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@article{DBLP:journals/bmcbi/AbouelhodaKO08, author = {Mohamed Ibrahim Abouelhoda and Stefan Kurtz and Enno Ohlebusch}, title = {CoCoNUT: an efficient system for the comparison and analysis of genomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-476}, doi = {10.1186/1471-2105-9-476}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AbouelhodaKO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AllmerKH08, author = {Jens Allmer and Sebastian Kuhlgert and Michael Hippler}, title = {2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-302}, doi = {10.1186/1471-2105-9-302}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AllmerKH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AmigoSPC08, author = {Jorge Amigo and Antonio Salas and Christopher Phillips and {\'{A}}ngel Carracedo}, title = {SPSmart: adapting population based {SNP} genotype databases for fast and comprehensive web access}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-428}, doi = {10.1186/1471-2105-9-428}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AmigoSPC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AndronescuBHC08, author = {Mirela Andronescu and Vera Bereg and Holger H. Hoos and Anne Condon}, title = {{RNA} {STRAND:} The {RNA} Secondary Structure and Statistical Analysis Database}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-340}, doi = {10.1186/1471-2105-9-340}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AndronescuBHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AngaricaPVCC08, author = {Vladimir Espinosa Angarica and Abel Gonz{\'{a}}lez P{\'{e}}rez and Ana Tereza Ribeiro de Vasconcelos and Julio Collado{-}Vides and Bruno Contreras{-}Moreira}, title = {Prediction of {TF} target sites based on atomistic models of protein-DNA complexes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-436}, doi = {10.1186/1471-2105-9-436}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AngaricaPVCC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AngeliniCCMP08, author = {Claudia Angelini and Luisa Cutillo and Daniela De Canditiis and Margherita Mutarelli and Marianna Pensky}, title = {{BATS:} a Bayesian user-friendly software for Analyzing Time Series microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-415}, doi = {10.1186/1471-2105-9-415}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AngeliniCCMP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AnsariSGM08, author = {Mohd. Zeeshan Ansari and Jyoti Sharma and Rajesh S. Gokhale and Debasisa Mohanty}, title = {\emph{In silico }analysis of methyltransferase domains involved in biosynthesis of secondary metabolites}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-454}, doi = {10.1186/1471-2105-9-454}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AnsariSGM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AntaoLLBL08, author = {Tiago Antao and Ana Lopes and Ricardo J. Lopes and Albano Beja{-}Pereira and Gordon Luikart}, title = {{LOSITAN:} {A} workbench to detect molecular adaptation based on a \emph{F}\({}_{\mbox{\emph{st}}}\)-outlier method}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-323}, doi = {10.1186/1471-2105-9-323}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AntaoLLBL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AnwarBJHSKW08, author = {Firoz Anwar and Syed Murtuza Baker and Taskeed Jabid and Md. Mehedi Hasan and Mohammad Shoyaib and Haseena Khan and Ray Walshe}, title = {Pol {II} promoter prediction using characteristic 4-mer motifs: a machine learning approach}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-414}, doi = {10.1186/1471-2105-9-414}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AnwarBJHSKW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AraguesSO08, author = {Ramon Aragues and Chris Sander and Baldo Oliva}, title = {Predicting cancer involvement of genes from heterogeneous data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-172}, doi = {10.1186/1471-2105-9-172}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AraguesSO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ArmstrongJZ08, author = {Don L. Armstrong and Chaim O. Jacob and Raphael Zidovetzki}, title = {Function2Gene: {A} gene selection tool to increase the power of genetic association studies by utilizing public databases and expert knowledge}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-311}, doi = {10.1186/1471-2105-9-311}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ArmstrongJZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ArmutluOYKT08, author = {Pelin Armutlu and Muhittin Emre {\"{O}}zdemir and Fadime {\"{U}}ney Y{\"{u}}ksektepe and I. Halil Kavakli and Metin T{\"{u}}rkay}, title = {Classification of drug molecules considering their IC\({}_{\mbox{50 }}\)values using mixed-integer linear programming based hyper-boxes method}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-411}, doi = {10.1186/1471-2105-9-411}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ArmutluOYKT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ArtziKS08, author = {Shay Artzi and Adam Kiezun and Noam Shomron}, title = {miRNAminer: {A} tool for homologous microRNA gene search}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-39}, doi = {10.1186/1471-2105-9-39}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ArtziKS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ArvidssonKRM08, author = {Samuel Arvidsson and Miroslaw Kwasniewski and Diego Mauricio Ria{\~{n}}o{-}Pach{\'{o}}n and Bernd Mueller{-}Roeber}, title = {QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative {PCR}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-465}, doi = {10.1186/1471-2105-9-465}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ArvidssonKRM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AstrandMR08, author = {Magnus {\AA}strand and Petter Mostad and Mats Rudemo}, title = {Empirical Bayes models for multiple probe type microarrays at the probe level}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-156}, doi = {10.1186/1471-2105-9-156}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AstrandMR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AuliacFGd08, author = {C{\'{e}}dric Auliac and Vincent Frouin and Xavier Gidrol and Florence d'Alch{\'{e}}{-}Buc}, title = {Evolutionary approaches for the reverse-engineering of gene regulatory networks: {A} study on a biologically realistic dataset}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-91}, doi = {10.1186/1471-2105-9-91}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AuliacFGd08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AylingB08, author = {Sarah C. Ayling and Terence A. Brown}, title = {Novel methodology for construction and pruning of quasi-median networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-115}, doi = {10.1186/1471-2105-9-115}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AylingB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BaderAO08, author = {Martin Bader and Mohamed Ibrahim Abouelhoda and Enno Ohlebusch}, title = {A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-516}, doi = {10.1186/1471-2105-9-516}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BaderAO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Barbosa-SilvaSSO08, author = {Adriano Barbosa{-}Silva and Venkata P. Satagopam and Reinhard Schneider and Jos{\'{e}} Miguel Ortega}, title = {Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-141}, doi = {10.1186/1471-2105-9-141}, timestamp = {Wed, 14 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Barbosa-SilvaSSO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BartonACHHKMSSTTADGSB08, author = {Geraint Barton and J. C. Abbott and Norie Chiba and D. W. Huang and Y. Huang and Marko Krznaric and J. Mack{-}Smith and A. Saleem and B. T. Sherman and Brijesh Tiwari and Christopher D. Tomlinson and Timothy J. Aitman and John Darlington and Laurence Game and Michael J. E. Sternberg and Sarah A. Butcher}, title = {{EMAAS:} An extensible grid-based Rich Internet Application for microarray data analysis and management}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-493}, doi = {10.1186/1471-2105-9-493}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BartonACHHKMSSTTADGSB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BastienM08, author = {Olivier Bastien and Eric Mar{\'{e}}chal}, title = {Evolution of biological sequences implies an extreme value distribution of type {I} for both global and local pairwise alignment scores}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-332}, doi = {10.1186/1471-2105-9-332}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BastienM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BatschNFULLPLSG08, author = {Anke Batsch and Andrea Noetel and Christian Fork and Anita Urban and Daliborka Lazic and Tina Lucas and Julia Pietsch and Andreas Lazar and Edgar Sch{\"{o}}mig and Dirk Gr{\"{u}}ndemann}, title = {Simultaneous fitting of real-time {PCR} data with efficiency of amplification modeled as Gaussian function of target fluorescence}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-95}, doi = {10.1186/1471-2105-9-95}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BatschNFULLPLSG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BatyJPSB08, author = {Florent Baty and Daniel Jaeger and Frank Preiswerk and Martin M. Schumacher and Martin H. Brutsche}, title = {Stability of gene contributions and identification of outliers in multivariate analysis of microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-289}, doi = {10.1186/1471-2105-9-289}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BatyJPSB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BauerB08, author = {Denis C. Bauer and Timothy L. Bailey}, title = {Studying the functional conservation of cis-regulatory modules and their transcriptional output}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-220}, doi = {10.1186/1471-2105-9-220}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BauerB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BauerSS08, author = {Mark Bauer and Sheldon M. Schuster and Khalid Sayood}, title = {The Average Mutual Information Profile as a Genomic Signature}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-48}, doi = {10.1186/1471-2105-9-48}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BauerSS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BekaertIAB08, author = {Micha{\"{e}}l Bekaert and Ivaylo P. Ivanov and John F. Atkins and Pavel V. Baranov}, title = {Ornithine decarboxylase antizyme finder {(OAF):} Fast and reliable detection of antizymes with frameshifts in mRNAs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-178}, doi = {10.1186/1471-2105-9-178}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BekaertIAB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BernardesFV08, author = {Juliana S. Bernardes and Jorge H. Fernandez and Ana Tereza Ribeiro de Vasconcelos}, title = {Structural descriptor database: a new tool for sequence-based functional site prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-492}, doi = {10.1186/1471-2105-9-492}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BernardesFV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BernhartHWGS08, author = {Stephan H. Bernhart and Ivo L. Hofacker and Sebastian Will and Andreas R. Gruber and Peter F. Stadler}, title = {RNAalifold: improved consensus structure prediction for {RNA} alignments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-474}, doi = {10.1186/1471-2105-9-474}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BernhartHWGS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BethardLMH08, author = {Steven Bethard and Zhiyong Lu and James H. Martin and Lawrence Hunter}, title = {Semantic role labeling for protein transport predicates}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-277}, doi = {10.1186/1471-2105-9-277}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BethardLMH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BettencourtSFCPPSMSBB08, author = {Bruno F. Bettencourt and Margarida R. Santos and Raquel N. Fialho and Ana R. Couto and Maria J. Peixoto and Jo{\~{a}}o P. Pinheiro and H{\'{e}}lder Sp{\'{\i}}nola and Marian G. Mora and Cristina Santos and Ant{\'{o}}nio Brehm and J{\'{a}}come Bruges{-}Armas}, title = {Evaluation of two methods for computational {HLA} haplotypes inference using a real dataset}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-68}, doi = {10.1186/1471-2105-9-68}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BettencourtSFCPPSMSBB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BhattacharyaLLGWSF08, author = {Arnab Bhattacharya and Sasha Levy and Adria LeBoeuf and Michelle Gaylord and Leslie Wilson and Ambuj K. Singh and Stuart C. Feinstein}, title = {A general modeling and visualization tool for comparing different members of a group: application to studying tau-mediated regulation of microtubule dynamics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-339}, doi = {10.1186/1471-2105-9-339}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BhattacharyaLLGWSF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BinderS08, author = {Harald Binder and Martin Schumacher}, title = {Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-14}, doi = {10.1186/1471-2105-9-14}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BinderS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BiswasSA08, author = {Shameek Biswas and John D. Storey and Joshua M. Akey}, title = {Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-244}, doi = {10.1186/1471-2105-9-244}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BiswasSA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BittonOCM08, author = {Danny A. Bitton and Michal J. Okoniewski and Yvonne Connolly and Crispin J. Miller}, title = {Exon level integration of proteomics and microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-118}, doi = {10.1186/1471-2105-9-118}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BittonOCM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BlangiardoR08, author = {Marta Blangiardo and Sylvia Richardson}, title = {A Bayesian calibration model for combining different pre-processing methods in Affymetrix chips}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-512}, doi = {10.1186/1471-2105-9-512}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BlangiardoR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BleakleyLB08, author = {Kevin Bleakley and Marie{-}Paule Lefranc and G{\'{e}}rard Biau}, title = {Recovering probabilities for nucleotide trimming processes for {T} cell receptor {TRA} and {TRG} {V-J} junctions analyzed with {IMGT} tools}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-408}, doi = {10.1186/1471-2105-9-408}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BleakleyLB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BlomHHSRK08, author = {Evert{-}Jan Blom and Sacha A. F. T. van Hijum and Klaas J. Hofstede and Remko Silvis and Jos B. T. M. Roerdink and Oscar P. Kuipers}, title = {{DISCLOSE} : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-535}, doi = {10.1186/1471-2105-9-535}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BlomHHSRK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BogojeskaLR08, author = {Jasmina Bogojeska and Thomas Lengauer and J{\"{o}}rg Rahnenf{\"{u}}hrer}, title = {Stability analysis of mixtures of mutagenetic trees}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-165}, doi = {10.1186/1471-2105-9-165}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BogojeskaLR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BohnebeckLKG08, author = {Uta Bohnebeck and Thierry Lombardot and Renzo Kottmann and Frank Oliver Gl{\"{o}}ckner}, title = {MetaMine - {A} tool to detect and analyse gene patterns in their environmental context}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-459}, doi = {10.1186/1471-2105-9-459}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BohnebeckLKG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BordnerG08, author = {Andrew J. Bordner and Andrey A. Gorin}, title = {Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-234}, doi = {10.1186/1471-2105-9-234}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BordnerG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BorozanCPHEKZM08, author = {Ivan Borozan and Limin Chen and Bryan Paeper and Jenny E. Heathcote and Aled M. Edwards and Michael A. Katze and Zhaolei Zhang and Ian D. McGilvray}, title = {{MAID} : An effect size based model for microarray data integration across laboratories and platforms}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-305}, doi = {10.1186/1471-2105-9-305}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BorozanCPHEKZM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BougouffaW08, author = {Salim Bougouffa and Jim Warwicker}, title = {Volume-based solvation models out-perform area-based models in combined studies of wild-type and mutated protein-protein interfaces}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-448}, doi = {10.1186/1471-2105-9-448}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BougouffaW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BoyleCKS08, author = {John Boyle and Christopher C. Cavnor and Sarah A. Killcoyne and Ilya Shmulevich}, title = {Systems biology driven software design for the research enterprise}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-295}, doi = {10.1186/1471-2105-9-295}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BoyleCKS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BraistedKVMRWHFSFPP08, author = {John C. Braisted and Srilatha Kuntumalla and Christine Vogel and Edward M. Marcotte and Alan R. Rodrigues and Rong Wang and Shih{-}Ting Huang and Erik S. Ferlanti and Alexander I. Saeed and Robert D. Fleischmann and Scott N. Peterson and Rembert Pieper}, title = {The {APEX} Quantitative Proteomics Tool: Generating protein quantitation estimates from {LC-MS/MS} proteomics results}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-529}, doi = {10.1186/1471-2105-9-529}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BraistedKVMRWHFSFPP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BraunCP08, author = {Rosemary Braun and Leslie Cope and Giovanni Parmigiani}, title = {Identifying differential correlation in gene/pathway combinations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-488}, doi = {10.1186/1471-2105-9-488}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BraunCP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BraunsteinMP08, author = {Alfredo Braunstein and Roberto Mulet and Andrea Pagnani}, title = {Estimating the size of the solution space of metabolic networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-240}, doi = {10.1186/1471-2105-9-240}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BraunsteinMP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BrehelinDG08, author = {Laurent Br{\'{e}}h{\'{e}}lin and Jean{-}Fran{\c{c}}ois Dufayard and Olivier Gascuel}, title = {PlasmoDraft: a database of \emph{Plasmodium falciparum }gene function predictions based on postgenomic data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-440}, doi = {10.1186/1471-2105-9-440}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BrehelinDG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BrickP08, author = {Kevin Brick and Elisabetta Pizzi}, title = {A novel series of compositionally biased substitution matrices for comparing \emph{Plasmodium }proteins}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-236}, doi = {10.1186/1471-2105-9-236}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BrickP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BrilliMFBLF08, author = {Matteo Brilli and Alessio Mengoni and Marco Fondi and Marco Bazzicalupo and Pietro Li{\`{o}} and Renato Fani}, title = {Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-551}, doi = {10.1186/1471-2105-9-551}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BrilliMFBLF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BrockSBLT08, author = {Guy N. Brock and John R. Shaffer and Richard E. Blakesley and Meredith J. Lotz and George C. Tseng}, title = {Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-12}, doi = {10.1186/1471-2105-9-12}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BrockSBLT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Browning08, author = {Brian L. Browning}, title = {{PRESTO:} Rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-309}, doi = {10.1186/1471-2105-9-309}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Browning08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BrusniakBCCEGLLMSVZAW08, author = {Mi{-}Youn K. Brusniak and Bernd Bodenmiller and David S. Campbell and Kelly Cooke and James Eddes and Andrew Garbutt and Hollis Lau and Simon Letarte and Lukas N. Mueller and Vagisha Sharma and Olga Vitek and Ning Zhang and Ruedi Aebersold and Julian D. Watts}, title = {Corra: Computational framework and tools for {LC-MS} discovery and targeted mass spectrometry-based proteomics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-542}, doi = {10.1186/1471-2105-9-542}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BrusniakBCCEGLLMSVZAW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BryanBC08, author = {Kenneth Bryan and Lorraine Brennan and Padraig Cunningham}, title = {MetaFIND: {A} feature analysis tool for metabolomics data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-470}, doi = {10.1186/1471-2105-9-470}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BryanBC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BundschusDSTK08, author = {Markus Bundschus and Math{\"{a}}us Dejori and Martin Stetter and Volker Tresp and Hans{-}Peter Kriegel}, title = {Extraction of semantic biomedical relations from text using conditional random fields}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-207}, doi = {10.1186/1471-2105-9-207}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BundschusDSTK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BuschLABS08, author = {Marcel Schmidt am Busch and Anne Lopes and Najette Amara and Christine Bathelt and Thomas Simonson}, title = {Testing the Coulomb/Accessible Surface Area solvent model for protein stability, ligand binding, and protein design}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-148}, doi = {10.1186/1471-2105-9-148}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BuschLABS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BushEDMR08, author = {William S. Bush and Todd L. Edwards and Scott M. Dudek and Brett A. McKinney and Marylyn D. Ritchie}, title = {Alternative contingency table measures improve the power and detection of multifactor dimensionality reduction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-238}, doi = {10.1186/1471-2105-9-238}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BushEDMR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BylesjoRNHT08, author = {Max Bylesj{\"{o}} and Mattias Rantalainen and Jeremy K. Nicholson and Elaine Holmes and Johan Trygg}, title = {{K-OPLS} package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-106}, doi = {10.1186/1471-2105-9-106}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BylesjoRNHT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BystroffW08, author = {Christopher Bystroff and Bobbie{-}Jo M. Webb{-}Robertson}, title = {Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-429}, doi = {10.1186/1471-2105-9-429}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BystroffW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CaffreyLM08, author = {Daniel R. Caffrey and Elizabeth A. Lunney and Deborah J. Moshinsky}, title = {Prediction of specificity-determining residues for small-molecule kinase inhibitors}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-491}, doi = {10.1186/1471-2105-9-491}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CaffreyLM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CairnsPSTBSB08, author = {David A. Cairns and David N. Perkins and Anthea J. Stanley and Douglas Thompson and Jennifer H. Barrett and Peter J. Selby and Rosamonde E. Banks}, title = {Integrated multi-level quality control for proteomic profiling studies using mass spectrometry}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-519}, doi = {10.1186/1471-2105-9-519}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CairnsPSTBSB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CakmakO08, author = {Ali Cakmak and Gultekin {\"{O}}zsoyoglu}, title = {Discovering gene annotations in biomedical text databases}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-143}, doi = {10.1186/1471-2105-9-143}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CakmakO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CalzaVP08, author = {Stefano Calza and Davide Valentini and Yudi Pawitan}, title = {Normalization of oligonucleotide arrays based on the least-variant set of genes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-140}, doi = {10.1186/1471-2105-9-140}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CalzaVP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Campagne08, author = {Fabien Campagne}, title = {Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-132}, doi = {10.1186/1471-2105-9-132}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Campagne08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CardonaRV08, author = {Gabriel Cardona and Francesc Rossell{\'{o}} and Gabriel Valiente}, title = {A perl package and an alignment tool for phylogenetic networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-175}, doi = {10.1186/1471-2105-9-175}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CardonaRV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CardonaRV08a, author = {Gabriel Cardona and Francesc Rossell{\'{o}} and Gabriel Valiente}, title = {Extended Newick: it is time for a standard representation of phylogenetic networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-532}, doi = {10.1186/1471-2105-9-532}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CardonaRV08a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CarterMP08, author = {Kim W. Carter and Pamela A. McCaskie and Lyle J. Palmer}, title = {SimHap {GUI:} An intuitive graphical user interface for genetic association analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-557}, doi = {10.1186/1471-2105-9-557}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CarterMP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Carvajal-Rodriguez08, author = {Antonio Carvajal{-}Rodr{\'{\i}}guez}, title = {{GENOMEPOP:} {A} program to simulate genomes in populations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-223}, doi = {10.1186/1471-2105-9-223}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Carvajal-Rodriguez08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CarvalhoFCYB08, author = {Paulo C. Carvalho and Juliana S. G. Fischer and Emily I. Chen and John R. Yates III and Valmir Carneiro Barbosa}, title = {PatternLab for proteomics: a tool for differential shotgun proteomics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-316}, doi = {10.1186/1471-2105-9-316}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CarvalhoFCYB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CasimiroVFO08, author = {Ana C. Casimiro and Susana Vinga and Ana T. Freitas and Arlindo L. Oliveira}, title = {An analysis of the positional distribution of {DNA} motifs in promoter regions and its biological relevance}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-89}, doi = {10.1186/1471-2105-9-89}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CasimiroVFO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Chadeau-HyamHOWIB08, author = {Marc Chadeau{-}Hyam and Clive J. Hoggart and Paul F. O'Reilly and John C. Whittaker and Maria De Iorio and David J. Balding}, title = {Fregene: Simulation of realistic sequence-level data in populations and ascertained samples}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-364}, doi = {10.1186/1471-2105-9-364}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Chadeau-HyamHOWIB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChagoyenCP08, author = {Monica Chagoyen and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Assessment of protein set coherence using functional annotations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-444}, doi = {10.1186/1471-2105-9-444}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChagoyenCP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChaivorapolMWYRBL08, author = {Christina Chaivorapol and Collin Melton and Grace Wei and Ru{-}Fang Yeh and Miguel Ramalho{-}Santos and Robert Blelloch and Hao Li}, title = {CompMoby: Comparative MobyDick for detection of cis-regulatory motifs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-455}, doi = {10.1186/1471-2105-9-455}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChaivorapolMWYRBL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChalmelP08, author = {Fr{\'{e}}d{\'{e}}ric Chalmel and Michael Primig}, title = {The Annotation, Mapping, Expression and Network {(AMEN)} suite of tools for molecular systems biology}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-86}, doi = {10.1186/1471-2105-9-86}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChalmelP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChanHHT08, author = {Chon{-}Kit Kenneth Chan and Arthur L. Hsu and Saman K. Halgamuge and Sen{-}Lin Tang}, title = {Binning sequences using very sparse labels within a metagenome}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-215}, doi = {10.1186/1471-2105-9-215}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChanHHT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChangLJYLHW08, author = {Ting{-}Yu Chang and Yin{-}Yi Li and Chih{-}Hung Jen and Tsun{-}Po Yang and Chi{-}Hung Lin and Ming{-}Ta Hsu and Hsei{-}Wei Wang}, title = {easyExon - {A} Java-based {GUI} tool for processing and visualization of Affymetrix exon array data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-432}, doi = {10.1186/1471-2105-9-432}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChangLJYLHW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChariCWBWVMNL08, author = {Raj Chari and Bradley P. Coe and Craig Wedseltoft and Marie Benetti and Ian M. Wilson and Emily A. Vucic and Calum MacAulay and Raymond T. Ng and Wan L. Lam}, title = {SIGMA\({}^{\mbox{2}}\): {A} system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-422}, doi = {10.1186/1471-2105-9-422}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChariCWBWVMNL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenLAD08, author = {Guanrao Chen and Peter E. Larsen and Eyad Almasri and Yang Dai}, title = {Rank-based edge reconstruction for scale-free genetic regulatory networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-75}, doi = {10.1186/1471-2105-9-75}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenLAD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenMTVB08, author = {Rong Chen and Rohan Mallelwar and Ajit Thosar and Shivkumar Venkatasubrahmanyam and Atul J. Butte}, title = {GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-548}, doi = {10.1186/1471-2105-9-548}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenMTVB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenTSZ08, author = {Yong{-}Zi Chen and Yu{-}Rong Tang and Zhi{-}Ya Sheng and Ziding Zhang}, title = {Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of \emph{k}-spaced amino acid pairs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-101}, doi = {10.1186/1471-2105-9-101}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenTSZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChenXWSWZHC08, author = {Li Chen and Jianhua Xuan and Chen Wang and Ie{-}Ming Shih and Yue Joseph Wang and Zhen Zhang and Eric P. Hoffman and Robert Clarke}, title = {Knowledge-guided multi-scale independent component analysis for biomarker identification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-416}, doi = {10.1186/1471-2105-9-416}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChenXWSWZHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChengBF08, author = {Tammy M. K. Cheng and Tom L. Blundell and Juan Fern{\'{a}}ndez{-}Recio}, title = {Structural assembly of two-domain proteins by rigid-body docking}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-441}, doi = {10.1186/1471-2105-9-441}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChengBF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChengLSL08, author = {Kin{-}On Cheng and Ngai{-}Fong Law and Wan{-}Chi Siu and Alan Wee{-}Chung Liew}, title = {Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-210}, doi = {10.1186/1471-2105-9-210}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChengLSL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChiapelloGCBPK08, author = {H{\'{e}}l{\`{e}}ne Chiapello and Annie Gendrault and Christophe Caron and J{\'{e}}rome Blum and Marie{-}Agn{\`{e}}s Petit and Meriem El Karoui}, title = {{MOSAIC:} an online database dedicated to the comparative genomics of bacterial strains at the intra-species level}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-498}, doi = {10.1186/1471-2105-9-498}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChiapelloGCBPK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChicaLGLG08, author = {Claudia Chica and Alberto Labarga and Cathryn M. Gould and Rodrigo Lopez and Toby J. Gibson}, title = {A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-229}, doi = {10.1186/1471-2105-9-229}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChicaLGLG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChidCNML08, author = {Bryan Chi and Ronald J. deLeeuw and Bradley P. Coe and Raymond T. Ng and Calum MacAulay and Wan L. Lam}, title = {MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-243}, doi = {10.1186/1471-2105-9-243}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChidCNML08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChoSRZ08, author = {Young{-}Rae Cho and Lei Shi and Murali Ramanathan and Aidong Zhang}, title = {A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-382}, doi = {10.1186/1471-2105-9-382}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChoSRZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChoiK08, author = {Kwangmin Choi and Sun Kim}, title = {ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-145}, doi = {10.1186/1471-2105-9-145}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChoiK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChoiYLL08, author = {Junwon Choi and Kyung{-}won Yang and Tai{-}yong Lee and Sang Yup Lee}, title = {New time-scale criteria for model simplification of bio-reaction systems}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-338}, doi = {10.1186/1471-2105-9-338}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChoiYLL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChopraKYCKL08, author = {Pankaj Chopra and Jaewoo Kang and Jiong Yang and HyungJun Cho and Heenam Stanley Kim and Min{-}Goo Lee}, title = {Microarray data mining using landmark gene-guided clustering}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-92}, doi = {10.1186/1471-2105-9-92}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChopraKYCKL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChristleyLM08, author = {Scott Christley and Neil F. Lobo and Gregory R. Madey}, title = {Multiple organism algorithm for finding ultraconserved elements}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-15}, doi = {10.1186/1471-2105-9-15}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChristleyLM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChurbanovW08, author = {Alexander G. Churbanov and Stephen Winters{-}Hilt}, title = {Implementing {EM} and Viterbi algorithms for Hidden Markov Model in linear memory}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-224}, doi = {10.1186/1471-2105-9-224}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChurbanovW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChurkinB08, author = {Alexander Churkin and Danny Barash}, title = {An efficient method for the prediction of deleterious multiple-point mutations in the secondary structure of RNAs using suboptimal folding solutions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-222}, doi = {10.1186/1471-2105-9-222}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChurkinB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CoghlanFMFHBCS08, author = {Avril Coghlan and Tristan J. Fiedler and Sheldon J. McKay and Paul Flicek and Todd W. Harris and Darin Blasiar and Lincoln D. Stein}, title = {nGASP - the nematode genome annotation assessment project}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-549}, doi = {10.1186/1471-2105-9-549}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CoghlanFMFHBCS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CoranderMST08, author = {Jukka Corander and Pekka Marttinen and Jukka Sir{\'{e}}n and Jing Tang}, title = {Enhanced Bayesian modelling in {BAPS} software for learning genetic structures of populations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-539}, doi = {10.1186/1471-2105-9-539}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CoranderMST08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CorradiFPST08, author = {Luca Corradi and Marco Fato and Ivan Porro and Silvia Scaglione and Livia Torterolo}, title = {A Web-based and Grid-enabled dChip version for the analysis of large sets of gene expression data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-480}, doi = {10.1186/1471-2105-9-480}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CorradiFPST08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CriscuoloG08, author = {Alexis Criscuolo and Olivier Gascuel}, title = {Fast NJ-like algorithms to deal with incomplete distance matrices}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-166}, doi = {10.1186/1471-2105-9-166}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/CriscuoloG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DaiTGZHYVBP08, author = {Wei Dai and Jens M. Teodoridis and Janet Graham and Constanze Zeller and Tim Hui{-}Ming Huang and Pearlly Yan and J. Keith Vass and Robert Brown and Jim Paul}, title = {Methylation Linear Discriminant Analysis {(MLDA)} for identifying differentially methylated CpG islands}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-337}, doi = {10.1186/1471-2105-9-337}, timestamp = {Tue, 30 Mar 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DaiTGZHYVBP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DaiW08, author = {Qi Dai and Tian{-}Ming Wang}, title = {Comparison study on k-word statistical measures for protein: From sequence to 'sequence space'}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-394}, doi = {10.1186/1471-2105-9-394}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DaiW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DaigleA08, author = {Bernie J. Daigle Jr. and Russ B. Altman}, title = {{M-BISON:} Microarray-based integration of data sources using networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-214}, doi = {10.1186/1471-2105-9-214}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DaigleA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DandassBLB08, author = {Yoginder S. Dandass and Shane C. Burgess and Mark L. Lawrence and Susan M. Bridges}, title = {Accelerating String Set Matching in {FPGA} Hardware for Bioinformatics Research}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-197}, doi = {10.1186/1471-2105-9-197}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DandassBLB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DavidLD08, author = {Maria Pamela C. David and Carlo M. Lapid and Vincent Ricardo M. Daria}, title = {An efficient visualization tool for the analysis of protein mutation matrices}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-218}, doi = {10.1186/1471-2105-9-218}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DavidLD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DavidY08, author = {Fabrice P. A. David and Yum Lina Yip}, title = {SSMap: {A} new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-391}, doi = {10.1186/1471-2105-9-391}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DavidY08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DeBarryLB08, author = {Jeremy D. DeBarry and Renyi Liu and Jeffrey Bennetzen}, title = {Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families {(AAARF)} algorithm}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-235}, doi = {10.1186/1471-2105-9-235}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DeBarryLB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DekhtyarMS08, author = {Michael I. Dekhtyar and Amelie Morin and Vehary Sakanyan}, title = {Triad pattern algorithm for predicting strong promoter candidates in bacterial genomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-233}, doi = {10.1186/1471-2105-9-233}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DekhtyarMS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DelaneauCZ08, author = {Olivier Delaneau and C{\'{e}}dric Coulonges and Jean{-}Fran{\c{c}}ois Zagury}, title = {Shape-IT: new rapid and accurate algorithm for haplotype inference}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-540}, doi = {10.1186/1471-2105-9-540}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DelaneauCZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DentonWTSP08, author = {Anne M. Denton and Jianfei Wu and Megan K. Townsend and Preeti Sule and Birgit M. Pr{\"{u}}{\ss}}, title = {Relating gene expression data on two-component systems to functional annotations in \emph{Escherichia coli}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-294}, doi = {10.1186/1471-2105-9-294}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DentonWTSP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DiMaggioMFFRR08, author = {Peter A. DiMaggio Jr. and Scott R. McAllister and Christodoulos A. Floudas and Xiao{-}Jiang Feng and Joshua D. Rabinowitz and Herschel Rabitz}, title = {Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-458}, doi = {10.1186/1471-2105-9-458}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DiMaggioMFFRR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Diaz-Uriarte08, author = {Ram{\'{o}}n D{\'{\i}}az{-}Uriarte}, title = {SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-30}, doi = {10.1186/1471-2105-9-30}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Diaz-Uriarte08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DingelHLHZM08, author = {Janis Dingel and Pavol Hanus and Niccol{\`{o}} Leonardi and Joachim Hagenauer and J{\"{u}}rgen Zech and Jakob C. Mueller}, title = {Local conservation scores without a priori assumptions on neutral substitution rates}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-190}, doi = {10.1186/1471-2105-9-190}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DingelHLHZM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DogruelDH08, author = {Mutlu Dogruel and Thomas A. Down and Tim J. P. Hubbard}, title = {NestedMICA as an ab initio protein motif discovery tool}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-19}, doi = {10.1186/1471-2105-9-19}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DogruelDH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DolanD08, author = {Peter C. Dolan and Dee R. Denver}, title = {TileQC: {A} system for tile-based quality control of Solexa data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-250}, doi = {10.1186/1471-2105-9-250}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DolanD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DongYSKKMGLZ08, author = {Wei Dong and Litao Yang and Kailin Shen and Banghyun Kim and Gijs A. Kleter and Hans J. P. Marvin and Rong Guo and Wanqi Liang and Dabing Zhang}, title = {{GMDD:} a database of {GMO} detection methods}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-260}, doi = {10.1186/1471-2105-9-260}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DongYSKKMGLZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DoringWRR08, author = {Andreas D{\"{o}}ring and David Weese and Tobias Rausch and Knut Reinert}, title = {SeqAn An efficient, generic {C++} library for sequence analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-11}, doi = {10.1186/1471-2105-9-11}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DoringWRR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DrakosKZLNS08, author = {John Drakos and Marina Karakantza and Nicholas C. Zoumbos and John Lakoumentas and George Nikiforidis and George Sakellaropoulos}, title = {A perspective for biomedical data integration: Design of databases for flow cytometry}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-99}, doi = {10.1186/1471-2105-9-99}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DrakosKZLNS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DresenBHNJ08, author = {Irina Gana Dresen and Tanja Boes and Johannes H{\"{u}}sing and Markus Neuh{\"{a}}user and Karl{-}Heinz J{\"{o}}ckel}, title = {New resampling method for evaluating stability of clusters}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-42}, doi = {10.1186/1471-2105-9-42}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DresenBHNJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DunningBLTR08, author = {Mark J. Dunning and Nuno L. Barbosa{-}Morais and Andy G. Lynch and Simon Tavar{\'{e}} and Matthew E. Ritchie}, title = {Statistical issues in the analysis of Illumina data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-85}, doi = {10.1186/1471-2105-9-85}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DunningBLTR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EalesPSR08, author = {James M. Eales and John W. Pinney and Robert D. Stevens and David L. Robertson}, title = {Methodology capture: discriminating between the "best" and the rest of community practice}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-359}, doi = {10.1186/1471-2105-9-359}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/EalesPSR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EdlundLLBC08, author = {Christopher K. Edlund and Won H. Lee and Dalin Li and David J. Van Den Berg and David V. Conti}, title = {Snagger: {A} user-friendly program for incorporating additional information for tagSNP selection}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-174}, doi = {10.1186/1471-2105-9-174}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/EdlundLLBC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EganMCBCS08, author = {Amy Egan and Anup Mahurkar and Jonathan Crabtree and Jonathan H. Badger and Jane M. Carlton and Joana C. Silva}, title = {{IDEA:} Interactive Display for Evolutionary Analyses}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-524}, doi = {10.1186/1471-2105-9-524}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/EganMCBCS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EklundSW08, author = {Martin Eklund and Ola Spjuth and Jarl E. S. Wikberg}, title = {The \emph{C}\({}^{\mbox{1}}\)\emph{C}\({}^{\mbox{2}}\): {A} framework for simultaneous model selection and assessment}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-360}, doi = {10.1186/1471-2105-9-360}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/EklundSW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ElkonVAUZWMOSBASS08, author = {Ran Elkon and Rita Vesterman and Nira Amit and Igor Ulitsky and Idan Zohar and Mali Weisz and Gilad Mass and Nir Orlev and Giora Sternberg and Ran Blekhman and Jackie Assa and Yosef Shiloh and Ron Shamir}, title = {{SPIKE} - a database, visualization and analysis tool of cellular signaling pathways}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-110}, doi = {10.1186/1471-2105-9-110}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ElkonVAUZWMOSBASS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EllinghausKW08, author = {David Ellinghaus and Stefan Kurtz and Ute Willhoeft}, title = {\emph{LTRharvest}, an efficient and flexible software for \emph{de novo }detection of {LTR} retrotransposons}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-18}, doi = {10.1186/1471-2105-9-18}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/EllinghausKW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ErhardFZ08, author = {Florian Erhard and Caroline C. Friedel and Ralf Zimmer}, title = {{FERN} - a Java framework for stochastic simulation and evaluation of reaction networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-356}, doi = {10.1186/1471-2105-9-356}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ErhardFZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EspadalerEQASMO08, author = {Jordi Espadaler and Narayanan Eswar and Enrique Querol and Francesc X. Avil{\'{e}}s and Andrej Sali and Marc A. Mart{\'{\i}}{-}Renom and Baldomero Oliva}, title = {Prediction of enzyme function by combining sequence similarity and protein interactions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-249}, doi = {10.1186/1471-2105-9-249}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/EspadalerEQASMO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FangHJ08, author = {Yu{-}Ching Fang and Hsuan{-}Cheng Huang and Hsueh{-}Fen Juan}, title = {MeInfoText: associated gene methylation and cancer information from text mining}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-22}, doi = {10.1186/1471-2105-9-22}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FangHJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Farkas08, author = {Rich{\'{a}}rd Farkas}, title = {The strength of co-authorship in gene name disambiguation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-69}, doi = {10.1186/1471-2105-9-69}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Farkas08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FierroTEBMP08, author = {Ana Carolina Fierro and Raphael Thuret and Kristof Engelen and Gilles Bernot and Kathleen Marchal and Nicolas Pollet}, title = {Evaluation of time profile reconstruction from complex two-color microarray designs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-1}, doi = {10.1186/1471-2105-9-1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/FierroTEBMP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FiersBDGH08, author = {Mark W. E. J. Fiers and Ate van der Burgt and Erwin Datema and Joost C. W. de Groot and Roeland C. H. J. van Ham}, title = {High-throughput bioinformatics with the Cyrille2 pipeline system}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-96}, doi = {10.1186/1471-2105-9-96}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FiersBDGH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FoleyK08, author = {Joseph W. Foley and Fumiaki Katagiri}, title = {Unsupervised reduction of random noise in complex data by a row-specific, sorted principal component-guided method}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-508}, doi = {10.1186/1471-2105-9-508}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FoleyK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FongRRWB08, author = {Christine Fong and Laurence Rohmer and Matthew Radey and Michael Wasnick and Mitchell J. Brittnacher}, title = {{PSAT:} {A} web tool to compare genomic neighborhoods of multiple prokaryotic genomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-170}, doi = {10.1186/1471-2105-9-170}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FongRRWB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FormentGRCNB08, author = {Javier Forment and Francisco Gilabert Villam{\'{o}}n and Antonio Robles and Vicente Conejero and Fernando Nuez and Jose M. Blanca}, title = {EST2uni: an open, parallel tool for automated {EST} analysis and database creation, with a data mining web interface and microarray expression data integration}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-5}, doi = {10.1186/1471-2105-9-5}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FormentGRCNB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FourmentG08, author = {Mathieu Fourment and Michael R. Gillings}, title = {A comparison of common programming languages used in bioinformatics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-82}, doi = {10.1186/1471-2105-9-82}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FourmentG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FourmentG08a, author = {Mathieu Fourment and Mark J. Gibbs}, title = {The VirusBanker database uses a Java program to allow flexible searching through \emph{Bunyaviridae }sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-83}, doi = {10.1186/1471-2105-9-83}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FourmentG08a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Frank08, author = {Daniel N. Frank}, title = {XplorSeq: {A} software environment for integrated management and phylogenetic analysis of metagenomic sequence data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-420}, doi = {10.1186/1471-2105-9-420}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Frank08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FromkeHK08, author = {Cornelia Fr{\"{o}}mke and Ludwig A. Hothorn and Siegfried Kropf}, title = {Nonparametric relevance-shifted multiple testing procedures for the analysis of high-dimensional multivariate data with small sample sizes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-54}, doi = {10.1186/1471-2105-9-54}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FromkeHK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FrommoltT08, author = {Peter Frommolt and Roman K. Thomas}, title = {Standardized high-throughput evaluation of cell-based compound screens}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-475}, doi = {10.1186/1471-2105-9-475}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FrommoltT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FurlongDHS08, author = {Laura In{\'{e}}s Furlong and Holger Dach and Martin Hofmann{-}Apitius and Ferran Sanz}, title = {OSIRISv1.2: {A} named entity recognition system for sequence variants of genes in biomedical literature}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-84}, doi = {10.1186/1471-2105-9-84}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FurlongDHS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GabowLBHG08, author = {Aaron Gabow and Sonia M. Leach and William A. Baumgartner Jr. and Lawrence Hunter and Debra Goldberg}, title = {Improving protein function prediction methods with integrated literature data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-198}, doi = {10.1186/1471-2105-9-198}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GabowLBHG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Gadgil08, author = {Mugdha Gadgil}, title = {A Population Proportion approach for ranking differentially expressed genes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-380}, doi = {10.1186/1471-2105-9-380}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Gadgil08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GanLY08, author = {Xiangchao Gan and Alan Wee{-}Chung Liew and Hong Yan}, title = {Discovering biclusters in gene expression data based on high-dimensional linear geometries}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-209}, doi = {10.1186/1471-2105-9-209}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GanLY08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GanesanRDTR08, author = {Hamilton Ganesan and Anna S. Rakitianskaia and Colin F. Davenport and Burkhard T{\"{u}}mmler and Oleg N. Reva}, title = {The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-333}, doi = {10.1186/1471-2105-9-333}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GanesanRDTR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GaoLZLKLZCWJ08, author = {Zhenting Gao and Honglin Li and Hailei Zhang and Xiaofeng Liu and Ling Kang and Xiaomin Luo and Weiliang Zhu and Kaixian Chen and Xicheng Wang and Hualiang Jiang}, title = {{PDTD:} a web-accessible protein database for drug target identification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-104}, doi = {10.1186/1471-2105-9-104}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GaoLZLKLZCWJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GaoS08, author = {Xiaoyi Gao and Joshua D. Starmer}, title = {AWclust: point-and-click software for non-parametric population structure analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-77}, doi = {10.1186/1471-2105-9-77}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GaoS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GaoZ08, author = {Feng Gao and Chun{-}Ting Zhang}, title = {Ori-Finder: {A} web-based system for finding \emph{oriC}s in unannotated bacterial genomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-79}, doi = {10.1186/1471-2105-9-79}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GaoZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GargG08, author = {Aarti Garg and Dinesh Gupta}, title = {VirulentPred: a {SVM} based prediction method for virulent proteins in bacterial pathogens}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-62}, doi = {10.1186/1471-2105-9-62}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GargG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GargR08, author = {Aarti Garg and Gajendra P. S. Raghava}, title = {ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-503}, doi = {10.1186/1471-2105-9-503}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GargR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GeCL08, author = {Huanying Ge and Chao Cheng and Lei M. Li}, title = {A probe-treatment-reference {(PTR)} model for the analysis of oligonucleotide expression microarrays}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-194}, doi = {10.1186/1471-2105-9-194}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GeCL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GeW08, author = {Guangtao Ge and G. William Wong}, title = {Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-275}, doi = {10.1186/1471-2105-9-275}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GeW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GehrkeSKARKC08, author = {Allison Gehrke and Shaojun Sun and Lukasz A. Kurgan and Natalie Ahn and Katheryn Resing and Karen Kafadar and Krzysztof J. Cios}, title = {Improved machine learning method for analysis of gas phase chemistry of peptides}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-515}, doi = {10.1186/1471-2105-9-515}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GehrkeSKARKC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GesellW08, author = {Tanja Gesell and Stefan Washietl}, title = {Dinucleotide controlled null models for comparative {RNA} gene prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-248}, doi = {10.1186/1471-2105-9-248}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GesellW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GharaibehFG08, author = {Raad Z. Gharaibeh and Anthony Fodor and Cynthia Gibas}, title = {Background correction using dinucleotide affinities improves the performance of {GCRMA}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-452}, doi = {10.1186/1471-2105-9-452}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GharaibehFG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GhoshGDH08, author = {Samiran Ghosh and David F. Grant and Dipak K. Dey and Dennis W. Hill}, title = {A semiparametric modeling framework for potential biomarker discovery and the development of metabonomic profiles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-38}, doi = {10.1186/1471-2105-9-38}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GhoshGDH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GiancarloSU08, author = {Raffaele Giancarlo and Davide Scaturro and Filippo Utro}, title = {Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-462}, doi = {10.1186/1471-2105-9-462}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GiancarloSU08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GianchandaniOBMP08, author = {Erwin P. Gianchandani and Matthew A. Oberhardt and Anthony P. Burgard and Costas D. Maranas and Jason A. Papin}, title = {Predicting biological system objectives de novo from internal state measurements}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-43}, doi = {10.1186/1471-2105-9-43}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GianchandaniOBMP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GilchristCHPSUP08, author = {Michael J. Gilchrist and Mikkel B. Christensen and Richard Harland and Nicolas Pollet and James C. Smith and Naoto Ueno and Nancy Papalopulu}, title = {Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-442}, doi = {10.1186/1471-2105-9-442}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GilchristCHPSUP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GolovinH08, author = {Adel Golovin and Kim Henrick}, title = {MSDmotif: exploring protein sites and motifs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-312}, doi = {10.1186/1471-2105-9-312}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GolovinH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GonzalezCAVJYE08, author = {Juan R. Gonz{\'{a}}lez and Josep L. Carrasco and Llu{\'{\i}}s Armengol and Sergi Villatoro and Llu{\'{\i}}s Jover and Yutaka Yasui and Xavier Estivill}, title = {Probe-specific mixed-model approach to detect copy number differences using multiplex ligation-dependent probe amplification {(MLPA)}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-261}, doi = {10.1186/1471-2105-9-261}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GonzalezCAVJYE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GonzalezL08, author = {Alvaro J. Gonz{\'{a}}lez and Li Liao}, title = {Clustering exact matches of pairwise sequence alignments by weighted linear regression}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-102}, doi = {10.1186/1471-2105-9-102}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GonzalezL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GormleyT08, author = {Michael Gormley and Aydin T{\"{o}}zeren}, title = {Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-486}, doi = {10.1186/1471-2105-9-486}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GormleyT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Grafahrend-BelauSHSJGSWK08, author = {Eva Grafahrend{-}Belau and Falk Schreiber and Monika Heiner and Andrea Sackmann and Bj{\"{o}}rn H. Junker and Stefanie Grunwald and Astrid Speer and Katja Winder and Ina Koch}, title = {Modularization of biochemical networks based on classification of Petri net t-invariants}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-90}, doi = {10.1186/1471-2105-9-90}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Grafahrend-BelauSHSJGSWK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GromihaY08, author = {M. Michael Gromiha and Yukimitsu Yabuki}, title = {Functional discrimination of membrane proteins using machine learning techniques}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-135}, doi = {10.1186/1471-2105-9-135}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GromihaY08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GronwaldHH08, author = {Wolfram Gronwald and Tim Hohm and Daniel Hoffmann}, title = {Evolutionary Pareto-optimization of stably folding peptides}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-109}, doi = {10.1186/1471-2105-9-109}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GronwaldHH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GrootMLH08, author = {Saskia de Groot and Thomas Mailund and Gerton Lunter and Jotun Hein}, title = {Investigating selection on viruses: a statistical alignment approach}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-304}, doi = {10.1186/1471-2105-9-304}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GrootMLH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GrosdidierF08, author = {Sol{\`{e}}ne Grosdidier and Juan Fern{\'{a}}ndez{-}Recio}, title = {Identification of hot-spot residues in protein-protein interactions by computational docking}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-447}, doi = {10.1186/1471-2105-9-447}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GrosdidierF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GrothWPL08, author = {Philip Groth and Bertram Weiss and Hans{-}Dieter Pohlenz and Ulf Leser}, title = {Mining phenotypes for gene function prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-136}, doi = {10.1186/1471-2105-9-136}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GrothWPL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GruberBHW08, author = {Andreas R. Gruber and Stephan H. Bernhart and Ivo L. Hofacker and Stefan Washietl}, title = {Strategies for measuring evolutionary conservation of {RNA} secondary structures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-122}, doi = {10.1186/1471-2105-9-122}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GruberBHW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GruntmanQSRMS08, author = {Eyal Gruntman and Yijun Qi and R. Keith Slotkin and Ted Roeder and Robert A. Martienssen and Ravi Sachidanandam}, title = {Kismeth: Analyzer of plant methylation states through bisulfite sequencing}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-371}, doi = {10.1186/1471-2105-9-371}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GruntmanQSRMS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GschloesslGC08, author = {Bernhard Gschloessl and Yann Guermeur and J. Mark Cock}, title = {{HECTAR:} {A} method to predict subcellular targeting in heterokonts}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-393}, doi = {10.1186/1471-2105-9-393}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GschloesslGC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GuesciniSRSS08, author = {Michele Guescini and Davide Sisti and Marco B. L. Rocchi and Laura Stocchi and Vilberto Stocchi}, title = {A new real-time {PCR} method to overcome significant quantitative inaccuracy due to slight amplification inhibition}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-326}, doi = {10.1186/1471-2105-9-326}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GuesciniSRSS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GuimaraesP08, author = {Katia S. Guimar{\~{a}}es and Teresa M. Przytycka}, title = {Interrogating domain-domain interactions with parsimony based approaches}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-171}, doi = {10.1186/1471-2105-9-171}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GuimaraesP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HahneMAPWB08, author = {Florian Hahne and Alexander Mehrle and Dorit Arlt and Annemarie Poustka and Stefan Wiemann and Tim Bei{\ss}barth}, title = {Extending pathways based on gene lists using InterPro domain signatures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-3}, doi = {10.1186/1471-2105-9-3}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HahneMAPWB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HaiminenMT08, author = {Niina Haiminen and Heikki Mannila and Evimaria Terzi}, title = {Determining significance of pairwise co-occurrences of events in bursty sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-336}, doi = {10.1186/1471-2105-9-336}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HaiminenMT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Halling-BrownMS08, author = {Mark D. Halling{-}Brown and David S. Moss and Adrian J. Shepherd}, title = {Towards a lightweight generic computational grid framework for biological research}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-407}, doi = {10.1186/1471-2105-9-407}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Halling-BrownMS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HambyH08, author = {Stephen E. Hamby and Jonathan D. Hirst}, title = {Prediction of glycosylation sites using random forests}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-500}, doi = {10.1186/1471-2105-9-500}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HambyH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HamiltonT08, author = {Nicholas A. Hamilton and Rohan D. Teasdale}, title = {Visualizing and clustering high throughput sub-cellular localization imaging}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-81}, doi = {10.1186/1471-2105-9-81}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HamiltonT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HammamiZNHF08, author = {Riadh Hammami and Abdelmajid Zouhir and Karim Naghmouchi and Jeannette Ben Hamida and Ismail Fliss}, title = {SciDBMaker: new software for computer-aided design of specialized biological databases}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-121}, doi = {10.1186/1471-2105-9-121}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HammamiZNHF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HanWB08, author = {Lianyi Han and Yanli Wang and Stephen H. Bryant}, title = {Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-401}, doi = {10.1186/1471-2105-9-401}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HanWB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HaneO08, author = {James K. Hane and Richard P. Oliver}, title = {{RIPCAL:} a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-478}, doi = {10.1186/1471-2105-9-478}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HaneO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HeroldKG08, author = {Julia Herold and Stefan Kurtz and Robert Giegerich}, title = {Efficient computation of absent words in genomic sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-167}, doi = {10.1186/1471-2105-9-167}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HeroldKG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HestandGVODH08, author = {Matthew S. Hestand and Michiel van Galen and Michel P. Villerius and Gert{-}Jan B. van Ommen and Johan T. den Dunnen and Peter A. C. 't Hoen}, title = {CORE{\_}TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-495}, doi = {10.1186/1471-2105-9-495}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HestandGVODH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HijumBZKMTKK08, author = {Sacha A. F. T. van Hijum and Richard J. S. Baerends and Aldert L. Zomer and Harma A. Karsens and Victoria Martin{-}Requena and Oswaldo Trelles and Jan Kok and Oscar P. Kuipers}, title = {Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-93}, doi = {10.1186/1471-2105-9-93}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HijumBZKMTKK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HillHFMSSTG08, author = {Jon Hill and Matthew Hambley and Thorsten Forster and Muriel Mewissen and Terence M. Sloan and Florian Scharinger and Arthur S. Trew and Peter Ghazal}, title = {{SPRINT:} {A} new parallel framework for {R}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-558}, doi = {10.1186/1471-2105-9-558}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HillHFMSSTG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HoffTLDMM08, author = {Katharina Jasmin Hoff and Maike Tech and Thomas Lingner and Rolf Daniel and Burkhard Morgenstern and Peter Meinicke}, title = {Gene prediction in metagenomic fragments: {A} large scale machine learning approach}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-217}, doi = {10.1186/1471-2105-9-217}, timestamp = {Tue, 24 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HoffTLDMM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HousemanCYMKWNWZWK08, author = {Eugene Andres Houseman and Brock C. Christensen and Ru{-}Fang Yeh and Carmen J. Marsit and Margaret R. Karagas and Margaret R. Wrensch and Heather H. Nelson and Joseph Wiemels and Shichun Zheng and John K. Wiencke and Karl T. Kelsey}, title = {Model-based clustering of {DNA} methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-365}, doi = {10.1186/1471-2105-9-365}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HousemanCYMKWNWZWK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HsingC08, author = {Michael Hsing and Artem Cherkasov}, title = {Indel {PDB:} {A} database of structural insertions and deletions derived from sequence alignments of closely related proteins}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-293}, doi = {10.1186/1471-2105-9-293}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HsingC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuCSKY08, author = {Meng Hu and Kwangmin Choi and Wei Su and Sun Kim and Jiong Yang}, title = {A gene pattern mining algorithm using interchangeable gene sets for prokaryotes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-124}, doi = {10.1186/1471-2105-9-124}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuCSKY08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuY08, author = {Jing Hu and Changhui Yan}, title = {Identification of deleterious non-synonymous single nucleotide polymorphisms using sequence-derived information}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-297}, doi = {10.1186/1471-2105-9-297}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuY08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuZJZS08, author = {Gang{-}Qing Hu and Xiaobin Zheng and Lining Ju and Huaiqiu Zhu and Zhen{-}Su She}, title = {Computational evaluation of {TIS} annotation for prokaryotic genomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-160}, doi = {10.1186/1471-2105-9-160}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuZJZS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuangBGWZL08, author = {Yanxin Huang and Yongli Bao and Shu Yan Guo and Yan Wang and Chunguang Zhou and Yuxin Li}, title = {Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-538}, doi = {10.1186/1471-2105-9-538}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuangBGWZL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuangTHHH08, author = {Wen{-}Lin Huang and Chun{-}Wei Tung and Shih{-}Wen Ho and Shiow{-}Fen Hwang and Shinn{-}Ying Ho}, title = {ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-80}, doi = {10.1186/1471-2105-9-80}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HuangTHHH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuangTHZZY08, author = {Zhong{-}Xi Huang and Hui{-}Yong Tian and Zhen{-}Fu Hu and Yi{-}Bo Zhou and Jin Zhao and Kai{-}Tai Yao}, title = {GenCLiP: a software program for clustering gene lists by literature profiling and constructing gene co-occurrence networks related to custom keywords}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-308}, doi = {10.1186/1471-2105-9-308}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuangTHZZY08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuangZSMZSB08, author = {Liping Huang and Wenying Zhu and Christopher P. Saunders and James N. MacLeod and Mai Zhou and Arnold J. Stromberg and Arne C. Bathke}, title = {A novel application of quantile regression for identification of biomarkers exemplified by equine cartilage microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-300}, doi = {10.1186/1471-2105-9-300}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuangZSMZSB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HumburgBS08, author = {Peter Humburg and David W. Bulger and Glenn Stone}, title = {Parameter estimation for robust {HMM} analysis of ChIP-chip data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-343}, doi = {10.1186/1471-2105-9-343}, timestamp = {Tue, 05 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HumburgBS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HunterLFBJOC08, author = {Lawrence Hunter and Zhiyong Lu and James Firby and William A. Baumgartner Jr. and Helen L. Johnson and Philip V. Ogren and K. Bretonnel Cohen}, title = {OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-78}, doi = {10.1186/1471-2105-9-78}, timestamp = {Tue, 26 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HunterLFBJOC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HuntleyTNBB08, author = {Derek Huntley and Y. Amy Tang and Tatyana B. Nesterova and Sarah A. Butcher and Neil Brockdorff}, title = {Genome Environment Browser {(GEB):} a dynamic browser for visualising high-throughput experimental data in the context of genome features}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-501}, doi = {10.1186/1471-2105-9-501}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HuntleyTNBB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HwangCZR08, author = {Woochang Hwang and Young{-}Rae Cho and Aidong Zhang and Murali Ramanathan}, title = {{CASCADE:} a novel quasi all paths-based network analysis algorithm for clustering biological interactions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-64}, doi = {10.1186/1471-2105-9-64}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HwangCZR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IafollaDM08, author = {Marco A. J. Iafolla and Guang Qiang Dong and David R. McMillen}, title = {Increasing the efficiency of bacterial transcription simulations: When to exclude the genome without loss of accuracy}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-373}, doi = {10.1186/1471-2105-9-373}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/IafollaDM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IerselKPHCCE08, author = {Martijn P. van Iersel and Thomas Kelder and Alexander R. Pico and Kristina Hanspers and Susan L. Coort and Bruce R. Conklin and Chris T. A. Evelo}, title = {Presenting and exploring biological pathways with PathVisio}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-399}, doi = {10.1186/1471-2105-9-399}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/IerselKPHCCE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IspolatovM08, author = {Iaroslav Ispolatov and Sergei Maslov}, title = {Detection of the dominant direction of information flow and feedback links in densely interconnected regulatory networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-424}, doi = {10.1186/1471-2105-9-424}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/IspolatovM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IwamaHMMI08, author = {Hisakazu Iwama and Yukio Hori and Kensuke Matsumoto and Koji Murao and Toshihiko Ishida}, title = {ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-112}, doi = {10.1186/1471-2105-9-112}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/IwamaHMMI08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IzarzugazaJPPV08, author = {Jos{\'{e}} M. G. Izarzugaza and David de Juan and Carles Pons and Florencio Pazos and Alfonso Valencia}, title = {Enhancing the prediction of protein pairings between interacting families using orthology information}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-35}, doi = {10.1186/1471-2105-9-35}, timestamp = {Sat, 19 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/IzarzugazaJPPV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JacobHSV08, author = {Laurent Jacob and Brice Hoffmann and V{\'{e}}ronique Stoven and Jean{-}Philippe Vert}, title = {Virtual screening of GPCRs: An \emph{in silico} chemogenomics approach}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-363}, doi = {10.1186/1471-2105-9-363}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JacobHSV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JamesonGGBAOP08, author = {Daniel Jameson and Kevin L. Garwood and Christopher Garwood and Tim Booth and Pinar Alper and Stephen G. Oliver and Norman W. Paton}, title = {Data capture in bioinformatics: requirements and experiences with Pedro}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-183}, doi = {10.1186/1471-2105-9-183}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JamesonGGBAOP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JankyH08, author = {Rekin's Janky and Jacques van Helden}, title = {Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-37}, doi = {10.1186/1471-2105-9-37}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/JankyH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JanssenRG08, author = {Stefan Janssen and Jens Reeder and Robert Giegerich}, title = {Shape based indexing for faster search of {RNA} family databases}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-131}, doi = {10.1186/1471-2105-9-131}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JanssenRG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JelierHSDOKM08, author = {Rob Jelier and Peter A. C. 't Hoen and Ellen Sterrenburg and Johan T. den Dunnen and Gert{-}Jan B. van Ommen and Jan A. Kors and Barend Mons}, title = {Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-291}, doi = {10.1186/1471-2105-9-291}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/JelierHSDOKM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JenYTSLHW08, author = {Chih{-}Hung Jen and Tsun{-}Po Yang and Chien{-}Yi Tung and Shu{-}Han Su and Chi{-}Hung Lin and Ming{-}Ta Hsu and Hsei{-}Wei Wang}, title = {Signature Evaluation Tool {(SET):} a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-58}, doi = {10.1186/1471-2105-9-58}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JenYTSLHW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JiangAGM08, author = {Minghui Jiang and James Anderson and Joel Gillespie and Martin Mayne}, title = {uShuffle: {A} useful tool for shuffling biological sequences while preserving the k-let counts}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-192}, doi = {10.1186/1471-2105-9-192}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JiangAGM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JiangLHPJDWKL08, author = {Ning Jiang and Lindsey J. Leach and Xiaohua Hu and Elena Potokina and Tianye Jia and Arnis Druka and Robbie Waugh and Michael J. Kearsey and Zewei Luo}, title = {Methods for evaluating gene expression from Affymetrix microarray datasets}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-284}, doi = {10.1186/1471-2105-9-284}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/JiangLHPJDWKL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JiangNSKK08, author = {Xiaoyu Jiang and Naoki Nariai and Martin Steffen and Simon Kasif and Eric D. Kolaczyk}, title = {Integration of relational and hierarchical network information for protein function prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-350}, doi = {10.1186/1471-2105-9-350}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JiangNSKK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JinMZL08, author = {Bo Jin and Brian Muller and Chengxiang Zhai and Xinghua Lu}, title = {Multi-label literature classification based on the Gene Ontology graph}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-525}, doi = {10.1186/1471-2105-9-525}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JinMZL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JonesKWLPSGC08, author = {Thouis R. Jones and In Han Kang and Douglas B. Wheeler and Robert A. Lindquist and Adam Papallo and David M. Sabatini and Polina Golland and Anne E. Carpenter}, title = {CellProfiler Analyst: data exploration and analysis software for complex image-based screens}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-482}, doi = {10.1186/1471-2105-9-482}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/JonesKWLPSGC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JonnalagaddaS08, author = {Sudhakar Jonnalagadda and Rajagopalan Srinivasan}, title = {Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-267}, doi = {10.1186/1471-2105-9-267}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JonnalagaddaS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JorgMW08, author = {Thomas J{\"{o}}rg and Olivier C. Martin and Andreas Wagner}, title = {Neutral network sizes of biological {RNA} molecules can be computed and are not atypically small}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-464}, doi = {10.1186/1471-2105-9-464}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JorgMW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JorstadMB08, author = {Tommy S. J{\o}rstad and Herman Midelfart and Atle M. Bones}, title = {A mixture model approach to sample size estimation in two-sample comparative microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-117}, doi = {10.1186/1471-2105-9-117}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JorstadMB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JudsonESLS08, author = {Richard S. Judson and Fathi Elloumi and R. Woodrow Setzer and Zhen Li and Imran Shah}, title = {A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-241}, doi = {10.1186/1471-2105-9-241}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JudsonESLS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JungLLK08, author = {Inkyung Jung and Jaehyung Lee and Soo{-}Young Lee and Dongsup Kim}, title = {Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-298}, doi = {10.1186/1471-2105-9-298}, timestamp = {Fri, 17 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/JungLLK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KainkaryamW08, author = {Raghunandan M. Kainkaryam and Peter J. Woolf}, title = {poolHiTS: {A} Shifted Transversal Design based pooling strategy for high-throughput drug screening}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-256}, doi = {10.1186/1471-2105-9-256}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KainkaryamW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KaramanisSLMVGDB08, author = {Nikiforos Karamanis and Ruth L. Seal and Ian Lewin and Peter McQuilton and Andreas Vlachos and Caroline Gasperin and Rachel A. Drysdale and Ted Briscoe}, title = {Natural Language Processing in aid of FlyBase curators}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-193}, doi = {10.1186/1471-2105-9-193}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KaramanisSLMVGDB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Karimpour-FardLGH08, author = {Anis Karimpour{-}Fard and Sonia M. Leach and Ryan T. Gill and Lawrence Hunter}, title = {Predicting protein linkages in bacteria: Which method is best depends on task}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-397}, doi = {10.1186/1471-2105-9-397}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Karimpour-FardLGH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KatohT08, author = {Kazutaka Katoh and Hiroyuki Toh}, title = {Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-212}, doi = {10.1186/1471-2105-9-212}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KatohT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KechrisL08, author = {Katerina J. Kechris and Hao Li}, title = {c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-506}, doi = {10.1186/1471-2105-9-506}, timestamp = {Sun, 18 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KechrisL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KeichGGBLDT08, author = {Uri Keich and Hong Gao and Jeffrey S. Garretson and Anand Bhaskar and Ivan Liachko and Justin Donato and Bik K. Tye}, title = {Computational detection of significant variation in binding affinity across two sets of sequences with application to the analysis of replication origins in yeast}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-372}, doi = {10.1186/1471-2105-9-372}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KeichGGBLDT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KellerBAGKKKL08, author = {Andreas Keller and Christina Backes and Maher Al{-}Awadhi and Andreas Gerasch and Jan K{\"{u}}ntzer and Oliver Kohlbacher and Michael Kaufmann and Hans{-}Peter Lenhof}, title = {GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-552}, doi = {10.1186/1471-2105-9-552}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KellerBAGKKKL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KellerOSKW08, author = {Oliver Keller and Florian Odronitz and Mario Stanke and Martin Kollmar and Stephan Waack}, title = {Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-278}, doi = {10.1186/1471-2105-9-278}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KellerOSKW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KestlerMKBGLKZW08, author = {Hans A. Kestler and Andr{\'{e}} M{\"{u}}ller and Johann M. Kraus and Malte Buchholz and Thomas M. Gress and Hongfang Liu and David W. Kane and Barry Zeeberg and John N. Weinstein}, title = {VennMaster: Area-proportional Euler diagrams for functional {GO} analysis of microarrays}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-67}, doi = {10.1186/1471-2105-9-67}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KestlerMKBGLKZW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Kiiveri08, author = {Harri T. Kiiveri}, title = {A general approach to simultaneous model fitting and variable elimination in response models for biological data with many more variables than observations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-195}, doi = {10.1186/1471-2105-9-195}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Kiiveri08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimBT08, author = {Chang Sik Kim and Cheol Soo Bae and Hong Joon Tcha}, title = {A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-56}, doi = {10.1186/1471-2105-9-56}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimBT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimJSHPS08, author = {Jong{-}Min Kim and Yoon{-}Sung Jung and Engin A. Sungur and Kap{-}Hoon Han and Changyi Park and Insuk Sohn}, title = {A copula method for modeling directional dependence of genes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-225}, doi = {10.1186/1471-2105-9-225}, timestamp = {Fri, 11 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimJSHPS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimKJCR08, author = {Ki{-}Yeol Kim and Dong Hyuk Ki and Hei{-}Cheul Jeung and Hyun Cheol Chung and Sun Young Rha}, title = {Improving the prediction accuracy in classification using the combined data sets by ranks of gene expressions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-283}, doi = {10.1186/1471-2105-9-283}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimKJCR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimOT08, author = {Jin{-}Dong Kim and Tomoko Ohta and Jun'ichi Tsujii}, title = {Corpus annotation for mining biomedical events from literature}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-10}, doi = {10.1186/1471-2105-9-10}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KimOT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimPD08, author = {Hyunsoo Kim and Haesun Park and Barry L. Drake}, title = {Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-211}, doi = {10.1186/1471-2105-9-211}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimPD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimPKCKPCPKYPLB08, author = {Jeong{-}Gu Kim and Daeui Park and Byoung{-}Chul Kim and Seong{-}Woong Cho and Yeong Tae Kim and Young{-}Jin Park and Hee Jung Cho and Hyunseok Park and Ki{-}Bong Kim and Kyong{-}Oh Yoon and Soo{-}Jun Park and Byoung{-}Moo Lee and Jong Bhak}, title = {Predicting the Interactome of \emph{Xanthomonas oryzae }pathovar oryzae for target selection and {DB} service}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-41}, doi = {10.1186/1471-2105-9-41}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimPKCKPCPKYPLB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimTMS08, author = {Nak{-}Kyeong Kim and Kannan Tharakaraman and Leonardo Mari{\~{n}}o{-}Ram{\'{\i}}rez and John L. Spouge}, title = {Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-262}, doi = {10.1186/1471-2105-9-262}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KimTMS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimW08, author = {Kyung In Kim and Mark A. van de Wiel}, title = {Effects of dependence in high-dimensional multiple testing problems}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-114}, doi = {10.1186/1471-2105-9-114}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KimW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimuraSYMMH08, author = {Shuhei Kimura and Katsuki Sonoda and Soichiro Yamane and Hideki Maeda and Koki Matsumura and Mariko Hatakeyama}, title = {Function approximation approach to the inference of reduced NGnet models of genetic networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-23}, doi = {10.1186/1471-2105-9-23}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimuraSYMMH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KlepperSAJD08, author = {Kjetil Klepper and Geir Kjetil Sandve and Osman Abul and Jostein Johansen and Finn Drabl{\o}s}, title = {Assessment of composite motif discovery methods}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-123}, doi = {10.1186/1471-2105-9-123}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KlepperSAJD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KnowltonLRBEE08, author = {Michelle N. Knowlton and Tongbin Li and Yongliang Ren and Brent R. Bill and Lynda B. M. Ellis and Stephen C. Ekker}, title = {A PATO-compliant zebrafish screening database {(MODB):} management of morpholino knockdown screen information}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-7}, doi = {10.1186/1471-2105-9-7}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KnowltonLRBEE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KostkaUCF08, author = {Martin Kostka and Magdalena Uzlikova and Ivan Cepicka and Jaroslav Flegr}, title = {SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of \emph{Blastocystis}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-341}, doi = {10.1186/1471-2105-9-341}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KostkaUCF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KouskoumvekakiYJOP08, author = {Irene Kouskoumvekaki and Zhiyong Yang and Svava {\'{O}}sk J{\'{o}}nsd{\'{o}}ttir and Lisbeth Olsson and Gianni Panagiotou}, title = {Identification of biomarkers for genotyping \emph{Aspergilli }using non-linear methods for clustering and classification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-59}, doi = {10.1186/1471-2105-9-59}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KouskoumvekakiYJOP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KrajSGPM08, author = {Piotr Kraj and Ashok Sharma and Nikhil Garge and Robert H. Podolsky and Richard A. McIndoe}, title = {ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-200}, doi = {10.1186/1471-2105-9-200}, timestamp = {Tue, 16 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KrajSGPM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KratzTK08, author = {Anton Kratz and Masaru Tomita and Arun Krishnan}, title = {GeNESiS: gene network evolution simulation software}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-541}, doi = {10.1186/1471-2105-9-541}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KratzTK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KrebsFT08, author = {Arnaud Krebs and Mattia Frontini and L{\`{a}}szl{\`{o}} Tora}, title = {{GPAT:} Retrieval of genomic annotation from large genomic position datasets}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-533}, doi = {10.1186/1471-2105-9-533}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KrebsFT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KristensenWLECFKKL08, author = {David M. Kristensen and R. Matthew Ward and Andreas Martin Lisewski and Serkan Erdin and Brian Y. Chen and Viacheslav Fofanov and Marek Kimmel and Lydia E. Kavraki and Olivier Lichtarge}, title = {Prediction of enzyme function based on 3D templates of evolutionarily important amino acids}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-17}, doi = {10.1186/1471-2105-9-17}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KristensenWLECFKKL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KuH08, author = {Shih{-}Yen Ku and Yuh{-}Jyh Hu}, title = {Protein structure search and local structure characterization}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-349}, doi = {10.1186/1471-2105-9-349}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KuH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KuhnENS08, author = {Stefan Kuhn and Bj{\"{o}}rn Egert and Steffen Neumann and Christoph Steinbeck}, title = {Building blocks for automated elucidation of metabolites: Machine learning methods for {NMR} prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-400}, doi = {10.1186/1471-2105-9-400}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KuhnENS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KuhnLD08, author = {Alexandre Kuhn and Ruth Luthi{-}Carter and Mauro Delorenzi}, title = {Cross-species and cross-platform gene expression studies with the Bioconductor-compliant {R} package 'annotationTools'}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-26}, doi = {10.1186/1471-2105-9-26}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KuhnLD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KurganCC08, author = {Lukasz A. Kurgan and Krzysztof J. Cios and Ke Chen}, title = {{SCPRED:} Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-226}, doi = {10.1186/1471-2105-9-226}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KurganCC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KwasigrochWGR08, author = {Jean Marc Kwasigroch and Ren{\'{e}} Wintjens and Dimitri Gilis and Marianne Rooman}, title = {SODa: An Mn/Fe superoxide dismutase prediction and design server}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-257}, doi = {10.1186/1471-2105-9-257}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KwasigrochWGR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LagorceSGMV08, author = {David Lagorce and Olivier Sperandio and Herv{\'{e}} Galons and Maria A. Miteva and Bruno O. Villoutreix}, title = {FAF-Drugs2: Free ADME/tox filtering tool to assist drug discovery and chemical biology projects}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-396}, doi = {10.1186/1471-2105-9-396}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LagorceSGMV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LangeTNG08, author = {Eva Lange and Ralf Tautenhahn and Steffen Neumann and Clemens Gr{\"{o}}pl}, title = {Critical assessment of alignment procedures for {LC-MS} proteomics and metabolomics measurements}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-375}, doi = {10.1186/1471-2105-9-375}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LangeTNG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LangfelderH08, author = {Peter Langfelder and Steve Horvath}, title = {{WGCNA:} an {R} package for weighted correlation network analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-559}, doi = {10.1186/1471-2105-9-559}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LangfelderH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LangilleHB08, author = {Morgan G. I. Langille and William W. L. Hsiao and Fiona S. L. Brinkman}, title = {Evaluation of genomic island predictors using a comparative genomics approach}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-329}, doi = {10.1186/1471-2105-9-329}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LangilleHB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LapinshESPW08, author = {Maris Lapins and Martin Eklund and Ola Spjuth and Peteris Prusis and Jarl E. S. Wikberg}, title = {Proteochemometric modeling of {HIV} protease susceptibility}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-181}, doi = {10.1186/1471-2105-9-181}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LapinshESPW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LauNTPKJH08, author = {Christopher Lau and Lydia Ng and Carol L. Thompson and Sayan D. Pathak and Leonard Kuan and Allan Jones and Michael Hawrylycz}, title = {Exploration and visualization of gene expression with neuroanatomy in the adult mouse brain}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-153}, doi = {10.1186/1471-2105-9-153}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LauNTPKJH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LaunayS08, author = {Guillaume Launay and Thomas Simonson}, title = {Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-427}, doi = {10.1186/1471-2105-9-427}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LaunayS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeKN08, author = {Tae{-}Ho Lee and Yeon{-}Ki Kim and Baek Hie Nahm}, title = {GBParsy: {A} GenBank flatfile parser library with high speed}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-321}, doi = {10.1186/1471-2105-9-321}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeKN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeMBV08, author = {Ho{-}Joon Lee and Thomas Manke and Ricardo Bringas and Martin Vingron}, title = {Prioritization of gene regulatory interactions from large-scale modules in yeast}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-32}, doi = {10.1186/1471-2105-9-32}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeMBV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeSHCYS08, author = {Hwan Young Lee and Injee Song and Eunho Ha and Sung{-}Bae Cho and Woo Ick Yang and Kyoung{-}Jin Shin}, title = {mtDNAmanager: a Web-based tool for the management and quality analysis of mitochondrial {DNA} control-region sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-483}, doi = {10.1186/1471-2105-9-483}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeSHCYS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeWK08, author = {Sang Hong Lee and Julius H. J. Van der Werf and Brian P. Kinghorn}, title = {Using an evolutionary algorithm and parallel computing for haplotyping in a general complex pedigree with multiple marker loci}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-189}, doi = {10.1186/1471-2105-9-189}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeWK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeWLMS08, author = {Wah{-}Heng Lee and Christopher W. Wong and Wan Yee Leong and Lance D. Miller and Wing{-}Kin Sung}, title = {{LOMA:} {A} fast method to generate efficient tagged-random primers despite amplification bias of random {PCR} on pathogens}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-368}, doi = {10.1186/1471-2105-9-368}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeWLMS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeesJ08, author = {Jonathan G. Lees and Robert W. Janes}, title = {Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-24}, doi = {10.1186/1471-2105-9-24}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeesJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LehmannSP08, author = {J{\"{o}}rg Lehmann and Peter F. Stadler and Sonja J. Prohaska}, title = {SynBlast: Assisting the analysis of conserved synteny information}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-351}, doi = {10.1186/1471-2105-9-351}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LehmannSP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LemaitreTGS08, author = {Claire Lemaitre and Eric Tannier and Christian Gautier and Marie{-}France Sagot}, title = {Precise detection of rearrangement breakpoints in mammalian chromosomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-286}, doi = {10.1186/1471-2105-9-286}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LemaitreTGS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LemoineLL08, author = {Fr{\'{e}}d{\'{e}}ric Lemoine and Bernard Labedan and Olivier Lespinet}, title = {SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-536}, doi = {10.1186/1471-2105-9-536}, timestamp = {Thu, 25 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LemoineLL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeontovichTH08, author = {Andrey M. Leontovich and Konstantin Y. Tokmachev and Hans C. van Houwelingen}, title = {The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-31}, doi = {10.1186/1471-2105-9-31}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeontovichTH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeyritzSBKRBBPG08, author = {Johan Leyritz and St{\'{e}}phane Schicklin and Sylvain Blachon and C{\'{e}}line Keime and C{\'{e}}line Robardet and Jean{-}Fran{\c{c}}ois Boulicaut and J{\'{e}}r{\'{e}}my Besson and Ruggero G. Pensa and Olivier Gandrillon}, title = {{SQUAT:} {A} web tool to mine human, murine and avian {SAGE} data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-378}, doi = {10.1186/1471-2105-9-378}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LeyritzSBKRBBPG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Li08, author = {Cheng Li}, title = {Automating dChip: toward reproducible sharing of microarray data analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-231}, doi = {10.1186/1471-2105-9-231}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Li08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiBSBMBFML08, author = {Kelvin Li and Anushka Brownley and Timothy B. Stockwell and Karen Beeson and Tina C. McIntosh and Dana Busam and Steve Ferriera and Sean Murphy and Samuel Levy}, title = {Novel computational methods for increasing {PCR} primer design effectiveness in directed sequencing}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-191}, doi = {10.1186/1471-2105-9-191}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiBSBMBFML08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiBWWGSM08, author = {Cheng Li and Rameen Beroukhim and Barbara A. Weir and Wendy Winckler and Levi A. Garraway and William R. Sellers and Matthew Meyerson}, title = {Major copy proportion analysis of tumor samples using {SNP} arrays}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-204}, doi = {10.1186/1471-2105-9-204}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiBWWGSM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiC08, author = {Jing Li and Yixuan Chen}, title = {Generating samples for association studies based on HapMap data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-44}, doi = {10.1186/1471-2105-9-44}, timestamp = {Fri, 19 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiCVWSOWOPGOK08, author = {Peter Li and Juan I. Castrillo and Giles Velarde and Ingo Wassink and Stian Soiland{-}Reyes and Stuart Owen and David Withers and Tom Oinn and Matthew R. Pocock and Carole A. Goble and Stephen G. Oliver and Douglas B. Kell}, title = {Performing statistical analyses on quantitative data in Taverna workflows: An example using {R} and maxdBrowse to identify differentially-expressed genes from microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-334}, doi = {10.1186/1471-2105-9-334}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiCVWSOWOPGOK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiCWHC08, author = {Min Li and Jianer Chen and Jianxin Wang and Bin Hu and Gang Chen}, title = {Modifying the DPClus algorithm for identifying protein complexes based on new topological structures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-398}, doi = {10.1186/1471-2105-9-398}, timestamp = {Fri, 21 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LiCWHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiSJ08, author = {Nan Li and Zhonghua Sun and Fan Jiang}, title = {Prediction of protein-protein binding site by using core interface residue and support vector machine}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-553}, doi = {10.1186/1471-2105-9-553}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiSJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LianLLYCF08, author = {Ie{-}Bin Lian and Yi{-}Hsien Lin and Ying{-}Chao Lin and Hsin{-}Chou Yang and Chee{-}Jang Chang and Cathy S. J. Fann}, title = {Using the longest significance run to estimate region-specific p-values in genetic association mapping studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-246}, doi = {10.1186/1471-2105-9-246}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LianLLYCF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiangK08, author = {Yulan Liang and Arpad Kelemen}, title = {Bayesian models and meta analysis for multiple tissue gene expression data following corticosteroid administration}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-354}, doi = {10.1186/1471-2105-9-354}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiangK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Lin08, author = {Jimmy Lin}, title = {PageRank without hyperlinks: Reranking with PubMed related article networks for biomedical text retrieval}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-270}, doi = {10.1186/1471-2105-9-270}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Lin08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LinCWWXG08, author = {Guohui Lin and Zhipeng Cai and Junfeng Wu and Xiu{-}Feng Wan and Lizhe Xu and Randy Goebel}, title = {Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-279}, doi = {10.1186/1471-2105-9-279}, timestamp = {Wed, 30 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LinCWWXG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LinDIHBL08, author = {Rongheng Lin and Shuangshuang Dai and Richard D. Irwin and Alexandra N. Heinloth and Gary A. Boorman and Leping Li}, title = {Gene set enrichment analysis for non-monotone association and multiple experimental categories}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-481}, doi = {10.1186/1471-2105-9-481}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LinDIHBL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LinghuSHGXD08, author = {Bolan Linghu and Evan S. Snitkin and Dustin T. Holloway and Adam M. Gustafson and Yu Xia and Charles DeLisi}, title = {High-precision high-coverage functional inference from integrated data sources}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-119}, doi = {10.1186/1471-2105-9-119}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LinghuSHGXD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LingnerM08, author = {Thomas Lingner and Peter Meinicke}, title = {Word correlation matrices for protein sequence analysis and remote homology detection}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-259}, doi = {10.1186/1471-2105-9-259}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LingnerM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuCPR08, author = {Qian Liu and Koby Crammer and Fernando C. N. Pereira and David S. Roos}, title = {Reranking candidate gene models with cross-species comparison for improved gene prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-433}, doi = {10.1186/1471-2105-9-433}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuCPR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuGL08, author = {Dawei Liu and Debashis Ghosh and Xihong Lin}, title = {Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-292}, doi = {10.1186/1471-2105-9-292}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuGL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuGTJJ08, author = {Zhenqiu Liu and Ronald B. Gartenhaus and Ming Tan and Feng Jiang and Xiaoli Jiao}, title = {Gene and pathway identification with \emph{L}\({}_{\mbox{\emph{p }}}\)penalized Bayesian logistic regression}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-412}, doi = {10.1186/1471-2105-9-412}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuGTJJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuWLDW08, author = {Bin Liu and Xiaolong Wang and Lei Lin and Qiwen Dong and Xuan Wang}, title = {A discriminative method for protein remote homology detection and fold recognition combining Top-\emph{n}-grams and latent semantic analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-510}, doi = {10.1186/1471-2105-9-510}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuWLDW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuYCBZY08, author = {Qi Liu and Yu Yang and Chun Chen and Jiajun Bu and Yin Zhang and Xiuzi Ye}, title = {RNACompress: Grammar-based compression and informational complexity measurement of {RNA} secondary structure}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-176}, doi = {10.1186/1471-2105-9-176}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuYCBZY08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiuYZZQ08, author = {Xiong Liu and Xueping Yu and Donald J. Zack and Heng Zhu and Jiang Qian}, title = {TiGER: {A} database for tissue-specific gene expression and regulation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-271}, doi = {10.1186/1471-2105-9-271}, timestamp = {Tue, 02 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiuYZZQ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LopesMC08, author = {Fabr{\'{\i}}cio Martins Lopes and David Correa Martins Jr. and Roberto Marcondes Cesar Junior}, title = {Feature selection environment for genomic applications}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-451}, doi = {10.1186/1471-2105-9-451}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LopesMC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LopezBGCM08, author = {Francisco{-}Javier Lopez and Armando Blanco and Fernando Garc{\'{\i}}a{-}Alcalde and Carlos Cano and Antonio Mar{\'{\i}}n}, title = {Fuzzy association rules for biological data analysis: {A} case study on yeast}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-107}, doi = {10.1186/1471-2105-9-107}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LopezBGCM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LuLSDJPJRGSRR08, author = {Ruixiao Lu and Geun{-}Cheol Lee and Michael Shultz and Chris Dardick and Kihong Jung and Jirapa Phetsom and Yi Jia and Robert H. Rice and Zelanna Goldberg and Patrick S. Schnable and Pamela C. Ronald and David M. Rocke}, title = {Assessing probe-specific dye and slide biases in two-color microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-314}, doi = {10.1186/1471-2105-9-314}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LuLSDJPJRGSRR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LukeC08, author = {Brian T. Luke and Jack R. Collins}, title = {Examining the significance of fingerprint-based classifiers}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-545}, doi = {10.1186/1471-2105-9-545}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LukeC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LuoHW08, author = {Weijun Luo and Kurt D. Hankenson and Peter J. Woolf}, title = {Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-467}, doi = {10.1186/1471-2105-9-467}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LuoHW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LutterUGOTLS08, author = {Dominik Lutter and Peter Ugocsai and Margot Grandl and Evelyn Orso and Fabian J. Theis and Elmar Wolfgang Lang and Gerd Schmitz}, title = {Analyzing {M-CSF} dependent monocyte/macrophage differentiation: Expression modes and meta-modes derived from an independent component analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-100}, doi = {10.1186/1471-2105-9-100}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LutterUGOTLS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MaRDGD08, author = {Li Ma and H. Birali Runesha and Daniel Dvorkin and John R. Garbe and Yang Da}, title = {Parallel and serial computing tools for testing single-locus and epistatic {SNP} effects of quantitative traits in genome-wide association studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-315}, doi = {10.1186/1471-2105-9-315}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MaRDGD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MaierLSFGA08, author = {Holger Maier and Christoph Lengger and Bruno Simic and Helmut Fuchs and Val{\'{e}}rie Gailus{-}Durner and Martin Hrab{\'{e}} de Angelis}, title = {MausDB: An open source application for phenotype data and mouse colony management in large-scale mouse phenotyping projects}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-169}, doi = {10.1186/1471-2105-9-169}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MaierLSFGA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MaierWSB08, author = {Donald Maier and Farrell Wymore and Gavin Sherlock and Catherine A. Ball}, title = {The XBabelPhish {MAGE-ML} and {XML} Translator}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-28}, doi = {10.1186/1471-2105-9-28}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MaierWSB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MannWB08, author = {Martin Mann and Sebastian Will and Rolf Backofen}, title = {CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-230}, doi = {10.1186/1471-2105-9-230}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MannWB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ManningJB08, author = {Jonathan R. Manning and Emily R. Jefferson and Geoffrey J. Barton}, title = {The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-51}, doi = {10.1186/1471-2105-9-51}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ManningJB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ManoharanSYP08, author = {Aswath Manoharan and Jeannie A. Stamberger and YuanYuan Yu and Andreas Paepcke}, title = {Optimizations for the EcoPod field identification tool}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-150}, doi = {10.1186/1471-2105-9-150}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ManoharanSYP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MartheyARGGFLGLC08, author = {Sylvain Marthey and Gabriela Aguileta and Fran{\c{c}}ois Rodolphe and Annie Gendrault and Tatiana Giraud and Elisabeth Fournier and Manuela Lopez{-}Villavicencio and Ang{\'{e}}lique Gautier and Marc{-}Henri Lebrun and H{\'{e}}l{\`{e}}ne Chiapello}, title = {{FUNYBASE:} a FUNgal phYlogenomic dataBASE}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-456}, doi = {10.1186/1471-2105-9-456}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MartheyARGGFLGLC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Martin-MagnietteABEMRD08, author = {Marie{-}Laure Martin{-}Magniette and Julie Aubert and Avner Bar{-}Hen and Samira Elftieh and Fr{\'{e}}d{\'{e}}ric Magniette and Jean{-}Pierre Renou and Jean{-}Jacques Daudin}, title = {Normalization for triple-target microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-216}, doi = {10.1186/1471-2105-9-216}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Martin-MagnietteABEMRD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MarttinenBHDMC08, author = {Pekka Marttinen and Adam Baldwin and William P. Hanage and Chris Dowson and Eshwar Mahenthiralingam and Jukka Corander}, title = {Bayesian modeling of recombination events in bacterial populations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-421}, doi = {10.1186/1471-2105-9-421}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MarttinenBHDMC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Mary-HuardAMSD08, author = {Tristan Mary{-}Huard and Julie Aubert and Nadera Mansouri{-}Attia and Olivier Sandra and Jean{-}Jacques Daudin}, title = {Statistical methodology for the analysis of dye-switch microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-98}, doi = {10.1186/1471-2105-9-98}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Mary-HuardAMSD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/McCraeC08, author = {John P. McCrae and Nigel Collier}, title = {Synonym set extraction from the biomedical literature by lexical pattern discovery}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-159}, doi = {10.1186/1471-2105-9-159}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/McCraeC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/McMillanM08, author = {Lisa E. M. McMillan and Andrew C. R. Martin}, title = {Automatically extracting functionally equivalent proteins from SwissProt}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-418}, doi = {10.1186/1471-2105-9-418}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/McMillanM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MechanicLGCH08, author = {Leah E. Mechanic and Brian T. Luke and Julie E. Goodman and Stephen J. Chanock and Curtis C. Harris}, title = {Polymorphism Interaction Analysis {(PIA):} a method for investigating complex gene-gene interactions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-146}, doi = {10.1186/1471-2105-9-146}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MechanicLGCH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeereisK08, author = {Florian Meereis and Michael Kaufmann}, title = {Extension of the {COG} and arCOG databases by amino acid and nucleotide sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-479}, doi = {10.1186/1471-2105-9-479}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MeereisK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MelvinWLN08, author = {Iain Melvin and Jason Weston and Christina S. Leslie and William Stafford Noble}, title = {Combining classifiers for improved classification of proteins from sequence or structure}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-389}, doi = {10.1186/1471-2105-9-389}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MelvinWLN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MengBC08, author = {Da Meng and Shira L. Broschat and Douglas R. Call}, title = {A Java-based tool for the design of classification microarrays}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-328}, doi = {10.1186/1471-2105-9-328}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MengBC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MengML08, author = {Hailong Meng and Edward Lenn Murrelle and Guoya Li}, title = {Identification of a small optimal subset of CpG sites as bio-markers from high-throughput {DNA} methylation profiles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-457}, doi = {10.1186/1471-2105-9-457}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MengML08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MereghettiGPFG08, author = {Paolo Mereghetti and Maria Luisa Ganadu and Elena Papaleo and Piercarlo Fantucci and Luca De Gioia}, title = {Validation of protein models by a neural network approach}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-66}, doi = {10.1186/1471-2105-9-66}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MereghettiGPFG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MerklZ08, author = {Rainer Merkl and Matthias Zwick}, title = {\emph{H2r}: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-151}, doi = {10.1186/1471-2105-9-151}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MerklZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MerschGSH08, author = {Britta Mersch and Alexander Rainer Tassilo Gepperth and S{\'{a}}ndor Suhai and Agnes Hotz{-}Wagenblatt}, title = {Automatic detection of exonic splicing enhancers (ESEs) using SVMs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-369}, doi = {10.1186/1471-2105-9-369}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MerschGSH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeulemanEGBRW08, author = {Wouter Meuleman and Judith Y. M. N. Engwegen and Marie{-}Christine W. Gast and Jos H. Beijnen and Marcel J. T. Reinders and Lodewyk F. A. Wessels}, title = {Comparison of normalisation methods for surface-enhanced laser desorption and ionisation {(SELDI)} time-of-flight {(TOF)} mass spectrometry data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-88}, doi = {10.1186/1471-2105-9-88}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MeulemanEGBRW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeyerLB08, author = {Patrick E. Meyer and Fr{\'{e}}d{\'{e}}ric Lafitte and Gianluca Bontempi}, title = {\emph{minet}: {A} R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-461}, doi = {10.1186/1471-2105-9-461}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MeyerLB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeyerPDOGKPRSWWE08, author = {Folker Meyer and Daniel Paarmann and Mark D'Souza and Robert Olson and Elizabeth M. Glass and Michael Kubal and Tobias Paczian and Alexis A. Rodriguez and Rick Stevens and Andreas Wilke and Jared Wilkening and Robert A. Edwards}, title = {The metagenomics {RAST} server - a public resource for the automatic phylogenetic and functional analysis of metagenomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-386}, doi = {10.1186/1471-2105-9-386}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MeyerPDOGKPRSWWE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MiklosNDH08, author = {Istv{\'{a}}n Mikl{\'{o}}s and {\'{A}}d{\'{a}}m Nov{\'{a}}k and Bal{\'{a}}zs Dombai and Jotun Hein}, title = {How reliably can we predict the reliability of protein structure predictions?}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-137}, doi = {10.1186/1471-2105-9-137}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MiklosNDH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MilenkovicLP08, author = {Tijana Milenkovic and Jason Lai and Natasa Przulj}, title = {GraphCrunch: {A} tool for large network analyses}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-70}, doi = {10.1186/1471-2105-9-70}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MilenkovicLP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MistryP08, author = {Meeta Mistry and Paul Pavlidis}, title = {Gene Ontology term overlap as a measure of gene functional similarity}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-327}, doi = {10.1186/1471-2105-9-327}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MistryP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MoHGDWOL08, author = {Fan Mo and Xu Hong and Feng Gao and Lin Du and Jun Wang and Gilbert S. Omenn and Biaoyang Lin}, title = {A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-537}, doi = {10.1186/1471-2105-9-537}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MoHGDWOL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Momen-RoknabadiSPM08, author = {Amir Momen{-}Roknabadi and Mehdi Sadeghi and Hamid Pezeshk and Sayed{-}Amir Marashi}, title = {Impact of residue accessible surface area on the prediction of protein secondary structures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-357}, doi = {10.1186/1471-2105-9-357}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Momen-RoknabadiSPM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MooreKIFM08, author = {Jonathan D. Moore and Shelagh P. Kell and Jose M. Iriondo and Brian V. Ford{-}Lloyd and Nigel Maxted}, title = {{CWRML:} representing crop wild relative conservation and use data in {XML}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-116}, doi = {10.1186/1471-2105-9-116}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MooreKIFM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MoreauFPNNVLGM08, author = {Violaine Moreau and C{\'{e}}cile Fleury and Dominique Piquer and Christophe Nguyen and Nicolas Novali and Sylvie Villard and Daniel Laune and Claude Granier and Franck Molina}, title = {{PEPOP:} Computational design of immunogenic peptides}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-71}, doi = {10.1186/1471-2105-9-71}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MoreauFPNNVLGM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MorettiLGBDKPM08, author = {Stefano Moretti and Danitsja van Leeuwen and Hans Gmuender and Stefano Bonassi and Joost van Delft and Jos Kleinjans and Fioravante Patrone and Domenico Franco Merlo}, title = {Combining Shapley value and statistics to the analysis of gene expression data in children exposed to air pollution}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-361}, doi = {10.1186/1471-2105-9-361}, timestamp = {Tue, 04 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MorettiLGBDKPM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MoscaBS08, author = {Roberto Mosca and Barbara Brannetti and Thomas R. Schneider}, title = {Alignment of protein structures in the presence of domain motions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-352}, doi = {10.1186/1471-2105-9-352}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MoscaBS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MullerCL08, author = {Hans{-}Georg M{\"{u}}ller and Jeng{-}Min Chiou and Xiaoyan Leng}, title = {Inferring gene expression dynamics via functional regression analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-60}, doi = {10.1186/1471-2105-9-60}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MullerCL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MyslyukDHHHZMU08, author = {Inna Myslyuk and Tirza Doniger and Yair Horesh and Avraham Hury and Ran Hoffer and Yaara Ziporen and Shulamit Michaeli and Ron Unger}, title = {Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding {RNA} in trypanosomatid genomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-471}, doi = {10.1186/1471-2105-9-471}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MyslyukDHHHZMU08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NagarajanRSCF08, author = {Sridevi Nagarajan and Willem Rens and James Stalker and Tony Cox and Malcolm A. Ferguson{-}Smith}, title = {Chromhome: {A} rich internet application for accessing comparative chromosome homology maps}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-168}, doi = {10.1186/1471-2105-9-168}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NagarajanRSCF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NagyHFTKBP08, author = {Alinda Nagy and H{\'{e}}di Hegyi and Krisztina Farkas and Hedvig Tordai and Evelin Kozma and L{\'{a}}szl{\'{o}} B{\'{a}}nyai and L{\'{a}}szl{\'{o}} Patthy}, title = {Identification and correction of abnormal, incomplete and mispredicted proteins in public databases}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-353}, doi = {10.1186/1471-2105-9-353}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/NagyHFTKBP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NaiserKMMO08, author = {Thomas Naiser and Jona Kayser and Timo Mai and Wolfgang Michel and Albrecht Ott}, title = {Position dependent mismatch discrimination on {DNA} microarrays - experiments and model}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-509}, doi = {10.1186/1471-2105-9-509}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NaiserKMMO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NajafabadiTC08, author = {Hamed Shateri Najafabadi and Noorossadat Torabi and Mahmood Chamankhah}, title = {Designing multiple degenerate primers via consecutive pairwise alignments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-55}, doi = {10.1186/1471-2105-9-55}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NajafabadiTC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NanniL08, author = {Loris Nanni and Alessandra Lumini}, title = {A genetic approach for building different alphabets for peptide and protein classification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-45}, doi = {10.1186/1471-2105-9-45}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NanniL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NatowiczIHCGYCAPR08, author = {Ren{\'{e}} Natowicz and Roberto Incitti and Euler Guimar{\~{a}}es Horta and Beno{\^{\i}}t Charles and Philippe Guinot and Kai Yan and Charles Coutant and Fabrice Andr{\'{e}} and Lajos Pusztai and Roman Rouzier}, title = {Prediction of the outcome of preoperative chemotherapy in breast cancer using {DNA} probes that provide information on both complete and incomplete responses}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-149}, doi = {10.1186/1471-2105-9-149}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NatowiczIHCGYCAPR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NellakerUTK08, author = {Christoffer Nell{\aa}ker and Fredrik Uhrzander and Joanna Tyrcha and H{\aa}kan Karlsson}, title = {Mixture models for analysis of melting temperature data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-370}, doi = {10.1186/1471-2105-9-370}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NellakerUTK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NiLSZ08, author = {Terri T. Ni and William J. Lemon and Yu Shyr and Tao P. Zhong}, title = {Use of normalization methods for analysis of microarrays containing a high degree of gene effects}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-505}, doi = {10.1186/1471-2105-9-505}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NiLSZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Nicodemus08, author = {Kristin K. Nicodemus}, title = {catmap: Case-control And {TDT} Meta-Analysis Package}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-130}, doi = {10.1186/1471-2105-9-130}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Nicodemus08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NielsenM08, author = {Jesper Buus Nielsen and Thomas Mailund}, title = {SNPFile - {A} software library and file format for large scale association mapping and population genetics studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-526}, doi = {10.1186/1471-2105-9-526}, timestamp = {Thu, 11 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NielsenM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NiidaSITAZA08, author = {Atsushi Niida and Andrew D. Smith and Seiya Imoto and Shuichi Tsutsumi and Hiroyuki Aburatani and Michael Q. Zhang and Tetsu Akiyama}, title = {Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-404}, doi = {10.1186/1471-2105-9-404}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NiidaSITAZA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NikamanonPCKG08, author = {Pornpat Nikamanon and Elroy Pun and Wayne Chou and Marek D. Koter and Paul D. Gershon}, title = {"TOF2H": {A} precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an {LC-MALDI} approach, covering the data pipeline from spectral acquisition to {HDX} rate analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-387}, doi = {10.1186/1471-2105-9-387}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NikamanonPCKG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NixCB08, author = {David A. Nix and Samir J. Courdy and Kenneth M. Boucher}, title = {Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-523}, doi = {10.1186/1471-2105-9-523}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NixCB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NoirotGSG08, author = {C{\'{e}}line Noirot and Christine Gaspin and Thomas Schiex and J{\'{e}}r{\^{o}}me Gouzy}, title = {LeARN: a platform for detecting, clustering and annotating non-coding RNAs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-21}, doi = {10.1186/1471-2105-9-21}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/NoirotGSG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NowakP08, author = {Robert M. Nowak and Rafal Ploski}, title = {NullHap - a versatile application to estimate haplotype frequencies from unphased genotypes in the presence of null alleles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-330}, doi = {10.1186/1471-2105-9-330}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NowakP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NumataYNSIM08, author = {Kazuyuki Numata and Ryo Yoshida and Masao Nagasaki and Ayumu Saito and Seiya Imoto and Satoru Miyano}, title = {ExonMiner: Web service for analysis of GeneChip Exon array data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-494}, doi = {10.1186/1471-2105-9-494}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NumataYNSIM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ONeillGSJJH08, author = {Kieran O'Neill and Alexander Garc{\'{\i}}a Castro and Anita Schwegmann and Rafael C. Jim{\'{e}}nez and Dan Jacobson and Henning Hermjakob}, title = {OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-437}, doi = {10.1186/1471-2105-9-437}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ONeillGSJJH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OhtsuboINT08, author = {Yoshiyuki Ohtsubo and Wakako Ikeda{-}Ohtsubo and Yuji Nagata and Masataka Tsuda}, title = {GenomeMatcher: {A} graphical user interface for {DNA} sequence comparison}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-376}, doi = {10.1186/1471-2105-9-376}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OhtsuboINT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OrtutayV08, author = {Csaba P. Ortutay and Mauno Vihinen}, title = {PseudoGeneQuest - Service for identification of different pseudogene types in the human genome}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-299}, doi = {10.1186/1471-2105-9-299}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OrtutayV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OscamouMYHLK08, author = {Maribeth Oscamou and Daniel McDonald and Von Bing Yap and Gavin A. Huttley and Manuel E. Lladser and Rob Knight}, title = {Comparison of methods for estimating the nucleotide substitution matrix}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-511}, doi = {10.1186/1471-2105-9-511}, timestamp = {Sun, 28 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/OscamouMYHLK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OtiRHB08, author = {Martin Oti and Jeroen van Reeuwijk and Martijn A. Huynen and Han G. Brunner}, title = {Conserved co-expression for candidate disease gene prioritization}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-208}, doi = {10.1186/1471-2105-9-208}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OtiRHB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OttoGAMD08, author = {Thomas D. Otto and Leonardo H. F. Gomes and Marcelo Alves{-}Ferreira and Antonio Bas{\'{\i}}lio de Miranda and Wim M. Degrave}, title = {ReRep: Computational detection of repetitive sequences in genome survey sequences {(GSS)}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-366}, doi = {10.1186/1471-2105-9-366}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/OttoGAMD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OttoGDM08, author = {Thomas D. Otto and Ana Carolina R. Guimar{\~{a}}es and Wim M. Degrave and Antonio Bas{\'{\i}}lio de Miranda}, title = {AnEnPi: identification and annotation of analogous enzymes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-544}, doi = {10.1186/1471-2105-9-544}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/OttoGDM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PaarPBRGP08, author = {Vladimir Paar and Nenad Pavin and Ivan Basar and Marija Rosandic and Matko Gluncic and Nils Paar}, title = {Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-466}, doi = {10.1186/1471-2105-9-466}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PaarPBRGP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PahleGDK08, author = {J{\"{u}}rgen Pahle and Anne K. Green and C. Jane Dixon and Ursula Kummer}, title = {Information transfer in signaling pathways: {A} study using coupled simulated and experimental data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-139}, doi = {10.1186/1471-2105-9-139}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PahleGDK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PaladuguZRR08, author = {Sri R. Paladugu and Shan Zhao and Animesh Ray and Alpan Raval}, title = {Mining protein networks for synthetic genetic interactions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-426}, doi = {10.1186/1471-2105-9-426}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PaladuguZRR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PanditS08, author = {Shashi Bhushan Pandit and Jeffrey Skolnick}, title = {Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-531}, doi = {10.1186/1471-2105-9-531}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PanditS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PangZ08, author = {Herbert Pang and Hongyu Zhao}, title = {Building pathway clusters from Random Forests classification using class votes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-87}, doi = {10.1186/1471-2105-9-87}, timestamp = {Thu, 28 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PangZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ParodiPM08, author = {Stefano Parodi and Vito Pistoia and Marco Muselli}, title = {Not proper {ROC} curves as new tool for the analysis of differentially expressed genes in microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-410}, doi = {10.1186/1471-2105-9-410}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ParodiPM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ParraviciniRAF08, author = {Chiara Parravicini and Graziella Ranghino and Maria P. Abbracchio and Piercarlo Fantucci}, title = {{GPR17:} Molecular modeling and dynamics studies of the 3-D structure and purinergic ligand binding features in comparison with {P2Y} receptors}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-263}, doi = {10.1186/1471-2105-9-263}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ParraviciniRAF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PawlickiBD08, author = {Sandrine Pawlicki and Antony Le B{\'{e}}chec and Christian Delamarche}, title = {AMYPdb: {A} database dedicated to amyloid precursor proteins}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-273}, doi = {10.1186/1471-2105-9-273}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PawlickiBD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PawlowskiGMB08, author = {Marcin Pawlowski and Michal J. Gajda and Ryszard Matlak and Janusz M. Bujnicki}, title = {MetaMQAP: {A} meta-server for the quality assessment of protein models}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-403}, doi = {10.1186/1471-2105-9-403}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PawlowskiGMB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Pearson08, author = {Richard D. Pearson}, title = {A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-164}, doi = {10.1186/1471-2105-9-164}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Pearson08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PeltaGV08, author = {David A. Pelta and Juan Ram{\'{o}}n Gonz{\'{a}}lez and J. Marcos Moreno{-}Vega}, title = {A simple and fast heuristic for protein structure comparison}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-161}, doi = {10.1186/1471-2105-9-161}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PeltaGV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PelzKBS08, author = {Carl R. Pelz and Molly Kulesz{-}Martin and Grover Bagby and Rosalie C. Sears}, title = {Global rank-invariant set normalization {(GRSN)} to reduce systematic distortions in microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-520}, doi = {10.1186/1471-2105-9-520}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PelzKBS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PenchevaLPVM08, author = {Tania Pencheva and David Lagorce and Ilza Pajeva and Bruno O. Villoutreix and Maria A. Miteva}, title = {{AMMOS:} Automated Molecular Mechanics Optimization tool for \emph{in silico }Screening}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-438}, doi = {10.1186/1471-2105-9-438}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PenchevaLPVM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PencoBPMG08, author = {Silvana Penco and Paolo Massimo Buscema and Maria Cristina Patrosso and Alessandro Marocchi and Enzo Grossi}, title = {New application of intelligent agents in sporadic amyotrophic lateral sclerosis identifies unexpected specific genetic background}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-254}, doi = {10.1186/1471-2105-9-254}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PencoBPMG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PeresMSGM08, author = {Sabine P{\'{e}}r{\`{e}}s and Laurence Molina and Nicolas Salvetat and Claude Granier and Franck Molina}, title = {A new method for 2D gel spot alignment: application to the analysis of large sample sets in clinical proteomics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-460}, doi = {10.1186/1471-2105-9-460}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PeresMSGM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PerisLC08, author = {Piedachu Peris and Dami{\'{a}}n L{\'{o}}pez and Marcelino Campos}, title = {IgTM: An algorithm to predict transmembrane domains and topology in proteins}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-367}, doi = {10.1186/1471-2105-9-367}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PerisLC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PerrodouCPGT08, author = {Emmanuel Perrodou and Claudia Chica and Olivier Poch and Toby J. Gibson and Julie Dawn Thompson}, title = {A new protein linear motif benchmark for multiple sequence alignment software}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-213}, doi = {10.1186/1471-2105-9-213}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PerrodouCPGT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PeterlongoNLNKG08, author = {Pierre Peterlongo and Laurent No{\'{e}} and Dominique Lavenier and Van Hoa Nguyen and Gregory Kucherov and Mathieu Giraud}, title = {Optimal neighborhood indexing for protein similarity search}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-534}, doi = {10.1186/1471-2105-9-534}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PeterlongoNLNKG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PetoKHJ08, author = {Myron Peto and Andrzej Kloczkowski and Vasant G. Honavar and Robert L. Jernigan}, title = {Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-487}, doi = {10.1186/1471-2105-9-487}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PetoKHJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PetterssonMBC08, author = {Fredrik Pettersson and Andrew P. Morris and Michael R. Barnes and Lon R. Cardon}, title = {Goldsurfer2 (Gs2): {A} comprehensive tool for the analysis and visualization of genome wide association studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-138}, doi = {10.1186/1471-2105-9-138}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PetterssonMBC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PierleoniMC08, author = {Andrea Pierleoni and Pier Luigi Martelli and Rita Casadio}, title = {PredGPI: a GPI-anchor predictor}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-392}, doi = {10.1186/1471-2105-9-392}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PierleoniMC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PirovanoFH08, author = {Walter Pirovano and K. Anton Feenstra and Jaap Heringa}, title = {The meaning of alignment: lessons from structural diversity}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-556}, doi = {10.1186/1471-2105-9-556}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PirovanoFH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PodellGA08, author = {Sheila Podell and Terry Gaasterland and Eric E. Allen}, title = {A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the \emph{DarkHorse }algorithm}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-419}, doi = {10.1186/1471-2105-9-419}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PodellGA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PollockA08, author = {Richard F. Pollock and Boris Adryan}, title = {BioSAVE: Display of scored annotation within a sequence context}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-157}, doi = {10.1186/1471-2105-9-157}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PollockA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PommerenckeSDTG08, author = {Thora Pommerencke and Thorsten Steinberg and Hartmut Dickhaus and Pascal Tomakidi and Niels Grabe}, title = {Nuclear staining and relative distance for quantifying epidermal differentiation in biomarker expression profiling}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-473}, doi = {10.1186/1471-2105-9-473}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PommerenckeSDTG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PonomarenkoBLFBSP08, author = {Julia V. Ponomarenko and Huynh{-}Hoa Bui and Wei Li and Nicholas Fusseder and Philip E. Bourne and Alessandro Sette and Bj{\"{o}}rn Peters}, title = {ElliPro: a new structure-based tool for the prediction of antibody epitopes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-514}, doi = {10.1186/1471-2105-9-514}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PonomarenkoBLFBSP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PotapovGW08, author = {Anatolij Potapov and Bj{\"{o}}rn Goemann and Edgar Wingender}, title = {The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-227}, doi = {10.1186/1471-2105-9-227}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PotapovGW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PotterYHL08, author = {Dustin P. Potter and Pearlly Yan and Tim Hui{-}Ming Huang and Shili Lin}, title = {Probe signal correction for differential methylation hybridization experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-453}, doi = {10.1186/1471-2105-9-453}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PotterYHL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PoulterRAS08, author = {Graham L. Poulter and Daniel L. Rubin and Russ B. Altman and Cathal Seoighe}, title = {MScanner: a classifier for retrieving Medline citations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-108}, doi = {10.1186/1471-2105-9-108}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PoulterRAS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PozoPV08, author = {Angela del Pozo and Florencio Pazos and Alfonso Valencia}, title = {Defining functional distances over Gene Ontology}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-50}, doi = {10.1186/1471-2105-9-50}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PozoPV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PressonSPPWAP08, author = {Angela P. Presson and Eric M. Sobel and Paivi Pajukanta and Christopher Plaisier and Daniel E. Weeks and Karolina A. {\AA}berg and Jeanette C. Papp}, title = {Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-317}, doi = {10.1186/1471-2105-9-317}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PressonSPPWAP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PuigboBG08, author = {Pere Puigb{\`{o}} and Ignacio G. Bravo and Santiago Garcia{-}Vallv{\'{e}}}, title = {{E-CAI:} a novel server to estimate an expected value of Codon Adaptation Index (eCAI)}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-65}, doi = {10.1186/1471-2105-9-65}, timestamp = {Thu, 12 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PuigboBG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RantalainenCELNHT08, author = {Mattias Rantalainen and Olivier Cloarec and Timothy M. D. Ebbels and Torbj{\"{o}}rn Lundstedt and Jeremy K. Nicholson and Elaine Holmes and Johan Trygg}, title = {Piecewise multivariate modelling of sequential metabolic profiling data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-105}, doi = {10.1186/1471-2105-9-105}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RantalainenCELNHT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RantanenRJZMU08, author = {Ari Rantanen and Juho Rousu and Paula Jouhten and Nicola Zamboni and Hannu Maaheimo and Esko Ukkonen}, title = {An analytic and systematic framework for estimating metabolic flux ratios from \({}^{\mbox{13}}\)\emph{C }tracer experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-266}, doi = {10.1186/1471-2105-9-266}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RantanenRJZMU08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RanzingerHWL08, author = {Ren{\'{e}} Ranzinger and Stephan Herget and Thomas Wetter and Claus{-}Wilhelm von der Lieth}, title = {\emph{GlycomeDB }- integration of open-access carbohydrate structure databases}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-384}, doi = {10.1186/1471-2105-9-384}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RanzingerHWL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RazickMD08, author = {Sabry Razick and George Magklaras and Ian M. Donaldson}, title = {iRefIndex: {A} consolidated protein interaction database with provenance}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-405}, doi = {10.1186/1471-2105-9-405}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RazickMD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ReddySOS08, author = {Chilamakuri Chandra Sekhar Reddy and Khader Shameer and Bernard O. Offmann and Ramanathan Sowdhamini}, title = {{PURE:} {A} webserver for the prediction of domains in unassigned regions in proteins}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-281}, doi = {10.1186/1471-2105-9-281}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ReddySOS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ReidF08, author = {Robert W. Reid and Anthony A. Fodor}, title = {Determining gene expression on a single pair of microarrays}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-489}, doi = {10.1186/1471-2105-9-489}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ReidF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RemeHVVPPGK08, author = {Thierry R{\`{e}}me and Dirk Hose and John De Vos and Aur{\'{e}}lien Vassal and Pierre{-}Olivier Poulain and V{\'{e}}ronique Pantesco and Hartmut Goldschmidt and Bernard Klein}, title = {A new method for class prediction based on signed-rank algorithms applied to Affymetrix\({}^{\mbox{{\textregistered} }}\)microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-16}, doi = {10.1186/1471-2105-9-16}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RemeHVVPPGK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RenardKSSH08, author = {Bernhard Y. Renard and Marc Kirchner and Hanno Steen and Judith A. J. Steen and Fred A. Hamprecht}, title = {{NITPICK:} peak identification for mass spectrometry data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-355}, doi = {10.1186/1471-2105-9-355}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RenardKSSH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RepsysMV08, author = {Valdemaras Repsys and Mindaugas Margelevicius and Ceslovas Venclovas}, title = {Re-searcher: a system for recurrent detection of homologous protein sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-296}, doi = {10.1186/1471-2105-9-296}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RepsysMV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ReyesFT08, author = {Josephine F. Reyes and Andrew R. Francis and Mark M. Tanaka}, title = {Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-496}, doi = {10.1186/1471-2105-9-496}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ReyesFT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RichardsHOOJ08, author = {Alexander L. Richards and Peter Holmans and Michael C. O'Donovan and Michael J. Owen and Lesley Jones}, title = {A comparison of four clustering methods for brain expression microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-490}, doi = {10.1186/1471-2105-9-490}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RichardsHOOJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RichterLKKDPG08, author = {Michael Richter and Thierry Lombardot and Ivaylo Kostadinov and Renzo Kottmann and Melissa Beth Duhaime and J{\"{o}}rg Peplies and Frank Oliver Gl{\"{o}}ckner}, title = {JCoast - {A} biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-177}, doi = {10.1186/1471-2105-9-177}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RichterLKKDPG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RocaAA08, author = {Alberto I. Roca and Albert E. Almada and Aaron C. Abajian}, title = {ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-554}, doi = {10.1186/1471-2105-9-554}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RocaAA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RochaMMPFNPR08, author = {Miguel Rocha and Paulo Maia and Rui Mendes and Jos{\'{e}} P. Pinto and Eug{\'{e}}nio C. Ferreira and Jens Nielsen and Kiran Raosaheb Patil and Isabel Rocha}, title = {Natural computation meta-heuristics for the in silico optimization of microbial strains}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-499}, doi = {10.1186/1471-2105-9-499}, timestamp = {Wed, 12 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RochaMMPFNPR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RocheGB08, author = {Benjamin Roche and Jean{-}Fran{\c{c}}ois Gu{\'{e}}gan and Fran{\c{c}}ois Bousquet}, title = {Multi-agent systems in epidemiology: a first step for computational biology in the study of vector-borne disease transmission}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-435}, doi = {10.1186/1471-2105-9-435}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RocheGB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RoshanCL08, author = {Usman Roshan and Satish Chikkagoudar and Dennis R. Livesay}, title = {Searching for evolutionary distant {RNA} homologs within genomic sequences using partition function posterior probabilities}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-61}, doi = {10.1186/1471-2105-9-61}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RoshanCL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RoszikSV08, author = {J{\'{a}}nos Roszik and J{\'{a}}nos Sz{\"{o}}ll{\"{o}}si and Gy{\"{o}}rgy Vereb}, title = {AccPbFRET: An ImageJ plugin for semi-automatic, fully corrected analysis of acceptor photobleaching {FRET} images}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-346}, doi = {10.1186/1471-2105-9-346}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RoszikSV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RothGD08, author = {Alexander C. J. Roth and Gaston H. Gonnet and Christophe Dessimoz}, title = {Algorithm of {OMA} for large-scale orthology inference}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-518}, doi = {10.1186/1471-2105-9-518}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RothGD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RougemontAIFXN08, author = {Jacques Rougemont and Arnaud Amzallag and Christian Iseli and Laurent Farinelli and Ioannis Xenarios and Felix Naef}, title = {Probabilistic base calling of Solexa sequencing data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-431}, doi = {10.1186/1471-2105-9-431}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RougemontAIFXN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RoxasL08, author = {Bryan A. P. Roxas and Qingbo Li}, title = {Significance analysis of microarray for relative quantitation of {LC/MS} data in proteomics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-187}, doi = {10.1186/1471-2105-9-187}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RoxasL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RushtonBLBCT08, author = {Paul J. Rushton and Marta T. Bokowiec and Thomas W. Laudeman and Jennifer F. Brannock and Xianfeng Chen and Michael P. Timko}, title = {{TOBFAC:} the database of tobacco transcription factors}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-53}, doi = {10.1186/1471-2105-9-53}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RushtonBLBCT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RussellOS08, author = {David J. Russell and Hasan H. Otu and Khalid Sayood}, title = {Grammar-based distance in progressive multiple sequence alignment}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-306}, doi = {10.1186/1471-2105-9-306}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RussellOS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RyanZCCKLW08, author = {Michael C. Ryan and Barry Zeeberg and Natasha J. Caplen and James A. Cleland and Ari B. Kahn and Hongfang Liu and John N. Weinstein}, title = {SpliceCenter: {A} suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-313}, doi = {10.1186/1471-2105-9-313}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RyanZCCKLW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SalesTK08, author = {Ana Paula Sales and Georgia D. Tomaras and Thomas B. Kepler}, title = {Improving peptide-MHC class {I} binding prediction for unbalanced datasets}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-385}, doi = {10.1186/1471-2105-9-385}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SalesTK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SamTGGLM08, author = {Vichetra Sam and Chin{-}Hsien Tai and Jean Garnier and Jean{-}Fran{\c{c}}ois Gibrat and Byungkook Lee and Peter J. Munson}, title = {Towards an automatic classification of protein structural domains based on structural similarity}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-74}, doi = {10.1186/1471-2105-9-74}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SamTGGLM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Sanchez-VilledaSFGYM08, author = {Hector Sanchez{-}Villeda and Steven G. Schroeder and Sherry Flint{-}Garcia and Katherine E. Guill and Masanori Yamasaki and Michael D. McMullen}, title = {DNAAlignEditor: {DNA} alignment editor tool}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-154}, doi = {10.1186/1471-2105-9-154}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Sanchez-VilledaSFGYM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SandveAD08, author = {Geir Kjetil Sandve and Osman Abul and Finn Drabl{\o}s}, title = {Compo: composite motif discovery using discrete models}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-527}, doi = {10.1186/1471-2105-9-527}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SandveAD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SantamariaTQ08, author = {Rodrigo Santamar{\'{\i}}a and Roberto Ther{\'{o}}n and Luis Quintales}, title = {A visual analytics approach for understanding biclustering results from microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-247}, doi = {10.1186/1471-2105-9-247}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SantamariaTQ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SarkarECLD08, author = {Indra Neil Sarkar and Mary G. Egan and Gloria M. Coruzzi and Ernest K. Lee and Robert DeSalle}, title = {Automated simultaneous analysis phylogenetics {(ASAP):} an enabling tool for phlyogenomics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-103}, doi = {10.1186/1471-2105-9-103}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SarkarECLD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SatoMAS08, author = {Kengo Sato and Toutai Mituyama and Kiyoshi Asai and Yasubumi Sakakibara}, title = {Directed acyclic graph kernels for structural {RNA} analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-318}, doi = {10.1186/1471-2105-9-318}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SatoMAS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SatyaZKR08, author = {Ravi Vijaya Satya and Nela Zavaljevski and Kamal Kumar and Jaques Reifman}, title = {A high-throughput pipeline for designing microarray-based pathogen diagnostic assays}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-185}, doi = {10.1186/1471-2105-9-185}, timestamp = {Fri, 22 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SatyaZKR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SaundersBHKK08, author = {Neil F. W. Saunders and Ross I. Brinkworth and Thomas Huber and Bruce E. Kemp and Bostjan Kobe}, title = {Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-245}, doi = {10.1186/1471-2105-9-245}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SaundersBHKK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SautonLVM08, author = {Nicolas Sauton and David Lagorce and Bruno O. Villoutreix and Maria A. Miteva}, title = {{MS-DOCK:} Accurate multiple conformation generator and rigid docking protocol for multi-step virtual ligand screening}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-184}, doi = {10.1186/1471-2105-9-184}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SautonLVM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchlossH08, author = {Patrick D. Schloss and Jo Handelsman}, title = {A statistical toolbox for metagenomics: assessing functional diversity in microbial communities}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-34}, doi = {10.1186/1471-2105-9-34}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SchlossH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchmidB08, author = {Ralf Schmid and Mark L. Blaxter}, title = {annot8r: GO, {EC} and {KEGG} annotation of {EST} datasets}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-180}, doi = {10.1186/1471-2105-9-180}, timestamp = {Fri, 17 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SchmidB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchmidH08, author = {Matthias Schmid and Torsten Hothorn}, title = {Flexible boosting of accelerated failure time models}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-269}, doi = {10.1186/1471-2105-9-269}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SchmidH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchranzYEKH08, author = {Harold W. Schranz and Von Bing Yap and Simon Easteal and Rob Knight and Gavin A. Huttley}, title = {Pathological rate matrices: from primates to pathogens}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-550}, doi = {10.1186/1471-2105-9-550}, timestamp = {Sun, 28 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SchranzYEKH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchreiberSBF08, author = {Andreas W. Schreiber and Neil J. Shirley and Rachel A. Burton and Geoffrey B. Fincher}, title = {Combining transcriptional datasets using the generalized singular value decomposition}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-335}, doi = {10.1186/1471-2105-9-335}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SchreiberSBF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Schulz-TrieglaffPGKR08, author = {Ole Schulz{-}Trieglaff and Nico Pfeifer and Clemens Gr{\"{o}}pl and Oliver Kohlbacher and Knut Reinert}, title = {LC-MSsim - a simulation software for liquid chromatography mass spectrometry data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-423}, doi = {10.1186/1471-2105-9-423}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Schulz-TrieglaffPGKR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchwenderI08, author = {Holger Schwender and Katja Ickstadt}, title = {Empirical Bayes analysis of single nucleotide polymorphisms}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-144}, doi = {10.1186/1471-2105-9-144}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SchwenderI08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ScornavaccaBLDR08, author = {C{\'{e}}line Scornavacca and Vincent Berry and Vincent Lefort and Emmanuel J. P. Douzery and Vincent Ranwez}, title = {PhySIC{\_}IST: cleaning source trees to infer more informative supertrees}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-413}, doi = {10.1186/1471-2105-9-413}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ScornavaccaBLDR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SheariKKASPEM08, author = {Armita Sheari and Mehdi Kargar and Ali Katanforoush and Shahriar Arab and Mehdi Sadeghi and Hamid Pezeshk and Changiz Eslahchi and Sayed{-}Amir Marashi}, title = {A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-274}, doi = {10.1186/1471-2105-9-274}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SheariKKASPEM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SheehanQGD08, author = {Brendan Sheehan and Aaron J. Quigley and Benoit Gaudin and Simon Dobson}, title = {A relation based measure of semantic similarity for Gene Ontology annotations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-468}, doi = {10.1186/1471-2105-9-468}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SheehanQGD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShenLW08, author = {Li Shen and Jie Liu and Wei Wang}, title = {GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-395}, doi = {10.1186/1471-2105-9-395}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ShenLW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShiZAWL08, author = {Yi Shi and Jianjun Zhou and David Arndt and David S. Wishart and Guohui Lin}, title = {Protein contact order prediction from primary sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-255}, doi = {10.1186/1471-2105-9-255}, timestamp = {Thu, 12 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ShiZAWL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShiehCYHWL08, author = {Grace S. Shieh and Chung{-}Ming Chen and Ching{-}Yun Yu and Juiling Huang and Woei{-}Fuh Wang and Yi{-}Chen Lo}, title = {Inferring transcriptional compensation interactions in yeast via stepwise structure equation modeling}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-134}, doi = {10.1186/1471-2105-9-134}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ShiehCYHWL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ShuBZW08, author = {Wenjie Shu and Xiaochen Bo and Zhiqiang Zheng and Shengqi Wang}, title = {A novel representation of {RNA} secondary structure based on element-contact graphs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-188}, doi = {10.1186/1471-2105-9-188}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ShuBZW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SinhaHPGPB08, author = {Rileen Sinha and Michael Hiller and Rainer Pudimat and Ulrike Gausmann and Matthias Platzer and Rolf Backofen}, title = {Improved identification of conserved cassette exons using Bayesian networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-477}, doi = {10.1186/1471-2105-9-477}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SinhaHPGPB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SiposSAP08, author = {Botond Sipos and K{\'{a}}lm{\'{a}}n Somogyi and Istv{\'{a}}n And{\'{o}} and Zsolt P{\'{e}}nzes}, title = {t2prhd: a tool to study the patterns of repeat evolution}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-27}, doi = {10.1186/1471-2105-9-27}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SiposSAP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SivaganesanSVHS08, author = {Mano Sivaganesan and Shawn Seifring and Manju Varma and Richard A. Haugland and Orin C. Shanks}, title = {A Bayesian method for calculating real-time quantitative {PCR} calibration curves using absolute plasmid {DNA} standards}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-120}, doi = {10.1186/1471-2105-9-120}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SivaganesanSVHS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SlamaFL08, author = {Patrick Slama and Ioannis Filippis and Michael Lappe}, title = {Detection of protein catalytic residues at high precision using local network properties}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-517}, doi = {10.1186/1471-2105-9-517}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SlamaFL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SlawskiDB08, author = {Martin Slawski and Martin Daumer and Anne{-}Laure Boulesteix}, title = {{CMA} - a comprehensive Bioconductor package for supervised classification with high dimensional data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-439}, doi = {10.1186/1471-2105-9-439}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SlawskiDB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SmithBLPBL08, author = {Robin P. Smith and William J. Buchser and Marcus B. Lemmon and Jose R. Pardinas and John L. Bixby and Vance P. Lemmon}, title = {{EST} Express: PHP/MySQL based automated annotation of ESTs from expression libraries}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-186}, doi = {10.1186/1471-2105-9-186}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SmithBLPBL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SmithBP08, author = {Martin A. Smith and Mathieu Blanchette and Barbara Papadopoulou}, title = {Improving the prediction of mRNA extremities in the parasitic protozoan \emph{Leishmania}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-158}, doi = {10.1186/1471-2105-9-158}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SmithBP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SmithC08, author = {Timothy D. Smith and Richard G. H. Cotton}, title = {VariVis: a visualisation toolkit for variation databases}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-206}, doi = {10.1186/1471-2105-9-206}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SmithC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SmithSSLRGL08, author = {David D. Smith and P{\aa}l S{\ae}trom and Ola R. Sn{\o}ve Jr. and Cathryn Lundberg and Guillermo E. Rivas and Carlotta Glackin and Garrett P. Larson}, title = {Meta-analysis of breast cancer microarray studies in conjunction with conserved \emph{cis}-elements suggest patterns for coordinate regulation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-63}, doi = {10.1186/1471-2105-9-63}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SmithSSLRGL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SmithXZ08, author = {Andrew D. Smith and Zhenyu Xuan and Michael Q. Zhang}, title = {Using quality scores and longer reads improves accuracy of Solexa read mapping}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-128}, doi = {10.1186/1471-2105-9-128}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SmithXZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SohGTDATS08, author = {Jung Soh and Paul M. K. Gordon and Morgan L. Taschuk and Anguo Dong and Andrew C. Ah{-}Seng and Andrei L. Turinsky and Christoph W. Sensen}, title = {Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-450}, doi = {10.1186/1471-2105-9-450}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SohGTDATS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SohnCKW08, author = {Sunghwan Sohn and Donald C. Comeau and Won Kim and W. John Wilbur}, title = {Abbreviation definition identification based on automatic precision estimates}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-402}, doi = {10.1186/1471-2105-9-402}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SohnCKW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SongB08, author = {Sarah Song and Michael A. Black}, title = {Microarray-based gene set analysis: a comparison of current methods}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-502}, doi = {10.1186/1471-2105-9-502}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SongB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SoutoCALS08, author = {Marc{\'{\i}}lio Carlos Pereira de Souto and Ivan G. Costa and Daniel S. A. de Araujo and Teresa Bernarda Ludermir and Alexander Schliep}, title = {Clustering cancer gene expression data: a comparative study}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-497}, doi = {10.1186/1471-2105-9-497}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SoutoCALS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SparksB08, author = {Michael E. Sparks and Volker Brendel}, title = {MetWAMer: eukaryotic translation initiation site prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-381}, doi = {10.1186/1471-2105-9-381}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SparksB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SpiessFR08, author = {Andrej{-}Nikolai Spiess and Caroline Feig and Christian Ritz}, title = {Highly accurate sigmoidal fitting of real-time {PCR} data by introducing a parameter for asymmetry}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-221}, doi = {10.1186/1471-2105-9-221}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SpiessFR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/StaafVLJRHBR08, author = {Johan Staaf and Johan Vallon{-}Christersson and David Lindgren and Gunnar Juliusson and Richard Rosenquist and Mattias H{\"{o}}glund and {\AA}ke Borg and Markus Ringn{\'{e}}r}, title = {Normalization of Illumina Infinium whole-genome {SNP} data improves copy number estimates and allelic intensity ratios}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-409}, doi = {10.1186/1471-2105-9-409}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/StaafVLJRHBR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/StanislausARMMA08, author = {Romesh Stanislaus and John M. Arthur and Balaji Rajagopalan and Rick Moerschell and Brian McGlothlen and Jonas S. Almeida}, title = {An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-4}, doi = {10.1186/1471-2105-9-4}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/StanislausARMMA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/StanislausCDCHMA08, author = {Romesh Stanislaus and Mark Carey and Helena F. Deus and Kevin R. Coombes and Bryan T. J. Hennessy and Gordon B. Mills and Jonas S. Almeida}, title = {{RPPAML/RIMS:} {A} metadata format and an information management system for reverse phase protein arrays}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-555}, doi = {10.1186/1471-2105-9-555}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/StanislausCDCHMA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/StatnikovWA08, author = {Alexander R. Statnikov and Lily Wang and Constantin F. Aliferis}, title = {A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-319}, doi = {10.1186/1471-2105-9-319}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/StatnikovWA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Strimmer08, author = {Korbinian Strimmer}, title = {A unified approach to false discovery rate estimation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-303}, doi = {10.1186/1471-2105-9-303}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Strimmer08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/StroblBKAZ08, author = {Carolin Strobl and Anne{-}Laure Boulesteix and Thomas Kneib and Thomas Augustin and Achim Zeileis}, title = {Conditional variable importance for random forests}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-307}, doi = {10.1186/1471-2105-9-307}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/StroblBKAZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SturmBGHHLPSZRK08, author = {Marc Sturm and Andreas Bertsch and Clemens Gr{\"{o}}pl and Andreas Hildebrandt and Rene Hussong and Eva Lange and Nico Pfeifer and Ole Schulz{-}Trieglaff and Alexandra Zerck and Knut Reinert and Oliver Kohlbacher}, title = {OpenMS - An open-source software framework for mass spectrometry}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-163}, doi = {10.1186/1471-2105-9-163}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SturmBGHHLPSZRK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SuWBC08, author = {Shu{-}Yi Su and Jonathan White and David J. Balding and Lachlan J. M. Coin}, title = {Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-513}, doi = {10.1186/1471-2105-9-513}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SuWBC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SunFOW08, author = {Hong Sun and Hakan Ferhatosmanoglu and Motonori Ota and Yusu Wang}, title = {An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-344}, doi = {10.1186/1471-2105-9-344}, timestamp = {Mon, 02 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SunFOW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SunJY08, author = {Liang Sun and Shuiwang Ji and Jieping Ye}, title = {Adaptive diffusion kernel learning from biological networks for protein function prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-162}, doi = {10.1186/1471-2105-9-162}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SunJY08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SykesW08, author = {Michael T. Sykes and James R. Williamson}, title = {Envelope: interactive software for modeling and fitting complex isotope distributions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-446}, doi = {10.1186/1471-2105-9-446}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SykesW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TabeiKKA08, author = {Yasuo Tabei and Hisanori Kiryu and Taishin Kin and Kiyoshi Asai}, title = {A fast structural multiple alignment method for long {RNA} sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-33}, doi = {10.1186/1471-2105-9-33}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TabeiKKA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TalyMG08, author = {Jean{-}Fran{\c{c}}ois Taly and Antoine Marin and Jean{-}Fran{\c{c}}ois Gibrat}, title = {Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-6}, doi = {10.1186/1471-2105-9-6}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TalyMG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TanFX08, author = {Yuan{-}De Tan and Myriam Fornage and Hongyan Xu}, title = {Ranking analysis of \emph{F}-statistics for microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-142}, doi = {10.1186/1471-2105-9-142}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TanFX08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TanJ08, author = {Ching{-}Wai Tan and David T. Jones}, title = {Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-94}, doi = {10.1186/1471-2105-9-94}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TanJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TanSBF08, author = {Meng Piao Tan and Erin N. Smith and James R. Broach and Christodoulos A. Floudas}, title = {Microarray data mining: {A} novel optimization-based approach to uncover biologically coherent structures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-268}, doi = {10.1186/1471-2105-9-268}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TanSBF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Taneda08, author = {Akito Taneda}, title = {An efficient genetic algorithm for structural {RNA} pairwise alignment and its application to non-coding {RNA} discovery in yeast}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-521}, doi = {10.1186/1471-2105-9-521}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Taneda08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TangBJLVLEV08, author = {Jifeng Tang and Samantha J. Baldwin and Jeanne M. E. Jacobs and C. Gerard van der Linden and Roeland E. Voorrips and Jack A. M. Leunissen and Herman van Eck and Ben Vosman}, title = {Large-scale identification of polymorphic microsatellites using an \emph{in silico }approach}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-374}, doi = {10.1186/1471-2105-9-374}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TangBJLVLEV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TannerA08, author = {Stephen W. Tanner and Pankaj Agarwal}, title = {Gene Vector Analysis (Geneva): {A} unified method to detect differentially-regulated gene sets and similar microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-348}, doi = {10.1186/1471-2105-9-348}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TannerA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TautenhahnBN08, author = {Ralf Tautenhahn and Christoph B{\"{o}}ttcher and Steffen Neumann}, title = {Highly sensitive feature detection for high resolution {LC/MS}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-504}, doi = {10.1186/1471-2105-9-504}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TautenhahnBN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TempelJJ08, author = {S{\'{e}}bastien Tempel and Matthew Jurka and Jerzy Jurka}, title = {VisualRepbase: an interface for the study of occurrences of transposable element families}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-345}, doi = {10.1186/1471-2105-9-345}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TempelJJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TeyraPAP08, author = {Joan Teyra and Maciej Paszkowski{-}Rogacz and Gerd Anders and M. Teresa Pisabarro}, title = {{SCOWLP} classification: Structural comparison and analysis of protein binding regions}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-9}, doi = {10.1186/1471-2105-9-9}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TeyraPAP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ThanRN08, author = {Cuong Than and Derek A. Ruths and Luay Nakhleh}, title = {PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-322}, doi = {10.1186/1471-2105-9-322}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ThanRN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TienLWC08, author = {Yin{-}Jing Tien and Yun{-}Shien Lee and Han{-}Ming Wu and Chun{-}Houh Chen}, title = {Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-155}, doi = {10.1186/1471-2105-9-155}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TienLWC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TimmSBKN08, author = {Wiebke Timm and Alexandra Scherbart and Sebastian B{\"{o}}cker and Oliver Kohlbacher and Tim W. Nattkemper}, title = {Peak intensity prediction in {MALDI-TOF} mass spectrometry: {A} machine learning study to support quantitative proteomics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-443}, doi = {10.1186/1471-2105-9-443}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TimmSBKN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TintleBDBHPT08, author = {Nathan L. Tintle and Aaron A. Best and Matthew DeJongh and Dirk Van Bruggen and Fred Heffron and Steffen Porwollik and Ronald C. Taylor}, title = {Gene set analyses for interpreting microarray experiments on prokaryotic organisms}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-469}, doi = {10.1186/1471-2105-9-469}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TintleBDBHPT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TitulaerMSKBASKL08, author = {Mark K. Titulaer and Dana A. N. Mustafa and Ivar Siccama and Marco Konijnenburg and Peter C. Burgers and Arno C. Andeweg and Peter A. E. Sillevis Smitt and Johan M. Kros and Theo M. Luider}, title = {A software application for comparing large numbers of high resolution {MALDI-FTICR} {MS} spectra demonstrated by searching candidate biomarkers for glioma blood vessel formation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-133}, doi = {10.1186/1471-2105-9-133}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TitulaerMSKBASKL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ToV08, author = {Cuong To and Jiri Vohradsky}, title = {Supervised inference of gene-regulatory networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-2}, doi = {10.1186/1471-2105-9-2}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ToV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TomlinsonTACDBBTBBCMSAG08, author = {Christopher D. Tomlinson and Manjula Thimma and Stelios Alexandrakis and Tito Castillo and Jayne L. Dennis and Anthony Brooks and Thomas Bradley and Carly Turnbull and Ekaterini Blaveri and Geraint Barton and Norie Chiba and Klio Maratou and Pat Soutter and Timothy J. Aitman and Laurence Game}, title = {MiMiR - an integrated platform for microarray data sharing, mining and analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-379}, doi = {10.1186/1471-2105-9-379}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TomlinsonTACDBBTBBCMSAG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TouzainSDAKL08, author = {Fabrice Touzain and Sophie Schbath and Isabelle Debled{-}Rennesson and Bertrand Aigle and Gregory Kucherov and Pierre Leblond}, title = {SIGffRid: {A} tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-73}, doi = {10.1186/1471-2105-9-73}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TouzainSDAKL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TripathiKK08, author = {Abhishek Tripathi and Arto Klami and Samuel Kaski}, title = {Simple integrative preprocessing preserves what is shared in data sources}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-111}, doi = {10.1186/1471-2105-9-111}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TripathiKK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TruntzerMR08, author = {Caroline Truntzer and Delphine Maucort{-}Boulch and Pascal Roy}, title = {Comparative optimism in models involving both classical clinical and gene expression information}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-434}, doi = {10.1186/1471-2105-9-434}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TruntzerMR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TsaiLTCP08, author = {Yu{-}Shuen Tsai and Chin{-}Teng Lin and George C. Tseng and I{-}Fang Chung and Nikhil R. Pal}, title = {Discovery of dominant and dormant genes from expression data using a novel generalization of {SNR} for multi-class problems}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-425}, doi = {10.1186/1471-2105-9-425}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TsaiLTCP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TscherepanowJK08, author = {Marko Tscherepanow and Nickels Jensen and Franz Kummert}, title = {An incremental approach to automated protein localisation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-445}, doi = {10.1186/1471-2105-9-445}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TscherepanowJK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TuchlerVGK08, author = {Thomas T{\"{u}}chler and Golda Velez and Alexandra Graf and David P. Kreil}, title = {BibGlimpse: The case for a light-weight reprint manager in distributed literature research}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-406}, doi = {10.1186/1471-2105-9-406}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TuchlerVGK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TuikkalaENA08, author = {Johannes Tuikkala and Laura Elo and Olli Nevalainen and Tero Aittokallio}, title = {Missing value imputation improves clustering and interpretation of gene expression microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-202}, doi = {10.1186/1471-2105-9-202}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TuikkalaENA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TungH08, author = {Chun{-}Wei Tung and Shinn{-}Ying Ho}, title = {Computational identification of ubiquitylation sites from protein sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-310}, doi = {10.1186/1471-2105-9-310}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TungH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TuranalpC08, author = {Mehmet E. Turanalp and Tolga Can}, title = {Discovering functional interaction patterns in protein-protein interaction networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-276}, doi = {10.1186/1471-2105-9-276}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TuranalpC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TzengLL08, author = {Jengnan Tzeng and Henry Horng{-}Shing Lu and Wen{-}Hsiung Li}, title = {Multidimensional scaling for large genomic data sets}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-179}, doi = {10.1186/1471-2105-9-179}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TzengLL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/UvaR08, author = {Paolo Uva and Emanuele de Rinaldis}, title = {CrossHybDetector: detection of cross-hybridization events in {DNA} microarray experiments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-485}, doi = {10.1186/1471-2105-9-485}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/UvaR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VeberGBRS08, author = {Philippe Veber and Carito Guziolowski and Michel Le Borgne and Ovidiu Radulescu and Anne Siegel}, title = {Inferring the role of transcription factors in regulatory networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-228}, doi = {10.1186/1471-2105-9-228}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VeberGBRS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VeeramalaiYG08, author = {Mallika Veeramalai and Yuzhen Ye and Adam Godzik}, title = {{TOPS++FATCAT:} Fast flexible structural alignment using constraints derived from {TOPS+} Strings Model}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-358}, doi = {10.1186/1471-2105-9-358}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VeeramalaiYG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VeraJS08, author = {Gonzalo Vera and Ritsert C. Jansen and Remo Suppi}, title = {R/parallel - speeding up bioinformatics analysis with {R}}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-390}, doi = {10.1186/1471-2105-9-390}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VeraJS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VerderioPGR08, author = {Paolo Verderio and Sara Pizzamiglio and Fabio Gallo and Simon C. Ramsden}, title = {{FCI:} an R-based algorithm for evaluating uncertainty of absolute real-time {PCR} quantification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-13}, doi = {10.1186/1471-2105-9-13}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VerderioPGR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VergaraNFSM08, author = {Ismael A. Vergara and Tom{\'{a}}s Norambuena and Evandro Ferrada and Alex W. Slater and Francisco Melo}, title = {StAR: a simple tool for the statistical comparison of {ROC} curves}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-265}, doi = {10.1186/1471-2105-9-265}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/VergaraNFSM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VermaTKVR08, author = {Ruchi Verma and Ajit Tiwari and Sukhwinder Kaur and Grish C. Varshney and Gajendra P. S. Raghava}, title = {Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using {SVM} and {PSSM} profiles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-201}, doi = {10.1186/1471-2105-9-201}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VermaTKVR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VincentPLF08, author = {Marc Vincent and Andrea Passerini and Matthieu Labb{\'{e}} and Paolo Frasconi}, title = {A simplified approach to disulfide connectivity prediction from protein sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-20}, doi = {10.1186/1471-2105-9-20}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VincentPLF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VriesL08, author = {John K. Vries and Xiong Liu}, title = {Subfamily specific conservation profiles for proteins based on n-gram patterns}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-72}, doi = {10.1186/1471-2105-9-72}, timestamp = {Tue, 02 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VriesL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WahlNW08, author = {Sebastian Aljoscha Wahl and Katharina N{\"{o}}h and Wolfgang Wiechert}, title = {\({}^{\mbox{13}}\)C labeling experiments at metabolic nonstationary conditions: An exploratory study}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-152}, doi = {10.1186/1471-2105-9-152}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WahlNW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangMRS08, author = {Ling Wang and Monty A. Montano and Matt Rarick and Paola Sebastiani}, title = {Conditional clustering of temporal expression profiles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-147}, doi = {10.1186/1471-2105-9-147}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WangMRS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WatanabeMV08, author = {Ryosuke Watanabe and Enrique Morett and Edgar E. Vallejo}, title = {Inferring modules of functionally interacting proteins using the Bond Energy Algorithm}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-285}, doi = {10.1186/1471-2105-9-285}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WatanabeMV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WeddingtonSHRYG08, author = {Nodin Weddington and Alexander Stuy and Ichiro Hiratani and Tyrone Ryba and Tomoki Yokochi and David M. Gilbert}, title = {ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-530}, doi = {10.1186/1471-2105-9-530}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WeddingtonSHRYG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WegrzynDVH08, author = {Jill L. Wegrzyn and Thomas M. Drudge and Faramarz Valafar and Vivian Hook}, title = {Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-232}, doi = {10.1186/1471-2105-9-232}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WegrzynDVH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WeiFFN08, author = {Ning Wei and Erwin Flaschel and Karl Friehs and Tim W. Nattkemper}, title = {A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-449}, doi = {10.1186/1471-2105-9-449}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WeiFFN08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WeirauchWBS08, author = {Matthew T. Weirauch and Christopher K. Wong and Alexandra B. Byrne and Joshua M. Stuart}, title = {Information-based methods for predicting gene function from systematic gene knock-downs}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-463}, doi = {10.1186/1471-2105-9-463}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WeirauchWBS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WendlW08, author = {Michael C. Wendl and Richard K. Wilson}, title = {Aspects of coverage in medical {DNA} sequencing}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-239}, doi = {10.1186/1471-2105-9-239}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WendlW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WestholmXRK08, author = {Jakub Orzechowski Westholm and Feifei Xu and Hans Ronne and Henryk Jan Komorowski}, title = {Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-484}, doi = {10.1186/1471-2105-9-484}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WestholmXRK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WhelanK08, author = {Ken E. Whelan and Ross D. King}, title = {Using a logical model to predict the growth of yeast}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-97}, doi = {10.1186/1471-2105-9-97}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WhelanK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WhiteH08, author = {W. Timothy J. White and Michael D. Hendy}, title = {Compressing {DNA} sequence databases with coil}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-242}, doi = {10.1186/1471-2105-9-242}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WhiteH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WilmLS08, author = {Andreas Wilm and Kornelia Linnenbrink and Gerhard Steger}, title = {ConStruct: Improved construction of {RNA} consensus structures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-219}, doi = {10.1186/1471-2105-9-219}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WilmLS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WirawanKHS08, author = {Adrianto Wirawan and Chee Keong Kwoh and Nim Tri Hieu and Bertil Schmidt}, title = {{CBESW:} Sequence Alignment on the Playstation 3}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-377}, doi = {10.1186/1471-2105-9-377}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WirawanKHS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WonCRW08, author = {Kyoung{-}Jae Won and Iouri Chepelev and Bing Ren and Wei Wang}, title = {Prediction of regulatory elements in mammalian genomes using chromatin signatures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-547}, doi = {10.1186/1471-2105-9-547}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WonCRW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WuL08, author = {Wei{-}Sheng Wu and Wen{-}Hsiung Li}, title = {Systematic identification of yeast cell cycle transcription factors using multiple data sources}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-522}, doi = {10.1186/1471-2105-9-522}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WuL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WuSYCL08, author = {Tongtong Wu and Wei Sun and Shinsheng Yuan and Chun{-}Houh Chen and Ker{-}Chau Li}, title = {A method for analyzing censored survival phenotype with gene expression data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-417}, doi = {10.1186/1471-2105-9-417}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WuSYCL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XiR08, author = {Yuanxin Xi and David M. Rocke}, title = {Baseline Correction for {NMR} Spectroscopic Metabolomics Data Analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-324}, doi = {10.1186/1471-2105-9-324}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XiR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XiaBTW08, author = {Jianguo Xia and Trent C. Bjorndahl and Peter Tang and David S. Wishart}, title = {MetaboMiner - semi-automated identification of metabolites from 2D {NMR} spectra of complex biofluids}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-507}, doi = {10.1186/1471-2105-9-507}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XiaBTW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XiangDDHWFD08, author = {Qian Xiang and Xianhua Dai and Yangyang Deng and Caisheng He and Jiang Wang and Jihua Feng and Zhiming Dai}, title = {Missing value imputation for microarray gene expression data using histone acetylation information}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-252}, doi = {10.1186/1471-2105-9-252}, timestamp = {Tue, 19 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XiangDDHWFD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XiongZMTX08, author = {Huiling Xiong and Dapeng Zhang and Christopher J. Martyniuk and Vance L. Trudeau and Xuhua Xia}, title = {Using Generalized Procrustes Analysis {(GPA)} for normalization of cDNA microarray data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-25}, doi = {10.1186/1471-2105-9-25}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XiongZMTX08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XuDZ08, author = {Tao Xu and LinFang Du and Yan Zhou}, title = {Evaluation of GO-based functional similarity measures using \emph{S. cerevisiae }protein interaction and expression profile data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-472}, doi = {10.1186/1471-2105-9-472}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XuDZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XuHQYPP08, author = {Jialin Xu and Yun He and Boqin Qiang and Jiangang Yuan and Xiaozhong Peng and Xian{-}Ming Pan}, title = {A novel method for high accuracy sumoylation site prediction from protein sequences}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-8}, doi = {10.1186/1471-2105-9-8}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/XuHQYPP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XuTWG08, author = {Lei Xu and Aik Choon Tan and Raimond L. Winslow and Donald Geman}, title = {Merging microarray data from separate breast cancer studies provides a robust prognostic test}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-125}, doi = {10.1186/1471-2105-9-125}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XuTWG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/XuYF08, author = {Hua Xu and Lanhao Yang and Michael A. Freitas}, title = {A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-347}, doi = {10.1186/1471-2105-9-347}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/XuYF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YanHW08, author = {Changhui Yan and Jing Hu and Yingfeng Wang}, title = {Discrimination of outer membrane proteins with improved performance}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-47}, doi = {10.1186/1471-2105-9-47}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YanHW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YanS08, author = {Xiting Yan and Fengzhu Sun}, title = {Testing gene set enrichment for subset of genes: Sub-GSE}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-362}, doi = {10.1186/1471-2105-9-362}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YanS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangHLLYDWCF08, author = {Hsin{-}Chou Yang and Mei{-}Chu Huang and Ling{-}Hui Li and Chien{-}Hsing Lin and Alice L. T. Yu and Mitchell B. Diccianni and Jer{-}Yuarn Wu and Yuan{-}Tsong Chen and Cathy S. J. Fann}, title = {{MPDA:} Microarray pooled {DNA} analyzer}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-196}, doi = {10.1186/1471-2105-9-196}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YangHLLYDWCF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangS08, author = {Qingwu Yang and Sing{-}Hoi Sze}, title = {Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-320}, doi = {10.1186/1471-2105-9-320}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YangS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangVHMWQ08, author = {Ling Yang and Thomas M. Vondriska and Zhangang Han and W. Robb MacLellan and James N. Weiss and Zhilin Qu}, title = {Deducing topology of protein-protein interaction networks from experimentally measured sub-networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-301}, doi = {10.1186/1471-2105-9-301}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YangVHMWQ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangZYAZ08, author = {Jianyi Yang and Yu Zhou and Zu{-}Guo Yu and Vo Anh and Li{-}Qian Zhou}, title = {Human Pol {II} promoter recognition based on primary sequences and free energy of dinucleotides}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-113}, doi = {10.1186/1471-2105-9-113}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YangZYAZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YaoCSHLR08, author = {Jianchao Yao and Chunqi Chang and Mari L. Salmi and Yeung Sam Hung and Ann E. Loraine and Stanley J. Roux}, title = {Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-288}, doi = {10.1186/1471-2105-9-288}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YaoCSHLR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YaoZS08, author = {Xin{-}Qiu Yao and Huaiqiu Zhu and Zhen{-}Su She}, title = {A dynamic Bayesian network approach to protein secondary structure prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-49}, doi = {10.1186/1471-2105-9-49}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YaoZS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YeturuC08, author = {Kalidas Yeturu and Nagasuma R. Chandra}, title = {PocketMatch: {A} new algorithm to compare binding sites in protein structures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-543}, doi = {10.1186/1471-2105-9-543}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YeturuC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YiPL08, author = {Sung{-}Gon Yi and Taesung Park and Jae K. Lee}, title = {Response projected clustering for direct association with physiological and clinical response data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-76}, doi = {10.1186/1471-2105-9-76}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YiPL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YinZBLSPW08, author = {Zheng Yin and Xiaobo Zhou and Chris Bakal and Fuhai Li and Youxian Sun and Norbert Perrimon and Stephen T. C. Wong}, title = {Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-264}, doi = {10.1186/1471-2105-9-264}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YinZBLSPW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YooHZZ08, author = {Paul D. Yoo and Yung Shwen Ho and Bing Bing Zhou and Albert Y. Zomaya}, title = {SiteSeek: Post-translational modification analysis using adaptive locality-effective kernel methods and new profiles}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-272}, doi = {10.1186/1471-2105-9-272}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YooHZZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YooLKRK08, author = {Jinho Yoo and Youngbok Lee and Yujung Kim and Sun Young Rha and Yangseok Kim}, title = {SNPAnalyzer 2.0: {A} web-based integrated workbench for linkage disequilibrium analysis and association analysis}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-290}, doi = {10.1186/1471-2105-9-290}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YooLKRK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YoosephLS08, author = {Shibu Yooseph and Weizhong Li and Granger G. Sutton}, title = {Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-182}, doi = {10.1186/1471-2105-9-182}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YoosephLS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YouHGLMHLDA08, author = {Frank M. You and Naxin Huo and Yong Qiang Gu and Ming{-}Cheng Luo and Yaqin Ma and Dave Hane and Gerard R. Lazo and Jan Dvorak and Olin D. Anderson}, title = {BatchPrimer3: {A} high throughput web application for {PCR} and sequencing primer design}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-253}, doi = {10.1186/1471-2105-9-253}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YouHGLMHLDA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuCDYWLKG08, author = {Wei Yu and Melinda Clyne and Siobhan M. Dolan and Ajay Yesupriya and Anja Wulf and Tiebin Liu and Muin J. Khoury and Marta Gwinn}, title = {GAPscreener: An automatic tool for screening human genetic association literature in PubMed using the support vector machine technique}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-205}, doi = {10.1186/1471-2105-9-205}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YuCDYWLKG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuWLKG08, author = {Wei Yu and Anja Wulf and Tiebin Liu and Muin J. Khoury and Marta Gwinn}, title = {Gene Prospector: An evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-528}, doi = {10.1186/1471-2105-9-528}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YuWLKG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuZDJSR08, author = {Chenggang Yu and Nela Zavaljevski and Valmik Desai and Seth Johnson and Fred J. Stevens and Jaques Reifman}, title = {The development of {PIPA:} an integrated and automated pipeline for genome-wide protein function annotation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-52}, doi = {10.1186/1471-2105-9-52}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YuZDJSR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YuanLW08, author = {Yinyin Yuan and Chang{-}Tsun Li and Roland Wilson}, title = {Partial mixture model for tight clustering of gene expression time-course}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-287}, doi = {10.1186/1471-2105-9-287}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YuanLW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZamboniKH08, author = {Nicola Zamboni and Anne K{\"{u}}mmel and Matthias Heinemann}, title = {anNET: a tool for network-embedded thermodynamic analysis of quantitative metabolome data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-199}, doi = {10.1186/1471-2105-9-199}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZamboniKH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZaslavskyBT08, author = {Leonid Zaslavsky and Yiming Bao and Tatiana A. Tatusova}, title = {Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-237}, doi = {10.1186/1471-2105-9-237}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZaslavskyBT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Zhang08, author = {Yang Zhang}, title = {{I-TASSER} server for protein 3D structure prediction}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-40}, doi = {10.1186/1471-2105-9-40}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/Zhang08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangG08, author = {Shu{-}Dong Zhang and Timothy W. Gant}, title = {A simple and robust method for connecting small-molecule drugs using gene-expression signatures}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-258}, doi = {10.1186/1471-2105-9-258}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangKJWR08, author = {Shuxing Zhang and Kamal Kumar and Xiaohui Jiang and Anders Wallqvist and Jaques Reifman}, title = {{DOVIS:} an implementation for high-throughput virtual screening using AutoDock}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-126}, doi = {10.1186/1471-2105-9-126}, timestamp = {Fri, 22 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangKJWR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangLCD08, author = {Feng Zhang and Jianfeng Liu and Jie Chen and Hong{-}Wen Deng}, title = {{HAPSIMU:} a genetic simulation platform for population-based association studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-331}, doi = {10.1186/1471-2105-9-331}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLCD08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangLLXZH08, author = {Jiyang Zhang and Jianqi Li and Xin Liu and Hongwei Xie and Yunping Zhu and Fuchu He}, title = {A nonparametric model for quality control of database search results in shotgun proteomics}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-29}, doi = {10.1186/1471-2105-9-29}, timestamp = {Tue, 20 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLLXZH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangXRCR08, author = {Yuji Zhang and Jianhua Xuan and Benildo de los Reyes and Robert Clarke and Habtom W. Ressom}, title = {Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-203}, doi = {10.1186/1471-2105-9-203}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangXRCR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangXSZS08, author = {Song Zhang and Xuefeng Xia and Jincheng Shen and Yun Zhou and Zhirong Sun}, title = {DBMLoc: a Database of proteins with multiple subcellular localizations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-127}, doi = {10.1186/1471-2105-9-127}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangXSZS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangZCSRK08, author = {Hua Zhang and Tuo Zhang and Ke Chen and Shiyi Shen and Jishou Ruan and Lukasz A. Kurgan}, title = {Sequence based residue depth prediction using evolutionary information and predicted secondary structure}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-388}, doi = {10.1186/1471-2105-9-388}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZCSRK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangZS08, author = {Wensheng Zhang and Sige Zou and Jiuzhou Song}, title = {Term-tissue specific models for prediction of gene ontology biological processes using transcriptional profiles of aging in drosophila melanogaster}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-129}, doi = {10.1186/1471-2105-9-129}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangZW08, author = {Min Zhang and Dabao Zhang and Martin T. Wells}, title = {Variable selection for large \emph{p }small \emph{n }regression models with incomplete data: Mapping {QTL} with epistases}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-251}, doi = {10.1186/1471-2105-9-251}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhaoWCA08, author = {Xing{-}Ming Zhao and Yong Wang and Luonan Chen and Kazuyuki Aihara}, title = {Gene function prediction using labeled and unlabeled data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-57}, doi = {10.1186/1471-2105-9-57}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoWCA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhengK08, author = {Ce Zheng and Lukasz A. Kurgan}, title = {Prediction of beta-turns at over 80{\%} accuracy based on an ensemble of predicted secondary structures and multiple alignments}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-430}, doi = {10.1186/1471-2105-9-430}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhengK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhengQYWXZL08, author = {Guangyong Zheng and Ziliang Qian and Qing Yang and Chaochun Wei and Lu Xie and Yangyong Zhu and Yixue Li}, title = {The combination approach of {SVM} and {ECOC} for powerful identification and classification of transcription factor}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-282}, doi = {10.1186/1471-2105-9-282}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhengQYWXZL08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhouBF08, author = {Cong Zhou and Lucas D. Bowler and Jianfeng Feng}, title = {A machine learning approach to explore the spectra intensity pattern of peptides using tandem mass spectrometry data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-325}, doi = {10.1186/1471-2105-9-325}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhouBF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhouBFS08, author = {Miaomiao Zhou and Jos Boekhorst and Christof Francke and Roland J. Siezen}, title = {LocateP: Genome-scale subcellular-location predictor for bacterial proteins}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-173}, doi = {10.1186/1471-2105-9-173}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhouBFS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhouOX08, author = {Fengfeng Zhou and Victor Olman and Ying Xu}, title = {Barcodes for genomes and applications}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-546}, doi = {10.1186/1471-2105-9-546}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhouOX08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhouSF08, author = {Leming Zhou and Jonathan Stanton and Liliana Florea}, title = {Universal seeds for cDNA-to-genome comparison}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-36}, doi = {10.1186/1471-2105-9-36}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhouSF08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhuLMWXCHW08, author = {Yitan Zhu and Huai Li and David J. Miller and Zuyi Wang and Jianhua Xuan and Robert Clarke and Eric P. Hoffman and Yue Joseph Wang}, title = {caBIG\({}^{\mbox{TM}}\) {VISDA:} Modeling, visualization, and discovery for cluster analysis of genomic data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-383}, doi = {10.1186/1471-2105-9-383}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhuLMWXCHW08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhuM08, author = {Manli Zhu and Aleix M. Mart{\'{\i}}nez}, title = {Using the information embedded in the testing sample to break the limits caused by the small sample size in microarray-based classification}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-280}, doi = {10.1186/1471-2105-9-280}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhuM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhuZX08, author = {Yuerong Zhu and Yuelin Zhu and Wei Xu}, title = {EzArray: {A} web-based highly automated Affymetrix expression array data management and analysis system}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-46}, doi = {10.1186/1471-2105-9-46}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhuZX08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZiZRK08, author = {Zhike Zi and Yanan Zheng and Ann E. Rundell and Edda Klipp}, title = {{SBML-SAT:} a systems biology markup language {(SBML)} based sensitivity analysis tool}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-342}, doi = {10.1186/1471-2105-9-342}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZiZRK08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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