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@article{DBLP:journals/artmed/ChariAGZEGSSMCM23, author = {Shruthi Chari and Prasant Acharya and Daniel M. Gruen and Olivia Zhang and Elif K. Eyig{\"{o}}z and Mohamed F. Ghalwash and Oshani Seneviratne and Fernando J. Suarez Saiz and Pablo Meyer and Prithwish Chakraborty and Deborah L. McGuinness}, title = {Informing clinical assessment by contextualizing post-hoc explanations of risk prediction models in type-2 diabetes}, journal = {Artif. Intell. Medicine}, volume = {137}, pages = {102498}, year = {2023}, url = {https://doi.org/10.1016/j.artmed.2023.102498}, doi = {10.1016/J.ARTMED.2023.102498}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/artmed/ChariAGZEGSSMCM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/taslp/MeyerPKSH23, author = {Julie Meyer and Sebastian Prepelita and Ali Khajeh{-}Saeed and Michael Smirnov and Pablo Hoffmann}, title = {Verification on Head-Related Transfer Functions of a Snowman Model Simulated Using the Finite-Difference Time-Domain Method}, journal = {{IEEE} {ACM} Trans. Audio Speech Lang. Process.}, volume = {31}, pages = {2579--2591}, year = {2023}, url = {https://doi.org/10.1109/TASLP.2023.3291529}, doi = {10.1109/TASLP.2023.3291529}, timestamp = {Sat, 05 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/taslp/MeyerPKSH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/debs/BegoliMMO23, author = {Edmon Begoli and Edmon Meyer and Pablo Moriano and Sean Oesch}, editor = {Valerio Schiavoni and Marcelo Pasin and Bettina Kemme and Etienne Rivi{\`{e}}re}, title = {Poster: Cognitive Cyber - Dynamic, Adaptive Cyber Defense Systems for Massively Distributed, Autonomous, and Ad-hoc Computing Environments}, booktitle = {Proceedings of the 17th {ACM} International Conference on Distributed and Event-based Systems, {DEBS} 2023, Neuchatel, Switzerland, June 27-30, 2023}, pages = {177--179}, publisher = {{ACM}}, year = {2023}, url = {https://doi.org/10.1145/3583678.3603283}, doi = {10.1145/3583678.3603283}, timestamp = {Fri, 07 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/debs/BegoliMMO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ei-hpci/LiuSVHHDBRKFGRC23, author = {Felix Liu and Vanitha Sankaranarayanan and Javier E. Villanueva{-}Meyer and Shawn Hervey{-}Jumper and James Hawkins and Pablo F. Damasceno and Mauro Bisson and Joshua Romero and Thorsten Kurth and Massimiliano Fatica and Eleftherios Garyfallidis and Ariel Rokem and Jason C. Crane and Sharmila Majumdar}, title = {Clinical validation of rapid GPU-enabled {DTI} tractography of the brain}, booktitle = {High Performance Computing for Imaging 2023, San Francisco, CA, USA, January 15-19, 2023}, pages = {1--4}, publisher = {Society for Imaging Science and Technology}, year = {2023}, url = {https://doi.org/10.2352/EI.2023.35.11.HPCI-237}, doi = {10.2352/EI.2023.35.11.HPCI-237}, timestamp = {Fri, 21 Jul 2023 13:58:07 +0200}, biburl = {https://dblp.org/rec/conf/ei-hpci/LiuSVHHDBRKFGRC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2302-05752, author = {Shruthi Chari and Prasant Acharya and Daniel M. Gruen and Olivia Zhang and Elif K. Eyig{\"{o}}z and Mohamed F. Ghalwash and Oshani Seneviratne and Fernando J. Suarez Saiz and Pablo Meyer and Prithwish Chakraborty and Deborah L. McGuinness}, title = {Informing clinical assessment by contextualizing post-hoc explanations of risk prediction models in type-2 diabetes}, journal = {CoRR}, volume = {abs/2302.05752}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2302.05752}, doi = {10.48550/ARXIV.2302.05752}, eprinttype = {arXiv}, eprint = {2302.05752}, timestamp = {Sun, 19 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2302-05752.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2307-15715, author = {Gregor Stiglic and Leon Kopitar and Lucija Gosak and Primoz Kocbek and Zhe He and Prithwish Chakraborty and Pablo Meyer and Jiang Bian}, title = {Improving Primary Healthcare Workflow Using Extreme Summarization of Scientific Literature Based on Generative {AI}}, journal = {CoRR}, volume = {abs/2307.15715}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2307.15715}, doi = {10.48550/ARXIV.2307.15715}, eprinttype = {arXiv}, eprint = {2307.15715}, timestamp = {Thu, 03 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2307-15715.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MorenoFGMMMFFBB22, author = {Pablo A. Moreno and Silvie Fexova and Nancy George and Jonathan R. Manning and Zhichao Miao and Suhaib Mohammed and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Anja F{\"{u}}llgrabe and Yalan Bi and Natassja Bush and Haider Iqbal and Upendra Kumbham and Andrey Solovyev and Lingyun Zhao and Ananth Prakash and David Garc{\'{\i}}a{-}Seisdedos and Deepti Jaiswal Kundu and Shengbo Wang and Mathias Walzer and Laura Clarke and David Osumi{-}Sutherland and Marcela Karey Tello{-}Ruiz and Sunita Kumari and Doreen Ware and Jana Eliasova and Mark J. Arends and Martijn C. Nawijn and Kerstin B. Meyer and Tony Burdett and John C. Marioni and Sarah A. Teichmann and Juan Antonio Vizca{\'{\i}}no and Alvis Brazma and Irene Papatheodorou}, title = {Expression Atlas update: gene and protein expression in multiple species}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {129--140}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab1030}, doi = {10.1093/NAR/GKAB1030}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MorenoFGMMMFFBB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/patterns/DeyCKDGSNSVM22, author = {Sanjoy Dey and Prithwish Chakraborty and Bum Chul Kwon and Amit Dhurandhar and Mohamed F. Ghalwash and Fernando J. Suarez Saiz and Kenney Ng and Daby Sow and Kush R. Varshney and Pablo Meyer}, title = {Human-centered explainability for life sciences, healthcare, and medical informatics}, journal = {Patterns}, volume = {3}, number = {5}, pages = {100493}, year = {2022}, url = {https://doi.org/10.1016/j.patter.2022.100493}, doi = {10.1016/J.PATTER.2022.100493}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/patterns/DeyCKDGSNSVM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2207-02445, author = {Steve Nyemba and Chao Yan and Ziqi Zhang and Amol Rajmane and Pablo Meyer and Prithwish Chakraborty and Bradley A. Malin}, title = {Distillation to Enhance the Portability of Risk Models Across Institutions with Large Patient Claims Database}, journal = {CoRR}, volume = {abs/2207.02445}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2207.02445}, doi = {10.48550/ARXIV.2207.02445}, eprinttype = {arXiv}, eprint = {2207.02445}, timestamp = {Thu, 31 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2207-02445.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sensors/GreiffenbergABB21, author = {Dominic Greiffenberg and Marie Andr{\"{a}} and Rebecca Barten and Anna Bergamaschi and Martin Br{\"{u}}ckner and Paolo Busca and Sabina Chiriotti and Ivan Chsherbakov and Roberto Dinapoli and Pablo Fajardo and Erik Fr{\"{o}}jdh and Shqipe Hasanaj and Pawel Kozlowski and Carlos Lopez Cuenca and Anastassiya Lozinskaya and Markus Meyer and Davide Mezza and Aldo Mozzanica and Sophie Redford and Marie Ruat and Christian Ruder and Bernd Schmitt and Dhanya Thattil and Gemma Tinti and Oleg Tolbanov and Anton Tyazhev and Seraphin Vetter and Andrei Zarubin and Jiaguo Zhang}, title = {Characterization of Chromium Compensated GaAs Sensors with the Charge-Integrating {JUNGFRAU} Readout Chip by Means of a Highly Collimated Pencil Beam}, journal = {Sensors}, volume = {21}, number = {4}, pages = {1550}, year = {2021}, url = {https://doi.org/10.3390/s21041550}, doi = {10.3390/S21041550}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/sensors/GreiffenbergABB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2106-13265, author = {Parthasarathy Suryanarayanan and Prithwish Chakraborty and Piyush Madan and Kibichii Bore and William Ogallo and Rachita Chandra and Mohamed F. Ghalwash and Italo Buleje and Sekou L. Remy and Shilpa Mahatma and Pablo Meyer and Jianying Hu}, title = {Disease Progression Modeling Workbench 360}, journal = {CoRR}, volume = {abs/2106.13265}, year = {2021}, url = {https://arxiv.org/abs/2106.13265}, eprinttype = {arXiv}, eprint = {2106.13265}, timestamp = {Mon, 04 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2106-13265.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2107-02359, author = {Shruthi Chari and Prithwish Chakraborty and Mohamed F. Ghalwash and Oshani Seneviratne and Elif K. Eyig{\"{o}}z and Daniel M. Gruen and Fernando J. Suarez Saiz and Ching{-}Hua Chen and Pablo Meyer Rojas and Deborah L. McGuinness}, title = {Leveraging Clinical Context for User-Centered Explainability: {A} Diabetes Use Case}, journal = {CoRR}, volume = {abs/2107.02359}, year = {2021}, url = {https://arxiv.org/abs/2107.02359}, eprinttype = {arXiv}, eprint = {2107.02359}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2107-02359.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2112-10074, author = {Raghav Mehta and Angelos Filos and Ujjwal Baid and Chiharu Sako and Richard McKinley and Michael Rebsamen and Katrin D{\"{a}}twyler and Raphael Meier and Piotr Radojewski and Gowtham Krishnan Murugesan and Sahil S. Nalawade and Chandan Ganesh and Benjamin C. Wagner and Fang F. Yu and Baowei Fei and Ananth J. Madhuranthakam and Joseph A. Maldjian and Laura Alexandra Daza and Catalina G{\'{o}}mez Caballero and Pablo Arbel{\'{a}}ez and Chengliang Dai and Shuo Wang and Hadrien Raynaud and Yuanhan Mo and Elsa D. Angelini and Yike Guo and Wenjia Bai and Subhashis Banerjee and Linmin Pei and Murat Ak and Sarahi Rosas{-}Gonz{\'{a}}lez and Ilyess Zemmoura and Clovis Tauber and Minh H. Vu and Tufve Nyholm and Tommy L{\"{o}}fstedt and Laura Mora Ballestar and Ver{\'{o}}nica Vilaplana and Hugh McHugh and Gonzalo D. Maso Talou and Alan Wang and Jay B. Patel and Ken Chang and Katharina Hoebel and Mishka Gidwani and Nishanth Thumbavanam Arun and Sharut Gupta and Mehak Aggarwal and Praveer Singh and Elizabeth R. Gerstner and Jayashree Kalpathy{-}Cramer and Nicolas Boutry and Alexis Huard and Lasitha Vidyaratne and Md Monibor Rahman and Khan M. Iftekharuddin and Joseph Chazalon and {\'{E}}lodie Puybareau and Guillaume Tochon and Jun Ma and Mariano Cabezas and Xavier Llad{\'{o}} and Arnau Oliver and Liliana Valencia and Sergi Valverde and Mehdi Amian and Mohammadreza Soltaninejad and Andriy Myronenko and Ali Hatamizadeh and Xue Feng and Quan Dou and Nicholas J. Tustison and Craig H. Meyer and Nisarg A. Shah and Sanjay N. Talbar and Marc{-}Andr{\'{e}} Weber and Abhishek Mahajan and Andr{\'{a}}s Jakab and Roland Wiest and Hassan M. Fathallah{-}Shaykh and Arash Nazeri and Mikhail Milchenko and Daniel S. Marcus and Aikaterini Kotrotsou and Rivka Colen and John B. Freymann and Justin S. Kirby and Christos Davatzikos and Bjoern H. Menze and Spyridon Bakas and Yarin Gal and Tal Arbel}, title = {QU-BraTS: {MICCAI} BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking Results}, journal = {CoRR}, volume = {abs/2112.10074}, year = {2021}, url = {https://arxiv.org/abs/2112.10074}, eprinttype = {arXiv}, eprint = {2112.10074}, timestamp = {Wed, 28 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2112-10074.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PapatheodorouMM20, author = {Irene Papatheodorou and Pablo A. Moreno and Jonathan R. Manning and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Nancy George and Silvie Fexova and Nuno A. Fonseca and Anja F{\"{u}}llgrabe and Matthew Green and Ni Huang and Laura Huerta and Haider Iqbal and Monica Jianu and Suhaib Mohammed and Lingyun Zhao and Andrew F. Jarnuczak and Simon Jupp and John C. Marioni and Kerstin B. Meyer and Robert Petryszak and Cesar Augusto Prada Medina and Carlos Talavera{-}L{\'{o}}pez and Sarah A. Teichmann and Juan Antonio Vizca{\'{\i}}no and Alvis Brazma}, title = {Expression Atlas update: from tissues to single cells}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D77--D83}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz947}, doi = {10.1093/NAR/GKZ947}, timestamp = {Wed, 24 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PapatheodorouMM20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tjs/MorinigoGRGMG20, author = {Jos{\'{e}} A. Mor{\'{\i}}{\~{n}}igo and Pablo Garc{\'{\i}}a{-}Muller and Antonio J. Rubio{-}Montero and Antonio G{\'{o}}mez{-}Iglesias and Norbert Meyer and Rafael Mayo Garc{\'{\i}}a}, title = {Performance drop at executing communication-intensive parallel algorithms}, journal = {J. Supercomput.}, volume = {76}, number = {9}, pages = {6834--6859}, year = {2020}, url = {https://doi.org/10.1007/s11227-019-03142-8}, doi = {10.1007/S11227-019-03142-8}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tjs/MorinigoGRGMG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/carla/MorinigoGRGMG18, author = {Jos{\'{e}} A. Mor{\'{\i}}{\~{n}}igo and Pablo Garc{\'{\i}}a{-}Muller and Antonio J. Rubio{-}Montero and Antonio G{\'{o}}mez{-}Iglesias and Norbert Meyer and Rafael Mayo{-}Garc{\'{\i}}a}, editor = {Esteban Meneses and Harold Castro and Carlos Jaime Barrios Hern{\'{a}}ndez and Ra{\'{u}}l Ramos{-}Poll{\'{a}}n}, title = {Benchmarking {LAMMPS:} Sensitivity to Task Location Under CPU-Based Weak-Scaling}, booktitle = {High Performance Computing - 5th Latin American Conference, {CARLA} 2018, Bucaramanga, Colombia, September 26-28, 2018, Revised Selected Papers}, series = {Communications in Computer and Information Science}, volume = {979}, pages = {224--238}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-16205-4\_17}, doi = {10.1007/978-3-030-16205-4\_17}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/carla/MorinigoGRGMG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BiehlSBBDMNRZH15, author = {Michael Biehl and Peter J. Sadowski and Gyan Bhanot and Erhan Bilal and Adel Dayarian and Pablo Meyer and Raquel Norel and Kahn Rhrissorrakrai and Michael D. Zeller and Sahand Hormoz}, title = {Inter-species prediction of protein phosphorylation in the sbv {IMPROVER} species translation challenge}, journal = {Bioinform.}, volume = {31}, number = {4}, pages = {453--461}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu407}, doi = {10.1093/BIOINFORMATICS/BTU407}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BiehlSBBDMNRZH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BilalSPMMBRMNIBRPHSAP15, author = {Erhan Bilal and Theodore Sakellaropoulos and Challenge Participants and Ioannis N. Melas and Dimitris E. Messinis and Vincenzo Belcastro and Kahn Rhrissorrakrai and Pablo Meyer and Raquel Norel and Anita Iskandar and Elise Blaese and John Jeremy Rice and Manuel C. Peitsch and Julia Hoeng and Gustavo Stolovitzky and Leonidas G. Alexopoulos and Carine Poussin}, title = {A crowd-sourcing approach for the construction of species-specific cell signaling networks}, journal = {Bioinform.}, volume = {31}, number = {4}, pages = {484--491}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu659}, doi = {10.1093/BIOINFORMATICS/BTU659}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BilalSPMMBRMNIBRPHSAP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DayarianRWBBHMNRBLT15, author = {Adel Dayarian and Roberto Romero and Zhiming Wang and Michael Biehl and Erhan Bilal and Sahand Hormoz and Pablo Meyer and Raquel Norel and Kahn Rhrissorrakrai and Gyan Bhanot and Feng Luo and Adi L. Tarca}, title = {Predicting protein phosphorylation from gene expression: top methods from the {IMPROVER} Species Translation Challenge}, journal = {Bioinform.}, volume = {31}, number = {4}, pages = {462--470}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu490}, doi = {10.1093/BIOINFORMATICS/BTU490}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DayarianRWBBHMNRBLT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HafemeisterRBMNRBT15, author = {Christoph Hafemeister and Roberto Romero and Erhan Bilal and Pablo Meyer and Raquel Norel and Kahn Rhrissorrakrai and Richard Bonneau and Adi L. Tarca}, title = {Inter-species pathway perturbation prediction via data-driven detection of functional homology}, journal = {Bioinform.}, volume = {31}, number = {4}, pages = {501--508}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu570}, doi = {10.1093/BIOINFORMATICS/BTU570}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HafemeisterRBMNRBT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HoengPMJ15, author = {Julia Hoeng and Manuel C. Peitsch and Pablo Meyer and Igor Jurisica}, title = {Where are we at regarding species translation? {A} review of the sbv {IMPROVER} challenge}, journal = {Bioinform.}, volume = {31}, number = {4}, pages = {451--452}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv065}, doi = {10.1093/BIOINFORMATICS/BTV065}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HoengPMJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HormozBBBMNRD15, author = {Sahand Hormoz and Gyan Bhanot and Michael Biehl and Erhan Bilal and Pablo Meyer and Raquel Norel and Kahn Rhrissorrakrai and Adel Dayarian}, title = {Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets}, journal = {Bioinform.}, volume = {31}, number = {4}, pages = {492--500}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu569}, doi = {10.1093/BIOINFORMATICS/BTU569}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HormozBBBMNRD15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RhrissorrakraiBBNPMDIARPSMH15, author = {Kahn Rhrissorrakrai and Vincenzo Belcastro and Erhan Bilal and Raquel Norel and Carine Poussin and Carole Mathis and R{\'{e}}mi H. J. Dulize and Nikolai V. Ivanov and Leonidas G. Alexopoulos and John Jeremy Rice and Manuel C. Peitsch and Gustavo Stolovitzky and Pablo Meyer and Julia Hoeng}, title = {Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv {IMPROVER} Species Translation Challenge}, journal = {Bioinform.}, volume = {31}, number = {4}, pages = {471--483}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu611}, doi = {10.1093/BIOINFORMATICS/BTU611}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RhrissorrakraiBBNPMDIARPSMH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/GiffordM15, author = {Stacey M. Gifford and Pablo Meyer}, title = {Enzyme function is regulated by its localization}, journal = {Comput. Biol. Chem.}, volume = {59}, pages = {113--122}, year = {2015}, url = {https://doi.org/10.1016/j.compbiolchem.2015.08.004}, doi = {10.1016/J.COMPBIOLCHEM.2015.08.004}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/candc/GiffordM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/Hernandez-Lemus15, author = {Enrique Hern{\'{a}}ndez{-}Lemus and Wentian Li and Pablo Meyer}, title = {Advances in systems biology - New trends and perspectives}, journal = {Comput. Biol. Chem.}, volume = {59}, pages = {1--2}, year = {2015}, url = {https://doi.org/10.1016/j.compbiolchem.2015.09.001}, doi = {10.1016/J.COMPBIOLCHEM.2015.09.001}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/candc/Hernandez-Lemus15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KarrWZRSTKWABHK15, author = {Jonathan R. Karr and Alex H. Williams and Jeremy D. Zucker and Andreas Raue and Bernhard Steiert and Jens Timmer and Clemens Kreutz and Simon Wilkinson and Brandon A. Allgood and Brian M. Bot and Bruce R. Hoff and Michael R. Kellen and Markus W. Covert and Gustavo A. Stolovitzky and Pablo Meyer}, title = {Summary of the {DREAM8} Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models}, journal = {PLoS Comput. Biol.}, volume = {11}, number = {5}, year = {2015}, url = {https://doi.org/10.1371/journal.pcbi.1004096}, doi = {10.1371/JOURNAL.PCBI.1004096}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/KarrWZRSTKWABHK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/f1000research/CokelaerBBBBNEGHHKKMMNPPW15, author = {Thomas Cokelaer and Mukesh Bansal and Christopher Bare and Erhan Bilal and Brian M. Bot and Elias Chaibub Neto and Federica Eduati and Mehmet G{\"{o}}nen and Steven M. Hill and Bruce R. Hoff and Jonathan R. Karr and Robert K{\"{u}}ffner and Michael P. Menden and Pablo Meyer and Raquel Norel and Abhishek Pratap and Robert J. Prill and Matthew T. Weirauch and James C. Costello and Gustavo Stolovitzky and Julio Saez{-}Rodriguez}, title = {DREAMTools: a Python package for scoring collaborative challenges}, journal = {F1000Research}, volume = {4}, pages = {1030}, year = {2015}, url = {https://doi.org/10.12688/f1000research.7118.1}, doi = {10.12688/F1000RESEARCH.7118.1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/f1000research/CokelaerBBBBNEGHHKKMMNPPW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MeyerCCKLTLBKRSTBSSS14, author = {Pablo Meyer and Thomas Cokelaer and Deepak Chandran and Kyung Hyuk Kim and Po{-}Ru Loh and George Tucker and Mark Lipson and Bonnie Berger and Clemens Kreutz and Andreas Raue and Bernhard Steiert and Jens Timmer and Erhan Bilal and Herbert M. Sauro and Gustavo Stolovitzky and Julio Saez{-}Rodriguez}, title = {Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {13}, year = {2014}, url = {https://doi.org/10.1186/1752-0509-8-13}, doi = {10.1186/1752-0509-8-13}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCCKLTLBKRSTBSSS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MeyerCS14, author = {Pablo Meyer and Guillermo A. Cecchi and Gustavo Stolovitzky}, title = {Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {131}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0131-1}, doi = {10.1186/S12918-014-0131-1}, timestamp = {Fri, 01 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/SuridjanRVSSSWMHM14, author = {I. Suridjan and Pablo Rusjan and Aristotle N. Voineskos and T. Selvanathan and Elaine Setiawan and Antonio P. Strafella and Alan A. Wilson and Jeffrey H. Meyer and Sylvain Houle and Romina Mizrahi}, title = {Neuroinflammation in healthy aging: {A} {PET} study using a novel Translocator Protein 18 kDa {(TSPO)} radioligand, [\({}^{\mbox{18}}\)F]-FEPPA}, journal = {NeuroImage}, volume = {84}, pages = {868--875}, year = {2014}, url = {https://doi.org/10.1016/j.neuroimage.2013.09.021}, doi = {10.1016/J.NEUROIMAGE.2013.09.021}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/SuridjanRVSSSWMHM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13, author = {Adi L. Tarca and Mario Lauria and Michael Unger and Erhan Bilal and St{\'{e}}phanie Bou{\'{e}} and Kushal Kumar Dey and Julia Hoeng and Heinz Koeppl and Florian Martin and Pablo Meyer and Preetam Nandy and Raquel Norel and Manuel C. Peitsch and John Jeremy Rice and Roberto Romero and Gustavo Stolovitzky and Marja Talikka and Yang Xiang and Christoph Zechner and Improver Dsc Collaborators}, title = {Strengths and limitations of microarray-based phenotype prediction: lessons learned from the {IMPROVER} Diagnostic Signature Challenge}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2892--2899}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt492}, doi = {10.1093/BIOINFORMATICS/BTT492}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MeyerHRNSSBCRPS12, author = {Pablo Meyer and Julia Hoeng and John Jeremy Rice and Raquel Norel and J{\"{o}}rg Sprengel and Katrin Stolle and Thomas Bonk and Stephanie Corthesy and Ajay K. Royyuru and Manuel C. Peitsch and Gustavo Stolovitzky}, title = {Industrial methodology for process verification in research {(IMPROVER):} toward systems biology verification}, journal = {Bioinform.}, volume = {28}, number = {9}, pages = {1193--1201}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts116}, doi = {10.1093/BIOINFORMATICS/BTS116}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerHRNSSBCRPS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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