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@article{DBLP:journals/bib/AllenWCGMXX12,
  author       = {Jeffrey D. Allen and
                  Siling Wang and
                  Min Chen and
                  Luc Girard and
                  John D. Minna and
                  Yang Xie and
                  Guanghua Xiao},
  title        = {Probe mapping across multiple microarray platforms},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {547--554},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr076},
  doi          = {10.1093/BIB/BBR076},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/AllenWCGMXX12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Altman12,
  author       = {Russ B. Altman},
  title        = {Editorial: Current progress in Bioinformatics 2012},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {4},
  pages        = {393--394},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs042},
  doi          = {10.1093/BIB/BBS042},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Altman12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BebekKPC12,
  author       = {G{\"{u}}rkan Bebek and
                  Mehmet Koyut{\"{u}}rk and
                  Nathan D. Price and
                  Mark R. Chance},
  title        = {Network biology methods integrating biological data for translational
                  science},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {4},
  pages        = {446--459},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr075},
  doi          = {10.1093/BIB/BBR075},
  timestamp    = {Thu, 03 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BebekKPC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Benitez-PaezCG12,
  author       = {Alfonso Ben{\'{\i}}tez{-}P{\'{a}}ez and
                  Sonia C{\'{a}}rdenas{-}Brito and
                  Andr{\'{e}}s J. Guti{\'{e}}rrez},
  title        = {A practical guide for the computational selection of residues to be
                  experimentally characterized in protein families},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {329--336},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr052},
  doi          = {10.1093/BIB/BBR052},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Benitez-PaezCG12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BerrarF12,
  author       = {Daniel P. Berrar and
                  Peter A. Flach},
  title        = {Caveats and pitfalls of {ROC} analysis in clinical microarray research
                  (and how to avoid them)},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {1},
  pages        = {83--97},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr008},
  doi          = {10.1093/BIB/BBR008},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BerrarF12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Borenstein12,
  author       = {Elhanan Borenstein},
  title        = {Computational systems biology and \emph{in silico} modeling of the
                  human microbiome},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {769--780},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs022},
  doi          = {10.1093/BIB/BBS022},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Borenstein12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BoulesteixBBS12,
  author       = {Anne{-}Laure Boulesteix and
                  Andreas Bender and
                  Justo Lorenzo Bermejo and
                  Carolin Strobl},
  title        = {Random forest Gini importance favours SNPs with large minor allele
                  frequency: impact, sources and recommendations},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {292--304},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr053},
  doi          = {10.1093/BIB/BBR053},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BoulesteixBBS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CapriottiNKB12,
  author       = {Emidio Capriotti and
                  Nathan L. Nehrt and
                  Maricel G. Kann and
                  Yana Bromberg},
  title        = {Bioinformatics for personal genome interpretation},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {4},
  pages        = {495--512},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr070},
  doi          = {10.1093/BIB/BBR070},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/CapriottiNKB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/CollisonHWNSB12,
  author       = {Matthew Collison and
                  Robert P. Hirt and
                  Anil Wipat and
                  Sirintra Nakjang and
                  Philippe Sanseau and
                  James R. Brown},
  title        = {Data mining the human gut microbiota for therapeutic targets},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {751--768},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs002},
  doi          = {10.1093/BIB/BBS002},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/CollisonHWNSB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/DrogeM12,
  author       = {Johannes Dr{\"{o}}ge and
                  Alice Carolyn McHardy},
  title        = {Taxonomic binning of metagenome samples generated by next-generation
                  sequencing technologies},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {646--655},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs031},
  doi          = {10.1093/BIB/BBS031},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/DrogeM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/DurrantSAAMMPVJS12,
  author       = {Caroline Durrant and
                  Morris A. Swertz and
                  Rudi Alberts and
                  Danny Arends and
                  Steffen M{\"{o}}ller and
                  Richard Mott and
                  Pjotr Prins and
                  K. Joeri van der Velde and
                  Ritsert C. Jansen and
                  Klaus Schughart},
  title        = {Bioinformatics tools and database resources for systems genetics analysis
                  in mice - a short review and an evaluation of future needs},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {135--142},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr026},
  doi          = {10.1093/BIB/BBR026},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/DurrantSAAMMPVJS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Dutheil12,
  author       = {Julien Dutheil},
  title        = {Detecting coevolving positions in a molecule: why and how to account
                  for phylogeny},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {228--243},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr048},
  doi          = {10.1093/BIB/BBR048},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Dutheil12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FaroGS12,
  author       = {Alberto Faro and
                  Daniela Giordano and
                  Concetto Spampinato},
  title        = {Combining literature text mining with microarray data: advances for
                  system biology modeling},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {1},
  pages        = {61--82},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr018},
  doi          = {10.1093/BIB/BBR018},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FaroGS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FilippoRFC12,
  author       = {Carlotta De Filippo and
                  Matteo Ramazzotti and
                  Paolo Fontana and
                  Duccio Cavalieri},
  title        = {Bioinformatic approaches for functional annotation and pathway inference
                  in metagenomics data},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {696--710},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs070},
  doi          = {10.1093/BIB/BBS070},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FilippoRFC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FinotelloLFPABFCT12,
  author       = {Francesca Finotello and
                  Enrico Lavezzo and
                  Paolo Fontana and
                  Denis Peruzzo and
                  Alessandro Albiero and
                  Luisa Barzon and
                  Marco Falda and
                  Barbara Di Camillo and
                  Stefano Toppo},
  title        = {Comparative analysis of algorithms for whole-genome assembly of pyrosequencing
                  data},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {269--280},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr063},
  doi          = {10.1093/BIB/BBR063},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FinotelloLFPABFCT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FloresBSZH12,
  author       = {Samuel Flores and
                  Julie Bernauer and
                  Seokmin Shin and
                  Ruhong Zhou and
                  Xuhui Huang},
  title        = {Multiscale modeling of macromolecular biosystems},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {4},
  pages        = {395--405},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr077},
  doi          = {10.1093/BIB/BBR077},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/FloresBSZH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FosterBGM12,
  author       = {James A. Foster and
                  John Bunge and
                  Jack A. Gilbert and
                  Jason H. Moore},
  title        = {Measuring the microbiome: perspectives on advances in DNA-based techniques
                  for exploring microbial life},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {4},
  pages        = {420--429},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr080},
  doi          = {10.1093/BIB/BBR080},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FosterBGM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GuzziMGC12,
  author       = {Pietro Hiram Guzzi and
                  Marco Mina and
                  Concettina Guerra and
                  Mario Cannataro},
  title        = {Semantic similarity analysis of protein data: assessment with biological
                  features and issues},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {569--585},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr066},
  doi          = {10.1093/BIB/BBR066},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GuzziMGC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HahnCGS12,
  author       = {Udo Hahn and
                  Kevin Bretonnel Cohen and
                  Yael Garten and
                  Nigam H. Shah},
  title        = {Mining the pharmacogenomics literature - a survey of the state of
                  the art},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {4},
  pages        = {460--494},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs018},
  doi          = {10.1093/BIB/BBS018},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HahnCGS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangSL12,
  author       = {Norman Huang and
                  Parantu K. Shah and
                  Cheng Li},
  title        = {Lessons from a decade of integrating cancer copy number alterations
                  with gene expression profiles},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {305--316},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr056},
  doi          = {10.1093/BIB/BBR056},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HuangSL12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HuangWYH12,
  author       = {Ting Huang and
                  Jingjing Wang and
                  Weichuan Yu and
                  Zengyou He},
  title        = {Protein inference: a review},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {586--614},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs004},
  doi          = {10.1093/BIB/BBS004},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HuangWYH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HungYHWD12,
  author       = {Jui{-}Hung Hung and
                  Tun{-}Hsiang Yang and
                  Zhenjun Hu and
                  Zhiping Weng and
                  Charles DeLisi},
  title        = {Gene set enrichment analysis: performance evaluation and usage guidelines},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {281--291},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr049},
  doi          = {10.1093/BIB/BBR049},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HungYHWD12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HunterMJMPSH12,
  author       = {Chris I. Hunter and
                  Alex L. Mitchell and
                  Philip Jones and
                  Craig McAnulla and
                  Sebastien Pesseat and
                  Maxim Scheremetjew and
                  Sarah Hunter},
  title        = {Metagenomic analysis: the challenge of the data bonanza},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {743--746},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs020},
  doi          = {10.1093/BIB/BBS020},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/HunterMJMPSH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KawanoOTB12,
  author       = {Shin Kawano and
                  Hiromasa Ono and
                  Toshihisa Takagi and
                  Hidemasa Bono},
  title        = {Tutorial videos of bioinformatics resources: online distribution trial
                  in Japan named TogoTV},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {258--268},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr039},
  doi          = {10.1093/BIB/BBR039},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KawanoOTB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KillcoyneHRDB12,
  author       = {Sarah A. Killcoyne and
                  Jeremy Handcock and
                  Thomas Robinson and
                  Eric W. Deutsch and
                  John Boyle},
  title        = {Interfaces to PeptideAtlas: a case study of standard data access systems},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {615--626},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr067},
  doi          = {10.1093/BIB/BBR067},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KillcoyneHRDB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KoschmiederZTSL12,
  author       = {Andr{\'{e}} Koschmieder and
                  Karin Zimmermann and
                  Silke Tri{\ss}l and
                  Thomas Stoltmann and
                  Ulf Leser},
  title        = {Tools for managing and analyzing microarray data},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {1},
  pages        = {46--60},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr010},
  doi          = {10.1093/BIB/BBR010},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KoschmiederZTSL12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KrzywinskiBJM12,
  author       = {Martin Krzywinski and
                  Inan{\c{c}} Birol and
                  Steven J. M. Jones and
                  Marco A. Marra},
  title        = {Hive plots - rational approach to visualizing networks},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {627--644},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr069},
  doi          = {10.1093/BIB/BBR069},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KrzywinskiBJM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiFNWW12,
  author       = {Weizhong Li and
                  Limin Fu and
                  Beifang Niu and
                  Sitao Wu and
                  John C. Wooley},
  title        = {Ultrafast clustering algorithms for metagenomic sequence analysis},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {656--668},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs035},
  doi          = {10.1093/BIB/BBS035},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiFNWW12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiJLLWLCWLWY12,
  author       = {Xia Li and
                  Wei Jiang and
                  Wei Li and
                  Baofeng Lian and
                  Shuyuan Wang and
                  Mingzhi Liao and
                  Xiaowen Chen and
                  Yanqiu Wang and
                  Yingli Lv and
                  Shiyuan Wang and
                  Lei Yang},
  title        = {Dissection of human MiRNA regulatory influence to subpathway},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {175--186},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr043},
  doi          = {10.1093/BIB/BBR043},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/LiJLLWLCWLWY12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MandeMG12,
  author       = {Sharmila S. Mande and
                  Monzoorul Haque Mohammed and
                  Tarini Shankar Ghosh},
  title        = {Classification of metagenomic sequences: methods and challenges},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {669--681},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs054},
  doi          = {10.1093/BIB/BBS054},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MandeMG12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/McCallA12,
  author       = {Matthew N. McCall and
                  Anthony Almudevar},
  title        = {Affymetrix GeneChip microarray preprocessing for multivariate analyses},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {536--546},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr072},
  doi          = {10.1093/BIB/BBR072},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/McCallA12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MouradSL12,
  author       = {Rapha{\"{e}}l Mourad and
                  Christine Sinoquet and
                  Philippe Leray},
  title        = {Probabilistic graphical models for genetic association studies},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {1},
  pages        = {20--33},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr015},
  doi          = {10.1093/BIB/BBR015},
  timestamp    = {Tue, 30 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MouradSL12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NabhanS12,
  author       = {Ahmed Ragab Nabhan and
                  Indra Neil Sarkar},
  title        = {The impact of taxon sampling on phylogenetic inference: a review of
                  two decades of controversy},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {1},
  pages        = {122--134},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr014},
  doi          = {10.1093/BIB/BBR014},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/NabhanS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Ngom-BruB12,
  author       = {Catherine Ngom{-}Bru and
                  Caroline Barretto},
  title        = {Gut microbiota: methodological aspects to describe taxonomy and functionality},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {747--750},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs019},
  doi          = {10.1093/BIB/BBS019},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Ngom-BruB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NolinDBC12,
  author       = {Marc{-}Alexandre Nolin and
                  Michel Dumontier and
                  Fran{\c{c}}ois Belleau and
                  Jacques Corbeil},
  title        = {Building an {HIV} data mashup using Bio2RDF},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {1},
  pages        = {98--106},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr003},
  doi          = {10.1093/BIB/BBR003},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/NolinDBC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/PrakashT12,
  author       = {Tulika Prakash and
                  Todd D. Taylor},
  title        = {Functional assignment of metagenomic data: challenges and applications},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {711--727},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs033},
  doi          = {10.1093/BIB/BBS033},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/PrakashT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/QuoKPZXWA12,
  author       = {Chang F. Quo and
                  Chanchala Kaddi and
                  John H. Phan and
                  Amin Zollanvari and
                  Mingqing Xu and
                  May D. Wang and
                  Gil Alterovitz},
  title        = {Reverse engineering biomolecular systems using -omic data: challenges,
                  progress and opportunities},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {4},
  pages        = {430--445},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs026},
  doi          = {10.1093/BIB/BBS026},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/QuoKPZXWA12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/RotherPPRWB12,
  author       = {Kristian Rother and
                  Wojciech Potrzebowski and
                  Tomasz Puton and
                  Magdalena Rother and
                  Ewa Wywial and
                  Janusz M. Bujnicki},
  title        = {A toolbox for developing bioinformatics software},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {244--257},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr035},
  doi          = {10.1093/BIB/BBR035},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/RotherPPRWB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SantamariaFCCGLLMAVP12,
  author       = {Monica Santamaria and
                  Bruno Fosso and
                  Arianna Consiglio and
                  Giorgio De Caro and
                  Giorgio Grillo and
                  Flavio Licciulli and
                  Sabino Liuni and
                  Marinella Marzano and
                  Daniel Alonso{-}Alemany and
                  Gabriel Valiente and
                  Graziano Pesole},
  title        = {Reference databases for taxonomic assignment in metagenomics},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {682--695},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs036},
  doi          = {10.1093/BIB/BBS036},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SantamariaFCCGLLMAVP12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SchlatterPWPSBTED12,
  author       = {Rebekka Schlatter and
                  Nicole Philippi and
                  Gaby Wangorsch and
                  Robert Pick and
                  Oliver Sawodny and
                  Christoph Borner and
                  Jens Timmer and
                  Michael Ederer and
                  Thomas Dandekar},
  title        = {Integration of Boolean models exemplified on hepatocyte signal transduction},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {365--376},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr065},
  doi          = {10.1093/BIB/BBR065},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SchlatterPWPSBTED12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SchneiderWBWBRBVGJFNRBJLMJVLAB12,
  author       = {Maria Victoria Schneider and
                  Peter Walter and
                  Marie{-}Claude Blatter and
                  James Watson and
                  Michelle D. Brazas and
                  Kristian Rother and
                  Aidan Budd and
                  Allegra Via and
                  Celia W. G. van Gelder and
                  Joachim Jacob and
                  Pedro L. Fernandes and
                  Tommi H. Nyr{\"{o}}nen and
                  Javier De Las Rivas and
                  Thomas Blicher and
                  Rafael C. Jim{\'{e}}nez and
                  Jane E. Loveland and
                  Jennifer McDowall and
                  Philip Jones and
                  Brendan W. Vaughan and
                  Rodrigo Lopez and
                  Teresa K. Attwood and
                  Catherine Brooksbank},
  title        = {Bioinformatics Training Network {(BTN):} a community resource for
                  bioinformatics trainers},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {383--389},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr064},
  doi          = {10.1093/BIB/BBR064},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SchneiderWBWBRBVGJFNRBJLMJVLAB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShelenkovK12,
  author       = {Andrew A. Shelenkov and
                  Eugene V. Korotkov},
  title        = {{LEPSCAN} - a web server for searching latent periodicity in {DNA}
                  sequences},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {143--149},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr044},
  doi          = {10.1093/BIB/BBR044},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ShelenkovK12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Shen12,
  author       = {Li Shen},
  title        = {Principles of Computational Modeling in NeuroscienceDavid Sterratt,
                  Bruce Graham, Andrew Gillies and David Willshaw},
  journal      = {Briefings Bioinform.},
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  number       = {3},
  pages        = {390--392},
  year         = {2012},
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  doi          = {10.1093/BIB/BBS003},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Shen12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SmildeTHJH12,
  author       = {Age K. Smilde and
                  Marieke E. Timmerman and
                  Margriet M. W. B. Hendriks and
                  Jeroen J. Jansen and
                  Huub C. J. Hoefsloot},
  title        = {Generic framework for high-dimensional fixed-effects {ANOVA}},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {524--535},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr071},
  doi          = {10.1093/BIB/BBR071},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SmildeTHJH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Steen12,
  author       = {Kristel Van Steen},
  title        = {Travelling the world of gene-gene interactions},
  journal      = {Briefings Bioinform.},
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  pages        = {1--19},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr012},
  doi          = {10.1093/BIB/BBR012},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Steen12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SunCHKFWM12,
  author       = {Yijun Sun and
                  Yunpeng Cai and
                  Susan M. Huse and
                  Rob Knight and
                  William G. Farmerie and
                  Xiaoyu Wang and
                  Volker Mai},
  title        = {A large-scale benchmark study of existing algorithms for taxonomy-independent
                  microbial community analysis},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {1},
  pages        = {107--121},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr009},
  doi          = {10.1093/BIB/BBR009},
  timestamp    = {Sun, 28 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SunCHKFWM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TeelingG12,
  author       = {Hanno Teeling and
                  Frank Oliver Gl{\"{o}}ckner},
  title        = {Current opportunities and challenges in microbial metagenome analysis
                  - a bioinformatic perspective},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {728--742},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs039},
  doi          = {10.1093/BIB/BBS039},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/TeelingG12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TeifR12,
  author       = {Vladimir B. Teif and
                  Karsten Rippe},
  title        = {Calculating transcription factor binding maps for chromatin},
  journal      = {Briefings Bioinform.},
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  number       = {2},
  pages        = {187--201},
  year         = {2012},
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  doi          = {10.1093/BIB/BBR037},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/TeifR12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ValienteP12,
  author       = {Gabriel Valiente and
                  Graziano Pesole},
  title        = {Editorial},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {645},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs079},
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  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ValienteP12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangLQWC12,
  author       = {Juan Wang and
                  Zhi{-}xin Li and
                  Chengxiang Qiu and
                  Dong Wang and
                  Qinghua Cui},
  title        = {The relationship between rational drug design and drug side effects},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {377--382},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr061},
  doi          = {10.1093/BIB/BBR061},
  timestamp    = {Mon, 01 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/WangLQWC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangWPW12,
  author       = {Chenguang Wang and
                  Zhong Wang and
                  Daniel R. Prows and
                  Rongling Wu},
  title        = {A computational framework for the inheritance pattern of genomic imprinting
                  for complex traits},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {1},
  pages        = {34--45},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr023},
  doi          = {10.1093/BIB/BBR023},
  timestamp    = {Tue, 14 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WangWPW12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangXWTZWLBW12,
  author       = {Yakun Wang and
                  Meng Xu and
                  Zhong Wang and
                  Ming Tao and
                  Junjia Zhu and
                  Li Wang and
                  Runze Li and
                  Scott A. Berceli and
                  Rongling Wu},
  title        = {How to cluster gene expression dynamics in response to environmental
                  signals},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {162--174},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr032},
  doi          = {10.1093/BIB/BBR032},
  timestamp    = {Tue, 14 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WangXWTZWLBW12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZMR12,
  author       = {Jinlian Wang and
                  Yuji Zhang and
                  Catalin Marian and
                  Habtom W. Ressom},
  title        = {Identification of aberrant pathways and network activities from high-throughput
                  data},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {4},
  pages        = {406--419},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs001},
  doi          = {10.1093/BIB/BBS001},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/WangZMR12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangZZGZZG12,
  author       = {Jing Wang and
                  Xianxiao Zhou and
                  Jing Zhu and
                  Yunyan Gu and
                  Wenyuan Zhao and
                  Jinfeng Zou and
                  Zheng Guo},
  title        = {GO-function: deriving biologically relevant functions from statistically
                  significant functions},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {216--227},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr041},
  doi          = {10.1093/BIB/BBR041},
  timestamp    = {Tue, 12 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WangZZGZZG12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WongBQH12,
  author       = {Elisabeth Wong and
                  Brittany A. Baur and
                  Saad Quader and
                  Chun{-}Hsi Huang},
  title        = {Biological network motif detection: principles and practice},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {202--215},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr033},
  doi          = {10.1093/BIB/BBR033},
  timestamp    = {Fri, 06 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WongBQH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WuC12,
  author       = {Ming Wu and
                  Christina Chan},
  title        = {Learning transcriptional regulation on a genome scale: a theoretical
                  analysis based on gene expression data},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {2},
  pages        = {150--161},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr029},
  doi          = {10.1093/BIB/BBR029},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/WuC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangWC12,
  author       = {Runqing Yang and
                  Xin Wang and
                  Yuehua Cui},
  title        = {Bayesian inference for genomic imprinting underlying developmental
                  characteristics},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {555--568},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr079},
  doi          = {10.1093/BIB/BBR079},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/YangWC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YuLM12,
  author       = {Tao Yu and
                  Jialiang Li and
                  Shuangge Ma},
  title        = {Adjusting confounders in ranking biomarkers: a model-based {ROC} approach},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {5},
  pages        = {513--523},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs008},
  doi          = {10.1093/BIB/BBS008},
  timestamp    = {Mon, 22 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/YuLM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangUMZ12,
  author       = {Lianming Zhang and
                  Keiko Udaka and
                  Hiroshi Mamitsuka and
                  Shanfeng Zhu},
  title        = {Toward more accurate pan-specific MHC-peptide binding prediction:
                  a review of current methods and tools},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {350--364},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr060},
  doi          = {10.1093/BIB/BBR060},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhangUMZ12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhaoTPWGDW12,
  author       = {Xiyang Zhao and
                  Chunfa Tong and
                  Xiaoming Pang and
                  Zhong Wang and
                  Yunqian Guo and
                  Fang Du and
                  Rongling Wu},
  title        = {Functional mapping of ontogeny in flowering plants},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {317--328},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr054},
  doi          = {10.1093/BIB/BBR054},
  timestamp    = {Tue, 14 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ZhaoTPWGDW12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/duVerleM12,
  author       = {David duVerle and
                  Hiroshi Mamitsuka},
  title        = {A review of statistical methods for prediction of proteolytic cleavage},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {3},
  pages        = {337--349},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbr059},
  doi          = {10.1093/BIB/BBR059},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/duVerleM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}