHZ07,
  author    = {Martin Strauch and
               Jochen Supper and
               Christian Spieth and
               Dierk Wanke and
               Joachim Kilian and
               Klaus Harter and
               Andreas Zell},
  title     = {A Two-Step Clustering for 3-D Gene Expression Data Reveals the Main
               Features of the Arabidopsis Stress Response},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-54},
  doi       = {10.2390/biecoll-jib-2007-54},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/StrauchSSWKHZ07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TaubertSHHWPRK07,
  author    = {Jan Taubert and
               Klaus Peter Sieren and
               Matthew Hindle and
               Berend Hoekman and
               Rainer Winnenburg and
               Stephan Philippi and
               Christopher J. Rawlings and
               Jacob K{\"{o}}hler},
  title     = {The {OXL} format for the exchange of integrated datasets},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-62},
  doi       = {10.2390/biecoll-jib-2007-62},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TaubertSHHWPRK07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TelgkampKSS07,
  author    = {Michael Telgkamp and
               Dirk Kosch{\"{u}}tzki and
               Henning Schw{\"{o}}bbermeyer and
               Falk Schreiber},
  title     = {Community-based Linking of Biological Network Resources: Databases,
               Formats and Tools},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-71},
  doi       = {10.2390/biecoll-jib-2007-71},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/TelgkampKSS07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WalterAH07,
  author    = {Peter Walter and
               Sam Ansari and
               Volkhard Helms},
  title     = {The {ABC} (Analysing Biomolecular Contacts)-database},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {1},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-50},
  doi       = {10.2390/biecoll-jib-2007-50},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WalterAH07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/YartsevaDKK07,
  author    = {Anastasia Yartseva and
               Raymond R. Devillers and
               Hanna Klaudel and
               Fran{\c{c}}ois K{\'{e}}p{\`{e}}s},
  title     = {From {MIN} model to ordinary differential equations},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-61},
  doi       = {10.2390/biecoll-jib-2007-61},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/YartsevaDKK07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZhangZEL07,
  author    = {Jian Zhang and
               Zhiyuan Zhao and
               Jennifer Evershed and
               Guoying Li},
  title     = {Monophyletic clustering and characterization of protein families},
  journal   = {J. Integr. Bioinform.},
  volume    = {4},
  number    = {3},
  year      = {2007},
  url       = {https://doi.org/10.2390/biecoll-jib-2007-67},
  doi       = {10.2390/biecoll-jib-2007-67},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZhangZEL07.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AndrecutK06,
  author    = {Mircea Andrecut and
               Stuart A. Kauffman},
  title     = {Noise in Genetic Toggle Switch Models},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {1},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-23},
  doi       = {10.2390/biecoll-jib-2006-23},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AndrecutK06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ApilettiBFB06,
  author    = {Daniele Apiletti and
               Giulia Bruno and
               Elisa Ficarra and
               Elena Baralis},
  title     = {Data Cleaning and Semantic Improvement in Biological Databases},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-40},
  doi       = {10.2390/biecoll-jib-2006-40},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ApilettiBFB06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BaumbachBWTR06,
  author    = {Jan Baumbach and
               Karina Brinkrolf and
               Tobias Wittkop and
               Andreas Tauch and
               Sven Rahmann},
  title     = {CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction
               and Comparison of Transcriptional Regulatory Networks in Prokaryotes},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-24},
  doi       = {10.2390/biecoll-jib-2006-24},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BaumbachBWTR06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrowneWZA06,
  author    = {Fiona Browne and
               Haiying Wang and
               Huiru Zheng and
               Francisco Azuaje},
  title     = {An assessment of machine and statistical learning approaches to inferring
               networks of protein-protein interactions},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-41},
  doi       = {10.2390/biecoll-jib-2006-41},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BrowneWZA06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Capobianco06,
  author    = {Enrico Capobianco},
  title     = {Statistical Embedding in Complex Biosystems},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-30},
  doi       = {10.2390/biecoll-jib-2006-30},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Capobianco06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CasbonS06,
  author    = {James A. Casbon and
               Mansoor A. S. Saqi},
  title     = {Functional diversity within protein superfamilies},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-46},
  doi       = {10.2390/biecoll-jib-2006-46},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CasbonS06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/EloLA06,
  author    = {Laura Elo and
               Riitta Lahesmaa and
               Tero Aittokallio},
  title     = {Inference of Gene Coexpression Networks by Integrative Analysis across
               Microarray Experiments},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-33},
  doi       = {10.2390/biecoll-jib-2006-33},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/EloLA06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FaithB06,
  author    = {Joe Faith and
               Michael J. Brockway},
  title     = {Targeted Projection Pursuit Tool for Gene Expression Visualisation},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-43},
  doi       = {10.2390/biecoll-jib-2006-43},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/FaithB06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GillespieWSPBK06,
  author    = {Colin S. Gillespie and
               Darren J. Wilkinson and
               Daryl P. Shanley and
               Carole J. Proctor and
               Richard J. Boys and
               Thomas B. L. Kirkwood},
  title     = {{BASIS:} an internet resource for network modelling},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-26},
  doi       = {10.2390/biecoll-jib-2006-26},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GillespieWSPBK06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/GuerinMCTGLBM06,
  author    = {Emilie Gu{\'{e}}rin and
               Gwena{\"{e}}lle Marquet and
               Julie Chabalier and
               Marie{-}B{\'{e}}reng{\`{e}}re Troadec and
               Christiane Guguen{-}Guillouzo and
               Olivier Lor{\'{e}}al and
               Anita Burgun and
               Fouzia Moussouni},
  title     = {Combining biomedical knowledge and transcriptomic data to extract
               new knowledge on genes},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-35},
  doi       = {10.2390/biecoll-jib-2006-35},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/GuerinMCTGLBM06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HodgmanUTD06,
  author    = {T. Charles Hodgman and
               Y. Ugartechea{-}Chirino and
               G. Tansley and
               I. Dryden},
  title     = {The implications for Bioinformatics of integration across physical
               scales},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-39},
  doi       = {10.2390/biecoll-jib-2006-39},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HodgmanUTD06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HussN06,
  author    = {Mikael Huss and
               Karin Nordstr{\"{o}}m},
  title     = {Prediction of transcription factor binding to {DNA} using rule induction
               methods},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-42},
  doi       = {10.2390/biecoll-jib-2006-42},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/HussN06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JunkerKS06,
  author    = {Bj{\"{o}}rn H. Junker and
               Dirk Kosch{\"{u}}tzki and
               Falk Schreiber},
  title     = {Kinetic Modelling with the Systems Biology Modelling Environment SyBME},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {1},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-18},
  doi       = {10.2390/biecoll-jib-2006-18},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JunkerKS06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KapsDHJKWH06,
  author    = {Andreas Kaps and
               Konstantin Dyshlevoi and
               Klaus Heumann and
               Ralf Jost and
               Ioannis Kontodinas and
               Martin Wolff and
               Jean Hani},
  title     = {The BioRS(TM) Integration and Retrieval System: An open system for
               distributed data integration},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-44},
  doi       = {10.2390/biecoll-jib-2006-44},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KapsDHJKWH06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KhalidFKWLL06,
  author    = {Sabah Khalid and
               Karl Fraser and
               Mohsin Khan and
               Ping Wang and
               Xiaohui Liu and
               Suling Li},
  title     = {Analysing Microarray Data using the Multi-functional Immune Ontologiser},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-25},
  doi       = {10.2390/biecoll-jib-2006-25},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KhalidFKWLL06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KuntzerBGBHKKL06,
  author    = {Jan K{\"{u}}ntzer and
               Torsten Blum and
               Andreas Gerasch and
               Christina Backes and
               Andreas Hildebrandt and
               Michael Kaufmann and
               Oliver Kohlbacher and
               Hans{-}Peter Lenhof},
  title     = {{BN++} - {A} Biological Information System},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-34},
  doi       = {10.2390/biecoll-jib-2006-34},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/KuntzerBGBHKKL06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MartinezPPCL06,
  author    = {Ricardo Mart{\'{\i}}nez and
               Nicolas Pasquier and
               Claude Pasquier and
               Martine Collard and
               Lucero Lopez{-}Perez},
  title     = {Co-expressed gene group analysis {(CGGA):} An automatic tool for the
               interpretation of microarray experiments},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-37},
  doi       = {10.2390/biecoll-jib-2006-37},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MartinezPPCL06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MoodieSGG06,
  author    = {Stuart L. Moodie and
               Anatoly A. Sorokin and
               Igor Goryanin and
               Peter Ghazal},
  title     = {A Graphical Notation to describe the Logical Interactions of Biological
               Pathways},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-36},
  doi       = {10.2390/biecoll-jib-2006-36},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MoodieSGG06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PittelkowW06,
  author    = {Yvonne E. Pittelkow and
               Susan R. Wilson},
  title     = {Modeling Microarray Data: Interpreting and communicating the biological
               results},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-29},
  doi       = {10.2390/biecoll-jib-2006-29},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PittelkowW06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Pospisil06,
  author    = {Heike Pospisil},
  title     = {Identification of embryo specific human isoforms using a database
               of predicted alternative splice forms},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {1},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-17},
  doi       = {10.2390/biecoll-jib-2006-17},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/Pospisil06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PrinsH06,
  author    = {B. Prins and
               Ralf Hofest{\"{a}}dt},
  title     = {{MILAN} - {A} medical information-system linking agents to metabolic
               networks},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-45},
  doi       = {10.2390/biecoll-jib-2006-45},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PrinsH06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PurutcuogluW06,
  author    = {Vilda Purut{\c{c}}uoglu and
               Ernst Wit},
  title     = {Exact and Approximate Stochastic Simulations of the {MAPK} Pathway
               and Comparisons of Simulations Results},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-38},
  doi       = {10.2390/biecoll-jib-2006-38},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PurutcuogluW06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RanganathSV06,
  author    = {Aruna Ranganath and
               K. C. Shet and
               Nagardone Vidyavathi},
  title     = {3D image and graph based Computation of Protein Surface},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {1},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-22},
  doi       = {10.2390/biecoll-jib-2006-22},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RanganathSV06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ReddyPM06,
  author    = {Ashok Reddy Dinasarapu and
               B. V. L. S. Prasad and
               Chanchal K. Mitra},
  title     = {Functional classification of transcription factor binding sites: information
               content as a metric},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {1},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-20},
  doi       = {10.2390/biecoll-jib-2006-20},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ReddyPM06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RomanoBPFMMMPSM06,
  author    = {Paolo Romano and
               Guglielmo Bertolini and
               Flavio De Paoli and
               M. Fattore and
               Domenico Marra and
               Giancarlo Mauri and
               Emanuela Merelli and
               Ivan Porro and
               Silvia Scaglione and
               Luciano Milanesi},
  title     = {Network integration of data and analysis of oncology interest},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {1},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-21},
  doi       = {10.2390/biecoll-jib-2006-21},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RomanoBPFMMMPSM06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RotherDMTGLP06,
  author    = {Kristian Rother and
               Mathias Dunkel and
               Elke Michalsky and
               Silke Tri{\ss}l and
               Andrean Goede and
               Ulf Leser and
               Robert Preissner},
  title     = {A structural keystone for drug design},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {1},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-19},
  doi       = {10.2390/biecoll-jib-2006-19},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/RotherDMTGLP06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SelpiBKC06,
  author    = {Selpi and
               Christopher H. Bryant and
               Graham J. L. Kemp and
               Marija Cvijovic},
  title     = {A First Step towards Learning which uORFs Regulate Gene Expression},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-31},
  doi       = {10.2390/biecoll-jib-2006-31},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SelpiBKC06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SteinfathRHSFS06,
  author    = {Matthias Steinfath and
               Dirk Repsilber and
               Manuela Hische and
               Nicolas Schauer and
               Alisdair R. Fernie and
               Joachim Selbig},
  title     = {Metabolite profiles as a reflection of physiological status -- a methodological
               validation},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-28},
  doi       = {10.2390/biecoll-jib-2006-28},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/SteinfathRHSFS06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/StrasserSOB06,
  author    = {Wolfgang Stra{\ss}er and
               Doris Siegl and
               Kamil {\"{O}}nder and
               Johann W. Bauer},
  title     = {InSilico Proteomics System: Integration and Application of Protein
               and Protein-Protein Interaction Data using Microsoft .NET},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-27},
  doi       = {10.2390/biecoll-jib-2006-27},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/StrasserSOB06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/StumpfT06,
  author    = {Michael P. H. Stumpf and
               Thomas Thorne},
  title     = {Multi-model inference of network properties from incomplete data},
  journal   = {J. Integr. Bioinform.},
  volume    = {3},
  number    = {2},
  year      = {2006},
  url       = {https://doi.org/10.2390/biecoll-jib-2006-32},
  doi       = {10.2390/biecoll-jib-2006-32},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/StumpfT06.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AdiF05,
  author    = {Said Sadique Adi and
               Carlos Eduardo Ferreira},
  title     = {Gene prediction by multiple syntenic alignment},
  journal   = {J. Integr. Bioinform.},
  volume    = {2},
  number    = {1},
  year      = {2005},
  url       = {https://doi.org/10.2390/biecoll-jib-2005-13},
  doi       = {10.2390/biecoll-jib-2005-13},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/AdiF05.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/JiangZ05,
  author    = {Zhenran Jiang and
               Yanhong Zhou},
  title     = {Using Gene networks to drug target identification},
  journal   = {J. Integr. Bioinform.},
  volume    = {2},
  number    = {1},
  year      = {2005},
  url       = {https://doi.org/10.2390/biecoll-jib-2005-14},
  doi       = {10.2390/biecoll-jib-2005-14},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/JiangZ05.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MalousiKM05,
  author    = {Andigoni Malousi and
               Vassilis Koutkias and
               Nicos Maglaveras},
  title     = {Managing Evidence from Multiple Gene Finding Resources via an XML-based
               Integration Architecture},
  journal   = {J. Integr. Bioinform.},
  volume    = {2},
  number    = {1},
  year      = {2005},
  url       = {https://doi.org/10.2390/biecoll-jib-2005-16},
  doi       = {10.2390/biecoll-jib-2005-16},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MalousiKM05.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PisarevPKMSR05,
  author    = {Andrei Pisarev and
               Ekaterina Poustelnikova and
               Konstantin Kozlov and
               Ekaterina M. Myasnikova and
               Maria Samsonova and
               John Reinitz},
  title     = {ImageServer, a Tool for On-line Processing and Analysis of Biological
               Images},
  journal   = {J. Integr. Bioinform.},
  volume    = {2},
  number    = {1},
  year      = {2005},
  url       = {https://doi.org/10.2390/biecoll-jib-2005-10},
  doi       = {10.2390/biecoll-jib-2005-10},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PisarevPKMSR05.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/WangCHCMTGHG05,
  author    = {Juhui Wang and
               Christophe Caron and
               Xuefeng He and
               Audrey Carpentier and
               Michel{-}Yves Mistou and
               Alain Trubuil and
               Christophe Gitton and
               C{\'{e}}line Henry and
               Alain Guillot},
  title     = {A system for integrative and post-planned analysis of 2-DE/MS centered
               proteomics data},
  journal   = {J. Integr. Bioinform.},
  volume    = {2},
  number    = {1},
  year      = {2005},
  url       = {https://doi.org/10.2390/biecoll-jib-2005-12},
  doi       = {10.2390/biecoll-jib-2005-12},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/WangCHCMTGHG05.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZellmerSGBGG05,
  author    = {Sebastian Zellmer and
               Wolfgang Schmidt{-}Heck and
               F. Gaunitz and
               A. Baldysiak{-}Figiel and
               Reinhard Guthke and
               Rolf Gebhardt},
  title     = {Dynamic Network Reconstruction from Gene Expression Data Describing
               the Effect of LiCl Stimulation on Hepatocytes},
  journal   = {J. Integr. Bioinform.},
  volume    = {2},
  number    = {1},
  year      = {2005},
  url       = {https://doi.org/10.2390/biecoll-jib-2005-15},
  doi       = {10.2390/biecoll-jib-2005-15},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZellmerSGBGG05.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ZhouGBRW05,
  author    = {Lu Zhou and
               G{\'{e}}rald Gr{\'{e}}gori and
               Jennifer Masella Blackman and
               J. Paul Robinson and
               Barry L. Wanner},
  title     = {Stochastic activation of the response regulator PhoB by noncognate
               histidine kinases},
  journal   = {J. Integr. Bioinform.},
  volume    = {2},
  number    = {1},
  year      = {2005},
  url       = {https://doi.org/10.2390/biecoll-jib-2005-11},
  doi       = {10.2390/biecoll-jib-2005-11},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/ZhouGBRW05.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BeckstetteMMSOGS04,
  author    = {Michael Beckstette and
               Jens T. Mail{\"{a}}nder and
               Richard J. Marh{\"{o}}fer and
               Alexander Sczyrba and
               Enno Ohlebusch and
               Robert Giegerich and
               Paul M. Selzer},
  title     = {Genlight: Interactive high-throughput sequence analysis and comparative
               genomics},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-8},
  doi       = {10.2390/biecoll-jib-2004-8},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BeckstetteMMSOGS04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrandesDS04,
  author    = {Ulrik Brandes and
               Tim Dwyer and
               Falk Schreiber},
  title     = {Visual Understanding of Metabolic Pathways Across Organisms Using
               Layout in Two and a Half Dimensions},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-2},
  doi       = {10.2390/biecoll-jib-2004-2},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/BrandesDS04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CollinsMP04,
  author    = {Lesley J. Collins and
               Thomas J. Macke and
               David Penny},
  title     = {Searching for ncRNAs in eukaryotic genomes: Maximizing biological
               input with RNAmotif},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-6},
  doi       = {10.2390/biecoll-jib-2004-6},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/CollinsMP04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DieterichHR04,
  author    = {Guido Dieterich and
               Dirk W. Heinz and
               Joachim Reichelt},
  title     = {Matching of {PDB} chain sequences to information in public databases
               as a prerequisite for 3D functional site visualization},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-7},
  doi       = {10.2390/biecoll-jib-2004-7},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/DieterichHR04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DunsserLSSD04,
  author    = {M. D{\"{u}}n{\ss}er and
               R. Lampidis and
               Steffen Schmidt and
               Dietmar Seipel and
               Thomas Dandekar},
  title     = {Integration of Data in Pathogenomics: Three Layers of cellular complexity
               and an XML-based Framework},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-5},
  doi       = {10.2390/biecoll-jib-2004-5},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/DunsserLSSD04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LieresPW04,
  author    = {Eric von Lieres and
               S{\"{o}}ren Petersen and
               Wolfgang Wiechert},
  title     = {A Multi-Scale Modeling Concept and Computational Tools for the Integrative
               Analysis of Stationary Metabolic Data},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-4},
  doi       = {10.2390/biecoll-jib-2004-4},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/LieresPW04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MatsuiFSMM04,
  author    = {Mika Matsui and
               Sachie Fujita and
               Shunichi Suzuki and
               Hiroshi Matsuno and
               Satoru Miyano},
  title     = {Simulated Cell Division Processes of the Xenopus Cell Cycle Pathway
               by Genomic Object Net},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-3},
  doi       = {10.2390/biecoll-jib-2004-3},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/MatsuiFSMM04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PruessKA04,
  author    = {Manuela Pruess and
               Paul J. Kersey and
               Rolf Apweiler},
  title     = {Integrating Genomic and Proteomic Data: The Integr8 Project},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-9},
  doi       = {10.2390/biecoll-jib-2004-9},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/PruessKA04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/VerscheldeSDSC04,
  author    = {Jean{-}Luc Verschelde and
               Mariana Casella dos Santos and
               Tom Deray and
               Barry Smith and
               Werner Ceusters},
  title     = {Ontology-assisted database integration to support natural language
               processing and biomedical data-mining},
  journal   = {J. Integr. Bioinform.},
  volume    = {1},
  number    = {1},
  year      = {2004},
  url       = {https://doi.org/10.2390/biecoll-jib-2004-1},
  doi       = {10.2390/biecoll-jib-2004-1},
  timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl    = {https://dblp.org/rec/journals/jib/VerscheldeSDSC04.bib},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}
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