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@article{DBLP:journals/bib/AllenWCGMXX12, author = {Jeffrey D. Allen and Siling Wang and Min Chen and Luc Girard and John D. Minna and Yang Xie and Guanghua Xiao}, title = {Probe mapping across multiple microarray platforms}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {547--554}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr076}, doi = {10.1093/BIB/BBR076}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/AllenWCGMXX12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Altman12, author = {Russ B. Altman}, title = {Editorial: Current progress in Bioinformatics 2012}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {393--394}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs042}, doi = {10.1093/BIB/BBS042}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Altman12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BebekKPC12, author = {G{\"{u}}rkan Bebek and Mehmet Koyut{\"{u}}rk and Nathan D. Price and Mark R. Chance}, title = {Network biology methods integrating biological data for translational science}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {446--459}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr075}, doi = {10.1093/BIB/BBR075}, timestamp = {Thu, 03 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BebekKPC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Benitez-PaezCG12, author = {Alfonso Ben{\'{\i}}tez{-}P{\'{a}}ez and Sonia C{\'{a}}rdenas{-}Brito and Andr{\'{e}}s J. Guti{\'{e}}rrez}, title = {A practical guide for the computational selection of residues to be experimentally characterized in protein families}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {329--336}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr052}, doi = {10.1093/BIB/BBR052}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Benitez-PaezCG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BerrarF12, author = {Daniel P. Berrar and Peter A. Flach}, title = {Caveats and pitfalls of {ROC} analysis in clinical microarray research (and how to avoid them)}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {83--97}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr008}, doi = {10.1093/BIB/BBR008}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BerrarF12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Borenstein12, author = {Elhanan Borenstein}, title = {Computational systems biology and \emph{in silico} modeling of the human microbiome}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {769--780}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs022}, doi = {10.1093/BIB/BBS022}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Borenstein12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BoulesteixBBS12, author = {Anne{-}Laure Boulesteix and Andreas Bender and Justo Lorenzo Bermejo and Carolin Strobl}, title = {Random forest Gini importance favours SNPs with large minor allele frequency: impact, sources and recommendations}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {292--304}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr053}, doi = {10.1093/BIB/BBR053}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BoulesteixBBS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/CapriottiNKB12, author = {Emidio Capriotti and Nathan L. Nehrt and Maricel G. Kann and Yana Bromberg}, title = {Bioinformatics for personal genome interpretation}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {495--512}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr070}, doi = {10.1093/BIB/BBR070}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/CapriottiNKB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/CollisonHWNSB12, author = {Matthew Collison and Robert P. Hirt and Anil Wipat and Sirintra Nakjang and Philippe Sanseau and James R. Brown}, title = {Data mining the human gut microbiota for therapeutic targets}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {751--768}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs002}, doi = {10.1093/BIB/BBS002}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/CollisonHWNSB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DrogeM12, author = {Johannes Dr{\"{o}}ge and Alice Carolyn McHardy}, title = {Taxonomic binning of metagenome samples generated by next-generation sequencing technologies}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {646--655}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs031}, doi = {10.1093/BIB/BBS031}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/DrogeM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/DurrantSAAMMPVJS12, author = {Caroline Durrant and Morris A. Swertz and Rudi Alberts and Danny Arends and Steffen M{\"{o}}ller and Richard Mott and Pjotr Prins and K. Joeri van der Velde and Ritsert C. Jansen and Klaus Schughart}, title = {Bioinformatics tools and database resources for systems genetics analysis in mice - a short review and an evaluation of future needs}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {135--142}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr026}, doi = {10.1093/BIB/BBR026}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/DurrantSAAMMPVJS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Dutheil12, author = {Julien Dutheil}, title = {Detecting coevolving positions in a molecule: why and how to account for phylogeny}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {228--243}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr048}, doi = {10.1093/BIB/BBR048}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Dutheil12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/FaroGS12, author = {Alberto Faro and Daniela Giordano and Concetto Spampinato}, title = {Combining literature text mining with microarray data: advances for system biology modeling}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {61--82}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr018}, doi = {10.1093/BIB/BBR018}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/FaroGS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/FilippoRFC12, author = {Carlotta De Filippo and Matteo Ramazzotti and Paolo Fontana and Duccio Cavalieri}, title = {Bioinformatic approaches for functional annotation and pathway inference in metagenomics data}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {696--710}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs070}, doi = {10.1093/BIB/BBS070}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/FilippoRFC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/FinotelloLFPABFCT12, author = {Francesca Finotello and Enrico Lavezzo and Paolo Fontana and Denis Peruzzo and Alessandro Albiero and Luisa Barzon and Marco Falda and Barbara Di Camillo and Stefano Toppo}, title = {Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {269--280}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr063}, doi = {10.1093/BIB/BBR063}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/FinotelloLFPABFCT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/FloresBSZH12, author = {Samuel Flores and Julie Bernauer and Seokmin Shin and Ruhong Zhou and Xuhui Huang}, title = {Multiscale modeling of macromolecular biosystems}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {395--405}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr077}, doi = {10.1093/BIB/BBR077}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/FloresBSZH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/FosterBGM12, author = {James A. Foster and John Bunge and Jack A. Gilbert and Jason H. Moore}, title = {Measuring the microbiome: perspectives on advances in DNA-based techniques for exploring microbial life}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {420--429}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr080}, doi = {10.1093/BIB/BBR080}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/FosterBGM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/GuzziMGC12, author = {Pietro Hiram Guzzi and Marco Mina and Concettina Guerra and Mario Cannataro}, title = {Semantic similarity analysis of protein data: assessment with biological features and issues}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {569--585}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr066}, doi = {10.1093/BIB/BBR066}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/GuzziMGC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/HahnCGS12, author = {Udo Hahn and Kevin Bretonnel Cohen and Yael Garten and Nigam H. Shah}, title = {Mining the pharmacogenomics literature - a survey of the state of the art}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {460--494}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs018}, doi = {10.1093/BIB/BBS018}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/HahnCGS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/HuangSL12, author = {Norman Huang and Parantu K. Shah and Cheng Li}, title = {Lessons from a decade of integrating cancer copy number alterations with gene expression profiles}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {305--316}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr056}, doi = {10.1093/BIB/BBR056}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/HuangSL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/HuangWYH12, author = {Ting Huang and Jingjing Wang and Weichuan Yu and Zengyou He}, title = {Protein inference: a review}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {586--614}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs004}, doi = {10.1093/BIB/BBS004}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/HuangWYH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/HungYHWD12, author = {Jui{-}Hung Hung and Tun{-}Hsiang Yang and Zhenjun Hu and Zhiping Weng and Charles DeLisi}, title = {Gene set enrichment analysis: performance evaluation and usage guidelines}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {281--291}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr049}, doi = {10.1093/BIB/BBR049}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/HungYHWD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/HunterMJMPSH12, author = {Chris I. Hunter and Alex L. Mitchell and Philip Jones and Craig McAnulla and Sebastien Pesseat and Maxim Scheremetjew and Sarah Hunter}, title = {Metagenomic analysis: the challenge of the data bonanza}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {743--746}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs020}, doi = {10.1093/BIB/BBS020}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/HunterMJMPSH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KawanoOTB12, author = {Shin Kawano and Hiromasa Ono and Toshihisa Takagi and Hidemasa Bono}, title = {Tutorial videos of bioinformatics resources: online distribution trial in Japan named TogoTV}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {258--268}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr039}, doi = {10.1093/BIB/BBR039}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KawanoOTB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KillcoyneHRDB12, author = {Sarah A. Killcoyne and Jeremy Handcock and Thomas Robinson and Eric W. Deutsch and John Boyle}, title = {Interfaces to PeptideAtlas: a case study of standard data access systems}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {615--626}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr067}, doi = {10.1093/BIB/BBR067}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KillcoyneHRDB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KoschmiederZTSL12, author = {Andr{\'{e}} Koschmieder and Karin Zimmermann and Silke Tri{\ss}l and Thomas Stoltmann and Ulf Leser}, title = {Tools for managing and analyzing microarray data}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {46--60}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr010}, doi = {10.1093/BIB/BBR010}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KoschmiederZTSL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KrzywinskiBJM12, author = {Martin Krzywinski and Inan{\c{c}} Birol and Steven J. M. Jones and Marco A. Marra}, title = {Hive plots - rational approach to visualizing networks}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {627--644}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr069}, doi = {10.1093/BIB/BBR069}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KrzywinskiBJM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/LiFNWW12, author = {Weizhong Li and Limin Fu and Beifang Niu and Sitao Wu and John C. Wooley}, title = {Ultrafast clustering algorithms for metagenomic sequence analysis}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {656--668}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs035}, doi = {10.1093/BIB/BBS035}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/LiFNWW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/LiJLLWLCWLWY12, author = {Xia Li and Wei Jiang and Wei Li and Baofeng Lian and Shuyuan Wang and Mingzhi Liao and Xiaowen Chen and Yanqiu Wang and Yingli Lv and Shiyuan Wang and Lei Yang}, title = {Dissection of human MiRNA regulatory influence to subpathway}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {175--186}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr043}, doi = {10.1093/BIB/BBR043}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/LiJLLWLCWLWY12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MandeMG12, author = {Sharmila S. Mande and Monzoorul Haque Mohammed and Tarini Shankar Ghosh}, title = {Classification of metagenomic sequences: methods and challenges}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {669--681}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs054}, doi = {10.1093/BIB/BBS054}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/MandeMG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/McCallA12, author = {Matthew N. McCall and Anthony Almudevar}, title = {Affymetrix GeneChip microarray preprocessing for multivariate analyses}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {536--546}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr072}, doi = {10.1093/BIB/BBR072}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/McCallA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MouradSL12, author = {Rapha{\"{e}}l Mourad and Christine Sinoquet and Philippe Leray}, title = {Probabilistic graphical models for genetic association studies}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {20--33}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr015}, doi = {10.1093/BIB/BBR015}, timestamp = {Tue, 30 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/MouradSL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/NabhanS12, author = {Ahmed Ragab Nabhan and Indra Neil Sarkar}, title = {The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {122--134}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr014}, doi = {10.1093/BIB/BBR014}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/NabhanS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Ngom-BruB12, author = {Catherine Ngom{-}Bru and Caroline Barretto}, title = {Gut microbiota: methodological aspects to describe taxonomy and functionality}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {747--750}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs019}, doi = {10.1093/BIB/BBS019}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Ngom-BruB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/NolinDBC12, author = {Marc{-}Alexandre Nolin and Michel Dumontier and Fran{\c{c}}ois Belleau and Jacques Corbeil}, title = {Building an {HIV} data mashup using Bio2RDF}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {98--106}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr003}, doi = {10.1093/BIB/BBR003}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/NolinDBC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/PrakashT12, author = {Tulika Prakash and Todd D. Taylor}, title = {Functional assignment of metagenomic data: challenges and applications}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {711--727}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs033}, doi = {10.1093/BIB/BBS033}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/PrakashT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/QuoKPZXWA12, author = {Chang F. Quo and Chanchala Kaddi and John H. Phan and Amin Zollanvari and Mingqing Xu and May D. Wang and Gil Alterovitz}, title = {Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {430--445}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs026}, doi = {10.1093/BIB/BBS026}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/QuoKPZXWA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/RotherPPRWB12, author = {Kristian Rother and Wojciech Potrzebowski and Tomasz Puton and Magdalena Rother and Ewa Wywial and Janusz M. Bujnicki}, title = {A toolbox for developing bioinformatics software}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {244--257}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr035}, doi = {10.1093/BIB/BBR035}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/RotherPPRWB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SantamariaFCCGLLMAVP12, author = {Monica Santamaria and Bruno Fosso and Arianna Consiglio and Giorgio De Caro and Giorgio Grillo and Flavio Licciulli and Sabino Liuni and Marinella Marzano and Daniel Alonso{-}Alemany and Gabriel Valiente and Graziano Pesole}, title = {Reference databases for taxonomic assignment in metagenomics}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {682--695}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs036}, doi = {10.1093/BIB/BBS036}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SantamariaFCCGLLMAVP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SchlatterPWPSBTED12, author = {Rebekka Schlatter and Nicole Philippi and Gaby Wangorsch and Robert Pick and Oliver Sawodny and Christoph Borner and Jens Timmer and Michael Ederer and Thomas Dandekar}, title = {Integration of Boolean models exemplified on hepatocyte signal transduction}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {365--376}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr065}, doi = {10.1093/BIB/BBR065}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SchlatterPWPSBTED12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SchneiderWBWBRBVGJFNRBJLMJVLAB12, author = {Maria Victoria Schneider and Peter Walter and Marie{-}Claude Blatter and James Watson and Michelle D. Brazas and Kristian Rother and Aidan Budd and Allegra Via and Celia W. G. van Gelder and Joachim Jacob and Pedro L. Fernandes and Tommi H. Nyr{\"{o}}nen and Javier De Las Rivas and Thomas Blicher and Rafael C. Jim{\'{e}}nez and Jane E. Loveland and Jennifer McDowall and Philip Jones and Brendan W. Vaughan and Rodrigo Lopez and Teresa K. Attwood and Catherine Brooksbank}, title = {Bioinformatics Training Network {(BTN):} a community resource for bioinformatics trainers}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {383--389}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr064}, doi = {10.1093/BIB/BBR064}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SchneiderWBWBRBVGJFNRBJLMJVLAB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ShelenkovK12, author = {Andrew A. Shelenkov and Eugene V. Korotkov}, title = {{LEPSCAN} - a web server for searching latent periodicity in {DNA} sequences}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {143--149}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr044}, doi = {10.1093/BIB/BBR044}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ShelenkovK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Shen12, author = {Li Shen}, title = {Principles of Computational Modeling in NeuroscienceDavid Sterratt, Bruce Graham, Andrew Gillies and David Willshaw}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {390--392}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs003}, doi = {10.1093/BIB/BBS003}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Shen12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SmildeTHJH12, author = {Age K. Smilde and Marieke E. Timmerman and Margriet M. W. B. Hendriks and Jeroen J. Jansen and Huub C. J. Hoefsloot}, title = {Generic framework for high-dimensional fixed-effects {ANOVA}}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {524--535}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr071}, doi = {10.1093/BIB/BBR071}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SmildeTHJH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Steen12, author = {Kristel Van Steen}, title = {Travelling the world of gene-gene interactions}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {1--19}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr012}, doi = {10.1093/BIB/BBR012}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Steen12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SunCHKFWM12, author = {Yijun Sun and Yunpeng Cai and Susan M. Huse and Rob Knight and William G. Farmerie and Xiaoyu Wang and Volker Mai}, title = {A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {107--121}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr009}, doi = {10.1093/BIB/BBR009}, timestamp = {Sun, 28 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SunCHKFWM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/TeelingG12, author = {Hanno Teeling and Frank Oliver Gl{\"{o}}ckner}, title = {Current opportunities and challenges in microbial metagenome analysis - a bioinformatic perspective}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {728--742}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs039}, doi = {10.1093/BIB/BBS039}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/TeelingG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/TeifR12, author = {Vladimir B. Teif and Karsten Rippe}, title = {Calculating transcription factor binding maps for chromatin}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {187--201}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr037}, doi = {10.1093/BIB/BBR037}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/TeifR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ValienteP12, author = {Gabriel Valiente and Graziano Pesole}, title = {Editorial}, journal = {Briefings Bioinform.}, volume = {13}, number = {6}, pages = {645}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs079}, doi = {10.1093/BIB/BBS079}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ValienteP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WangLQWC12, author = {Juan Wang and Zhi{-}xin Li and Chengxiang Qiu and Dong Wang and Qinghua Cui}, title = {The relationship between rational drug design and drug side effects}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {377--382}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr061}, doi = {10.1093/BIB/BBR061}, timestamp = {Mon, 01 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/WangLQWC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WangWPW12, author = {Chenguang Wang and Zhong Wang and Daniel R. Prows and Rongling Wu}, title = {A computational framework for the inheritance pattern of genomic imprinting for complex traits}, journal = {Briefings Bioinform.}, volume = {13}, number = {1}, pages = {34--45}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr023}, doi = {10.1093/BIB/BBR023}, timestamp = {Tue, 14 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/WangWPW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WangXWTZWLBW12, author = {Yakun Wang and Meng Xu and Zhong Wang and Ming Tao and Junjia Zhu and Li Wang and Runze Li and Scott A. Berceli and Rongling Wu}, title = {How to cluster gene expression dynamics in response to environmental signals}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {162--174}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr032}, doi = {10.1093/BIB/BBR032}, timestamp = {Tue, 14 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/WangXWTZWLBW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WangZMR12, author = {Jinlian Wang and Yuji Zhang and Catalin Marian and Habtom W. Ressom}, title = {Identification of aberrant pathways and network activities from high-throughput data}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {406--419}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs001}, doi = {10.1093/BIB/BBS001}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/WangZMR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WangZZGZZG12, author = {Jing Wang and Xianxiao Zhou and Jing Zhu and Yunyan Gu and Wenyuan Zhao and Jinfeng Zou and Zheng Guo}, title = {GO-function: deriving biologically relevant functions from statistically significant functions}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {216--227}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr041}, doi = {10.1093/BIB/BBR041}, timestamp = {Tue, 12 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/WangZZGZZG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WongBQH12, author = {Elisabeth Wong and Brittany A. Baur and Saad Quader and Chun{-}Hsi Huang}, title = {Biological network motif detection: principles and practice}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {202--215}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr033}, doi = {10.1093/BIB/BBR033}, timestamp = {Fri, 06 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/WongBQH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WuC12, author = {Ming Wu and Christina Chan}, title = {Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data}, journal = {Briefings Bioinform.}, volume = {13}, number = {2}, pages = {150--161}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr029}, doi = {10.1093/BIB/BBR029}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/WuC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/YangWC12, author = {Runqing Yang and Xin Wang and Yuehua Cui}, title = {Bayesian inference for genomic imprinting underlying developmental characteristics}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {555--568}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr079}, doi = {10.1093/BIB/BBR079}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/YangWC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/YuLM12, author = {Tao Yu and Jialiang Li and Shuangge Ma}, title = {Adjusting confounders in ranking biomarkers: a model-based {ROC} approach}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {513--523}, year = {2012}, url = {https://doi.org/10.1093/bib/bbs008}, doi = {10.1093/BIB/BBS008}, timestamp = {Mon, 22 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/YuLM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ZhangUMZ12, author = {Lianming Zhang and Keiko Udaka and Hiroshi Mamitsuka and Shanfeng Zhu}, title = {Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {350--364}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr060}, doi = {10.1093/BIB/BBR060}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ZhangUMZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ZhaoTPWGDW12, author = {Xiyang Zhao and Chunfa Tong and Xiaoming Pang and Zhong Wang and Yunqian Guo and Fang Du and Rongling Wu}, title = {Functional mapping of ontogeny in flowering plants}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {317--328}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr054}, doi = {10.1093/BIB/BBR054}, timestamp = {Tue, 14 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ZhaoTPWGDW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/duVerleM12, author = {David duVerle and Hiroshi Mamitsuka}, title = {A review of statistical methods for prediction of proteolytic cleavage}, journal = {Briefings Bioinform.}, volume = {13}, number = {3}, pages = {337--349}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr059}, doi = {10.1093/BIB/BBR059}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/duVerleM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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