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@article{DBLP:journals/bib/Aghaee-Bakhtiari18,
  author       = {Seyed Hamid Aghaee{-}Bakhtiari and
                  Ehsan Arefian and
                  Pierre Lau},
  title        = {miRandb: a resource of online services for miRNA research},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {254--262},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw109},
  doi          = {10.1093/BIB/BBW109},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Aghaee-Bakhtiari18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AnWLLMWZWSL18,
  author       = {Yi An and
                  Jiawei Wang and
                  Chen Li and
                  Andr{\'{e}} Leier and
                  Tatiana T. Marquez{-}Lago and
                  Jonathan Wilksch and
                  Yang Zhang and
                  Geoffrey I. Webb and
                  Jiangning Song and
                  Trevor Lithgow},
  title        = {Comprehensive assessment and performance improvement of effector protein
                  predictors for bacterial secretion systems III, {IV} and {VI}},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {148--161},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw100},
  doi          = {10.1093/BIB/BBW100},
  timestamp    = {Fri, 23 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/AnWLLMWZWSL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AuleyMS18,
  author       = {Mark Mc Auley and
                  Kathleen M. Mooney and
                  J. Enrique Salcedo{-}Sora},
  title        = {Computational modelling folate metabolism and {DNA} methylation: implications
                  for understanding health and ageing},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {303--317},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw116},
  doi          = {10.1093/BIB/BBW116},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/AuleyMS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BaoDDRZZSZWD18,
  author       = {Feng Bao and
                  Yue Deng and
                  Mulong Du and
                  Zhiquan Ren and
                  Qingzhao Zhang and
                  Yanyu Zhao and
                  Jin{-}Li Suo and
                  Zhengdong Zhang and
                  Meilin Wang and
                  Qionghai Dai},
  title        = {Probabilistic natural mapping of gene-level tests for genome-wide
                  association studies},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {545--553},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx002},
  doi          = {10.1093/BIB/BBX002},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/BaoDDRZZSZWD18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BauerZWAT18,
  author       = {Denis C. Bauer and
                  Armella Zadoorian and
                  Laurence O. W. Wilson and
                  Melbourne Genomics Health Alliance and
                  Natalie P. Thorne},
  title        = {Evaluation of computational programs to predict {HLA} genotypes from
                  genomic sequencing data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {179--187},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw097},
  doi          = {10.1093/BIB/BBW097},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BauerZWAT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BiaginiCMGFCCVM18,
  author       = {Tommaso Biagini and
                  Giovanni Chillemi and
                  Gianluigi Mazzoccoli and
                  Alessandro Grottesi and
                  Caterina Fusilli and
                  Daniele Capocefalo and
                  Stefano Castellana and
                  Angelo L. Vescovi and
                  Tommaso Mazza},
  title        = {Molecular dynamics recipes for genome research},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {853--862},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx006},
  doi          = {10.1093/BIB/BBX006},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BiaginiCMGFCCVM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BlagusG18,
  author       = {Rok Blagus and
                  Jelle J. Goeman},
  title        = {What (not) to expect when classifying rare events},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {341--349},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw107},
  doi          = {10.1093/BIB/BBW107},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BlagusG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BolgerAU18,
  author       = {Marie E. Bolger and
                  Borjana Arsova and
                  Bj{\"{o}}rn Usadel},
  title        = {Plant genome and transcriptome annotations: from misconceptions to
                  simple solutions},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {437--449},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw135},
  doi          = {10.1093/BIB/BBW135},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BolgerAU18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BottiniPGRT18,
  author       = {Silvia Bottini and
                  David Pratella and
                  Valerie Grandjean and
                  Emanuela Repetto and
                  Michele Trabucchi},
  title        = {Recent computational developments on CLIP-seq data analysis and microRNA
                  targeting implications},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1290--1301},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx063},
  doi          = {10.1093/BIB/BBX063},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BottiniPGRT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BrownHLFGMRSSTV18,
  author       = {James M. Brown and
                  Neil R. Horner and
                  Thomas N. Lawson and
                  Tanja Fiegel and
                  Simon Greenaway and
                  Hugh Morgan and
                  Natalie Ring and
                  Lu{\'{\i}}s Santos and
                  Duncan J. Sneddon and
                  Lydia Teboul and
                  Jennifer Vibert and
                  Gagarine Yaikhom and
                  Henrik Westerberg and
                  Ann{-}Marie Mallon},
  title        = {A bioimage informatics platform for high-throughput embryo phenotyping},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {41--51},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw101},
  doi          = {10.1093/BIB/BBW101},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BrownHLFGMRSSTV18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BrownP18,
  author       = {Adam S. Brown and
                  Chirag J. Patel},
  title        = {A review of validation strategies for computational drug repositioning},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {174--177},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw110},
  doi          = {10.1093/BIB/BBW110},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BrownP18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChavaliR18,
  author       = {Arvind K. Chavali and
                  Seung Y. Rhee},
  title        = {Bioinformatics tools for the identification of gene clusters that
                  biosynthesize specialized metabolites},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {1022--1034},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx020},
  doi          = {10.1093/BIB/BBX020},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ChavaliR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenGWL18,
  author       = {Junjie Chen and
                  Mingyue Guo and
                  Xiaolong Wang and
                  Bin Liu},
  title        = {A comprehensive review and comparison of different computational methods
                  for protein remote homology detection},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {231--244},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw108},
  doi          = {10.1093/BIB/BBW108},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ChenGWL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChurkinRRPWB18,
  author       = {Alexander Churkin and
                  Matan Drory Retwitzer and
                  Vladimir Reinharz and
                  Yann Ponty and
                  J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
                  Danny Barash},
  title        = {Design of RNAs: comparing programs for inverse {RNA} folding},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {350--358},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw120},
  doi          = {10.1093/BIB/BBW120},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ChurkinRRPWB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Consortium18,
  author       = {The Computational Pan{-}Genomics Consortium},
  title        = {Computational pan-genomics: status, promises and challenges},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {118--135},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw089},
  doi          = {10.1093/BIB/BBW089},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Consortium18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CuiCNWLFWWTHLC18,
  author       = {Ya Cui and
                  Xiaowei Chen and
                  Yiwei Niu and
                  Dongpeng Wang and
                  Huaxia Luo and
                  Zhen Fan and
                  Dan Wang and
                  Wei Wu and
                  XueYi Teng and
                  Shunmin He and
                  Jianjun Luo and
                  Runsheng Chen},
  title        = {Dynamic-BM: multispecies Dynamic BodyMap database from temporal RNA-seq
                  data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1302--1309},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx059},
  doi          = {10.1093/BIB/BBX059},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/CuiCNWLFWWTHLC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/DaiBHMZWWHLYXCZ18,
  author       = {Qi Dai and
                  Chaohui Bao and
                  Yabing Hai Hai and
                  Sheng Ma and
                  Tao Zhou and
                  Cong Wang and
                  Yunfei Wang and
                  Wenwen Huo and
                  Xiaoqing Liu and
                  Yuhua Yao and
                  Zhenyu Xuan and
                  Min Chen and
                  Michael Q. Zhang},
  title        = {MTGIpick allows robust identification of genomic islands from a single
                  genome},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {361--373},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw118},
  doi          = {10.1093/BIB/BBW118},
  timestamp    = {Sun, 06 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/DaiBHMZWWHLYXCZ18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/DamVGFM18,
  author       = {Sipko van Dam and
                  Urmo V{\~{o}}sa and
                  Adriaan van der Graaf and
                  Lude Franke and
                  Jo{\~{a}}o Pedro de Magalh{\~{a}}es},
  title        = {Gene co-expression analysis for functional classification and gene-disease
                  predictions},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {575--592},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw139},
  doi          = {10.1093/BIB/BBW139},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/DamVGFM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/DobaySD18,
  author       = {Maria Pamela Dobay and
                  Silke Stertz and
                  Mauro Delorenzi},
  title        = {Context-based retrieval of functional modules in protein-protein interaction
                  networks},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {995--1007},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx029},
  doi          = {10.1093/BIB/BBX029},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/DobaySD18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/DuranDTHSC18,
  author       = {Claudio Dur{\'{a}}n and
                  Simone Daminelli and
                  Josephine Maria Thomas and
                  V. Joachim Haupt and
                  Michael Schroeder and
                  Carlo Vittorio Cannistraci},
  title        = {Pioneering topological methods for network-based drug-target prediction
                  by exploiting a brain-network self-organization theory},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1183--1202},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx041},
  doi          = {10.1093/BIB/BBX041},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/DuranDTHSC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/EvansHS18,
  author       = {Ciaran Evans and
                  Johanna Hardin and
                  Daniel M. Stoebel},
  title        = {Selecting between-sample RNA-Seq normalization methods from the perspective
                  of their assumptions},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {776--792},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx008},
  doi          = {10.1093/BIB/BBX008},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/EvansHS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FanZWXHHWLLDLWW18,
  author       = {Qianrui Fan and
                  Feng Zhang and
                  Wenyu Wang and
                  Jiawen Xu and
                  Jingcan Hao and
                  Awen He and
                  Yan Wen and
                  Ping Li and
                  Xiao Liang and
                  Yanan Du and
                  Li Liu and
                  Cuiyan Wu and
                  Sen Wang and
                  Xi Wang and
                  Yujie Ning and
                  Xiong Guo},
  title        = {{GWAS} summary-based pathway analysis correcting for the genetic confounding
                  impact of environmental exposures},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {725--730},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx025},
  doi          = {10.1093/BIB/BBX025},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/FanZWXHHWLLDLWW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FangLWLC18,
  author       = {Jiansong Fang and
                  Chuang Liu and
                  Qi Wang and
                  Ping Lin and
                  Feixiong Cheng},
  title        = {In silico polypharmacology of natural products},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1153--1171},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx045},
  doi          = {10.1093/BIB/BBX045},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FangLWLC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FerrarioK18,
  author       = {Paola G. Ferrario and
                  Inke R. K{\"{o}}nig},
  title        = {Transferring entropy to the realm of GxG interactions},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {136--147},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw086},
  doi          = {10.1093/BIB/BBW086},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FerrarioK18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FinotelloMC18,
  author       = {Francesca Finotello and
                  Eleonora Mastrorilli and
                  Barbara Di Camillo},
  title        = {Measuring the diversity of the human microbiota with targeted next-generation
                  sequencing},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {679--692},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw119},
  doi          = {10.1093/BIB/BBW119},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FinotelloMC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FuHBHW18,
  author       = {Guifang Fu and
                  Mian Huang and
                  Wenhao Bo and
                  Han Hao and
                  Rongling Wu},
  title        = {Mapping morphological shape as a high-dimensional functional curve},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {461--471},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw111},
  doi          = {10.1093/BIB/BBW111},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FuHBHW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FuSHJZYTHW18,
  author       = {Liyong Fu and
                  Lidan Sun and
                  Han Hao and
                  Libo Jiang and
                  Sheng Zhu and
                  Meixia Ye and
                  Shouzheng Tang and
                  Minren Huang and
                  Rongling Wu},
  title        = {How trees allocate carbon for optimal growth: insight from a game-theoretic
                  model},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {593--602},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx003},
  doi          = {10.1093/BIB/BBX003},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FuSHJZYTHW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GalMFSVCGTSPC18,
  author       = {Jocelyn Gal and
                  G{\'{e}}rard Milano and
                  Jean{-}Marc Ferrero and
                  Esma Sa{\^{a}}da{-}Bouzid and
                  Julien Viotti and
                  Sylvie Chabaud and
                  Paul Gougis and
                  Christophe Le Tourneau and
                  Renaud Schiappa and
                  Agnes Paquet and
                  Emmanuel Chamorey},
  title        = {Optimizing drug development in oncology by clinical trial simulation:
                  Why and how?},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1203--1217},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx055},
  doi          = {10.1093/BIB/BBX055},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GalMFSVCGTSPC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GalataBLHLSPSBM18,
  author       = {Valentina Galata and
                  Christina Backes and
                  Cedric Christian Laczny and
                  Georg Hemmrich{-}Stanisak and
                  Howard Li and
                  Laura Smoot and
                  Andreas E. Posch and
                  Susanne Schmolke and
                  Markus Bischoff and
                  Lutz von M{\"{u}}ller and
                  Achim Plum and
                  Andre Franke and
                  Andreas Keller},
  title        = {Comparing genome versus proteome-based identification of clinical
                  bacterial isolates},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {495--505},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw122},
  doi          = {10.1093/BIB/BBW122},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GalataBLHLSPSBM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GaoZZ18,
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                  Jinyang Zhang and
                  Fangqing Zhao},
  title        = {Circular {RNA} identification based on multiple seed matching},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {803--810},
  year         = {2018},
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  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
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}
@article{DBLP:journals/bib/GaraliAIPSCMGDM18,
  author       = {Imene Garali and
                  Isaac M. Adanyeguh and
                  Farid Ichou and
                  Vincent Perlbarg and
                  Alexandre Seyer and
                  Benoit Colsch and
                  Ivan Moszer and
                  Vincent Guillemot and
                  Alexandra Durr and
                  Fanny Mochel and
                  Arthur Tenenhaus},
  title        = {A strategy for multimodal data integration: application to biomarkers
                  identification in spinocerebellar ataxia},
  journal      = {Briefings Bioinform.},
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  number       = {6},
  pages        = {1356--1369},
  year         = {2018},
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  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GaraliAIPSCMGDM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GelderHRBKRMH18,
  author       = {Celia W. G. van Gelder and
                  Rob W. W. Hooft and
                  Merlijn N. van Rijswijk and
                  Linda van den Berg and
                  Ruben G. Kok and
                  Marcel J. T. Reinders and
                  Barend Mons and
                  Jaap Heringa},
  title        = {Bioinformatics in the Netherlands: the value of a nationwide community},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {359},
  year         = {2018},
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  doi          = {10.1093/BIB/BBX171},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GelderHRBKRMH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GkoutosSH18,
  author       = {Georgios V. Gkoutos and
                  Paul N. Schofield and
                  Robert Hoehndorf},
  title        = {The anatomy of phenotype ontologies: principles, properties and applications},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {1008--1021},
  year         = {2018},
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  doi          = {10.1093/BIB/BBX035},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GkoutosSH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GuWHZZCZPLQZYG18,
  author       = {Yunyan Gu and
                  Ruiping Wang and
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                  Yuanyuan Zhang and
                  Fuduan Peng and
                  Haihai Liang and
                  Lishuang Qi and
                  Wenyuan Zhao and
                  Da Yang and
                  Zheng Guo},
  title        = {A landscape of synthetic viable interactions in cancer},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {644--655},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw142},
  doi          = {10.1093/BIB/BBW142},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GuWHZZCZPLQZYG18.bib},
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}
@article{DBLP:journals/bib/GuoL18,
  author       = {Li Guo and
                  Tingming Liang},
  title        = {MicroRNAs and their variants in an {RNA} world: implications for complex
                  interactions and diverse roles in an {RNA} regulatory network},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {245--253},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw124},
  doi          = {10.1093/BIB/BBW124},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GuoL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GuoZZXWC18,
  author       = {Sisi Guo and
                  Yuan Zhou and
                  Pan Zeng and
                  Guoheng Xu and
                  Guoqing Wang and
                  Qinghua Cui},
  title        = {Identification and analysis of the human sex-biased genes},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {188--198},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw125},
  doi          = {10.1093/BIB/BBW125},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GuoZZXWC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GuzziM18,
  author       = {Pietro Hiram Guzzi and
                  Tijana Milenkovic},
  title        = {Survey of local and global biological network alignment: the need
                  to reconcile the two sides of the same coin},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {472--481},
  year         = {2018},
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  doi          = {10.1093/BIB/BBW132},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GuzziM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HaoZNCLHZZQYC18,
  author       = {Yajing Hao and
                  Lili Zhang and
                  Yiwei Niu and
                  Tanxi Cai and
                  Jianjun Luo and
                  Shunmin He and
                  Bao Zhang and
                  Dejiu Zhang and
                  Yan Qin and
                  Fuquan Yang and
                  Runsheng Chen},
  title        = {SmProt: a database of small proteins encoded by annotated coding and
                  non-coding {RNA} loci},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {636--643},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx005},
  doi          = {10.1093/BIB/BBX005},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HaoZNCLHZZQYC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HeatherIOC18,
  author       = {James M. Heather and
                  Mazlina Ismail and
                  Theres Oakes and
                  Benny Chain},
  title        = {High-throughput sequencing of the T-cell receptor repertoire: pitfalls
                  and opportunities},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {554--565},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw138},
  doi          = {10.1093/BIB/BBW138},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HeatherIOC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HenkelHKKLW18,
  author       = {Ron Henkel and
                  Robert Hoehndorf and
                  Tim Kacprowski and
                  Christian Kn{\"{u}}pfer and
                  Wolfram Liebermeister and
                  Dagmar Waltemath},
  title        = {Notions of similarity for systems biology models},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {77--88},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw090},
  doi          = {10.1093/BIB/BBW090},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HenkelHKKLW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HongLLZLCCG18,
  author       = {Guini Hong and
                  Hongdong Li and
                  Mengyao Li and
                  Weicheng Zheng and
                  Jing Li and
                  Meirong Chi and
                  Jun Cheng and
                  Zheng Guo},
  title        = {A simple way to detect disease-associated cellular molecular alterations
                  from mixed-cell blood samples},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {613--621},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx009},
  doi          = {10.1093/BIB/BBX009},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HongLLZLCCG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Huang18,
  author       = {Sheng{-}You Huang},
  title        = {Comprehensive assessment of flexible-ligand docking algorithms: current
                  effectiveness and challenges},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {982--994},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx030},
  doi          = {10.1093/BIB/BBX030},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Huang18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KarimMZBSR18,
  author       = {Md. Rezaul Karim and
                  Audrey M. Michel and
                  Achille Zappa and
                  Pavel V. Baranov and
                  Ratnesh Sahay and
                  Dietrich Rebholz{-}Schuhmann},
  title        = {Improving data workflow systems with cloud services and use of open
                  data for bioinformatics research},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {1035--1050},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx039},
  doi          = {10.1093/BIB/BBX039},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KarimMZBSR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KarimzadehH18,
  author       = {Mehran Karimzadeh and
                  Michael M. Hoffman},
  title        = {Top considerations for creating bioinformatics software documentation},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {693--699},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw134},
  doi          = {10.1093/BIB/BBW134},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KarimzadehH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KhanKKK18,
  author       = {Abdul Arif Khan and
                  Zakir Khan and
                  Mohd Abul Kalam and
                  Azmat Ali Khan},
  title        = {Inter-kingdom prediction certainty evaluation of protein subcellular
                  localization tools: microbial pathogenesis approach for deciphering
                  host microbe interaction},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {12--22},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw093},
  doi          = {10.1093/BIB/BBW093},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KhanKKK18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KhomtchoukWKW18,
  author       = {Bohdan B. Khomtchouk and
                  Edmund Weitz and
                  Peter D. Karp and
                  Claes Wahlestedt},
  title        = {How the strengths of Lisp-family languages facilitate building complex
                  and flexible bioinformatics applications},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {537--543},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw130},
  doi          = {10.1093/BIB/BBW130},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KhomtchoukWKW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Kilicoglu18,
  author       = {Halil Kilicoglu},
  title        = {Biomedical text mining for research rigor and integrity: tasks, challenges,
                  directions},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1400--1414},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx057},
  doi          = {10.1093/BIB/BBX057},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Kilicoglu18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KimJZ18,
  author       = {Pora Kim and
                  Peilin Jia and
                  Zhongming Zhao},
  title        = {Kinase impact assessment in the landscape of fusion genes that retain
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  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {450--460},
  year         = {2018},
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  doi          = {10.1093/BIB/BBW127},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KimJZ18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KuosmanenNM18,
  author       = {Anna Kuosmanen and
                  Tuukka Norri and
                  Veli M{\"{a}}kinen},
  title        = {Evaluating approaches to find exon chains based on long reads},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {404--414},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw137},
  doi          = {10.1093/BIB/BBW137},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KuosmanenNM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LeiXLLFZHXGCCCH18,
  author       = {Lijun Lei and
                  Siyu Xia and
                  Dan Liu and
                  Xiaoqing Li and
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                  Jun Hu and
                  Linjian Xia and
                  Lieping Guo and
                  Fei Chen and
                  Hui Cheng and
                  Ke Chen and
                  Hanyang Hu and
                  Xiaohua Chen and
                  Feng Li and
                  Shan Zhong and
                  Nupur Mittal and
                  Guohua Yang and
                  Zhijian Qian and
                  Leng Han and
                  Chunjiang He},
  title        = {Genome-wide characterization of lncRNAs in acute myeloid leukemia},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {627--635},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx007},
  doi          = {10.1093/BIB/BBX007},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LeiXLLFZHXGCCCH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiSZSG18,
  author       = {Chung{-}I Li and
                  David C. Samuels and
                  Ying{-}Yong Zhao and
                  Yu Shyr and
                  Yan Guo},
  title        = {Power and sample size calculations for high-throughput sequencing-based
                  experiments},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1247--1255},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx061},
  doi          = {10.1093/BIB/BBX061},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LiSZSG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiTDZHO18,
  author       = {Jun Li and
                  Cui Tai and
                  Zixin Deng and
                  Weihong Zhong and
                  Yongqun He and
                  Hong{-}Yu Ou},
  title        = {VRprofile: gene-cluster-detection-based profiling of virulence and
                  antibiotic resistance traits encoded within genome sequences of pathogenic
                  bacteria},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {566--574},
  year         = {2018},
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  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiTDZHO18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiWN18,
  author       = {Yifeng Li and
                  Fang{-}Xiang Wu and
                  Alioune Ngom},
  title        = {A review on machine learning principles for multi-view biological
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  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {325--340},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw113},
  doi          = {10.1093/BIB/BBW113},
  timestamp    = {Mon, 28 Nov 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LiWN18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiZHH18,
  author       = {Shengli Li and
                  Jiwei Zhang and
                  Shenglin Huang and
                  Xianghuo He},
  title        = {Genome-wide analysis reveals that exon methylation facilitates its
                  selective usage in the human transcriptome},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {754--764},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx019},
  doi          = {10.1093/BIB/BBX019},
  timestamp    = {Mon, 04 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiZHH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiangK18,
  author       = {Yulan Liang and
                  Arpad Kelemen},
  title        = {Dynamic modeling and network approaches for omics time course data:
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  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {1051--1068},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx036},
  doi          = {10.1093/BIB/BBX036},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiangK18.bib},
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}
@article{DBLP:journals/bib/LiuYLMM18,
  author       = {Bingqiang Liu and
                  Jinyu Yang and
                  Yang Li and
                  Adam McDermaid and
                  Qin Ma},
  title        = {An algorithmic perspective of de novo cis-regulatory motif finding
                  based on ChIP-seq data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {1069--1081},
  year         = {2018},
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  doi          = {10.1093/BIB/BBX026},
  timestamp    = {Wed, 16 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/LiuYLMM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuZCWXLLHNJ18,
  author       = {Di Liu and
                  Linna Zhao and
                  Yang Chen and
                  Zhaoyang Wang and
                  Jing Xu and
                  Ying Li and
                  Changgui Lei and
                  Simeng Hu and
                  Miaomiao Niu and
                  Yongshuai Jiang},
  title        = {Comparison of the general co-expression landscapes between human and
                  mouse},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {811--820},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx024},
  doi          = {10.1093/BIB/BBX024},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiuZCWXLLHNJ18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MagiSMGD18,
  author       = {Alberto Magi and
                  Roberto Semeraro and
                  Alessandra Mingrino and
                  Betti Giusti and
                  Romina D'Aurizio},
  title        = {Nanopore sequencing data analysis: state of the art, applications
                  and challenges},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1256--1272},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx062},
  doi          = {10.1093/BIB/BBX062},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MagiSMGD18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ManzoniKVHWLF18,
  author       = {Claudia Manzoni and
                  Demis A. Kia and
                  Jana Vandrovcova and
                  John Hardy and
                  Nicholas W. Wood and
                  Patrick A. Lewis and
                  Raffaele Ferrari},
  title        = {Genome, transcriptome and proteome: the rise of omics data and their
                  integration in biomedical sciences},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {286--302},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw114},
  doi          = {10.1093/BIB/BBW114},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ManzoniKVHWLF18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MarshHSMHM18,
  author       = {James W. Marsh and
                  Regan J. Hayward and
                  Amol Carl Shetty and
                  Anup Mahurkar and
                  Michael S. Humphrys and
                  Garry S. A. Myers},
  title        = {Bioinformatic analysis of bacteria and host cell dual RNA-sequencing
                  experiments},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1115--1129},
  year         = {2018},
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  doi          = {10.1093/BIB/BBX043},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MarshHSMHM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MazanduCRZGOM18,
  author       = {Gaston K. Mazandu and
                  Emile R. Chimusa and
                  Kayleigh Rutherford and
                  Elsa{-}Gayle Zekeng and
                  Zoe Z. Gebremariam and
                  Maryam Y. Onifade and
                  Nicola J. Mulder},
  title        = {Large-scale data-driven integrative framework for extracting essential
                  targets and processes from disease-associated gene data sets},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1141--1152},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx052},
  doi          = {10.1093/BIB/BBX052},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/MazanduCRZGOM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MiottoWWJD18,
  author       = {Riccardo Miotto and
                  Fei Wang and
                  Shuang Wang and
                  Xiaoqian Jiang and
                  Joel T. Dudley},
  title        = {Deep learning for healthcare: review, opportunities and challenges},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1236--1246},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx044},
  doi          = {10.1093/BIB/BBX044},
  timestamp    = {Wed, 01 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MiottoWWJD18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MohammedP18,
  author       = {Yassene Mohammed and
                  Magnus Palmblad},
  title        = {Visualizing and comparing results of different peptide identification
                  methods},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {210--218},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw115},
  doi          = {10.1093/BIB/BBW115},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MohammedP18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MotazediFMR18,
  author       = {Ehsan Motazedi and
                  Richard Finkers and
                  Chris Maliepaard and
                  Dick de Ridder},
  title        = {Exploiting next-generation sequencing to solve the haplotyping puzzle
                  in polyploids: a simulation study},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {387--403},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw126},
  doi          = {10.1093/BIB/BBW126},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MotazediFMR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MusaGZGYDHE18,
  author       = {Aliyu Musa and
                  Laleh Soltan Ghoraie and
                  Shu{-}Dong Zhang and
                  Galina V. Glazko and
                  Olli Yli{-}Harja and
                  Matthias Dehmer and
                  Benjamin Haibe{-}Kains and
                  Frank Emmert{-}Streib},
  title        = {A review of connectivity map and computational approaches in pharmacogenomics},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {506--523},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw112},
  doi          = {10.1093/BIB/BBW112},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MusaGZGYDHE18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MuthR18,
  author       = {Thilo Muth and
                  Bernhard Y. Renard},
  title        = {Evaluating de novo sequencing in proteomics: already an accurate alternative
                  to database-driven peptide identification?},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {954--970},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx033},
  doi          = {10.1093/BIB/BBX033},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MuthR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NgRWG18,
  author       = {Felicia S. L. Ng and
                  David Ruau and
                  Lorenz Wernisch and
                  Berthold G{\"{o}}ttgens},
  title        = {A graphical model approach visualizes regulatory relationships between
                  genome-wide transcription factor binding profiles},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {162--173},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw102},
  doi          = {10.1093/BIB/BBW102},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/NgRWG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NiuYMZK018,
  author       = {Sheng{-}Yong Niu and
                  Jinyu Yang and
                  Adam McDermaid and
                  Jing Zhao and
                  Yu Kang and
                  Qin Ma},
  title        = {Bioinformatics tools for quantitative and functional metagenome and
                  metatranscriptome data analysis in microbes},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1415--1429},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx051},
  doi          = {10.1093/BIB/BBX051},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/NiuYMZK018.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NiuYMZKM18,
  author       = {Sheng{-}Yong Niu and
                  Jinyu Yang and
                  Adam McDermaid and
                  Jing Zhao and
                  Yu Kang and
                  Qin Ma},
  title        = {Bioinformatics tools for quantitative and functional metagenome and
                  metatranscriptome data analysis in microbes},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {360},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bby012},
  doi          = {10.1093/BIB/BBY012},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/NiuYMZKM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OBrienGQ18,
  author       = {Jonathon J. O'Brien and
                  Harsha P. Gunawardena and
                  Bahjat F. Qaqish},
  title        = {Row versus column correlations: avoiding the ecological fallacy in
                  RNA/protein expression studies},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {946--953},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx021},
  doi          = {10.1093/BIB/BBX021},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/OBrienGQ18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OoijenJEHABH18,
  author       = {Michiel P. van Ooijen and
                  Victor L. Jong and
                  Marinus J. C. Eijkemans and
                  Albert J. R. Heck and
                  Arno C. Andeweg and
                  Nadine A. Binai and
                  Henk{-}Jan van den Ham},
  title        = {Identification of differentially expressed peptides in high-throughput
                  proteomics data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {971--981},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx031},
  doi          = {10.1093/BIB/BBX031},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/OoijenJEHABH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PappalardoRM18,
  author       = {Francesco Pappalardo and
                  Abdul Mateen Rajput and
                  Santo Motta},
  title        = {Computational modeling of brain pathologies: the case of multiple
                  sclerosis},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {318--324},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw123},
  doi          = {10.1093/BIB/BBW123},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/PappalardoRM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ParicharakMRBIW18,
  author       = {Shardul Paricharak and
                  Oscar M{\'{e}}ndez{-}Lucio and
                  Aakash Chavan Ravindranath and
                  Andreas Bender and
                  Adriaan P. IJzerman and
                  Gerard J. P. van Westen},
  title        = {Data-driven approaches used for compound library design, hit triage
                  and bioactivity modeling in high-throughput screening},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {277--285},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw105},
  doi          = {10.1093/BIB/BBW105},
  timestamp    = {Tue, 31 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ParicharakMRBIW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PaschoalLDS18,
  author       = {Alexandre Rossi Paschoal and
                  Irma Lozada{-}Ch{\'{a}}vez and
                  Douglas Silva Domingues and
                  Peter F. Stadler},
  title        = {ceRNAs in plants: computational approaches and associated challenges
                  for target mimic research},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1273--1289},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx058},
  doi          = {10.1093/BIB/BBX058},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/PaschoalLDS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PoplawskiB18,
  author       = {Alicia Poplawski and
                  Harald Binder},
  title        = {Feasibility of sample size calculation for RNA-seq studies},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {713--720},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw144},
  doi          = {10.1093/BIB/BBW144},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/PoplawskiB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/RauM18,
  author       = {Andrea Rau and
                  Cathy Maugis{-}Rabusseau},
  title        = {Transformation and model choice for RNA-seq co-expression analysis},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {425--436},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw128},
  doi          = {10.1093/BIB/BBW128},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/RauM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/RigaillBBBRRCMT18,
  author       = {Guillem Rigaill and
                  Sandrine Balzergue and
                  V{\'{e}}ronique Brunaud and
                  Eddy Blondet and
                  Andrea Rau and
                  Odile Rogier and
                  Jos{\'{e}} Caius and
                  Cathy Maugis{-}Rabusseau and
                  Ludivine Taconnat and
                  S{\'{e}}bastien Aubourg and
                  Claire Lurin and
                  Marie{-}Laure Martin{-}Magniette and
                  Etienne Delannoy},
  title        = {Synthetic data sets for the identification of key ingredients for
                  RNA-seq differential analysis},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {65--76},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw092},
  doi          = {10.1093/BIB/BBW092},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/RigaillBBBRRCMT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/RogozinPGDLPPC18,
  author       = {Igor B. Rogozin and
                  Youri I. Pavlov and
                  Alexander Goncearenco and
                  Subhajyoti De and
                  Artem G. Lada and
                  Eugenia Poliakov and
                  Anna R. Panchenko and
                  David N. Cooper},
  title        = {Mutational signatures and mutable motifs in cancer genomes},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1085--1101},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx049},
  doi          = {10.1093/BIB/BBX049},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/RogozinPGDLPPC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShafiMND18,
  author       = {Adib Shafi and
                  Cristina Mitrea and
                  Tin Chi Nguyen and
                  Sorin Draghici},
  title        = {A survey of the approaches for identifying differential methylation
                  using bisulfite sequencing data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {737--753},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx013},
  doi          = {10.1093/BIB/BBX013},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ShafiMND18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShahrezaGMVG18,
  author       = {Maryam Lotfi Shahreza and
                  Nasser Ghadiri and
                  Sayed Rasoul Mousavi and
                  Jaleh Varshosaz and
                  James R. Green},
  title        = {A review of network-based approaches to drug repositioning},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {878--892},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx017},
  doi          = {10.1093/BIB/BBX017},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ShahrezaGMVG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShameerGHJBRTOM18,
  author       = {Khader Shameer and
                  Benjamin S. Glicksberg and
                  Rachel Hodos and
                  Kipp W. Johnson and
                  Marcus A. Badgeley and
                  Ben Readhead and
                  Max S. Tomlinson and
                  Timothy O'Connor and
                  Riccardo Miotto and
                  Brian A. Kidd and
                  Rong Chen and
                  Avi Ma'ayan and
                  Joel T. Dudley},
  title        = {Systematic analyses of drugs and disease indications in RepurposeDB
                  reveal pharmacological, biological and epidemiological factors influencing
                  drug repositioning},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {656--678},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw136},
  doi          = {10.1093/BIB/BBW136},
  timestamp    = {Tue, 28 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ShameerGHJBRTOM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShengSYTC18,
  author       = {Zhen Sheng and
                  Yi Sun and
                  Zuojing Yin and
                  Kailin Tang and
                  Zhiwei Cao},
  title        = {Advances in computational approaches in identifying synergistic drug
                  combinations},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1172--1182},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx047},
  doi          = {10.1093/BIB/BBX047},
  timestamp    = {Sun, 12 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ShengSYTC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SohnN18,
  author       = {Jang{-}il Sohn and
                  Jin{-}Wu Nam},
  title        = {The present and future of de novo whole-genome assembly},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {23--40},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw096},
  doi          = {10.1093/BIB/BBW096},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SohnN18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Stadtlander18,
  author       = {Christian T. K.{-}H. Stadtl{\"{a}}nder},
  title        = {Next-generation sequencing data analysis},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {1082--1083},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx038},
  doi          = {10.1093/BIB/BBX038},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Stadtlander18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SunH18,
  author       = {Xiaoqiang Sun and
                  Bin Hu},
  title        = {Mathematical modeling and computational prediction of cancer drug
                  resistance},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1382--1399},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx065},
  doi          = {10.1093/BIB/BBX065},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SunH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SunSZWSLGCZW18,
  author       = {Lidan Sun and
                  Mengmeng Sang and
                  Chenfei Zheng and
                  Dongyang Wang and
                  Hexin Shi and
                  Kaiyue Liu and
                  Yanfang Guo and
                  Tangren Cheng and
                  Qixiang Zhang and
                  Rongling Wu},
  title        = {The genetic architecture of heterochrony as a quantitative trait:
                  lessons from a computational model},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1430--1439},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx056},
  doi          = {10.1093/BIB/BBX056},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SunSZWSLGCZW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
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@article{DBLP:journals/bib/SunWZJGSSCZW18,
  author       = {Lidan Sun and
                  Jing Wang and
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                  Libo Jiang and
                  Kirk Gosik and
                  Mengmeng Sang and
                  Fengsuo Sun and
                  Tangren Cheng and
                  Qixiang Zhang and
                  Rongling Wu},
  title        = {HpQTL: a geometric morphometric platform to compute the genetic architecture
                  of heterophylly},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {603--612},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx011},
  doi          = {10.1093/BIB/BBX011},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SunWZJGSSCZW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TianYKKS18,
  author       = {Shulan Tian and
                  Huihuang Yan and
                  Eric W. Klee and
                  Michael Kalmbach and
                  Susan L. Slager},
  title        = {Comparative analysis of de novo assemblers for variation discovery
                  in personal genomes},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {893--904},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx037},
  doi          = {10.1093/BIB/BBX037},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/TianYKKS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TichyPBS18,
  author       = {Diana Tichy and
                  Julia Maria Anna Pickl and
                  Axel Benner and
                  Holger S{\"{u}}ltmann},
  title        = {Experimental design and data analysis of Ago-RIP-Seq experiments for
                  the identification of microRNA targets},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {918--929},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx032},
  doi          = {10.1093/BIB/BBX032},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/TichyPBS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TonekaboniGMH18,
  author       = {Seyed Ali Madani Tonekaboni and
                  Laleh Soltan Ghoraie and
                  Venkata Satya Kumar Manem and
                  Benjamin Haibe{-}Kains},
  title        = {Predictive approaches for drug combination discovery in cancer},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {263--276},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw104},
  doi          = {10.1093/BIB/BBW104},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/TonekaboniGMH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ValikangasSE18,
  author       = {Tommi V{\"{a}}likangas and
                  Tomi Suomi and
                  Laura L. Elo},
  title        = {A systematic evaluation of normalization methods in quantitative label-free
                  proteomics},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {1--11},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw095},
  doi          = {10.1093/BIB/BBW095},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ValikangasSE18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ValikangasSE18a,
  author       = {Tommi V{\"{a}}likangas and
                  Tomi Suomi and
                  Laura L. Elo},
  title        = {A comprehensive evaluation of popular proteomics software workflows
                  for label-free proteome quantification and imputation},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1344--1355},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx054},
  doi          = {10.1093/BIB/BBX054},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ValikangasSE18a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/VijayakumarCLA18,
  author       = {Supreeta Vijayakumar and
                  Maxwell Conway and
                  Pietro Li{\'{o}} and
                  Claudio Angione},
  title        = {Seeing the wood for the trees: a forest of methods for optimization
                  and omic-network integration in metabolic modelling},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1218--1235},
  year         = {2018},
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  doi          = {10.1093/BIB/BBX053},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/VijayakumarCLA18.bib},
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}
@article{DBLP:journals/bib/VilarFH18,
  author       = {Santiago Vilar and
                  Carol Friedman and
                  George Hripcsak},
  title        = {Detection of drug-drug interactions through data mining studies using
                  clinical sources, scientific literature and social media},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {863--877},
  year         = {2018},
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  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/VilarFH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Wang18,
  author       = {Dapeng Wang},
  title        = {hppRNA - a Snakemake-based handy parameter-free pipeline for RNA-Seq
                  analysis of numerous samples},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {622--626},
  year         = {2018},
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  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangCZ18,
  author       = {Xuefeng Wang and
                  Hao Chen and
                  Nancy Ruonan Zhang},
  title        = {{DNA} copy number profiling using single-cell sequencing},
  journal      = {Briefings Bioinform.},
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  year         = {2018},
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  doi          = {10.1093/BIB/BBX004},
  timestamp    = {Thu, 28 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WangCZ18.bib},
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}
@article{DBLP:journals/bib/WangFWKSL18,
  author       = {Huilin Wang and
                  Liubin Feng and
                  Geoffrey I. Webb and
                  Lukasz A. Kurgan and
                  Jiangning Song and
                  Donghai Lin},
  title        = {Critical evaluation of bioinformatics tools for the prediction of
                  protein crystallization propensity},
  journal      = {Briefings Bioinform.},
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  number       = {5},
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  year         = {2018},
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  doi          = {10.1093/BIB/BBX018},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WangFWKSL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WeirickMPJDDU18,
  author       = {Tyler Weirick and
                  Giuseppe Militello and
                  Yuliya Ponomareva and
                  David John and
                  Claudia D{\"{o}}ring and
                  Stefanie Dimmeler and
                  Shizuka Uchida},
  title        = {Logic programming to infer complex {RNA} expression patterns from
                  RNA-seq data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {199--209},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw117},
  doi          = {10.1093/BIB/BBW117},
  timestamp    = {Wed, 18 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WeirickMPJDDU18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WenZNHZFWDZW18,
  author       = {Yang{-}Jun Wen and
                  Hanwen Zhang and
                  Yuan{-}Li Ni and
                  Bo Huang and
                  Jin Zhang and
                  Jian{-}Ying Feng and
                  Shi{-}Bo Wang and
                  Jim M. Dunwell and
                  Yuan{-}Ming Zhang and
                  Rongling Wu},
  title        = {Methodological implementation of mixed linear models in multi-locus
                  genome-wide association studies},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {700--712},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw145},
  doi          = {10.1093/BIB/BBW145},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WenZNHZFWDZW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WengHWHCL18,
  author       = {Shun{-}Long Weng and
                  Kai{-}Yao Huang and
                  Julia Tzu{-}Ya Weng and
                  Fang{-}Yu Hung and
                  Tzu{-}Hao Chang and
                  Tzong{-}Yi Lee},
  title        = {Genome-wide discovery of viral microRNAs based on phylogenetic analysis
                  and structural evolution of various human papillomavirus subtypes},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1102--1114},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx046},
  doi          = {10.1093/BIB/BBX046},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WengHWHCL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WuZWCZCCGZF18,
  author       = {Wenwu Wu and
                  Jie Zong and
                  Ning Wei and
                  Jian Cheng and
                  Xuexia Zhou and
                  Yuanming Cheng and
                  Dai Chen and
                  Qinghua Guo and
                  Bo Zhang and
                  Ying Feng},
  title        = {{CASH:} a constructing comprehensive splice site method for detecting
                  alternative splicing events},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {905--917},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx034},
  doi          = {10.1093/BIB/BBX034},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WuZWCZCCGZF18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WuZWTW18,
  author       = {Xiaolin Wu and
                  Qinbin Zhang and
                  Zhaokun Wu and
                  Fuju Tai and
                  Wei Wang},
  title        = {Subcellular locations of potential cell wall proteins in plants: predictors,
                  databases and cross-referencing},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1130--1140},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx050},
  doi          = {10.1093/BIB/BBX050},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WuZWTW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WuyunZPY18,
  author       = {Qiqige Wuyun and
                  Wei Zheng and
                  Zhenling Peng and
                  Jianyi Yang},
  title        = {A large-scale comparative assessment of methods for residue-residue
                  contact prediction},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {2},
  pages        = {219--230},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw106},
  doi          = {10.1093/BIB/BBW106},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WuyunZPY18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/XuC18,
  author       = {Maoqi Xu and
                  Liang Chen},
  title        = {An empirical likelihood ratio test robust to individual heterogeneity
                  for differential expression analysis of RNA-seq},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {109--117},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw103},
  doi          = {10.1093/BIB/BBW103},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/XuC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/XuWLCZJZLLL18,
  author       = {Juan Xu and
                  Zishan Wang and
                  Shengli Li and
                  Juan Chen and
                  Jinwen Zhang and
                  Chunjie Jiang and
                  Zheng Zhao and
                  Jing Li and
                  Yongsheng Li and
                  Xia Li},
  title        = {Combinatorial epigenetic regulation of non-coding RNAs has profound
                  effects on oncogenic pathways in breast cancer subtypes},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {52--64},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw099},
  doi          = {10.1093/BIB/BBW099},
  timestamp    = {Tue, 18 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/XuWLCZJZLLL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YanCGHZGHLLGQG18,
  author       = {Haidan Yan and
                  Hao Cai and
                  Qingzhou Guan and
                  Jun He and
                  Juan Zhang and
                  You Guo and
                  Haiyan Huang and
                  Xiangyu Li and
                  Yawei Li and
                  Yunyan Gu and
                  Lishuang Qi and
                  Zheng Guo},
  title        = {Individualized analysis of differentially expressed miRNAs with application
                  to the identification of miRNAs deregulated commonly in lung cancer
                  tissues},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {793--802},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx015},
  doi          = {10.1093/BIB/BBX015},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/YanCGHZGHLLGQG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YanCZZYZGXWL18,
  author       = {Jifang Yan and
                  Guohui Chuai and
                  Chi Zhou and
                  Chen{-}Yu Zhu and
                  Jing Yang and
                  Chao Zhang and
                  Feng Gu and
                  Han Xu and
                  Jia Wei and
                  Qi Liu},
  title        = {Benchmarking {CRISPR} on-target sgRNA design},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {4},
  pages        = {721--724},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx001},
  doi          = {10.1093/BIB/BBX001},
  timestamp    = {Wed, 18 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/YanCZZYZGXWL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YanR0S18,
  author       = {Jingwen Yan and
                  Shannon L. Risacher and
                  Li Shen and
                  Andrew J. Saykin},
  title        = {Network approaches to systems biology analysis of complex disease:
                  integrative methods for multi-omics data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1370--1381},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx066},
  doi          = {10.1093/BIB/BBX066},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/YanR0S18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangGWHHPZ18,
  author       = {Yuedong Yang and
                  Jianzhao Gao and
                  Jihua Wang and
                  Rhys Heffernan and
                  Jack Hanson and
                  Kuldip K. Paliwal and
                  Yaoqi Zhou},
  title        = {Sixty-five years of the long march in protein secondary structure
                  prediction: the final stretch?},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {482--494},
  year         = {2018},
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  doi          = {10.1093/BIB/BBW129},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/YangGWHHPZ18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YuTSMXFWM18,
  author       = {Dongliang Yu and
                  Zhonghai Tang and
                  Chaogang Shao and
                  Xiaoxia Ma and
                  Taihe Xiang and
                  Zhihong Fan and
                  Huizhong Wang and
                  Yijun Meng},
  title        = {Investigating microRNA-mediated regulation of the nascent nuclear
                  transcripts in plants: a bioinformatics workflow},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1317--1324},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx069},
  doi          = {10.1093/BIB/BBX069},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/YuTSMXFWM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangBS18,
  author       = {Yun Zhang and
                  Saurabh Baheti and
                  Zhifu Sun},
  title        = {Statistical method evaluation for differentially methylated CpGs in
                  base resolution next-generation {DNA} sequencing data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {374--386},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw133},
  doi          = {10.1093/BIB/BBW133},
  timestamp    = {Wed, 26 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangBS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangGB18,
  author       = {Ping Zhang and
                  Constantinos A. Georgiou and
                  Vladimir Brusic},
  title        = {Elemental metabolomics},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {524--536},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw131},
  doi          = {10.1093/BIB/BBW131},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangGB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangK18,
  author       = {Jian Zhang and
                  Lukasz A. Kurgan},
  title        = {Review and comparative assessment of sequence-based predictors of
                  protein-binding residues},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {821--837},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx022},
  doi          = {10.1093/BIB/BBX022},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangK18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangLLLG18,
  author       = {Qiong Zhang and
                  Wei Liu and
                  Chun{-}Jie Liu and
                  Sheng{-}Yan Lin and
                  An{-}Yuan Guo},
  title        = {SEGtool: a specifically expressed gene detection tool and applications
                  in human tissue and single-cell sequencing data},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1325--1336},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx074},
  doi          = {10.1093/BIB/BBX074},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangLLLG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangSC18,
  author       = {Hanyuan Zhang and
                  Bruno Vieira Resende e Silva and
                  Juan Cui},
  title        = {miRDis: a Web tool for endogenous and exogenous microRNA discovery
                  based on deep-sequencing data analysis},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {415--424},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw140},
  doi          = {10.1093/BIB/BBW140},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangSC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangTL18,
  author       = {Yuwei Zhang and
                  Yang Tao and
                  Qi Liao},
  title        = {Long noncoding {RNA:} a crosslink in biological regulatory network},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {930--945},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx042},
  doi          = {10.1093/BIB/BBX042},
  timestamp    = {Thu, 02 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangTL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangWSY18,
  author       = {Han Zhang and
                  William Wheeler and
                  Lei Song and
                  Kai Yu},
  title        = {Proper joint analysis of summary association statistics requires the
                  adjustment of heterogeneity in {SNP} coverage pattern},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {6},
  pages        = {1337--1343},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx072},
  doi          = {10.1093/BIB/BBX072},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangWSY18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoLXWCLLLJ18,
  author       = {Linna Zhao and
                  Di Liu and
                  Jing Xu and
                  Zhaoyang Wang and
                  Yang Chen and
                  Changgui Lei and
                  Ying Li and
                  Guiyou Liu and
                  Yongshuai Jiang},
  title        = {The framework for population epigenetic study},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {89--100},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw098},
  doi          = {10.1093/BIB/BBW098},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhaoLXWCLLLJ18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoWSSSG18,
  author       = {Shilin Zhao and
                  Jing Wang and
                  David C. Samuels and
                  Quanghu Sheng and
                  Yu Shyr and
                  Yan Guo},
  title        = {Strategies for processing and quality control of Illumina genotyping
                  arrays},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {5},
  pages        = {765--775},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbx012},
  doi          = {10.1093/BIB/BBX012},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ZhaoWSSSG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhengHDLXSG18,
  author       = {Yongchang Zheng and
                  Qianqian Huang and
                  Zijian Ding and
                  Tingting Liu and
                  Chenghai Xue and
                  Xinting Sang and
                  Jin Gu},
  title        = {Genome-wide {DNA} methylation analysis identifies candidate epigenetic
                  markers and drivers of hepatocellular carcinoma},
  journal      = {Briefings Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {101--108},
  year         = {2018},
  url          = {https://doi.org/10.1093/bib/bbw094},
  doi          = {10.1093/BIB/BBW094},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/ZhengHDLXSG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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