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@phdthesis{DBLP:phd/basesearch/Mandwal24, author = {Ayush Kumar Mandwal}, title = {Modeling and data analysis of emergent properties in different biological systems}, school = {University of Calgary, Alberta, Canada}, year = {2024}, url = {https://hdl.handle.net/1880/117984}, timestamp = {Wed, 13 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Mandwal24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/air/NssibiMCMK24, author = {Maha Nssibi and Ghaith Manita and Amit Chhabra and Seyedali Mirjalili and Ouajdi Korbaa}, title = {Gene selection for high dimensional biological datasets using hybrid island binary artificial bee colony with chaos game optimization}, journal = {Artif. Intell. Rev.}, volume = {57}, number = {3}, pages = {51}, year = {2024}, url = {https://doi.org/10.1007/s10462-023-10675-1}, doi = {10.1007/S10462-023-10675-1}, timestamp = {Fri, 08 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/air/NssibiMCMK24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/AragonesPSCBSHC24, author = {David G. Aragones and Miguel Palomino{-}Segura and Jon Sicilia and Georgiana Crainiciuc and Iv{\'{a}}n Ballesteros and F{\'{a}}tima S{\'{a}}nchez{-}Cabo and Andr{\'{e}}s Hidalgo and Gabriel Fern{\'{a}}ndez Calvo}, title = {Variable selection for nonlinear dimensionality reduction of biological datasets through bootstrapping of correlation networks}, journal = {Comput. Biol. Medicine}, volume = {168}, pages = {107827}, year = {2024}, url = {https://doi.org/10.1016/j.compbiomed.2023.107827}, doi = {10.1016/J.COMPBIOMED.2023.107827}, timestamp = {Fri, 08 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cbm/AragonesPSCBSHC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cce/Oh24, author = {Tae Hoon Oh}, title = {Quantitative comparison of reinforcement learning and data-driven model predictive control for chemical and biological processes}, journal = {Comput. Chem. Eng.}, volume = {181}, pages = {108558}, year = {2024}, url = {https://doi.org/10.1016/j.compchemeng.2023.108558}, doi = {10.1016/J.COMPCHEMENG.2023.108558}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cce/Oh24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/SealSHGSBC24, author = {Srijit Seal and Ola Spjuth and Layla Hosseini{-}Gerami and Miguel Garc{\'{\i}}a{-}Orteg{\'{o}}n and Shantanu Singh and Andreas Bender and Anne E. Carpenter}, title = {Insights into Drug Cardiotoxicity from Biological and Chemical Data: The First Public Classifiers for {FDA} Drug-Induced Cardiotoxicity Rank}, journal = {J. Chem. Inf. Model.}, volume = {64}, number = {4}, pages = {1172--1186}, year = {2024}, url = {https://doi.org/10.1021/acs.jcim.3c01834}, doi = {10.1021/ACS.JCIM.3C01834}, timestamp = {Mon, 15 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/SealSHGSBC24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wacv/WenVFEAW24, author = {Junhan Wen and Camiel R. Verschoor and Chengming Feng and Irina{-}Mona Epure and Thomas Abeel and Mathijs de Weerdt}, title = {The Growing Strawberries Dataset: Tracking Multiple Objects with Biological Development over an Extended Period}, booktitle = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV} 2024, Waikoloa, HI, USA, January 3-8, 2024}, pages = {7089--7099}, publisher = {{IEEE}}, year = {2024}, url = {https://doi.org/10.1109/WACV57701.2024.00695}, doi = {10.1109/WACV57701.2024.00695}, timestamp = {Wed, 17 Apr 2024 07:41:22 +0200}, biburl = {https://dblp.org/rec/conf/wacv/WenVFEAW24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2401-16664, author = {Aleksandar Poleksic}, title = {Fast Dual-Regularized Autoencoder for Sparse Biological Data}, journal = {CoRR}, volume = {abs/2401.16664}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2401.16664}, doi = {10.48550/ARXIV.2401.16664}, eprinttype = {arXiv}, eprint = {2401.16664}, timestamp = {Tue, 06 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2401-16664.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2402-00293, author = {Takuma Yagi and Misaki Ohashi and Yifei Huang and Ryosuke Furuta and Shungo Adachi and Toutai Mitsuyama and Yoichi Sato}, title = {FineBio: {A} Fine-Grained Video Dataset of Biological Experiments with Hierarchical Annotation}, journal = {CoRR}, volume = {abs/2402.00293}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2402.00293}, doi = {10.48550/ARXIV.2402.00293}, eprinttype = {arXiv}, eprint = {2402.00293}, timestamp = {Fri, 09 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2402-00293.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2402-03319, author = {Ivan S. Maksymov}, title = {Physical Reservoir Computing Enabled by Solitary Waves and Biologically-Inspired Nonlinear Transformation of Input Data}, journal = {CoRR}, volume = {abs/2402.03319}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2402.03319}, doi = {10.48550/ARXIV.2402.03319}, eprinttype = {arXiv}, eprint = {2402.03319}, timestamp = {Mon, 12 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2402-03319.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2402-04912, author = {Dingfan Chen and Marie Oestreich and Tejumade Afonja and Raouf Kerkouche and Matthias Becker and Mario Fritz}, title = {Towards Biologically Plausible and Private Gene Expression Data Generation}, journal = {CoRR}, volume = {abs/2402.04912}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2402.04912}, doi = {10.48550/ARXIV.2402.04912}, eprinttype = {arXiv}, eprint = {2402.04912}, timestamp = {Wed, 14 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2402-04912.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2402-17572, author = {Michiel Stock and Dimitri Boeckaerts and Pieter Dewulf and Steff Taelman and Maxime Van Haeverbeke and Wim Van Criekinge and Bernard De Baets}, title = {Hyperdimensional computing: a fast, robust and interpretable paradigm for biological data}, journal = {CoRR}, volume = {abs/2402.17572}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2402.17572}, doi = {10.48550/ARXIV.2402.17572}, eprinttype = {arXiv}, eprint = {2402.17572}, timestamp = {Mon, 25 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2402-17572.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Mubeen23, author = {Sarah Mubeen}, title = {Contextualizing and interpreting biological data with pathway knowledge and network algorithms}, school = {University of Bonn, Germany}, year = {2023}, url = {https://hdl.handle.net/20.500.11811/10617}, timestamp = {Wed, 13 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Mubeen23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Ranek23, author = {Jolene Ranek}, title = {Resolving Biological Trajectories in Single-cell Data using Feature Selection and Multi-modal Integration}, school = {University of North Carolina, Chapel Hill, {USA}}, year = {2023}, url = {https://doi.org/10.17615/md66-m714}, doi = {10.17615/MD66-M714}, timestamp = {Sat, 01 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Ranek23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/Simon23, author = {Franck Simon}, title = {D{\'{e}}couverte causale sur des jeux de donn{\'{e}}es classiques et temporels. Application {\`{a}} des mod{\`{e}}les biologiques. (Causal discovery on classical and temporal datasets. Application to biological models)}, school = {Sorbonne University, Paris, France}, year = {2023}, url = {https://tel.archives-ouvertes.fr/tel-04472806}, timestamp = {Sat, 23 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/hal/Simon23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/tr/Guvenilir23, author = {Heval Atas G{\"{u}}venilir}, title = {Integration and analysis of biological data for computational drug discovery ({\.{I}}{\c{s}}lemsel ila{\c{c}} ke{\c{s}}fi i{\c{c}}in biyolojik verinin entegrasyonu ve analizi)}, school = {Middle East Technical University, Turkey}, year = {2023}, url = {https://tez.yok.gov.tr/UlusalTezMerkezi/tezDetay.jsp?id=bIZ3X4ByqJioBXOnNaxLPg\&no=JjxzAiJYGqf\_y5cJmThkHw}, timestamp = {Sun, 19 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/tr/Guvenilir23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/us/Huang23, author = {Xingfan Huang}, title = {Computational methods for analyzing high-dimensional datasets derived from molecular profiling of biological systems}, school = {University of Washington, {USA}}, year = {2023}, url = {http://hdl.handle.net/1773/49882}, timestamp = {Mon, 17 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/us/Huang23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/access/ZenboutBMA23, author = {Imene Zenbout and Abdelkrim Bouramoul and Souham Meshoul and Mounira Amrane}, title = {Efficient Bioinspired Feature Selection and Machine Learning Based Framework Using Omics Data and Biological Knowledge Data Bases in Cancer Clinical Endpoint Prediction}, journal = {{IEEE} Access}, volume = {11}, pages = {2674--2699}, year = {2023}, url = {https://doi.org/10.1109/ACCESS.2023.3234294}, doi = {10.1109/ACCESS.2023.3234294}, timestamp = {Tue, 31 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/access/ZenboutBMA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BaoCZSSL23, author = {Jingxuan Bao and Changgee Chang and Qiyiwen Zhang and Andrew J. Saykin and Li Shen and Qi Long}, title = {Integrative analysis of multi-omics and imaging data with incorporation of biological information via structural Bayesian factor analysis}, journal = {Briefings Bioinform.}, volume = {24}, number = {2}, year = {2023}, url = {https://doi.org/10.1093/bib/bbad073}, doi = {10.1093/BIB/BBAD073}, timestamp = {Mon, 01 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BaoCZSSL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KobetsUGDMGSRK23, author = {Victoria A Kobets and Sergey V. Ulianov and Aleksandra A. Galitsyna and Semen A. Doronin and Elena A. Mikhaleva and Mikhail S. Gelfand and Yuri Y. Shevelyov and Sergey V. Razin and Ekaterina E. Khrameeva}, title = {HiConfidence: a novel approach uncovering the biological signal in Hi-C data affected by technical biases}, journal = {Briefings Bioinform.}, volume = {24}, number = {2}, year = {2023}, url = {https://doi.org/10.1093/bib/bbad044}, doi = {10.1093/BIB/BBAD044}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/KobetsUGDMGSRK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ScottBoyerDBOPPD23, author = {Marie{-}Pier Scott{-}Boyer and Pascal Dufour and Fran{\c{c}}ois Belleau and R{\'{e}}gis Ongaro{-}Carcy and Cl{\'{e}}ment Plessis and Olivier P{\'{e}}rin and Arnaud Droit}, title = {Use of Elasticsearch-based business intelligence tools for integration and visualization of biological data}, journal = {Briefings Bioinform.}, volume = {24}, number = {6}, year = {2023}, url = {https://doi.org/10.1093/bib/bbad348}, doi = {10.1093/BIB/BBAD348}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ScottBoyerDBOPPD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bigdatasociety/Lockhart23, author = {Jeffrey W. Lockhart}, title = {Because the machine can discriminate: How machine learning serves and transforms biological explanations of human difference}, journal = {Big Data Soc.}, volume = {10}, number = {1}, pages = {205395172311550}, year = {2023}, url = {https://doi.org/10.1177/20539517231155060}, doi = {10.1177/20539517231155060}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bigdatasociety/Lockhart23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/RaboneHJSG23, author = {Muriel Rabone and Tammy Horton and Daniel O. B. Jones and Erik Simon{-}Lled{\'{o}} and Adrian G. Glover}, title = {A review of the International Seabed Authority database DeepData from a biological perspective: challenges and opportunities in the {UN} Ocean Decade}, journal = {Database J. Biol. Databases Curation}, volume = {2023}, year = {2023}, url = {https://doi.org/10.1093/database/baad013}, doi = {10.1093/DATABASE/BAAD013}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/RaboneHJSG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/ZengHCLWYM23, author = {Zhengpeng Zeng and Jiamin Hu and Miyuan Cao and Bingbing Li and Xiting Wang and Feng Yu and Longfei Mao}, title = {MantaID: a machine learning-based tool to automate the identification of biological database IDs}, journal = {Database J. Biol. Databases Curation}, volume = {2023}, year = {2023}, url = {https://doi.org/10.1093/database/baad028}, doi = {10.1093/DATABASE/BAAD028}, timestamp = {Sun, 14 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/ZengHCLWYM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangLHYFV23, author = {Ruogu Wang and Alex A. Lemus and Colin M. Henneberry and Yiming Ying and Yunlong Feng and Alex M. Valm}, title = {Unmixing biological fluorescence image data with sparse and low-rank Poisson regression}, journal = {Bioinform.}, volume = {39}, number = {4}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad159}, doi = {10.1093/BIOINFORMATICS/BTAD159}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangLHYFV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DaneshvarMO23, author = {Negar Hossein{-}Nezhad Daneshvar and Yosef Masoudi{-}Sobhanzadeh and Yadollah Omidi}, title = {A voting-based machine learning approach for classifying biological and clinical datasets}, journal = {{BMC} Bioinform.}, volume = {24}, number = {1}, pages = {140}, year = {2023}, url = {https://doi.org/10.1186/s12859-023-05274-4}, doi = {10.1186/S12859-023-05274-4}, timestamp = {Thu, 20 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DaneshvarMO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WysockaWZLF23, author = {Magdalena Wysocka and Oskar Wysocki and Marie Zufferey and D{\'{o}}nal Landers and Andr{\'{e}} Freitas}, title = {A systematic review of biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data}, journal = {{BMC} Bioinform.}, volume = {24}, number = {1}, pages = {198}, year = {2023}, url = {https://doi.org/10.1186/s12859-023-05262-8}, doi = {10.1186/S12859-023-05262-8}, timestamp = {Sat, 27 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WysockaWZLF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/RasoolHJCQ23, author = {Abdur Rasool and Jingwei Hong and Qingshan Jiang and Hui Chen and Qiang Qu}, title = {{BO-DNA:} Biologically optimized encoding model for a highly-reliable {DNA} data storage}, journal = {Comput. Biol. Medicine}, volume = {165}, pages = {107404}, year = {2023}, url = {https://doi.org/10.1016/j.compbiomed.2023.107404}, doi = {10.1016/J.COMPBIOMED.2023.107404}, timestamp = {Wed, 01 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cbm/RasoolHJCQ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/crossroads/Ge23, author = {Xinzhou Ge}, title = {Enhancing Rigor in Computational Methods for Biological Data Analysis}, journal = {{XRDS}}, volume = {30}, number = {2}, pages = {34--37}, year = {2023}, url = {https://doi.org/10.1145/3637463}, doi = {10.1145/3637463}, timestamp = {Thu, 29 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/crossroads/Ge23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cssc/ZhongCH23, author = {Yi Zhong and Prabhakar Chalise and Jianghua He}, title = {Nested cross-validation with ensemble feature selection and classification model for high-dimensional biological data}, journal = {Commun. Stat. Simul. Comput.}, volume = {52}, number = {1}, pages = {110--125}, year = {2023}, url = {https://doi.org/10.1080/03610918.2020.1850790}, doi = {10.1080/03610918.2020.1850790}, timestamp = {Mon, 20 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cssc/ZhongCH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fbinf/LiMPMLD23, author = {Wanxin Li and Jules Mirone and Ashok Prasad and Nina Miolane and Carine Legrand and Khanh Dao Duc}, title = {Orthogonal outlier detection and dimension estimation for improved {MDS} embedding of biological datasets}, journal = {Frontiers Bioinform.}, volume = {3}, year = {2023}, url = {https://doi.org/10.3389/fbinf.2023.1211819}, doi = {10.3389/FBINF.2023.1211819}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fbinf/LiMPMLD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jamia/SouzaWCPCMF23, author = {Raissa Souza and Matthias Wilms and Milton Camacho and G. Bruce Pike and Richard Camicioli and Oury Monchi and Nils D. Forkert}, title = {Image-encoded biological and non-biological variables may be used as shortcuts in deep learning models trained on multisite neuroimaging data}, journal = {J. Am. Medical Informatics Assoc.}, volume = {30}, number = {12}, pages = {1925--1933}, year = {2023}, url = {https://doi.org/10.1093/jamia/ocad171}, doi = {10.1093/JAMIA/OCAD171}, timestamp = {Sun, 10 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jamia/SouzaWCPCMF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/HuCWYC23, author = {Fuyan Hu and Bifeng Chen and Qing Wang and Zhiyuan Yang and Man Chu}, title = {Multi-omics data analysis reveals the biological implications of alternative splicing events in lung adenocarcinoma}, journal = {J. Bioinform. Comput. Biol.}, volume = {21}, number = {4}, pages = {2350020:1--2350020:21}, year = {2023}, url = {https://doi.org/10.1142/S0219720023500208}, doi = {10.1142/S0219720023500208}, timestamp = {Tue, 28 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbcb/HuCWYC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/GalgonekV23, author = {Jakub Galgonek and Jir{\'{\i}} Vondr{\'{a}}sek}, title = {A comparison of approaches to accessing existing biological and chemical relational databases via {SPARQL}}, journal = {J. Cheminformatics}, volume = {15}, number = {1}, pages = {61}, year = {2023}, url = {https://doi.org/10.1186/s13321-023-00729-5}, doi = {10.1186/S13321-023-00729-5}, timestamp = {Sun, 25 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/GalgonekV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jise/LinC23, author = {Hung{-}Yi Lin and Rong{-}Chang Chen}, title = {Heuristic Feature Selection with Classification Efficiency Using Soft Cluster Analysis for Biological Datasets}, journal = {J. Inf. Sci. Eng.}, volume = {39}, number = {4}, pages = {951--973}, year = {2023}, url = {http://jise.iis.sinica.edu.tw/JISESearch/pages/View/PaperView.jsf?keyId=193\_2608}, timestamp = {Wed, 09 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jise/LinC23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ml/KaragiannakiGLPT23, author = {Ioulia Karagiannaki and Krystallia Gourlia and Vincenzo Lagani and Yannis Pantazis and Ioannis Tsamardinos}, title = {Learning biologically-interpretable latent representations for gene expression data}, journal = {Mach. Learn.}, volume = {112}, number = {11}, pages = {4257--4287}, year = {2023}, url = {https://doi.org/10.1007/s10994-022-06158-z}, doi = {10.1007/S10994-022-06158-Z}, timestamp = {Thu, 09 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ml/KaragiannakiGLPT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ChareshneuMIRHCVBS23, author = {Aliaksei Chareshneu and Adam Midlik and Crina{-}Maria Ionescu and Alexander S. Rose and Vladim{\'{\i}}r Horsk{\'{y}} and Alessio Cantara and Radka Svobodov{\'{a}} Varekov{\'{a}} and Karel Berka and David Sehnal}, title = {Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{W1}}, pages = {326--330}, year = {2023}, url = {https://doi.org/10.1093/nar/gkad411}, doi = {10.1093/NAR/GKAD411}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/ChareshneuMIRHCVBS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HochBBCEFGIKKMMWWYY23, author = {Jeffrey C. Hoch and Kumaran Baskaran and Harrison Burr and John Chin and Hamid R. Eghbalnia and Toshimichi Fujiwara and Michael R. Gryk and Takeshi Iwata and Chojiro Kojima and Genji Kurisu and Dimitri Maziuk and Yohei Miyanoiri and Jonathan R. Wedell and Colin Wilburn and Hongyang Yao and Masashi Yokochi}, title = {Biological Magnetic Resonance Data Bank}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{D1}}, pages = {368--376}, year = {2023}, url = {https://doi.org/10.1093/nar/gkac1050}, doi = {10.1093/NAR/GKAC1050}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/HochBBCEFGIKKMMWWYY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/YangWHWWLWXZYNYYY23, author = {Zhiquan Yang and Jing Wang and Yiming Huang and Shengbo Wang and Lulu Wei and Dongxu Liu and Yonglin Weng and Jinhai Xiang and Qiang Zhu and Zhaoen Yang and Xinhui Nie and Yu Yu and Zuoren Yang and Qing{-}Yong Yang}, title = {CottonMD: a multi-omics database for cotton biological study}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{D1}}, pages = {1446--1456}, year = {2023}, url = {https://doi.org/10.1093/nar/gkac863}, doi = {10.1093/NAR/GKAC863}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/YangWHWWLWXZYNYYY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nca/MafarjaTTCTHE23, author = {Majdi M. Mafarja and Thaer Thaher and Jingwei Too and Hamouda Chantar and Hamza Turabieh and Essam H. Houssein and Marwa M. Emam}, title = {An Efficient High-dimensional Feature Selection Approach Driven By Enhanced Multi-strategy Grey Wolf Optimizer for Biological Data Classification}, journal = {Neural Comput. Appl.}, volume = {35}, number = {2}, pages = {1749--1775}, year = {2023}, url = {https://doi.org/10.1007/s00521-022-07836-8}, doi = {10.1007/S00521-022-07836-8}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nca/MafarjaTTCTHE23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pc/ZhangHCLG23, author = {Hao Zhang and Zhiyi Huang and Yawen Chen and Jianguo Liang and Xiran Gao}, title = {{ESA:} An efficient sequence alignment algorithm for biological database search on Sunway TaihuLight}, journal = {Parallel Comput.}, volume = {117}, pages = {103043}, year = {2023}, url = {https://doi.org/10.1016/j.parco.2023.103043}, doi = {10.1016/J.PARCO.2023.103043}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/pc/ZhangHCLG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/AggarwalP23, author = {Manu Aggarwal and Vipul Periwal}, title = {Tight basis cycle representatives for persistent homology of large biological data sets}, journal = {PLoS Comput. Biol.}, volume = {19}, number = {5}, year = {2023}, url = {https://doi.org/10.1371/journal.pcbi.1010341}, doi = {10.1371/JOURNAL.PCBI.1010341}, timestamp = {Sat, 14 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/AggarwalP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/AhlquistSR23, author = {K. D. Ahlquist and Lauren A. Sugden and Sohini Ramachandran}, title = {Enabling interpretable machine learning for biological data with reliability scores}, journal = {PLoS Comput. Biol.}, volume = {19}, number = {5}, year = {2023}, url = {https://doi.org/10.1371/journal.pcbi.1011175}, doi = {10.1371/JOURNAL.PCBI.1011175}, timestamp = {Sat, 14 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/AhlquistSR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/MassonisVB23, author = {Gemma Massonis and Alejandro F. Villaverde and Julio R. Banga}, title = {Distilling identifiable and interpretable dynamic models from biological data}, journal = {PLoS Comput. Biol.}, volume = {19}, number = {10}, year = {2023}, url = {https://doi.org/10.1371/journal.pcbi.1011014}, doi = {10.1371/JOURNAL.PCBI.1011014}, timestamp = {Sat, 16 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/MassonisVB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/OzaWWUWGHTIWL23, author = {Vishal H. Oza and Jordan H. Whitlock and Elizabeth J. Wilk and Angelina E. Uno{-}Antonison and Brandon M. Wilk and Manavalan Gajapathy and Timothy C. Howton and Austyn Trull and Lara Ianov and Elizabeth A. Worthey and Brittany N. Lasseigne}, title = {Ten simple rules for using public biological data for your research}, journal = {PLoS Comput. Biol.}, volume = {19}, number = {1}, year = {2023}, url = {https://doi.org/10.1371/journal.pcbi.1010749}, doi = {10.1371/JOURNAL.PCBI.1010749}, timestamp = {Fri, 10 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/OzaWWUWGHTIWL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/siamsc/KazarnikovSHM23, author = {Alexey Kazarnikov and Robert Scheichl and Heikki Haario and Anna K. Marciniak{-}Czochra}, title = {A Bayesian Approach to Modeling Biological Pattern Formation with Limited Data}, journal = {{SIAM} J. Sci. Comput.}, volume = {45}, number = {5}, pages = {673}, year = {2023}, url = {https://doi.org/10.1137/22m1485553}, doi = {10.1137/22M1485553}, timestamp = {Thu, 09 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/siamsc/KazarnikovSHM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/soco/LiGCWQ23, author = {Dan Li and Hong Gu and Qiaozhen Chang and Jia Wang and Pan Qin}, title = {A joint optimization framework integrated with biological knowledge for clustering incomplete gene expression data}, journal = {Soft Comput.}, volume = {27}, number = {18}, pages = {13639--13656}, year = {2023}, url = {https://doi.org/10.1007/s00500-022-07180-y}, doi = {10.1007/S00500-022-07180-Y}, timestamp = {Tue, 01 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/soco/LiGCWQ23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ZhangL23, author = {Wenxiang Zhang and Bin Liu}, title = {iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple Biological Data by Ranking Framework}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {20}, number = {5}, pages = {3013--3019}, year = {2023}, url = {https://doi.org/10.1109/TCBB.2023.3258448}, doi = {10.1109/TCBB.2023.3258448}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ZhangL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tpds/DuanSWSGLFXLY23, author = {Xiaohui Duan and Qi Shao and Junben Weng and Bertil Schmidt and Lin Gan and Guohui Li and Haohuan Fu and Wei Xue and Weiguo Liu and Guangwen Yang}, title = {Bio-ESMD: {A} Data Centric Implementation for Large-Scale Biological System Simulation on Sunway TaihuLight Supercomputer}, journal = {{IEEE} Trans. Parallel Distributed Syst.}, volume = {34}, number = {3}, pages = {881--893}, year = {2023}, url = {https://doi.org/10.1109/TPDS.2022.3220559}, doi = {10.1109/TPDS.2022.3220559}, timestamp = {Sat, 25 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tpds/DuanSWSGLFXLY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/JamilKG23, author = {Hasan M. Jamil and Stephen A Krawetz and Alexander Gow}, editor = {May D. Wang and Byung{-}Jun Yoon}, title = {Leveraging Large Language Models for Automatic Hypotheses Testing over Heterogeneous Biological Databases}, booktitle = {Proceedings of the 14th {ACM} International Conference on Bioinformatics, Computational Biology, and Health Informatics, {BCB} 2023, Houston, TX, USA, September 3-6, 2023}, pages = {80:1--80:2}, publisher = {{ACM}}, year = {2023}, url = {https://doi.org/10.1145/3584371.3613022}, doi = {10.1145/3584371.3613022}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/JamilKG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/GhoshKK23, author = {Tomojit Ghosh and Karim Karimov and Michael Kirby}, editor = {Xingpeng Jiang and Haiying Wang and Reda Alhajj and Xiaohua Hu and Felix Engel and Mufti Mahmud and Nadia Pisanti and Xuefeng Cui and Hong Song}, title = {Sparse Linear Centroid-Encoder: {A} Biomarker Selection tool for High Dimensional Biological Data}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2023, Istanbul, Turkiye, December 5-8, 2023}, pages = {3012--3019}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/BIBM58861.2023.10385473}, doi = {10.1109/BIBM58861.2023.10385473}, timestamp = {Thu, 14 Mar 2024 16:59:09 +0100}, biburl = {https://dblp.org/rec/conf/bibm/GhoshKK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/btw/LofflerSWKK23, author = {Felicitas L{\"{o}}ffler and Fateme Shafiei and Ren{\'{e}} Witte and Birgitta K{\"{o}}nig{-}Ries and Friederike Klan}, editor = {Birgitta K{\"{o}}nig{-}Ries and Stefanie Scherzinger and Wolfgang Lehner and Gottfried Vossen}, title = {Semantic Search for Biological Datasets: {A} Usability Study on Modes of Querying and Explaining Search Results}, booktitle = {Datenbanksysteme f{\"{u}}r Business, Technologie und Web {(BTW} 2023), 20. Fachtagung des GI-Fachbereichs ,,Datenbanken und Informationssysteme" (DBIS), 06.-10, M{\"{a}}rz 2023, Dresden, Germany, Proceedings}, series = {{LNI}}, volume = {{P-331}}, pages = {851--864}, publisher = {Gesellschaft f{\"{u}}r Informatik e.V.}, year = {2023}, url = {https://doi.org/10.18420/BTW2023-56}, doi = {10.18420/BTW2023-56}, timestamp = {Tue, 04 Jul 2023 17:43:13 +0200}, biburl = {https://dblp.org/rec/conf/btw/LofflerSWKK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibcb/DubeSHG23, author = {Michael Dub{\'{e}} and James Sargant and Sheridan K. Houghten and Steffen Graether}, title = {From Bits to Bases: Evolving a Versatile Construct for Biological Sequence and Network Data}, booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics and Computational Biology, {CIBCB} 2023, Eindhoven, Netherlands, August 29-31, 2023}, pages = {1--9}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/CIBCB56990.2023.10264916}, doi = {10.1109/CIBCB56990.2023.10264916}, timestamp = {Thu, 19 Oct 2023 20:45:03 +0200}, biburl = {https://dblp.org/rec/conf/cibcb/DubeSHG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cikm/AvesaniBPBG23, author = {Simone Avesani and Vincenzo Bonnici and Simone Pernice and Marco Beccuti and Rosalba Giugno}, editor = {Ingo Frommholz and Frank Hopfgartner and Mark Lee and Michael Oakes and Mounia Lalmas and Min Zhang and Rodrygo L. T. Santos}, title = {{MODIMO:} Workshop on Multi-Omics Data Integration for Modelling Biological Systems}, booktitle = {Proceedings of the 32nd {ACM} International Conference on Information and Knowledge Management, {CIKM} 2023, Birmingham, United Kingdom, October 21-25, 2023}, pages = {5259--5262}, publisher = {{ACM}}, year = {2023}, url = {https://doi.org/10.1145/3583780.3615307}, doi = {10.1145/3583780.3615307}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cikm/AvesaniBPBG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/complexnetworks/GuzziRCV23, author = {Pietro Hiram Guzzi and Arkaprava Roy and Francesca Cortese and Pierangelo Veltri}, editor = {Hocine Cherifi and Luis M. Rocha and Chantal Cherifi and Murat Donduran}, title = {Non Parametric Differential Network Analysis for Biological Data}, booktitle = {Complex Networks {\&} Their Applications {XII} - Proceedings of The Twelfth International Conference on Complex Networks and their Applications: {COMPLEX} {NETWORKS} 2023, Menton, France, 28-30 November, 2023, Volume 3}, series = {Studies in Computational Intelligence}, volume = {1143}, pages = {114--123}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-53472-0\_10}, doi = {10.1007/978-3-031-53472-0\_10}, timestamp = {Mon, 15 Apr 2024 15:50:21 +0200}, biburl = {https://dblp.org/rec/conf/complexnetworks/GuzziRCV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eusipco/BertonCLH23, author = {Chlo{\'{e}} Berton and Gouenou Coatrieux and Dominique Lavenier and Sahar Haddad}, title = {Dynamic Sliding Window Encoding for Data Storage on {DNA} Under Biological and Indexing Constraints}, booktitle = {31st European Signal Processing Conference, {EUSIPCO} 2023, Helsinki, Finland, September 4-8, 2023}, pages = {1110--1114}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.23919/EUSIPCO58844.2023.10289957}, doi = {10.23919/EUSIPCO58844.2023.10289957}, timestamp = {Mon, 06 Nov 2023 12:35:15 +0100}, biburl = {https://dblp.org/rec/conf/eusipco/BertonCLH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbbb/LinL23, author = {Hung{-}Yi Lin and Ting{-}Han Lin}, title = {Efficient Feature Selection based on Soft Cluster Analysis for Biological Datasets}, booktitle = {Proceedings of the 13th International Conference on Bioscience, Biochemistry and Bioinformatics, {ICBBB} 2023, Tokyo, Japan, January 13-16, 2023}, pages = {10--16}, publisher = {{ACM}}, year = {2023}, url = {https://doi.org/10.1145/3586139.3586141}, doi = {10.1145/3586139.3586141}, timestamp = {Wed, 24 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbbb/LinL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iclr/DongK23, author = {Mingze Dong and Yuval Kluger}, title = {{GEASS:} Neural causal feature selection for high-dimensional biological data}, booktitle = {The Eleventh International Conference on Learning Representations, {ICLR} 2023, Kigali, Rwanda, May 1-5, 2023}, publisher = {OpenReview.net}, year = {2023}, url = {https://openreview.net/pdf?id=aKcS3xojnwY}, timestamp = {Fri, 30 Jun 2023 14:38:38 +0200}, biburl = {https://dblp.org/rec/conf/iclr/DongK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icvgip/ThottupattuSK23, author = {Alphin J. Thottupattu and Jayanthi Sivaswamy and Venky Krishnan}, editor = {Rahul Narain and Kaushik Mitra and Ian Reid}, title = {Global Space Modelling Of Biological Processes With Cross-sectional Data}, booktitle = {Proceedings of the Fourteenth Indian Conference on Computer Vision, Graphics and Image Processing, {ICVGIP} 2023, Rupnagar, India, December 15-17, 2023}, pages = {35:1--35:8}, publisher = {{ACM}}, year = {2023}, url = {https://doi.org/10.1145/3627631.3627666}, doi = {10.1145/3627631.3627666}, timestamp = {Sat, 10 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icvgip/ThottupattuSK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iecon/NomaKMOMYH23, author = {Hiroto Noma and Tatsuya Komatsu and Kansei Matsumoto and Hidetoshi Oya and Ryotaro Miura and Koji Yoshioka and Yoshikatsu Hoshi}, title = {Analysis of Biological Data of Cows and Development of Detection Systems for Calving Phase}, booktitle = {49th Annual Conference of the {IEEE} Industrial Electronics Society, {IECON} 2023, Singapore, October 16-19, 2023}, pages = {1--6}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/IECON51785.2023.10312098}, doi = {10.1109/IECON51785.2023.10312098}, timestamp = {Sat, 25 Nov 2023 16:52:31 +0100}, biburl = {https://dblp.org/rec/conf/iecon/NomaKMOMYH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iiwas/JamilKG23, author = {Hasan M. Jamil and Stephen A Krawetz and Alexander Gow}, editor = {Pari Delir Haghighi and Eric Pardede and Gillian Dobbie and Vithya Yogarajan and Ngurah Agus Sanjaya Er and Gabriele Kotsis and Ismail Khalil}, title = {Automatic Hypotheses Testing Over Heterogeneous Biological Databases Using Open Knowledge Networks}, booktitle = {Information Integration and Web Intelligence - 25th International Conference, iiWAS 2023, Denpasar, Bali, Indonesia, December 4-6, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14416}, pages = {358--364}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-48316-5\_34}, doi = {10.1007/978-3-031-48316-5\_34}, timestamp = {Thu, 07 Dec 2023 14:16:22 +0100}, biburl = {https://dblp.org/rec/conf/iiwas/JamilKG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ijcnn/SinghCPKY23, author = {Dinesh Singh and H{\'{e}}ctor Climente{-}Gonz{\'{a}}lez and Mathis Petrovich and Eiryo Kawakami and Makoto Yamada}, title = {FsNet: Feature Selection Network on High-dimensional Biological Data}, booktitle = {International Joint Conference on Neural Networks, {IJCNN} 2023, Gold Coast, Australia, June 18-23, 2023}, pages = {1--9}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/IJCNN54540.2023.10191985}, doi = {10.1109/IJCNN54540.2023.10191985}, timestamp = {Thu, 30 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ijcnn/SinghCPKY23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/inista/JaberHK23, author = {Iyad Jaber and Yousef Hassouneh and Maha Khemaja}, editor = {Tulay Yildirim and Richard Chbeir and Ladjel Bellatreche and Costin Badica}, title = {An Enhanced Feature Selection Approach Using Capuchin Search Algorithm for high-dimensional Biological Data Classification}, booktitle = {International Conference on Innovations in Intelligent Systems and Applications, {INISTA} 2023, Hammamet, Tunisia, September 20-23, 2023}, pages = {1--7}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/INISTA59065.2023.10310359}, doi = {10.1109/INISTA59065.2023.10310359}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/inista/JaberHK23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/ChourasiaMAP23, author = {Prakash Chourasia and Taslim Murad and Sarwan Ali and Murray Patterson}, editor = {Xuan Guo and Serghei Mangul and Murray Patterson and Alexander Zelikovsky}, title = {Enhancing t-SNE Performance for Biological Sequencing Data Through Kernel Selection}, booktitle = {Bioinformatics Research and Applications - 19th International Symposium, {ISBRA} 2023, Wroc{\l}aw, Poland, October 9-12, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14248}, pages = {442--452}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-981-99-7074-2\_35}, doi = {10.1007/978-981-99-7074-2\_35}, timestamp = {Tue, 10 Oct 2023 15:52:57 +0200}, biburl = {https://dblp.org/rec/conf/isbra/ChourasiaMAP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/nips/0005WY023, author = {Tianyu Liu and Yuge Wang and Rex Ying and Hongyu Zhao}, editor = {Alice Oh and Tristan Naumann and Amir Globerson and Kate Saenko and Moritz Hardt and Sergey Levine}, title = {MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data}, booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans, LA, USA, December 10 - 16, 2023}, year = {2023}, url = {http://papers.nips.cc/paper\_files/paper/2023/hash/4db8a681ae1e58376dc6227978829063-Abstract-Conference.html}, timestamp = {Fri, 01 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/nips/0005WY023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sac/JamilN23, author = {Hasan M. Jamil and Kallol Naha}, editor = {Jiman Hong and Maart Lanperne and Juw Won Park and Tom{\'{a}}s Cern{\'{y}} and Hossain Shahriar}, title = {Mapping Strategies for Declarative Queries over Online Heterogeneous Biological Databases for Intelligent Responses}, booktitle = {Proceedings of the 38th {ACM/SIGAPP} Symposium on Applied Computing, {SAC} 2023, Tallinn, Estonia, March 27-31, 2023}, pages = {567--574}, publisher = {{ACM}}, year = {2023}, url = {https://doi.org/10.1145/3555776.3577652}, doi = {10.1145/3555776.3577652}, timestamp = {Fri, 21 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/sac/JamilN23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sbbd/VieiraAJCMHL23, author = {Diogo Munaro Vieira and Elvismary Molina de Armas and Maria L. G. Jaramillo and Marcos Catanho and Antonio B. de Miranda and Edward Hermann Haeusler and S{\'{e}}rgio Lifschitz}, title = {A New Data Modeling Approach for Alignment-free Biological Applications}, booktitle = {Proceedings of the 38th Brazilian Symposium on Databases, {SBBD} 2023, Belo Horizonte, MG, Brazil, September 25-29, 2023}, pages = {1--13}, publisher = {{SBC}}, year = {2023}, url = {https://sol.sbc.org.br/index.php/sbbd/article/view/25512}, timestamp = {Wed, 25 Oct 2023 16:14:02 +0200}, biburl = {https://dblp.org/rec/conf/sbbd/VieiraAJCMHL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sccc/MariangelGAVI23, author = {Nicol{\'{a}}s Mari{\'{a}}ngel and Juan Giglio and Sebasti{\'{a}}n Aliaga{-}Rojas and Manuel Villalobos{-}Cid and Mario Inostroza{-}Ponta}, title = {Evaluating the incorporation of Biological Knowledge in multiobjective clustering of gene expression data}, booktitle = {42nd {IEEE} International Conference of the Chilean Computer Science Society, {SCCC} 2023, Concepcion, Chile, October 23-26, 2023}, pages = {1--8}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/SCCC59417.2023.10315704}, doi = {10.1109/SCCC59417.2023.10315704}, timestamp = {Fri, 01 Dec 2023 14:37:00 +0100}, biburl = {https://dblp.org/rec/conf/sccc/MariangelGAVI23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/smc/ZhanW23, author = {Huixin Zhan and Yifan Wang}, title = {Group Lasso with Checkpoints Selection for Biological Data Regression}, booktitle = {{IEEE} International Conference on Systems, Man, and Cybernetics, {SMC} 2023, Honolulu, Oahu, HI, USA, October 1-4, 2023}, pages = {1792--1797}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/SMC53992.2023.10394634}, doi = {10.1109/SMC53992.2023.10394634}, timestamp = {Thu, 29 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/smc/ZhanW23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wob/VillelaLF23, author = {Victor Chavauty Villela and Eduardo Silva Lira and Andr{\'{e}} Fujita}, editor = {Marcelo da Silva Reis and Raquel Cardoso de Melo Minardi}, title = {Spectrum-Based Statistical Methods for Directed Graphs with Applications in Biological Data}, booktitle = {Advances in Bioinformatics and Computational Biology - 16th Brazilian Symposium on Bioinformatics, {BSB} 2023, Curitiba, Brazil, June 13-16, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13954}, pages = {46--57}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-42715-2\_5}, doi = {10.1007/978-3-031-42715-2\_5}, timestamp = {Sun, 10 Sep 2023 08:54:56 +0200}, biburl = {https://dblp.org/rec/conf/wob/VillelaLF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2303-16725, author = {Alex J. Lee and Robert Cahill and Reza Abbasi{-}Asl}, title = {Machine Learning for Uncovering Biological Insights in Spatial Transcriptomics Data}, journal = {CoRR}, volume = {abs/2303.16725}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2303.16725}, doi = {10.48550/ARXIV.2303.16725}, eprinttype = {arXiv}, eprint = {2303.16725}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2303-16725.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2305-15611, author = {Yujun Yan and Gaotang Li and Danai Koutra}, title = {Size Generalizability of Graph Neural Networks on Biological Data: Insights and Practices from the Spectral Perspective}, journal = {CoRR}, volume = {abs/2305.15611}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2305.15611}, doi = {10.48550/ARXIV.2305.15611}, eprinttype = {arXiv}, eprint = {2305.15611}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2305-15611.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2306-17400, author = {Ruben Glatt and Shusen Liu}, title = {Topological Data Analysis Guided Segment Anything Model Prompt Optimization for Zero-Shot Segmentation in Biological Imaging}, journal = {CoRR}, volume = {abs/2306.17400}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2306.17400}, doi = {10.48550/ARXIV.2306.17400}, eprinttype = {arXiv}, eprint = {2306.17400}, timestamp = {Mon, 03 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2306-17400.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2308-06430, author = {Zhendong Sha and Li Zhu and Zijun Jiang and Yuanzhu Peter Chen and Ting Hu}, title = {How complex is the microarray dataset? {A} novel data complexity metric for biological high-dimensional microarray data}, journal = {CoRR}, volume = {abs/2308.06430}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2308.06430}, doi = {10.48550/ARXIV.2308.06430}, eprinttype = {arXiv}, eprint = {2308.06430}, timestamp = {Wed, 23 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2308-06430.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2308-09791, author = {Niloufar Mehrabi and Sayed Pedram Haeri Boroujeni and Elnaz Pashaei}, title = {An Efficient High-Dimensional Gene Selection Approach based on Binary Horse Herd Optimization Algorithm for Biological Data Classification}, journal = {CoRR}, volume = {abs/2308.09791}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2308.09791}, doi = {10.48550/ARXIV.2308.09791}, eprinttype = {arXiv}, eprint = {2308.09791}, timestamp = {Fri, 25 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2308-09791.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2310-02275, author = {Tianyu Liu and Yuge Wang and Rex Ying and Hongyu Zhao}, title = {MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data}, journal = {CoRR}, volume = {abs/2310.02275}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2310.02275}, doi = {10.48550/ARXIV.2310.02275}, eprinttype = {arXiv}, eprint = {2310.02275}, timestamp = {Thu, 19 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2310-02275.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2311-05668, author = {Terence R. Johnson and Philip E. Bourne}, title = {The Biological Data Sustainability Paradox}, journal = {CoRR}, volume = {abs/2311.05668}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2311.05668}, doi = {10.48550/ARXIV.2311.05668}, eprinttype = {arXiv}, eprint = {2311.05668}, timestamp = {Thu, 16 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2311-05668.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:books/hal/Poulain22, author = {Pierre Poulain}, title = {Recyclage des donn{\'{e}}es de la recherche en biologie : vers une bioinformatique {\'{e}}cologique? (Recycling biological research data: towards an ecological bioinformatics?)}, year = {2022}, url = {https://tel.archives-ouvertes.fr/tel-03737350}, timestamp = {Fri, 18 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/books/hal/Poulain22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Hoffmann22, author = {Karl B. Hoffmann}, title = {Robust Identification of Topological Defects in Discrete Vector Fields with Applications to Biological Image Data}, school = {University of Dresden, Germany}, year = {2022}, url = {https://nbn-resolving.org/urn:nbn:de:bsz:14-qucosa2-857202}, urn = {urn:nbn:de:bsz:14-qucosa2-857202}, timestamp = {Wed, 28 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Hoffmann22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Safinianaini22, author = {Negar Safinianaini}, title = {Novel likelihood-based inference techniques for sequential data with medical and biological applications}, school = {Royal Institute of Technology, Stockholm, Sweden}, year = {2022}, url = {https://nbn-resolving.org/urn:nbn:se:kth:diva-311350}, urn = {urn:nbn:se:kth:diva-311350}, timestamp = {Thu, 12 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Safinianaini22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/be/Thi22, author = {Danh Bui Thi}, title = {Biological data mining : from interestingness measure to deep learning}, school = {University of Antwerp, Belgium}, year = {2022}, url = {https://hdl.handle.net/10067/1869020151162165141}, timestamp = {Mon, 18 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/be/Thi22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/it/Leone22, author = {Michele Leone}, title = {Genomic metadata integration and data processing methods for the analysis of chromatin behaviour in different biological conditions}, school = {Polytechnic University of Milan, Italy}, year = {2022}, url = {https://hdl.handle.net/10589/183678}, timestamp = {Thu, 20 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/it/Leone22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/aam/DimitrovaHLSZ22, author = {Elena S. Dimitrova and Jingzhen Hu and Qingzhong Liang and Brandilyn Stigler and Anyu Zhang}, title = {Algebraic model selection and experimental design in biological data science}, journal = {Adv. Appl. Math.}, volume = {133}, pages = {102282}, year = {2022}, url = {https://doi.org/10.1016/j.aam.2021.102282}, doi = {10.1016/J.AAM.2021.102282}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/aam/DimitrovaHLSZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/aei/LiHYZGWL22, author = {Xuerui Li and Xinggang Hou and Mei Yang and Lin Zhang and Haoyue Guo and Luyao Wang and Xinying Li}, title = {A method of constructing an inspiration library driven by user-perceived preference evaluation data for biologically inspired design}, journal = {Adv. Eng. Informatics}, volume = {52}, pages = {101617}, year = {2022}, url = {https://doi.org/10.1016/j.aei.2022.101617}, doi = {10.1016/J.AEI.2022.101617}, timestamp = {Wed, 22 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/aei/LiHYZGWL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/RezendeXAFP22, author = {P{\^{a}}mela M. Rezende and Joicymara S. Xavier and David B. Ascher and Gabriel R. Fernandes and Douglas E. V. Pires}, title = {Evaluating hierarchical machine learning approaches to classify biological databases}, journal = {Briefings Bioinform.}, volume = {23}, number = {4}, year = {2022}, url = {https://doi.org/10.1093/bib/bbac216}, doi = {10.1093/BIB/BBAC216}, timestamp = {Mon, 08 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/RezendeXAFP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/TangYLZ22, author = {Hui Tang and Xiangtian Yu and Rui Liu and Tao Zeng}, title = {Vec2image: an explainable artificial intelligence model for the feature representation and classification of high-dimensional biological data by vector-to-image conversion}, journal = {Briefings Bioinform.}, volume = {23}, number = {2}, year = {2022}, url = {https://doi.org/10.1093/bib/bbab584}, doi = {10.1093/BIB/BBAB584}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/TangYLZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WangTYKP22, author = {Lei Wang and Yaqin Tan and Xiaoyu Yang and Linai Kuang and Pengyao Ping}, title = {Review on predicting pairwise relationships between human microbes, drugs and diseases: from biological data to computational models}, journal = {Briefings Bioinform.}, volume = {23}, number = {3}, year = {2022}, url = {https://doi.org/10.1093/bib/bbac080}, doi = {10.1093/BIB/BBAC080}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/WangTYKP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bigdata/DallAlbaCANS22, author = {Gabriel Dall'Alba and Pedro Lenz Casa and Fernanda Pessi de Abreu and Daniel Luis Notari and Scheila de Avila e Silva}, title = {A Survey of Biological Data in a Big Data Perspective}, journal = {Big Data}, volume = {10}, number = {4}, pages = {279--297}, year = {2022}, url = {https://doi.org/10.1089/big.2020.0383}, doi = {10.1089/BIG.2020.0383}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bigdata/DallAlbaCANS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/WrightORWTJHS22, author = {Adam J. Wright and Marija Orlic{-}Milacic and Karen Rothfels and Joel Weiser and Quang M. Trinh and Bijay Jassal and Robin Haw and Lincoln D. Stein}, title = {Evaluating the predictive accuracy of curated biological pathways in a public knowledgebase}, journal = {Database J. Biol. Databases Curation}, volume = {2022}, number = {2022}, year = {2022}, url = {https://doi.org/10.1093/database/baac009}, doi = {10.1093/DATABASE/BAAC009}, timestamp = {Mon, 30 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/WrightORWTJHS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenCL22, author = {Yang Chen and Shue Chen and Elissa P. Lei}, title = {DiffChIPL: a differential peak analysis method for high-throughput sequencing data with biological replicates based on limma}, journal = {Bioinform.}, volume = {38}, number = {17}, pages = {4062--4069}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btac498}, doi = {10.1093/BIOINFORMATICS/BTAC498}, timestamp = {Thu, 22 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChenLIWL22, author = {Chixiang Chen and Yuk Yee Leung and Matei Ionita and Li{-}San Wang and Mingyao Li}, title = {Omnibus and robust deconvolution scheme for bulk {RNA} sequencing data integrating multiple single-cell reference sets and prior biological knowledge}, journal = {Bioinform.}, volume = {38}, number = {19}, pages = {4530--4536}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btac563}, doi = {10.1093/BIOINFORMATICS/BTAC563}, timestamp = {Tue, 18 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLIWL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/IkedaOOCNMKYOGK22, author = {Shuya Ikeda and Hiromasa Ono and Tazro Ohta and Hirokazu Chiba and Yuki Naito and Yuki Moriya and Shuichi Kawashima and Yasunori Yamamoto and Shinobu Okamoto and Susumu Goto and Toshiaki Katayama}, title = {TogoID: an exploratory {ID} converter to bridge biological datasets}, journal = {Bioinform.}, volume = {38}, number = {17}, pages = {4194--4199}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btac491}, doi = {10.1093/BIOINFORMATICS/BTAC491}, timestamp = {Mon, 24 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/IkedaOOCNMKYOGK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VerschaffeltCBM22, author = {Pieter Verschaffelt and James H. Collier and Alexander Botzki and Lennart Martens and Peter Dawyndt and Bart Mesuere}, title = {Unipept Visualizations: an interactive visualization library for biological data}, journal = {Bioinform.}, volume = {38}, number = {2}, pages = {562--563}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btab590}, doi = {10.1093/BIOINFORMATICS/BTAB590}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/VerschaffeltCBM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biosystems/MalepathiranaSV22, author = {Tamasha Malepathirana and Damith A. Senanayake and Rajith Vidanaarachchi and Vini Gautam and Saman K. Halgamuge}, title = {Dimensionality reduction for visualizing high-dimensional biological data}, journal = {Biosyst.}, volume = {220}, pages = {104749}, year = {2022}, url = {https://doi.org/10.1016/j.biosystems.2022.104749}, doi = {10.1016/J.BIOSYSTEMS.2022.104749}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biosystems/MalepathiranaSV22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FigueiredoSRHKM22, author = {Rebeca Queiroz Figueiredo and Sara D{\'{\i}}az del Ser and Tamara Raschka and Martin Hofmann{-}Apitius and Alpha Tom Kodamullil and Sarah Mubeen and Daniel Domingo{-}Fern{\'{a}}ndez}, title = {Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets}, journal = {{BMC} Bioinform.}, volume = {23}, number = {1}, pages = {231}, year = {2022}, url = {https://doi.org/10.1186/s12859-022-04765-0}, doi = {10.1186/S12859-022-04765-0}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FigueiredoSRHKM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MrukwaP22, author = {Grzegorz Mrukwa and Joanna Polanska}, title = {DiviK: divisive intelligent K-means for hands-free unsupervised clustering in big biological data}, journal = {{BMC} Bioinform.}, volume = {23}, number = {1}, pages = {538}, year = {2022}, url = {https://doi.org/10.1186/s12859-022-05093-z}, doi = {10.1186/S12859-022-05093-Z}, timestamp = {Sun, 25 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MrukwaP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PacinkovaP22, author = {Anna Pac{\'{\i}}nkov{\'{a}} and Vlad Popovici}, title = {Using empirical biological knowledge to infer regulatory networks from multi-omics data}, journal = {{BMC} Bioinform.}, volume = {23}, number = {1}, pages = {351}, year = {2022}, url = {https://doi.org/10.1186/s12859-022-04891-9}, doi = {10.1186/S12859-022-04891-9}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PacinkovaP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PacinkovaP22a, author = {Anna Pac{\'{\i}}nkov{\'{a}} and Vlad Popovici}, title = {Correction: Using empirical biological knowledge to infer regulatory networks from multi-omics data}, journal = {{BMC} Bioinform.}, volume = {23}, number = {1}, pages = {376}, year = {2022}, url = {https://doi.org/10.1186/s12859-022-04931-4}, doi = {10.1186/S12859-022-04931-4}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PacinkovaP22a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YangGLLWCQZWLPC22, author = {Qing Yang and Sunan Gao and Junfen Lin and Ke Lyu and Zexu Wu and Yuhao Chen and Yinwei Qiu and Yanrong Zhao and Wei Wang and Tianxiang Lin and Huiyun Pan and Ming Chen}, title = {A machine learning-based data mining in medical examination data: a biological features-based biological age prediction model}, journal = {{BMC} Bioinform.}, volume = {23}, number = {1}, pages = {411}, year = {2022}, url = {https://doi.org/10.1186/s12859-022-04966-7}, doi = {10.1186/S12859-022-04966-7}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/YangGLLWCQZWLPC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cea/MahjenabadiMRKR22, author = {Vahid Alah Jahandideh Mahjenabadi and Seyed Roohollah Mousavi and Asghar Rahmani and Alidad Karami and Hadi Asadi Rahmani and Kazem Khavazi and Meisam Rezaei}, title = {Digital mapping of soil biological properties and wheat yield using remotely sensed, soil chemical data and machine learning approaches}, journal = {Comput. Electron. Agric.}, volume = {197}, pages = {106978}, year = {2022}, url = {https://doi.org/10.1016/j.compag.2022.106978}, doi = {10.1016/J.COMPAG.2022.106978}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cea/MahjenabadiMRKR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ewc/PawarLGUT22, author = {Aishwarya Pawar and Linlin Li and Arun Gosain and David M. Umulis and Adrian Buganza Tepole}, title = {PDE-constrained shape registration to characterize biological growth and morphogenesis from imaging data}, journal = {Eng. Comput.}, volume = {38}, number = {5}, pages = {3909--3924}, year = {2022}, url = {https://doi.org/10.1007/s00366-022-01682-x}, doi = {10.1007/S00366-022-01682-X}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ewc/PawarLGUT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ewc/TacSRT22, author = {Vahidullah Tac and Vivek D. Sree and Manuel K. Rausch and Adrian Buganza Tepole}, title = {Data-driven modeling of the mechanical behavior of anisotropic soft biological tissue}, journal = {Eng. Comput.}, volume = {38}, number = {5}, pages = {4167--4182}, year = {2022}, url = {https://doi.org/10.1007/s00366-022-01733-3}, doi = {10.1007/S00366-022-01733-3}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ewc/TacSRT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fbinf/Weiskopf22, author = {Daniel Weiskopf}, title = {Uncertainty Visualization: Concepts, Methods, and Applications in Biological Data Visualization}, journal = {Frontiers Bioinform.}, volume = {2}, pages = {793819}, year = {2022}, url = {https://doi.org/10.3389/fbinf.2022.793819}, doi = {10.3389/FBINF.2022.793819}, timestamp = {Fri, 13 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fbinf/Weiskopf22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fcomp/KlatzowDMSU22, author = {James Klatzow and Giovanni Dalmasso and Neus Mart{\'{\i}}nez{-}Abad{\'{\i}}as and James Sharpe and Virginie Uhlmann}, title = {{\(\mu\)}Match: 3D Shape Correspondence for Biological Image Data}, journal = {Frontiers Comput. Sci.}, volume = {4}, pages = {777615}, year = {2022}, url = {https://doi.org/10.3389/fcomp.2022.777615}, doi = {10.3389/FCOMP.2022.777615}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fcomp/KlatzowDMSU22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fdata/AdigaPBMR22, author = {Abhijin Adiga and Nicholas Palmer and Young Yun Baek and Henning S. Mortveit and S. S. Ravi}, title = {Network Models and Simulation Analytics for Multi-scale Dynamics of Biological Invasions}, journal = {Frontiers Big Data}, volume = {5}, pages = {796897}, year = {2022}, url = {https://doi.org/10.3389/fdata.2022.796897}, doi = {10.3389/FDATA.2022.796897}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fdata/AdigaPBMR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijcomsys/NiranjanaPS22, author = {G. Niranjana and A. Poongodai and K. L. S. Soujanya}, title = {Biological inspired self-organized secure autonomous routing protocol and secured data assured routing in {WSN:} Hybrid {EHO} and {MBO} approach}, journal = {Int. J. Commun. Syst.}, volume = {35}, number = {4}, year = {2022}, url = {https://doi.org/10.1002/dac.5044}, doi = {10.1002/DAC.5044}, timestamp = {Tue, 15 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijcomsys/NiranjanaPS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijict/Saeed22, author = {Faisal Saeed}, title = {Machine learning methods for predicting the biological activities of molecules in high diverse databases}, journal = {Int. J. Inf. Commun. Technol.}, volume = {21}, number = {2}, pages = {170--180}, year = {2022}, url = {https://doi.org/10.1504/IJICT.2022.10048852}, doi = {10.1504/IJICT.2022.10048852}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijict/Saeed22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/QianFLL22, author = {Kun Qian and Shiwei Fu and Hongwei Li and Wei Vivian Li}, title = {The scINSIGHT Package for Integrating Single-Cell RNA-Seq Data from Different Biological Conditions}, journal = {J. Comput. Biol.}, volume = {29}, number = {11}, pages = {1233--1236}, year = {2022}, url = {https://doi.org/10.1089/cmb.2022.0244}, doi = {10.1089/CMB.2022.0244}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/QianFLL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jdi/GarauOSMBBMFBPR22, author = {Noemi Garau and Alessandro Orro and Paul E. Summers and Lorenza De Maria and Raffaella Bertolotti and Danny Bassis and Marta Minotti and Elvio De Fiori and Guido Baroni and Chiara Paganelli and Cristiano Rampinelli}, title = {Integrating Biological and Radiological Data in a Structured Repository: a Data Model Applied to the {COSMOS} Case Study}, journal = {J. Digit. Imaging}, volume = {35}, number = {4}, pages = {970--982}, year = {2022}, url = {https://doi.org/10.1007/s10278-022-00615-w}, doi = {10.1007/S10278-022-00615-W}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jdi/GarauOSMBBMFBPR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jucs/ThaherAASTC22, author = {Thaer Thaher and Mohammed Awad and Mohammed Aldasht and Alaa F. Sheta and Hamza Turabieh and Hamouda Chantar}, title = {An Enhanced Evolutionary Based Feature Selection Approach Using Grey Wolf Optimizer for the Classification of High-dimensional Biological Data}, journal = {J. Univers. Comput. Sci.}, volume = {28}, number = {5}, pages = {499--539}, year = {2022}, url = {https://doi.org/10.3897/jucs.78218}, doi = {10.3897/JUCS.78218}, timestamp = {Thu, 07 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jucs/ThaherAASTC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/keds/PutriWRUU22, author = {Nastiti Susetyo Fanany Putri and Aji Prasetya Wibawa and Harits Ar Rosyid and Agung Bella Putra Utama and Wako Uriu}, title = {Performance of Ensemble Classification for Agricultural and Biological Science Journals with Scopus Index}, journal = {Knowl. Eng. Data Sci.}, volume = {5}, number = {2}, pages = {137--142}, year = {2022}, url = {https://doi.org/10.17977/um018v5i22022p137-142}, doi = {10.17977/UM018V5I22022P137-142}, timestamp = {Thu, 01 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/keds/PutriWRUU22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/midm/MondalDAWMBSH22, author = {Rahul Mondal and Minh Dung Do and Nasimuddin Ahmed and Daniel Walke and Daniel Micheel and David Broneske and Gunter Saake and Robert Heyer}, title = {Decision tree learning in Neo4j on homogeneous and unconnected graph nodes from biological and clinical datasets}, journal = {{BMC} Medical Informatics Decis. Mak.}, volume = {22-S}, number = {6}, pages = {347}, year = {2022}, url = {https://doi.org/10.1186/s12911-023-02112-8}, doi = {10.1186/S12911-023-02112-8}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/midm/MondalDAWMBSH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PancsaFMSTFLSHS22, author = {Rita Pancsa and Erzs{\'{e}}bet Fich{\'{o}} and Daniel Molnar and {\'{E}}va Viola Sur{\'{a}}nyi and Tam{\'{a}}s Trombit{\'{a}}s and D{\'{o}}ra F{\"{u}}zesi and Hanna L{\'{o}}czi and P{\'{e}}ter Szijj{\'{a}}rt{\'{o}} and Rita H{\'{\i}}rmond{\'{o}} and Judit E. Szab{\'{o}} and Judit T{\'{o}}th}, title = {dNTPpoolDB: a manually curated database of experimentally determined dNTP pools and pool changes in biological samples}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {1508--1514}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab910}, doi = {10.1093/NAR/GKAB910}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PancsaFMSTFLSHS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/VaradiAABCDNNPT22, author = {Mihaly Varadi and Stephen Anyango and David R. Armstrong and John M. Berrisford and Preeti Choudhary and Mandar S. Deshpande and Nurul Nadzirin and Sreenath Nair and Luk{\'{a}}s Pravda and Ahsan Tanweer and Bissan Al{-}Lazikani and Claudia Andreini and Geoffrey J. Barton and David Bednar and Karel Berka and Tom L. Blundell and Kelly Brock and Jos{\'{e}} Mar{\'{\i}}a Carazo and Jir{\'{\i}} Damborsk{\'{y}} and Alessia David and Sucharita Dey and Roland L. Dunbrack Jr. and Juan Fern{\'{a}}ndez{-}Recio and Franca Fraternali and Toby J. Gibson and Manuela Helmer{-}Citterich and David Hoksza and Thomas A. Hopf and David Jakubec and Natarajan Kannan and Radoslav Kriv{\'{a}}k and Manjeet Kumar and Emmanuel D. Levy and Nir London and Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and Mallur Srivatsan Madhusudhan and Debora S. Marks and Lennart Martens and Stuart A McGowan and Jake E. McGreig and Vivek Modi and R. Gonzalo Parra and Gerardo Pepe and Damiano Piovesan and Jaime Prilusky and Valeria Putignano and Leandro G. Radusky and Pathmanaban Ramasamy and Atilio O. Rausch and Nathalie Reuter and Luis A. Rodriguez and Nathan J. Rollins and Antonio Rosato and Pawel Rubach and Luis Serrano and Gulzar Singh and Petr Skoda and Carlos Oscar S{\'{a}}nchez Sorzano and Jan Stourac and Joanna I. Sulkowska and Radka Svobodov{\'{a}} Varekov{\'{a}} and Natalia Tichshenko and Silvio C. E. Tosatto and Wim F. Vranken and Mark N. Wass and Dandan Xue and Daniel Zaidman and Janet M. Thornton and Michael J. E. Sternberg and Christine A. Orengo and Sameer Velankar}, title = {PDBe-KB: collaboratively defining the biological context of structural data}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {534--542}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab988}, doi = {10.1093/NAR/GKAB988}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/VaradiAABCDNNPT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/AuerMK22, author = {Florian Auer and Simone Mayer and Frank Kramer}, title = {Data-dependent visualization of biological networks in the web-browser with NDExEdit}, journal = {PLoS Comput. Biol.}, volume = {18}, number = {6}, year = {2022}, url = {https://doi.org/10.1371/journal.pcbi.1010205}, doi = {10.1371/JOURNAL.PCBI.1010205}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/AuerMK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/symmetry/ZdimalovaCKGOKK22, author = {M{\'{a}}ria Zd{\'{\i}}malov{\'{a}} and Anuprava Chatterjee and Helena Kosn{\'{a}}cov{\'{a}} and Mridul Ghosh and Sk Md Obaidullah and Martin Kopani and Daniel Kosn{\'{a}}c}, title = {Various Approaches to the Quantitative Evaluation of Biological and Medical Data Using Mathematical Models}, journal = {Symmetry}, volume = {14}, number = {1}, pages = {7}, year = {2022}, url = {https://doi.org/10.3390/sym14010007}, doi = {10.3390/SYM14010007}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/symmetry/ZdimalovaCKGOKK22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/Sefer22, author = {Emre Sefer}, title = {BioCode: {A} Data-Driven Procedure to Learn the Growth of Biological Networks}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {19}, number = {6}, pages = {3103--3113}, year = {2022}, url = {https://doi.org/10.1109/TCBB.2022.3165092}, doi = {10.1109/TCBB.2022.3165092}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/Sefer22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/BabjacRSE22, author = {Ashley Babjac and Taylor M. Royalty and Andrew D. Steen and Scott J. Emrich}, title = {A comparison of dimensionality reduction methods for large biological data}, booktitle = {{BCB} '22: 13th {ACM} International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7 - 10, 2022}, pages = {15:1--15:7}, publisher = {{ACM}}, year = {2022}, url = {https://doi.org/10.1145/3535508.3545536}, doi = {10.1145/3535508.3545536}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/BabjacRSE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/AlipourfardG22, author = {Borzou Alipourfard and Jean Gao}, editor = {Donald A. Adjeroh and Qi Long and Xinghua Mindy Shi and Fei Guo and Xiaohua Hu and Srinivas Aluru and Giri Narasimhan and Jianxin Wang and Mingon Kang and Ananda Mondal and Jin Liu}, title = {Causal Discovery in Biological Data Using Directed Topological Overlap Matrix}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2022, Las Vegas, NV, USA, December 6-8, 2022}, pages = {908--915}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/BIBM55620.2022.9995122}, doi = {10.1109/BIBM55620.2022.9995122}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/AlipourfardG22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdataconf/ChourasiaAP22, author = {Prakash Chourasia and Sarwan Ali and Murray Patterson}, editor = {Shusaku Tsumoto and Yukio Ohsawa and Lei Chen and Dirk Van den Poel and Xiaohua Hu and Yoichi Motomura and Takuya Takagi and Lingfei Wu and Ying Xie and Akihiro Abe and Vijay Raghavan}, title = {Informative Initialization and Kernel Selection Improves t-SNE for Biological Sequences}, booktitle = {{IEEE} International Conference on Big Data, Big Data 2022, Osaka, Japan, December 17-20, 2022}, pages = {101--106}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/BigData55660.2022.10020217}, doi = {10.1109/BIGDATA55660.2022.10020217}, timestamp = {Fri, 18 Aug 2023 17:39:03 +0200}, biburl = {https://dblp.org/rec/conf/bigdataconf/ChourasiaAP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdataconf/FuH22, author = {Dongqi Fu and Jingrui He}, editor = {Shusaku Tsumoto and Yukio Ohsawa and Lei Chen and Dirk Van den Poel and Xiaohua Hu and Yoichi Motomura and Takuya Takagi and Lingfei Wu and Ying Xie and Akihiro Abe and Vijay Raghavan}, title = {{DPPIN:} {A} Biological Repository of Dynamic Protein-Protein Interaction Network Data}, booktitle = {{IEEE} International Conference on Big Data, Big Data 2022, Osaka, Japan, December 17-20, 2022}, pages = {5269--5277}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/BigData55660.2022.10020904}, doi = {10.1109/BIGDATA55660.2022.10020904}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bigdataconf/FuH22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibcb/Demir22, author = {Esra Demir}, title = {Big Biological Data: Need for a Reorientation of the Governance Framework}, booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics and Computational Biology, {CIBCB} 2022, Ottawa, ON, Canada, August 15-17, 2022}, pages = {1--7}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/CIBCB55180.2022.9863047}, doi = {10.1109/CIBCB55180.2022.9863047}, timestamp = {Wed, 07 Sep 2022 16:40:47 +0200}, biburl = {https://dblp.org/rec/conf/cibcb/Demir22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/codit/RistevskiSS22, author = {Blagoj Ristevski and Snezana Savoska and Zlatko Savoski}, title = {Using Graph Databases for Portraying and Analysing Biological and Biomedical Networks}, booktitle = {8th International Conference on Control, Decision and Information Technologies, CoDIT 2022, Istanbul, Turkey, May 17-20, 2022}, pages = {565--568}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/CoDIT55151.2022.9804139}, doi = {10.1109/CODIT55151.2022.9804139}, timestamp = {Mon, 25 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/codit/RistevskiSS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/MatsudaNT22, author = {Naoya Matsuda and Iko Nakari and Keiki Takadama}, title = {Unstable Circadian Rhythm of Heart Rate of Alzheimer Dementia Based on Biological Data of Mattress Sensor}, booktitle = {44th Annual International Conference of the {IEEE} Engineering in Medicine {\&} Biology Society, {EMBC} 2022, Glasgow, Scotland, United Kingdom, July 11-15, 2022}, pages = {1129--1132}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/EMBC48229.2022.9871112}, doi = {10.1109/EMBC48229.2022.9871112}, timestamp = {Thu, 22 Sep 2022 19:31:35 +0200}, biburl = {https://dblp.org/rec/conf/embc/MatsudaNT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/NakariMT22, author = {Iko Nakari and Naoya Matsuda and Keiki Takadama}, title = {Non-Contact {REM} Sleep Estimation Correction by Time-Series Confidence of Predictions: From Binary to Continuous Prediction in Machine Learning for Biological Data}, booktitle = {44th Annual International Conference of the {IEEE} Engineering in Medicine {\&} Biology Society, {EMBC} 2022, Glasgow, Scotland, United Kingdom, July 11-15, 2022}, pages = {1008--1011}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/EMBC48229.2022.9871503}, doi = {10.1109/EMBC48229.2022.9871503}, timestamp = {Thu, 22 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/embc/NakariMT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/huc/Young-NgCKGSV22, author = {Meredith Young{-}Ng and Grace Chen and Danielle Kiyama and Anna{-}Sofia Giannicola and Erkin Seker and Katia Vega}, title = {Sweatcessory: a Wearable Necklace for Sensing Biological Data in Sweat}, booktitle = {Adjunct Proceedings of the 2022 {ACM} International Joint Conference on Pervasive and Ubiquitous Computing and the 2022 {ACM} International Symposium on Wearable Computers, UbiComp/ISWC 2022, Cambridge, United Kingdom, September 11-15, 2022}, pages = {141--143}, publisher = {{ACM}}, year = {2022}, url = {https://doi.org/10.1145/3544793.3560342}, doi = {10.1145/3544793.3560342}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/huc/Young-NgCKGSV22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icann/ItoUTTKON22, author = {Eisuke Ito and Takaya Ueda and Ryo Takano and Yukako Tohsato and Koji Kyoda and Shuichi Onami and Ikuko Nishikawa}, editor = {Elias Pimenidis and Plamen P. Angelov and Chrisina Jayne and Antonios Papaleonidas and Mehmet Aydin}, title = {Phenotype Anomaly Detection for Biological Dynamics Data Using a Deep Generative Model}, booktitle = {Artificial Neural Networks and Machine Learning - {ICANN} 2022 - 31st International Conference on Artificial Neural Networks, Bristol, UK, September 6-9, 2022, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {13530}, pages = {432--444}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-15931-2\_36}, doi = {10.1007/978-3-031-15931-2\_36}, timestamp = {Tue, 18 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icann/ItoUTTKON22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ispa/JamilN22, author = {Hasan M. Jamil and Kallol Naha}, title = {Mapping Declarative Queries to Heterogeneous Biological Databases using Schema Graphs for Intelligent Responses}, booktitle = {{IEEE} Intl Conf on Parallel {\&} Distributed Processing with Applications, Big Data {\&} Cloud Computing, Sustainable Computing {\&} Communications, Social Computing {\&} Networking, ISPA/BDCloud/SocialCom/SustainCom 2022, Melbourne, Australia, December 17-19, 2022}, pages = {147--154}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/ISPA-BDCloud-SocialCom-SustainCom57177.2022.00026}, doi = {10.1109/ISPA-BDCLOUD-SOCIALCOM-SUSTAINCOM57177.2022.00026}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ispa/JamilN22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/DmitrenkoMZ22, author = {Andrei Dmitrenko and Mauro M. Masiero and Nicola Zamboni}, editor = {Ender Konukoglu and Bjoern H. Menze and Archana Venkataraman and Christian F. Baumgartner and Qi Dou and Shadi Albarqouni}, title = {Comparing representations of biological data learned with different {AI} paradigms, augmenting and cropping strategies}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2022, 6-8 July 2022, Zurich, Switzerland}, series = {Proceedings of Machine Learning Research}, volume = {172}, pages = {353--369}, publisher = {{PMLR}}, year = {2022}, url = {https://proceedings.mlr.press/v172/dmitrenko22a.html}, timestamp = {Fri, 17 Feb 2023 16:29:10 +0100}, biburl = {https://dblp.org/rec/conf/midl/DmitrenkoMZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mlcb/LalchandRDKSLMT22, author = {Vidhi Lalchand and Aditya Ravuri and Emma Dann and Natsuhiko Kumasaka and Dinithi Sumanaweera and Rik G. H. Lindeboom and Shaista Madad and Sarah A. Teichmann and Neil D. Lawrence}, editor = {David A. Knowles and Sara Mostafavi and Su{-}In Lee}, title = {Modelling Technical and Biological Effects in scRNA-seq data with Scalable GPLVMs}, booktitle = {Machine Learning in Computational Biology, 21-22 November 2022, Online}, series = {Proceedings of Machine Learning Research}, volume = {200}, pages = {46--60}, publisher = {{PMLR}}, year = {2022}, url = {https://proceedings.mlr.press/v200/lalchand22a.html}, timestamp = {Tue, 05 Sep 2023 17:08:45 +0200}, biburl = {https://dblp.org/rec/conf/mlcb/LalchandRDKSLMT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/QianFLL22, author = {Kun Qian and Shiwei Fu and Hongwei Li and Wei Vivian Li}, editor = {Itsik Pe'er}, title = {A Novel Matrix Factorization Model for Interpreting Single-Cell Gene Expression from Biologically Heterogeneous Data}, booktitle = {Research in Computational Molecular Biology - 26th Annual International Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13278}, pages = {353--355}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-04749-7\_25}, doi = {10.1007/978-3-031-04749-7\_25}, timestamp = {Tue, 31 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/recomb/QianFLL22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2203-03708, author = {Cheng Hua and Dandan Wang}, title = {Biological, Family and Cultural Predictors of Personality Structure analysis based on personality prediction models constructed by open data source}, journal = {CoRR}, volume = {abs/2203.03708}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2203.03708}, doi = {10.48550/ARXIV.2203.03708}, eprinttype = {arXiv}, eprint = {2203.03708}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2203-03708.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2203-04107, author = {Andrei Dmitrenko and Mauro M. Masiero and Nicola Zamboni}, title = {Comparing representations of biological data learned with different {AI} paradigms, augmenting and cropping strategies}, journal = {CoRR}, volume = {abs/2203.04107}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2203.04107}, doi = {10.48550/ARXIV.2203.04107}, eprinttype = {arXiv}, eprint = {2203.04107}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2203-04107.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2207-00812, author = {Magdalena Wysocka and Oskar Wysocki and Marie Zufferey and D{\'{o}}nal Landers and Andr{\'{e}} Freitas}, title = {Biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data}, journal = {CoRR}, volume = {abs/2207.00812}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2207.00812}, doi = {10.48550/ARXIV.2207.00812}, eprinttype = {arXiv}, eprint = {2207.00812}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2207-00812.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2208-04720, author = {Richard Tj{\"{o}}rnhammar}, title = {Clustering Optimisation Method for Highly Connected Biological Data}, journal = {CoRR}, volume = {abs/2208.04720}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2208.04720}, doi = {10.48550/ARXIV.2208.04720}, eprinttype = {arXiv}, eprint = {2208.04720}, timestamp = {Wed, 17 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2208-04720.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2209-06716, author = {Vidhi Lalchand and Aditya Ravuri and Emma Dann and Natsuhiko Kumasaka and Dinithi Sumanaweera and Rik G. H. Lindeboom and Shaista Madad and Sarah A. Teichmann and Neil D. Lawrence}, title = {Modelling Technical and Biological Effects in scRNA-seq data with Scalable GPLVMs}, journal = {CoRR}, volume = {abs/2209.06716}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2209.06716}, doi = {10.48550/ARXIV.2209.06716}, eprinttype = {arXiv}, eprint = {2209.06716}, timestamp = {Tue, 27 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2209-06716.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2211-02537, author = {Nicholas Pellegrino and Zahra Gharaee and Paul W. Fieguth}, title = {Machine Learning Challenges of Biological Factors in Insect Image Data}, journal = {CoRR}, volume = {abs/2211.02537}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2211.02537}, doi = {10.48550/ARXIV.2211.02537}, eprinttype = {arXiv}, eprint = {2211.02537}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2211-02537.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Zobolas21, author = {John Zobolas}, title = {Software implementations allowing new approaches toward data analysis, modeling and curation of biological knowledge for Systems Medicine}, school = {Norwegian University of Science and Technology, Trondheim, Norway}, year = {2021}, url = {https://hdl.handle.net/11250/2987882}, timestamp = {Sat, 17 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Zobolas21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/dnb/Becker21a, author = {Katinka Becker}, title = {Logical Analysis of Biological Data}, school = {Free University of Berlin, Germany}, year = {2021}, url = {https://refubium.fu-berlin.de/handle/fub188/31607}, urn = {urn:nbn:de:kobv:188-refubium-31607-4}, timestamp = {Thu, 04 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/dnb/Becker21a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/ethos/Hathway21, author = {Pamela Hathway}, title = {Biologically-inspired machine learning approaches to large-scale neural data analysis}, school = {Imperial College London, {UK}}, year = {2021}, url = {https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.824937}, doi = {10.25560/86622}, timestamp = {Thu, 27 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/ethos/Hathway21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/Andrieu21, author = {Pierre Andrieu}, title = {Passage {\`{a}} l'{\'{e}}chelle, propri{\'{e}}t{\'{e}}s et qualit{\'{e}} des algorithmes de classements consensuels pour les donn{\'{e}}es biologiques massives. (Scalability, features and quality aspects of consensus algorithms for big biological data sets)}, school = {University of Paris-Saclay, France}, year = {2021}, url = {https://tel.archives-ouvertes.fr/tel-03335281}, timestamp = {Thu, 06 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/hal/Andrieu21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/Cabeli21, author = {Vincent Cabeli}, title = {Learning causal graphs from continuous or mixed datasets of biological or clinical interest. (Apprentissage de graphes causaux {\`{a}} partir de donn{\'{e}}es continues ou mixtes d'int{\'{e}}r{\^{e}}t biologique ou clinique)}, school = {Sorbonne University, Paris, France}, year = {2021}, url = {https://tel.archives-ouvertes.fr/tel-03693627}, timestamp = {Fri, 15 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/hal/Cabeli21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/il/Anavy21, author = {Leon Anavy}, title = {Synthetic {DNA} libraries and their applications in data storage and biological assays}, school = {Technion - Israel Institute of Technology, Israel}, year = {2021}, url = {https://www.cs.technion.ac.il/users/wwwb/cgi-bin/tr-info.cgi/2021/PHD/PHD-2021-02}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/il/Anavy21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/it/Ceddia21, author = {Gaia Ceddia}, title = {Computational methods for data-driven predictions and understanding of biological interactions}, school = {Polytechnic University of Milan, Italy}, year = {2021}, url = {https://hdl.handle.net/10589/177064}, timestamp = {Wed, 12 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/it/Ceddia21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/us/Chan21, author = {Jeffrey Chan}, title = {Scalable Machine Learning Algorithms for Biological Sequence Data}, school = {University of California, Berkeley, {USA}}, year = {2021}, url = {https://www.escholarship.org/uc/item/792188hb}, timestamp = {Fri, 10 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/us/Chan21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/aai/TooM21, author = {Jingwei Too and Seyedali Mirjalili}, title = {General Learning Equilibrium Optimizer: {A} New Feature Selection Method for Biological Data Classification}, journal = {Appl. Artif. Intell.}, volume = {35}, number = {3}, pages = {247--263}, year = {2021}, url = {https://doi.org/10.1080/08839514.2020.1861407}, doi = {10.1080/08839514.2020.1861407}, timestamp = {Tue, 02 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/aai/TooM21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/adac/ParvasidehR21, author = {Parvaneh Parvasideh and Mansoor Rezghi}, title = {A novel dictionary learning method based on total least squares approach with application in high dimensional biological data}, journal = {Adv. Data Anal. Classif.}, volume = {15}, number = {3}, pages = {575--597}, year = {2021}, url = {https://doi.org/10.1007/s11634-020-00417-4}, doi = {10.1007/S11634-020-00417-4}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/adac/ParvasidehR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/asc/MaatoukABD21, author = {Ons Ma{\^{a}}touk and Wassim Ayadi and Hend Bouziri and B{\'{e}}atrice Duval}, title = {Evolutionary Local Search Algorithm for the biclustering of gene expression data based on biological knowledge}, journal = {Appl. Soft Comput.}, volume = {104}, pages = {107177}, year = {2021}, url = {https://doi.org/10.1016/j.asoc.2021.107177}, doi = {10.1016/J.ASOC.2021.107177}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/asc/MaatoukABD21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ToureFNVK21, author = {Vasundra Tour{\'{e}} and {\AA}smund Flobak and Anna Niarakis and Steven Vercruysse and Martin Kuiper}, title = {The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling}, journal = {Briefings Bioinform.}, volume = {22}, number = {4}, year = {2021}, url = {https://doi.org/10.1093/bib/bbaa390}, doi = {10.1093/BIB/BBAA390}, timestamp = {Wed, 01 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/ToureFNVK21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WenYDLWW21, author = {Zhongqi Wen and Cheng Yan and Guihua Duan and Suning Li and Fang{-}Xiang Wu and Jianxin Wang}, title = {A survey on predicting microbe-disease associations: biological data and computational methods}, journal = {Briefings Bioinform.}, volume = {22}, number = {3}, year = {2021}, url = {https://doi.org/10.1093/bib/bbaa157}, doi = {10.1093/BIB/BBAA157}, timestamp = {Tue, 13 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/WenYDLWW21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/AhmedK21, author = {Mahmoud Ahmed and Deok Ryong Kim}, title = {{LINPS:} a database for cancer-cell-specific perturbations of biological networks}, journal = {Database J. Biol. Databases Curation}, volume = {2021}, year = {2021}, url = {https://doi.org/10.1093/database/baab048}, doi = {10.1093/DATABASE/BAAB048}, timestamp = {Mon, 25 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/AhmedK21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GuoDJZYCYRTC21, author = {Wen{-}Ping Guo and Xiao{-}Bao Ding and Jie Jin and Hai{-}bo Zhang and Qiao{-}lei Yang and Peng{-}Cheng Chen and Heng Yao and Li Ruan and Yu{-}Tian Tao and Xin Chen}, title = {{HIR} {V2:} a human interactome resource for the biological interpretation of differentially expressed genes via gene set linkage analysis}, journal = {Database J. Biol. Databases Curation}, volume = {2021}, year = {2021}, url = {https://doi.org/10.1093/database/baab009}, doi = {10.1093/DATABASE/BAAB009}, timestamp = {Tue, 11 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodb/GuoDJZYCYRTC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DragerHBBCCHKNM21, author = {Andreas Dr{\"{a}}ger and Tom{\'{a}}s Helikar and Matteo Barberis and Marc R. Birtwistle and Laurence Calzone and Claudine Chaouiya and Jan Hasenauer and Jonathan R. Karr and Anna Niarakis and Mar{\'{\i}}a Rodr{\'{\i}}guez Mart{\'{\i}}nez and Julio Saez{-}Rodriguez and Juilee Thakar}, title = {SysMod: the {ISCB} community for data-driven computational modelling and multi-scale analysis of biological systems}, journal = {Bioinform.}, volume = {37}, number = {21}, pages = {3702--3706}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab229}, doi = {10.1093/BIOINFORMATICS/BTAB229}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DragerHBBCCHKNM21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Ovando-VazquezC21, author = {Cesar{\'{e}} Ovando{-}V{\'{a}}zquez and Daniel C{\'{a}}zarez{-}Garc{\'{\i}}a and Robert Winkler}, title = {Target-Decoy MineR for determining the biological relevance of variables in noisy datasets}, journal = {Bioinform.}, volume = {37}, number = {20}, pages = {3595--3603}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab369}, doi = {10.1093/BIOINFORMATICS/BTAB369}, timestamp = {Wed, 15 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Ovando-VazquezC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangLKLWZYXYC21, author = {Le Zhang and Guangdi Liu and Meijing Kong and Tingting Li and Dan Wu and Xiaobo Zhou and Chuanwei Yang and Lei Xia and Zhenzhou Yang and Luonan Chen}, title = {Revealing dynamic regulations and the related key proteins of myeloma-initiating cells by integrating experimental data into a systems biological model}, journal = {Bioinform.}, volume = {37}, number = {11}, pages = {1554--1561}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btz542}, doi = {10.1093/BIOINFORMATICS/BTZ542}, timestamp = {Fri, 06 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLKLWZYXYC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AlexandreCH21, author = {Leonardo Alexandre and Rafael S. Costa and Rui Henriques}, title = {{DI2:} prior-free and multi-item discretization of biological data and its applications}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {426}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-04329-8}, doi = {10.1186/S12859-021-04329-8}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AlexandreCH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FerravanteMPCLD21, author = {Carlo Ferravante and Domenico Memoli and Domenico A. Palumbo and Paolo Ciaramella and Antonio Di Loria and Ylenia D'Agostino and Giovanni Nassa and Francesca Rizzo and Roberta Tarallo and Alessandro Weisz and Giorgio Giurato}, title = {{HOME-BIO} (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis}, journal = {{BMC} Bioinform.}, volume = {22-S}, number = {7}, pages = {106}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-04004-y}, doi = {10.1186/S12859-021-04004-Y}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/FerravanteMPCLD21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GuM21, author = {Shawn Gu and Tijana Milenkovic}, title = {Data-driven biological network alignment that uses topological, sequence, and functional information}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {34}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-03971-6}, doi = {10.1186/S12859-021-03971-6}, timestamp = {Thu, 11 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GuM21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KavranC21, author = {Andrew J. Kavran and Aaron Clauset}, title = {Denoising large-scale biological data using network filters}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {157}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-04075-x}, doi = {10.1186/S12859-021-04075-X}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KavranC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LicheriBBG21, author = {Nicola Licheri and Vincenzo Bonnici and Marco Beccuti and Rosalba Giugno}, title = {{GRAPES-DD:} exploiting decision diagrams for index-driven search in biological graph databases}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {209}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-04129-0}, doi = {10.1186/S12859-021-04129-0}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LicheriBBG21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WillforssSL21, author = {Jakob Willforss and Valentina Siino and Fredrik Levander}, title = {OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {107}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-04043-5}, doi = {10.1186/S12859-021-04043-5}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WillforssSL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cin/ShariatmadarF21, author = {Zahra Sadat Shariatmadar and Karim Faez}, title = {A Data-Driven and Biologically Inspired Preprocessing Scheme to Improve Visual Object Recognition}, journal = {Comput. Intell. Neurosci.}, volume = {2021}, pages = {6699335:1--6699335:13}, year = {2021}, url = {https://doi.org/10.1155/2021/6699335}, doi = {10.1155/2021/6699335}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cin/ShariatmadarF21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cogcom/MahmudKMH21, author = {Mufti Mahmud and M. Shamim Kaiser and T. Martin McGinnity and Amir Hussain}, title = {Deep Learning in Mining Biological Data}, journal = {Cogn. Comput.}, volume = {13}, number = {1}, pages = {1--33}, year = {2021}, url = {https://doi.org/10.1007/s12559-020-09773-x}, doi = {10.1007/S12559-020-09773-X}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cogcom/MahmudKMH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/datasci/Hulsen21, author = {Tim Hulsen}, title = {BioVenn - an {R} and Python package for the comparison and visualization of biological lists using area-proportional Venn diagrams}, journal = {Data Sci.}, volume = {4}, number = {1}, pages = {51--61}, year = {2021}, url = {https://doi.org/10.3233/ds-210032}, doi = {10.3233/DS-210032}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/datasci/Hulsen21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/entropy/YousefKB21, author = {Malik Yousef and Abhishek Kumar and Burcu Bakir{-}Gungor}, title = {Application of Biological Domain Knowledge Based Feature Selection on Gene Expression Data}, journal = {Entropy}, volume = {23}, number = {1}, pages = {2}, year = {2021}, url = {https://doi.org/10.3390/e23010002}, doi = {10.3390/E23010002}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/entropy/YousefKB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fdata/NguyenBYWC21, author = {Thanh Nguyen and Samuel Bharti and Zongliang Yue and Christopher D. Willey and Jake Y. Chen}, title = {Statistical Enrichment Analysis of Samples: {A} General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples}, journal = {Frontiers Big Data}, volume = {4}, pages = {725276}, year = {2021}, url = {https://doi.org/10.3389/fdata.2021.725276}, doi = {10.3389/FDATA.2021.725276}, timestamp = {Sun, 22 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fdata/NguyenBYWC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fdata/NguyenBYWC21a, author = {Thanh Nguyen and Samuel Bharti and Zongliang Yue and Christopher D. Willey and Jake Y. Chen}, title = {Corrigendum: Statistical Enrichment Analysis of Samples: {A} General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples}, journal = {Frontiers Big Data}, volume = {4}, pages = {804141}, year = {2021}, url = {https://doi.org/10.3389/fdata.2021.804141}, doi = {10.3389/FDATA.2021.804141}, timestamp = {Sun, 22 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fdata/NguyenBYWC21a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fgcs/AndrieuBBCDPV21, author = {Pierre Andrieu and Bryan Brancotte and Laurent Bulteau and Sarah Cohen{-}Boulakia and Alain Denise and Adeline Pierrot and St{\'{e}}phane Vialette}, title = {Efficient, robust and effective rank aggregation for massive biological datasets}, journal = {Future Gener. Comput. Syst.}, volume = {124}, pages = {406--421}, year = {2021}, url = {https://doi.org/10.1016/j.future.2021.06.013}, doi = {10.1016/J.FUTURE.2021.06.013}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fgcs/AndrieuBBCDPV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fgcs/LiuXY21, author = {Yi Liu and Jie Xu and Weijie Yi}, title = {Massive-scale carbon pollution control and biological fusion under big data context}, journal = {Future Gener. Comput. Syst.}, volume = {118}, pages = {257--262}, year = {2021}, url = {https://doi.org/10.1016/j.future.2021.01.002}, doi = {10.1016/J.FUTURE.2021.01.002}, timestamp = {Tue, 23 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/fgcs/LiuXY21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/CuiLL21, author = {Ya Cui and Jason Sheng Li and Wei Li}, title = {From Reads to Insights: Integrative Pipelines for Biological Interpretation of ATAC-seq Data}, journal = {Genom. Proteom. Bioinform.}, volume = {19}, number = {4}, pages = {519--521}, year = {2021}, url = {https://doi.org/10.1016/j.gpb.2021.06.002}, doi = {10.1016/J.GPB.2021.06.002}, timestamp = {Fri, 29 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/gpb/CuiLL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ida/LiPLK21, author = {Bentian Li and Dechang Pi and Yunxia Lin and Izhar Ahmed Khan}, title = {Biogc: {A} novel framework for biological network classification via machine learning}, journal = {Intell. Data Anal.}, volume = {25}, number = {5}, pages = {1153--1168}, year = {2021}, url = {https://doi.org/10.3233/IDA-205240}, doi = {10.3233/IDA-205240}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ida/LiPLK21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijaci/ChowdhuryKRPHAC21, author = {Linkon Chowdhury and Md Sarwar Kamal and Shamim Hasnat Ripon and Sazia Parvin and Omar Khadeer Hussain and Amira S. Ashour and Bristy Roy Chowdhury}, title = {A Biological Data-Driven Mining Technique by Using Hybrid Classifiers With Rough Set}, journal = {Int. J. Ambient Comput. Intell.}, volume = {12}, number = {3}, pages = {123--139}, year = {2021}, url = {https://doi.org/10.4018/IJACI.2021070106}, doi = {10.4018/IJACI.2021070106}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijaci/ChowdhuryKRPHAC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbi/KosvyraNC21, author = {Alexandra Kosvyra and Eleni Ntzioni and Ioanna Chouvarda}, title = {Network analysis with biological data of cancer patients: {A} scoping review}, journal = {J. Biomed. Informatics}, volume = {120}, pages = {103873}, year = {2021}, url = {https://doi.org/10.1016/j.jbi.2021.103873}, doi = {10.1016/J.JBI.2021.103873}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbi/KosvyraNC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/Thapa021, author = {Ishwor Thapa and Hesham Ali}, title = {A Multiomics Graph Database System for Biological Data Integration and Cancer Informatics}, journal = {J. Comput. Biol.}, volume = {28}, number = {2}, pages = {209--219}, year = {2021}, url = {https://doi.org/10.1089/cmb.2020.0231}, doi = {10.1089/CMB.2020.0231}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/Thapa021.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcc/CrowetBBSLD21, author = {Jean{-}Marc Crowet and S{\'{e}}bastien Buchoux and Nicolas Belloy and Catherine Sarazin and Laurence Lins and Manuel Dauchez}, title = {{LIMONADA:} {A} database dedicated to the simulation of biological membranes}, journal = {J. Comput. Chem.}, volume = {42}, number = {14}, pages = {1028--1033}, year = {2021}, url = {https://doi.org/10.1002/jcc.26511}, doi = {10.1002/JCC.26511}, timestamp = {Sun, 16 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcc/CrowetBBSLD21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jois/BegumSCM21, author = {Shemim Begum and Ram Sarkar and Debasis Chakraborty and Ujjwal Maulik}, title = {Identification of Biomarker on Biological and Gene Expression data using Fuzzy Preference Based Rough Set}, journal = {J. Intell. Syst.}, volume = {30}, number = {1}, pages = {130--141}, year = {2021}, url = {https://doi.org/10.1515/jisys-2019-0034}, doi = {10.1515/JISYS-2019-0034}, timestamp = {Fri, 14 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jois/BegumSCM21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BurleyBBB0CCDCD21, author = {Stephen K. Burley and Charmi Bhikadiya and Chunxiao Bi and Sebastian Bittrich and Li Chen and Gregg V. Crichlow and Cole H. Christie and Kenneth Dalenberg and Luigi Di Costanzo and Jose M. Duarte and Shuchismita Dutta and Zukang Feng and Sai Ganesan and David S. Goodsell and Sutapa Ghosh and Rachel Kramer Green and Vladimir Guranovic and Dmytro Guzenko and Brian P. Hudson and Catherine L. Lawson and Yuhe Liang and Robert Lowe and Harry Namkoong and Ezra Peisach and Irina Persikova and Christopher Randle and Alexander S. Rose and Yana Rose and Andrej Sali and Joan Segura and Monica Sekharan and Chenghua Shao and Yi{-}Ping Tao and Maria Voigt and John D. Westbrook and Jasmine Young and Christine Zardecki and Marina Zhuravleva}, title = {{RCSB} Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D437--D451}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa1038}, doi = {10.1093/NAR/GKAA1038}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BurleyBBB0CCDCD21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/npjdm/WalJLNRRTW0FMSS21, author = {Douwe van der Wal and Iny Jhun and Israa Laklouk and Jeffrey J. Nirschl and Lara Richer and Rebecca Rojansky and Talent Theparee and Joshua Wheeler and J{\"{o}}rg Sander and Felix Y. Feng and Osama Mohamad and Silvio Savarese and Richard Socher and Andre Esteva}, title = {Biological data annotation via a human-augmenting AI-based labeling system}, journal = {npj Digit. Medicine}, volume = {4}, year = {2021}, url = {https://doi.org/10.1038/s41746-021-00520-6}, doi = {10.1038/S41746-021-00520-6}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/npjdm/WalJLNRRTW0FMSS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/GuoYSLZZ21, author = {Weifeng Guo and Xiangtian Yu and Qianqian Shi and Jing Liang and Shao{-}Wu Zhang and Tao Zeng}, title = {Performance assessment of sample-specific network control methods for bulk and single-cell biological data analysis}, journal = {PLoS Comput. Biol.}, volume = {17}, number = {5}, year = {2021}, url = {https://doi.org/10.1371/journal.pcbi.1008962}, doi = {10.1371/JOURNAL.PCBI.1008962}, timestamp = {Tue, 20 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/GuoYSLZZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/HattabRH21, author = {Georges Hattab and Theresa{-}Marie Rhyne and Dominik Heider}, title = {Correction: Ten simple rules to colorize biological data visualization}, journal = {PLoS Comput. Biol.}, volume = {17}, number = {4}, year = {2021}, url = {https://doi.org/10.1371/journal.pcbi.1008901}, doi = {10.1371/JOURNAL.PCBI.1008901}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/HattabRH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LimQ21, author = {Hong Seo Lim and Peng Qiu}, title = {{JSOM:} Jointly-evolving self-organizing maps for alignment of biological datasets and identification of related clusters}, journal = {PLoS Comput. Biol.}, volume = {17}, number = {3}, year = {2021}, url = {https://doi.org/10.1371/journal.pcbi.1008804}, doi = {10.1371/JOURNAL.PCBI.1008804}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/LimQ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WaschkeHATRHS21, author = {Johannes Waschke and Mario Hlawitschka and Kerim Anlas and Vikas Trivedi and Ingo Roeder and Jan Huisken and Nico Scherf}, title = {linus: Conveniently explore, share, and present large-scale biological trajectory data in a web browser}, journal = {PLoS Comput. Biol.}, volume = {17}, number = {11}, year = {2021}, url = {https://doi.org/10.1371/journal.pcbi.1009503}, doi = {10.1371/JOURNAL.PCBI.1009503}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/WaschkeHATRHS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/Neuwald21, author = {Andrew F. Neuwald}, title = {Reflections on the quest to obtain biological information from genomic data}, journal = {Quant. Biol.}, volume = {9}, number = {3}, pages = {251--254}, year = {2021}, url = {https://doi.org/10.15302/j-qb-021-0254}, doi = {10.15302/J-QB-021-0254}, timestamp = {Sun, 07 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/quanbio/Neuwald21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ral/BirdPFEF21, author = {Jordan J. Bird and Michael Pritchard and Antonio Fratini and Anik{\'{o}} Ek{\'{a}}rt and Diego R. Faria}, title = {Synthetic Biological Signals Machine-Generated by {GPT-2} Improve the Classification of {EEG} and {EMG} Through Data Augmentation}, journal = {{IEEE} Robotics Autom. Lett.}, volume = {6}, number = {2}, pages = {3498--3504}, year = {2021}, url = {https://doi.org/10.1109/LRA.2021.3056355}, doi = {10.1109/LRA.2021.3056355}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ral/BirdPFEF21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/remotesensing/KerfootHSRRBGCS21, author = {W. Charles Kerfoot and Martin M. Hobmeier and Gary Swain and Robert Regis and Varsha K. Raman and Colin N. Brooks and Amanda Grimm and Chris Cook and Robert A. Shuchman and Molly K. Reif}, title = {Coastal Remote Sensing: Merging Physical, Chemical, and Biological Data as Tailings Drift onto Buffalo Reef, Lake Superior}, journal = {Remote. Sens.}, volume = {13}, number = {13}, pages = {2434}, year = {2021}, url = {https://doi.org/10.3390/rs13132434}, doi = {10.3390/RS13132434}, timestamp = {Thu, 20 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/remotesensing/KerfootHSRRBGCS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/remotesensing/RieserVTS21, author = {Jakob Rieser and Maik Veste and Michael Thiel and Sarah Sch{\"{o}}nbrodt{-}Stitt}, title = {Coverage and Rainfall Response of Biological Soil Crusts Using Multi-Temporal Sentinel-2 Data in a Central European Temperate Dry Acid Grassland}, journal = {Remote. Sens.}, volume = {13}, number = {16}, pages = {3093}, year = {2021}, url = {https://doi.org/10.3390/rs13163093}, doi = {10.3390/RS13163093}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/remotesensing/RieserVTS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/simods/CowenDHMW21, author = {Lenore Cowen and Kapil Devkota and Xiaozhe Hu and James M. Murphy and Kaiyi Wu}, title = {Diffusion State Distances: Multitemporal Analysis, Fast Algorithms, and Applications to Biological Networks}, journal = {{SIAM} J. Math. Data Sci.}, volume = {3}, number = {1}, pages = {142--170}, year = {2021}, url = {https://doi.org/10.1137/20M1324089}, doi = {10.1137/20M1324089}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/simods/CowenDHMW21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tbd/ZuckerPTBKBTHON21, author = {Jeremy Zucker and Kaushal Paneri and Sara Mohammad Taheri and Somya Bhargava and Pallavi Kolambkar and Craig Bakker and Jeremy Teuton and Charles Tapley Hoyt and Kristie L. Oxford and Robert Osazuwa Ness and Olga Vitek}, title = {Leveraging Structured Biological Knowledge for Counterfactual Inference: {A} Case Study of Viral Pathogenesis}, journal = {{IEEE} Trans. Big Data}, volume = {7}, number = {1}, pages = {25--37}, year = {2021}, url = {https://doi.org/10.1109/TBDATA.2021.3050680}, doi = {10.1109/TBDATA.2021.3050680}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tbd/ZuckerPTBKBTHON21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tit/BergerWY21, author = {Bonnie Berger and Michael S. Waterman and Yun William Yu}, title = {Levenshtein Distance, Sequence Comparison and Biological Database Search}, journal = {{IEEE} Trans. Inf. Theory}, volume = {67}, number = {6}, pages = {3287--3294}, year = {2021}, url = {https://doi.org/10.1109/TIT.2020.2996543}, doi = {10.1109/TIT.2020.2996543}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tit/BergerWY21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tkde/MinLZ21, author = {Wenwen Min and Juan Liu and Shihua Zhang}, title = {Group-Sparse {SVD} Models via {\textdollar}L{\_}1{\textdollar}L1- and {\textdollar}L{\_}0{\textdollar}L0-norm Penalties and their Applications in Biological Data}, journal = {{IEEE} Trans. Knowl. Data Eng.}, volume = {33}, number = {2}, pages = {536--550}, year = {2021}, url = {https://doi.org/10.1109/TKDE.2019.2932063}, doi = {10.1109/TKDE.2019.2932063}, timestamp = {Wed, 04 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tkde/MinLZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/aaaiss/HeHC21, author = {Xiaolong He and Qizhi He and Jiun{-}Shyan Chen}, editor = {Jonghyun Lee and Eric F. Darve and Peter K. Kitanidis and Michael W. Mahoney and Anuj Karpatne and Matthew W. Farthing and Tyler J. Hesser}, title = {Deep Autoencoders for Nonlinear Physics-Constrained Data-Driven Computational Framework with Application to Biological Tissue Modeling}, booktitle = {Proceedings of the {AAAI} 2021 Spring Symposium on Combining Artificial Intelligence and Machine Learning with Physical Sciences, Stanford, CA, USA, March 22nd - to - 24th, 2021}, series = {{CEUR} Workshop Proceedings}, volume = {2964}, publisher = {CEUR-WS.org}, year = {2021}, url = {https://ceur-ws.org/Vol-2964/article\_67.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:39 +0100}, biburl = {https://dblp.org/rec/conf/aaaiss/HeHC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/KesimogluB21, author = {Ziynet Nesibe Kesimoglu and Serdar Bozdag}, editor = {Hongmei Jiang and Xiuzhen Huang and Jiajie Zhang}, title = {{SUPREME:} a cancer subtype prediction methodology integrating multiple biological datatypes using graph convolutional neural networks}, booktitle = {{BCB} '21: 12th {ACM} International Conference on Bioinformatics, Computational Biology and Health Informatics, Gainesville, Florida, USA, August 1-4, 2021}, pages = {83:1}, publisher = {{ACM}}, year = {2021}, url = {https://doi.org/10.1145/3459930.3470853}, doi = {10.1145/3459930.3470853}, timestamp = {Wed, 04 Aug 2021 13:34:07 +0200}, biburl = {https://dblp.org/rec/conf/bcb/KesimogluB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/ZhangTYLLLXGXFZ21, author = {Shilong Zhang and Yue Tang and Jing Yan and Linye Li and Tong Li and Jixiang Li and Peilin Xie and Yuanshuai Gu and Jiakang Xu and Zaiwen Feng and Wen Zhang and Jingbo Xia and Wolfgang Mayer and Hong{-}Yu Zhang and Guang{-}Cun He and Keqing He}, editor = {Yufei Huang and Lukasz A. Kurgan and Feng Luo and Xiaohua Hu and Yidong Chen and Edward R. Dougherty and Andrzej Kloczkowski and Yaohang Li}, title = {A Graph-based Approach for Integrating Biological Heterogeneous Data Based on Connecting Ontology}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2021, Houston, TX, USA, December 9-12, 2021}, pages = {600--607}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/BIBM52615.2021.9669700}, doi = {10.1109/BIBM52615.2021.9669700}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bibm/ZhangTYLLLXGXFZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibb/CruzVH21, author = {Beatriz Garcia Santa Cruz and Carlos Vega and Frank Hertel}, editor = {Davide Chicco and Angelo M. Facchiano and Erica Tavazzi and Enrico Longato and Martina Vettoretti and Anna Bernasconi and Simone Avesani and Paolo Cazzaniga}, title = {The Need of Standardised Metadata to Encode Causal Relationships: Towards Safer Data-Driven Machine Learning Biological Solutions}, booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics - 17th International Meeting, {CIBB} 2021, Virtual Event, November 15-17, 2021, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {13483}, pages = {200--216}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-031-20837-9\_16}, doi = {10.1007/978-3-031-20837-9\_16}, timestamp = {Mon, 05 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cibb/CruzVH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cikm/BeccutiBG21, author = {Marco Beccuti and Vincenzo Bonnici and Rosalba Giugno}, editor = {Gianluca Demartini and Guido Zuccon and J. Shane Culpepper and Zi Huang and Hanghang Tong}, title = {{MODIMO:} Workshop on Multi-Omics Data Integration for Modelling Biological Systems}, booktitle = {{CIKM} '21: The 30th {ACM} International Conference on Information and Knowledge Management, Virtual Event, Queensland, Australia, November 1 - 5, 2021}, pages = {4870--4871}, publisher = {{ACM}}, year = {2021}, url = {https://doi.org/10.1145/3459637.3482038}, doi = {10.1145/3459637.3482038}, timestamp = {Tue, 16 Aug 2022 23:04:38 +0200}, biburl = {https://dblp.org/rec/conf/cikm/BeccutiBG21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cikm/LicheriABGB21, author = {Nicola Licheri and Elvio Amparone and Vincenzo Bonnici and Rosalba Giugno and Marco Beccuti}, editor = {Gao Cong and Maya Ramanath}, title = {An Entropy Heuristic to Optimize Decision Diagrams for Index-driven Search in Biological Graph Databases}, booktitle = {Proceedings of the {CIKM} 2021 Workshops co-located with 30th {ACM} International Conference on Information and Knowledge Management {(CIKM} 2021), Gold Coast, Queensland, Australia, November 1-5, 2021}, series = {{CEUR} Workshop Proceedings}, volume = {3052}, publisher = {CEUR-WS.org}, year = {2021}, url = {https://ceur-ws.org/Vol-3052/paper13.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:33 +0100}, biburl = {https://dblp.org/rec/conf/cikm/LicheriABGB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmis/MartsenyukKSBBW21, author = {Vasyl P. Martsenyuk and Aleksandra Klos{-}Witkowska and Andriy Sverstiuk and Oksana Bahrii{-}Zaiats and Marcin Bernas and Krzysztof Witos}, editor = {Sergey Subbotin}, title = {Intelligent Big Data System Based on Scientific Machine Learning of Cyber-physical Systems of Medical and Biological Processes}, booktitle = {Proceedings of The Fourth International Workshop on Computer Modeling and Intelligent Systems (CMIS-2021), Zaporizhzhia, Ukraine, April 27, 2021}, series = {{CEUR} Workshop Proceedings}, volume = {2864}, pages = {34--48}, publisher = {CEUR-WS.org}, year = {2021}, url = {https://ceur-ws.org/Vol-2864/paper4.pdf}, timestamp = {Fri, 10 Mar 2023 16:23:18 +0100}, biburl = {https://dblp.org/rec/conf/cmis/MartsenyukKSBBW21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/MelanitisNLSFN21, author = {Nikos Melanitis and Giorgos Nakopoulos and Antonio Lozano and Cristina Soto{-}S{\'{a}}nchez and Eduardo Fern{\'{a}}ndez and Konstantina S. Nikita}, title = {Using Biologically-inspired Image Features to Model Retinal Response: Evidence from Biological Datasets}, booktitle = {43rd Annual International Conference of the {IEEE} Engineering in Medicine {\&} Biology Society, {EMBC} 2021, Mexico, November 1-5, 2021}, pages = {3378--3381}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/EMBC46164.2021.9629869}, doi = {10.1109/EMBC46164.2021.9629869}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/embc/MelanitisNLSFN21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/etfa/ZhengMGHG21, author = {Tao Zheng and Zuyao Meng and Qing Gu and Fei Huang and Mikael Gidlund}, title = {A Preliminary Prototype Based on Biological Mimicry for Hardware Data Acquisition}, booktitle = {26th {IEEE} International Conference on Emerging Technologies and Factory Automation, {ETFA} 2021, Vasteras, Sweden, September 7-10, 2021}, pages = {1--4}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/ETFA45728.2021.9613604}, doi = {10.1109/ETFA45728.2021.9613604}, timestamp = {Tue, 07 Dec 2021 09:17:59 +0100}, biburl = {https://dblp.org/rec/conf/etfa/ZhengMGHG21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icaai/LiuS21, author = {Zheng Liu and Jiayuan Song}, title = {Comparison of Tree-based Feature Selection Algorithms on Biological Omics Dataset}, booktitle = {{ICAAI} 2021: The 5th International Conference on Advances in Artificial Intelligence, Virtual Event, United Kingdom, November 20 - 22, 2021}, pages = {165--169}, publisher = {{ACM}}, year = {2021}, url = {https://doi.org/10.1145/3505711.3505734}, doi = {10.1145/3505711.3505734}, timestamp = {Mon, 11 Apr 2022 10:07:07 +0200}, biburl = {https://dblp.org/rec/conf/icaai/LiuS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icaip/SongL21, author = {Jiayuan Song and Zheng Liu}, title = {Comparison of Norm-Based Feature Selection Methods on Biological Omics Data}, booktitle = {{ICAIP} 2021: 5th International Conference on Advances in Image Processing, Chengdu, China, November 12 - 14, 2021}, pages = {109--112}, publisher = {{ACM}}, year = {2021}, url = {https://doi.org/10.1145/3502827.3502845}, doi = {10.1145/3502827.3502845}, timestamp = {Tue, 04 Jul 2023 18:11:43 +0200}, biburl = {https://dblp.org/rec/conf/icaip/SongL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ictc/LeePL21a, author = {Jiwoo Lee and SoHyeon Park and Eun{-}Kyu Lee}, title = {Behavior-based Authentication using User Biological Data to IoT Device having Touchscreen}, booktitle = {International Conference on Information and Communication Technology Convergence, {ICTC} 2021, Jeju Island, Korea, Republic of, October 20-22, 2021}, pages = {750--752}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/ICTC52510.2021.9620865}, doi = {10.1109/ICTC52510.2021.9620865}, timestamp = {Fri, 10 Dec 2021 08:22:29 +0100}, biburl = {https://dblp.org/rec/conf/ictc/LeePL21a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iddm/KomlevoiKLZ21, author = {Oleksandr Komlevoi and Nataliia O. Komleva and Vira Liubchenko and Svitlana Zinovatna}, editor = {Nataliya Shakhovska and Addisson Salazar and Ivan Izonin and Jaime Campos}, title = {Biological Data Mining and Its Applications in Pulmonology}, booktitle = {Proceedings of the 4th International Conference on Informatics {\&} Data-Driven Medicine, Valencia, Spain, November 19 - 21, 2021}, series = {{CEUR} Workshop Proceedings}, volume = {3038}, pages = {44--53}, publisher = {CEUR-WS.org}, year = {2021}, url = {https://ceur-ws.org/Vol-3038/paper5.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:41 +0100}, biburl = {https://dblp.org/rec/conf/iddm/KomlevoiKLZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ijcnn/XiangHLTW21, author = {Mingrong Xiang and Jingyu Hou and Wei Luo and Wenjing Tao and Deshou Wang}, title = {Impute Gene Expression Missing Values via Biological Networks: Optimal Fusion of Data and Knowledge}, booktitle = {International Joint Conference on Neural Networks, {IJCNN} 2021, Shenzhen, China, July 18-22, 2021}, pages = {1--8}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/IJCNN52387.2021.9533355}, doi = {10.1109/IJCNN52387.2021.9533355}, timestamp = {Thu, 06 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ijcnn/XiangHLTW21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/intellisys/YanD21, author = {Runze Yan and Afsaneh Doryab}, editor = {Kohei Arai}, title = {Towards a Computational Framework for Automated Discovery and Modeling of Biological Rhythms from Wearable Data Streams}, booktitle = {Intelligent Systems and Applications - Proceedings of the 2021 Intelligent Systems Conference, IntelliSys 2021, Amsterdam, The Netherlands, 2-3 September, 2021, Volume 3}, series = {Lecture Notes in Networks and Systems}, volume = {296}, pages = {643--661}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-82199-9\_44}, doi = {10.1007/978-3-030-82199-9\_44}, timestamp = {Thu, 12 Aug 2021 13:45:57 +0200}, biburl = {https://dblp.org/rec/conf/intellisys/YanD21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipaw/WittnerHMGGSPFM21, author = {Rudolf Wittner and Petr Holub and Heimo M{\"{u}}ller and J{\"{o}}rg Geiger and Carole A. Goble and Stian Soiland{-}Reyes and Luca Pireddu and Francesca Frexia and Cecilia Mascia and Elliot Fairweather and Jason R. Swedlow and Josh Moore and Caterina Strambio{-}De{-}Castillia and David Grunwald and Hiroki Nakae}, editor = {Boris Glavic and Vanessa Braganholo and David Koop}, title = {{ISO} 23494: Biotechnology - Provenance Information Model for Biological Specimen And Data}, booktitle = {Provenance and Annotation of Data and Processes - 8th and 9th International Provenance and Annotation Workshop, {IPAW} 2020 + {IPAW} 2021, Virtual Event, July 19-22, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12839}, pages = {222--225}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-80960-7\_16}, doi = {10.1007/978-3-030-80960-7\_16}, timestamp = {Wed, 29 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ipaw/WittnerHMGGSPFM21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/jowo/ShafieiLTOGRK21, author = {Fateme Shafiei and Felicitas L{\"{o}}ffler and Sven Thiel and Kobkaew Opasjumruskit and Denis Grabiger and Pauline Rauh and Birgitta K{\"{o}}nig{-}Ries}, editor = {Emilio M. Sanfilippo and Oliver Kutz and Nicolas Troquard and Torsten Hahmann and Claudio Masolo and Robert Hoehndorf and Randi Vita and Maria M. Hedblom and Guendalina Righetti and Dusan Sormaz and Walter Terkaj and Tiago Prince Sales and Sergio de Cesare and Frederik Gailly and Giancarlo Guizzardi and Mark Lycett and Chris Partridge and Oscar Pastor and Daniel Be{\ss}ler and Stefano Borgo and Mohammed Diab and Aldo Gangemi and Alberto Olivares Alarcos and Mihai Pomarlan and Robert Porzel and Ludger Jansen and Mathias Brochhausen and Daniele Porello and Pawel Garbacz and Selja Sepp{\"{a}}l{\"{a}} and Michael Gr{\"{u}}ninger and Amanda Vizedom and Damion M. Dooley and Robert Warren and Hande K{\"{u}}{\c{c}}{\"{u}}k{-}McGinty and Matthew Lange and Alsayed Algergawy and Naouel Karam and Friederike Klan and Franck Michel and Ilaria Rosati}, title = {[Dai: Si] - {A} Modular Dataset Retrieval Framework with a Semantic Search for Biological Data}, booktitle = {Proceedings of the Joint Ontology Workshops 2021 Episode {VII:} The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems {(FOIS} 2021), and the 12th International Conference on Biomedical Ontologies {(ICBO} 2021), Bolzano, Italy, September 11-18, 2021}, series = {{CEUR} Workshop Proceedings}, volume = {2969}, publisher = {CEUR-WS.org}, year = {2021}, url = {https://ceur-ws.org/Vol-2969/paper4-s4biodiv.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:57 +0100}, biburl = {https://dblp.org/rec/conf/jowo/ShafieiLTOGRK21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/memea/FirouzehCR21, author = {Fereshteh Fakhar Firouzeh and John W. Chinneck and Sreeraman Rajan}, title = {Biological Data Classification via Faster MAXimum Feasible Subsystem Algorithm}, booktitle = {{IEEE} International Symposium on Medical Measurements and Applications, MeMeA 2021, Lausanne, Switzerland, June 23-25, 2021}, pages = {1--5}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/MeMeA52024.2021.9478696}, doi = {10.1109/MEMEA52024.2021.9478696}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/memea/FirouzehCR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mtsr/InizanFGSS21, author = {Olivier Inizan and Vincent Fromion and Anne Goelzer and Fatiha Sa{\"{\i}}s and Danai Symeonidou}, editor = {Emmanouel Garoufallou and Mar{\'{\i}}a Antonia Ovalle{-}Perandones and Andreas Vlachidis}, title = {An Ontology to Structure Biological Data: The Contribution of Mathematical Models}, booktitle = {Metadata and Semantic Research - 15th International Conference, {MTSR} 2021, Virtual Event, November 29 - December 3, 2021, Revised Selected Papers}, series = {Communications in Computer and Information Science}, volume = {1537}, pages = {57--64}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-98876-0\_5}, doi = {10.1007/978-3-030-98876-0\_5}, timestamp = {Wed, 18 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/mtsr/InizanFGSS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ola/VaginayBS21, author = {Ath{\'{e}}na{\"{\i}}s Vaginay and Taha Boukhobza and Malika Sma{\"{\i}}l{-}Tabbone}, editor = {Bernab{\'{e}} Dorronsoro and Lionel Amodeo and Mario Pavone and Patricia Ruiz}, title = {Automatic Synthesis of Boolean Networks from Biological Knowledge and Data}, booktitle = {Optimization and Learning - 4th International Conference, {OLA} 2021, Catania, Italy, June 21-23, 2021, Proceedings}, series = {Communications in Computer and Information Science}, volume = {1443}, pages = {156--170}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-85672-4\_12}, doi = {10.1007/978-3-030-85672-4\_12}, timestamp = {Wed, 01 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ola/VaginayBS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/spml/Tong21, author = {Fu Tong}, title = {A Comprehensive Comparison of Neural Network-Based Feature Selection Methods in Biological Omics Datasets}, booktitle = {{SPML} 2021: 4th International Conference on Signal Processing and Machine Learning, Beijing, China, August 18 - 20, 2021}, pages = {77--81}, publisher = {{ACM}}, year = {2021}, url = {https://doi.org/10.1145/3483207.3483220}, doi = {10.1145/3483207.3483220}, timestamp = {Sun, 31 Oct 2021 10:40:42 +0100}, biburl = {https://dblp.org/rec/conf/spml/Tong21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2103-08335, author = {Xuequan Lu and Yihao Wang and Sheldon Fung and Xue Qing}, title = {I-Nema: {A} Biological Image Dataset for Nematode Recognition}, journal = {CoRR}, volume = {abs/2103.08335}, year = {2021}, url = {https://arxiv.org/abs/2103.08335}, eprinttype = {arXiv}, eprint = {2103.08335}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2103-08335.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2107-02168, author = {Dongqi Fu and Jingrui He}, title = {{DPPIN:} {A} Biological Dataset of Dynamic Protein-Protein Interaction Networks}, journal = {CoRR}, volume = {abs/2107.02168}, year = {2021}, url = {https://arxiv.org/abs/2107.02168}, eprinttype = {arXiv}, eprint = {2107.02168}, timestamp = {Wed, 07 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2107-02168.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2107-05388, author = {Vahidullah Tac and Vivek D. Sree and Manuel K. Rausch and Adrian Buganza Tepole}, title = {Data-driven Modeling of the Mechanical Behavior of Anisotropic Soft Biological Tissue}, journal = {CoRR}, volume = {abs/2107.05388}, year = {2021}, url = {https://arxiv.org/abs/2107.05388}, eprinttype = {arXiv}, eprint = {2107.05388}, timestamp = {Tue, 15 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2107-05388.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2107-13822, author = {Erik Esche and Torben Talis and Joris Weigert and Gerardo Brand{-}Rihm and Byungjun You and Christian Hoffmann and Jens{-}Uwe Repke}, title = {Semi-supervised Learning for Data-driven Soft-sensing of Biological and Chemical Processes}, journal = {CoRR}, volume = {abs/2107.13822}, year = {2021}, url = {https://arxiv.org/abs/2107.13822}, eprinttype = {arXiv}, eprint = {2107.13822}, timestamp = {Tue, 03 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2107-13822.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2109-06177, author = {Runze Yan and Afsaneh Doryab}, title = {Towards a Computational Framework for Automated Discovery and Modeling of Biological Rhythms from Wearable Data Streams}, journal = {CoRR}, volume = {abs/2109.06177}, year = {2021}, url = {https://arxiv.org/abs/2109.06177}, eprinttype = {arXiv}, eprint = {2109.06177}, timestamp = {Wed, 22 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2109-06177.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2110-12058, author = {Satoshi Kume and Hiroshi Masuya and Mitsuyo Maeda and Mitsuo Suga and Yosky Kataoka and Norio Kobayashi}, title = {Development of Semantic Web-based Imaging Database for Biological Morphome}, journal = {CoRR}, volume = {abs/2110.12058}, year = {2021}, url = {https://arxiv.org/abs/2110.12058}, eprinttype = {arXiv}, eprint = {2110.12058}, timestamp = {Fri, 29 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2110-12058.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2112-07173, author = {Binxu Wang and David Mayo and Arturo Deza and Andrei Barbu and Colin Conwell}, title = {On the use of Cortical Magnification and Saccades as Biological Proxies for Data Augmentation}, journal = {CoRR}, volume = {abs/2112.07173}, year = {2021}, url = {https://arxiv.org/abs/2112.07173}, eprinttype = {arXiv}, eprint = {2112.07173}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2112-07173.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dagstuhl-reports/KleinMNZ21, author = {Karsten Klein and Georgeta Elisabeta Marai and Kay Katja Nieselt and Blaz Zupan}, title = {Visualization of Biological Data - From Analysis to Communication (Dagstuhl Seminar 21401)}, journal = {Dagstuhl Reports}, volume = {11}, number = {9}, pages = {1--27}, year = {2021}, url = {https://doi.org/10.4230/DagRep.11.9.1}, doi = {10.4230/DAGREP.11.9.1}, timestamp = {Wed, 20 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/dagstuhl-reports/KleinMNZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/au/Lee20, author = {Stuart Lee}, title = {Fluent statistical computing interfaces for biological data analysis}, school = {Monash University, Australia}, year = {2020}, url = {https://doi.org/10.26180/13174949.v1}, doi = {10.26180/13174949.V1}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/au/Lee20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Chen20n, author = {Junfang Chen}, title = {Biologically informed risk scoring in schizophrenia based on genome-wide omics data}, school = {Heidelberg University, Germany}, year = {2020}, url = {https://archiv.ub.uni-heidelberg.de/volltextserver/28981/}, doi = {10.11588/HEIDOK.00028981}, urn = {urn:nbn:de:bsz:16-heidok-289817}, timestamp = {Tue, 13 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Chen20n.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/ethos/Robinson20, author = {Scott W. Robinson}, title = {The integration of large biological and clinical datasets towards the understanding of human disease}, school = {University of Glasgow, {UK}}, year = {2020}, url = {https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.824662}, timestamp = {Tue, 05 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/ethos/Robinson20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/gr/Vlastaridis20, author = {Panayotis Vlastaridis}, title = {Bioinformatics analysis, management and organization of biological data related to post-translational regulation}, school = {University of Thessaly, Greece}, year = {2020}, url = {http://hdl.handle.net/10442/hedi/47953}, timestamp = {Wed, 17 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/gr/Vlastaridis20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ans/MalekZG20, author = {Maria Malek and Simone Zorzan and Mohammad Ghoniem}, title = {A methodology for multilayer networks analysis in the context of open and private data: biological application}, journal = {Appl. Netw. Sci.}, volume = {5}, number = {1}, pages = {41}, year = {2020}, url = {https://doi.org/10.1007/s41109-020-00277-z}, doi = {10.1007/S41109-020-00277-Z}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ans/MalekZG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/CowmanCGK20, author = {Tyler Cowman and Mustafa Coskun and Ananth Grama and Mehmet Koyut{\"{u}}rk}, title = {Integrated querying and version control of context-specific biological networks}, journal = {Database J. Biol. Databases Curation}, volume = {2020}, year = {2020}, url = {https://doi.org/10.1093/database/baaa018}, doi = {10.1093/DATABASE/BAAA018}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/CowmanCGK20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/SpoorWSCACHHJSW20, author = {Shawna Spoor and Connor Wytko and Brian Soto and Ming Chen and Abdullah Almsaeed and Bradford Condon and Nic Herndon and Heidi Hough and Sook Jung and Meg Staton and Jill L. Wegrzyn and Dorrie Main and F. Alex Feltus and Stephen P. Ficklin}, title = {Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases}, journal = {Database J. Biol. Databases Curation}, volume = {2020}, year = {2020}, url = {https://doi.org/10.1093/database/baaa032}, doi = {10.1093/DATABASE/BAAA032}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/SpoorWSCACHHJSW20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/WuWYT20, author = {Wei{-}Sheng Wu and Lai{-}Ji Wang and Han{-}Chen Yen and Yan Yuan Tseng}, title = {{YQFC:} a web tool to compare quantitative biological features between two yeast gene lists}, journal = {Database J. Biol. Databases Curation}, volume = {2020}, year = {2020}, url = {https://doi.org/10.1093/database/baaa076}, doi = {10.1093/DATABASE/BAAA076}, timestamp = {Sat, 25 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodb/WuWYT20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/XuCZDLZ20, author = {Tingjun Xu and Weiming Chen and Junhong Zhou and Jingfang Dai and Yingyong Li and Yingli Zhao}, title = {{NPBS} database: a chemical data resource with relational data between natural products and biological sources}, journal = {Database J. Biol. Databases Curation}, volume = {2020}, year = {2020}, url = {https://doi.org/10.1093/database/baaa102}, doi = {10.1093/DATABASE/BAAA102}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/XuCZDLZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BoileauHD20, author = {Philippe Boileau and Nima S. Hejazi and Sandrine Dudoit}, title = {Exploring high-dimensional biological data with sparse contrastive principal component analysis}, journal = {Bioinform.}, volume = {36}, number = {11}, pages = {3422--3430}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa176}, doi = {10.1093/BIOINFORMATICS/BTAA176}, timestamp = {Fri, 25 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BoileauHD20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DemeoB20, author = {Benjamin Demeo and Bonnie Berger}, title = {Hopper: a mathematically optimal algorithm for sketching biological data}, journal = {Bioinform.}, volume = {36}, number = {Supplement-1}, pages = {i236--i241}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa408}, doi = {10.1093/BIOINFORMATICS/BTAA408}, timestamp = {Fri, 25 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DemeoB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GardiniGDC20, author = {Erika Gardini and Federico M. Giorgi and Sergio Decherchi and Andrea Cavalli}, title = {Spathial: an {R} package for the evolutionary analysis of biological data}, journal = {Bioinform.}, volume = {36}, number = {17}, pages = {4664--4667}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa273}, doi = {10.1093/BIOINFORMATICS/BTAA273}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GardiniGDC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PikeKPTMRPS20, author = {Jeremy A. Pike and Abdullah O. Khan and Chiara Pallini and Steven G. Thomas and Markus Mund and Jonas Ries and Natalie S. Poulter and Iain B. Styles}, title = {Topological data analysis quantifies biological nano-structure from single molecule localization microscopy}, journal = {Bioinform.}, volume = {36}, number = {5}, pages = {1614--1621}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btz788}, doi = {10.1093/BIOINFORMATICS/BTZ788}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PikeKPTMRPS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SeifertGJSM20, author = {Stephan Seifert and Sven Gundlach and Olaf Junge and Silke Szymczak and Luigi Martelli}, title = {Integrating biological knowledge and gene expression data using pathway-guided random forests: a benchmarking study}, journal = {Bioinform.}, volume = {36}, number = {15}, pages = {4301--4308}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa483}, doi = {10.1093/BIOINFORMATICS/BTAA483}, timestamp = {Tue, 16 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertGJSM20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YaoQH20, author = {Ruijie Yao and Jiaqiang Qian and Qiang Huang}, title = {Deep-learning with synthetic data enables automated picking of cryo-EM particle images of biological macromolecules}, journal = {Bioinform.}, volume = {36}, number = {4}, pages = {1252--1259}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btz728}, doi = {10.1093/BIOINFORMATICS/BTZ728}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YaoQH20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AcharyaCP20a, author = {Sudipta Acharya and Laizhong Cui and Yi Pan}, title = {Multi-view feature selection for identifying gene markers: a diversified biological data driven approach}, journal = {{BMC} Bioinform.}, volume = {21-S}, number = {18}, pages = {483}, year = {2020}, url = {https://doi.org/10.1186/s12859-020-03810-0}, doi = {10.1186/S12859-020-03810-0}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AcharyaCP20a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WuSYWLZ20, author = {Wenting Wu and Lei Song and Yongtao Yang and Jianxin Wang and Hongtu Liu and Le Zhang}, title = {Exploring the dynamics and interplay of human papillomavirus and cervical tumorigenesis by integrating biological data into a mathematical model}, journal = {{BMC} Bioinform.}, volume = {21-S}, number = {7}, pages = {152}, year = {2020}, url = {https://doi.org/10.1186/s12859-020-3454-5}, doi = {10.1186/S12859-020-3454-5}, timestamp = {Mon, 08 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WuSYWLZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/ZhangCZLZZZZ20, author = {Tianyue Zhang and Haowu Chang and Borui Zhang and Sifei Liu and Tianheng Zhao and Enshuang Zhao and Hengyi Zhao and Hao Zhang}, title = {Transboundary Pathogenic microRNA Analysis Framework for Crop Fungi Driven by Biological Big Data and Artificial Intelligence Model}, journal = {Comput. Biol. Chem.}, volume = {89}, pages = {107401}, year = {2020}, url = {https://doi.org/10.1016/j.compbiolchem.2020.107401}, doi = {10.1016/J.COMPBIOLCHEM.2020.107401}, timestamp = {Sat, 22 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/candc/ZhangCZLZZZZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cce/SunB20, author = {Weike Sun and Richard D. Braatz}, title = {Opportunities in tensorial data analytics for chemical and biological manufacturing processes}, journal = {Comput. Chem. Eng.}, volume = {143}, pages = {107099}, year = {2020}, url = {https://doi.org/10.1016/j.compchemeng.2020.107099}, doi = {10.1016/J.COMPCHEMENG.2020.107099}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cce/SunB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmmm/WeylandTNBUPLFS20, author = {Mathias S. Weyland and Pauline Thumser{-}Henner and Katarzyna J. Nytko and Carla Rohrer Bley and Simone Ulzega and Alke Petri{-}Fink and Marco Lattuada and Rudolf M. F{\"{u}}chslin and Stephan Scheidegger}, title = {Holistic View on Cell Survival and {DNA} Damage: How Model-Based Data Analysis Supports Exploration of Dynamics in Biological Systems}, journal = {Comput. Math. Methods Medicine}, volume = {2020}, pages = {5972594:1--5972594:11}, year = {2020}, url = {https://doi.org/10.1155/2020/5972594}, doi = {10.1155/2020/5972594}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cmmm/WeylandTNBUPLFS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/el/YoonK20, author = {Ayoung Yoon and Youngseek Kim}, title = {The role of data-reuse experience in biological scientists' data sharing: an empirical analysis}, journal = {Electron. Libr.}, volume = {38}, number = {1}, pages = {186--208}, year = {2020}, url = {https://doi.org/10.1108/EL-06-2019-0146}, doi = {10.1108/EL-06-2019-0146}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/el/YoonK20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/entropy/DasR20, author = {Samarendra Das and Shesh N. Rai}, title = {Statistical Approach for Biologically Relevant Gene Selection from High-Throughput Gene Expression Data}, journal = {Entropy}, volume = {22}, number = {11}, pages = {1205}, year = {2020}, url = {https://doi.org/10.3390/e22111205}, doi = {10.3390/E22111205}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/entropy/DasR20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/ChenBEJLMORSZV20, author = {Qingyu Chen and Ramona Britto and Ivan Erill and Constance J. Jeffery and Arthur Liberzon and Michele Magrane and Jun{-}ichi Onami and Marc Robinson{-}Rechavi and Jana Sponarova and Justin Zobel and Karin Verspoor}, title = {Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases}, journal = {Genom. Proteom. Bioinform.}, volume = {18}, number = {2}, pages = {91--103}, year = {2020}, url = {https://doi.org/10.1016/j.gpb.2018.11.006}, doi = {10.1016/J.GPB.2018.11.006}, timestamp = {Thu, 17 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/gpb/ChenBEJLMORSZV20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijncr/VaniKKPA20, author = {Koneru Suvarna Vani and K. Praveen Kumar and Geethika Kodali and Naveen Pothineni and Sri Chaitanya Aravapalli}, title = {An Exploration of Mixed {DNA} Samples by Forensic Biological Data}, journal = {Int. J. Nat. Comput. Res.}, volume = {9}, number = {2}, pages = {1--13}, year = {2020}, url = {https://doi.org/10.4018/IJNCR.2020040101}, doi = {10.4018/IJNCR.2020040101}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijncr/VaniKKPA20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijoci/BoufenaraBB20, author = {Mohamed Nadjib Boufenara and Mahmoud Boufa{\"{\i}}da and Mohamed Lamine Berkane}, title = {A Prediction Approach Based on Self-Training and Deep Learning for Biological Data}, journal = {Int. J. Organ. Collect. Intell.}, volume = {10}, number = {4}, pages = {50--64}, year = {2020}, url = {https://doi.org/10.4018/IJOCI.2020100104}, doi = {10.4018/IJOCI.2020100104}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijoci/BoufenaraBB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jifs/AhmadJKK20, author = {Shabir Ahmad and Faisal Jamil and Azimbek Khudoyberdiev and Dohyeun Kim}, title = {Accident risk prediction and avoidance in intelligent semi-autonomous vehicles based on road safety data and driver biological behaviours}, journal = {J. Intell. Fuzzy Syst.}, volume = {38}, number = {4}, pages = {4591--4601}, year = {2020}, url = {https://doi.org/10.3233/JIFS-191375}, doi = {10.3233/JIFS-191375}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jifs/AhmadJKK20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jifs/ShuklaPGRT20, author = {Alok Kumar Shukla and Sanjeev Kumar Pippal and Srishti Gupta and B. Ramachandra Reddy and Diwakar Tripathi}, title = {Knowledge discovery in medical and biological datasets by integration of Relief-F and correlation feature selection techniques}, journal = {J. Intell. Fuzzy Syst.}, volume = {38}, number = {5}, pages = {6637--6648}, year = {2020}, url = {https://doi.org/10.3233/JIFS-179743}, doi = {10.3233/JIFS-179743}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jifs/ShuklaPGRT20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jmihi/AhmadIB20, author = {Iftikhar Ahmad and Muhammad Javed Iqbal and Mohammad Basheri}, title = {Biological Data Classification and Analysis Using Convolutional Neural Network}, journal = {J. Medical Imaging Health Informatics}, volume = {10}, number = {10}, pages = {2459--2465}, year = {2020}, url = {https://doi.org/10.1166/jmihi.2020.31792459}, doi = {10.1166/JMIHI.2020.31792459}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jmihi/AhmadIB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jmihi/AhmadIB20a, author = {Iftikhar Ahmad and Muhammad Javed Iqbal and Mohammad Basheri}, title = {Biological Data Classification and Analysis Using Convolutional Neural Network}, journal = {J. Medical Imaging Health Informatics}, volume = {10}, number = {10}, pages = {2459--2465}, year = {2020}, url = {https://doi.org/10.1166/jmihi.2020.3179}, doi = {10.1166/JMIHI.2020.3179}, timestamp = {Wed, 24 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jmihi/AhmadIB20a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jms/AlbahriHAAZZAAK20, author = {Ahmed Shihab Albahri and Rula A. Hamid and Jwan K. Alwan and Z. T. Al{-}qays and A. A. Zaidan and B. B. Zaidan and Osamah Shihab Albahri and Abdullah Hussein Alamoodi and Jamal Mawlood Khlaf and E. M. Almahdi and Eman Thabet and Suha M. Hadi and K. I. Mohammed and M. A. Alsalem and Jameel R. Al{-}Obaidi and H. T. Madhloom}, title = {Role of biological Data Mining and Machine Learning Techniques in Detecting and Diagnosing the Novel Coronavirus {(COVID-19):} {A} Systematic Review}, journal = {J. Medical Syst.}, volume = {44}, number = {7}, pages = {122}, year = {2020}, url = {https://doi.org/10.1007/s10916-020-01582-x}, doi = {10.1007/S10916-020-01582-X}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jms/AlbahriHAAZZAAK20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jossw/KellyB20, author = {Simon Thomas Kelly and Michael A. Black}, title = {graphsim: An {R} package for simulating gene expression data from graph structures of biological pathways}, journal = {J. Open Source Softw.}, volume = {5}, number = {51}, pages = {2161}, year = {2020}, url = {https://doi.org/10.21105/joss.02161}, doi = {10.21105/JOSS.02161}, timestamp = {Wed, 17 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jossw/KellyB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nn/BaxterL20, author = {Robert A. Baxter and William B. Levy}, title = {Constructing multilayered neural networks with sparse, data-driven connectivity using biologically-inspired, complementary, homeostatic mechanisms}, journal = {Neural Networks}, volume = {122}, pages = {68--93}, year = {2020}, url = {https://doi.org/10.1016/j.neunet.2019.09.025}, doi = {10.1016/J.NEUNET.2019.09.025}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nn/BaxterL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/patterns/ShahLLCGCHZ20, author = {Najeebullah Shah and Jiaqi Li and Fanhong Li and Wenchang Chen and Haoxiang Gao and Sijie Chen and Kui Hua and Xuegong Zhang}, title = {An Experiment on \emph{Ab Initio} Discovery of Biological Knowledge from scRNA-Seq Data Using Machine Learning}, journal = {Patterns}, volume = {1}, number = {5}, pages = {100071}, year = {2020}, url = {https://doi.org/10.1016/j.patter.2020.100071}, doi = {10.1016/J.PATTER.2020.100071}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/patterns/ShahLLCGCHZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/HattabRH20, author = {Georges Hattab and Theresa{-}Marie Rhyne and Dominik Heider}, title = {Ten simple rules to colorize biological data visualization}, journal = {PLoS Comput. Biol.}, volume = {16}, number = {10}, year = {2020}, url = {https://doi.org/10.1371/journal.pcbi.1008259}, doi = {10.1371/JOURNAL.PCBI.1008259}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/HattabRH20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LagergrenNBSF20, author = {John H. Lagergren and John T. Nardini and Ruth E. Baker and Matthew J. Simpson and Kevin B. Flores}, title = {Biologically-informed neural networks guide mechanistic modeling from sparse experimental data}, journal = {PLoS Comput. Biol.}, volume = {16}, number = {12}, year = {2020}, url = {https://doi.org/10.1371/journal.pcbi.1008462}, doi = {10.1371/JOURNAL.PCBI.1008462}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/LagergrenNBSF20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/TerkelsenKP20, author = {Thilde Terkelsen and Anders Krogh and Elena Papaleo}, title = {CAncer bioMarker Prediction Pipeline {(CAMPP)} - {A} standardized framework for the analysis of quantitative biological data}, journal = {PLoS Comput. Biol.}, volume = {16}, number = {3}, year = {2020}, url = {https://doi.org/10.1371/journal.pcbi.1007665}, doi = {10.1371/JOURNAL.PCBI.1007665}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/TerkelsenKP20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/remotesensing/GauthreauxD20, author = {Sidney Gauthreaux and Robert Diehl}, title = {Discrimination of Biological Scatterers in Polarimetric Weather Radar Data: Opportunities and Challenges}, journal = {Remote. Sens.}, volume = {12}, number = {3}, pages = {545}, year = {2020}, url = {https://doi.org/10.3390/rs12030545}, doi = {10.3390/RS12030545}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/remotesensing/GauthreauxD20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tbd/ZhangLZSKYJ20, author = {Wenlu Zhang and Rongjian Li and Tao Zeng and Qian Sun and Sudhir Kumar and Jieping Ye and Shuiwang Ji}, title = {Deep Model Based Transfer and Multi-Task Learning for Biological Image Analysis}, journal = {{IEEE} Trans. Big Data}, volume = {6}, number = {2}, pages = {322--333}, year = {2020}, url = {https://doi.org/10.1109/TBDATA.2016.2573280}, doi = {10.1109/TBDATA.2016.2573280}, timestamp = {Thu, 18 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tbd/ZhangLZSKYJ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuLZSL20, author = {Jian Liu and Qiuru Liu and Lei Zhang and Shuhui Su and Yongzhuang Liu}, title = {Enabling Massive XML-Based Biological Data Management in HBase}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {17}, number = {6}, pages = {1994--2004}, year = {2020}, url = {https://doi.org/10.1109/TCBB.2019.2915811}, doi = {10.1109/TCBB.2019.2915811}, timestamp = {Sun, 23 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuLZSL20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiuNW20, author = {Ye Liu and Michael K. Ng and Stephen Wu}, title = {Multi-Domain Networks Association for Biological Data Using Block Signed Graph Clustering}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {17}, number = {2}, pages = {435--448}, year = {2020}, url = {https://doi.org/10.1109/TCBB.2018.2848904}, doi = {10.1109/TCBB.2018.2848904}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiuNW20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MarczykJPP20, author = {Michal Marczyk and Roman Jaksik and Andrzej Polanski and Joanna Polanska}, title = {GaMRed - Adaptive Filtering of High-Throughput Biological Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {17}, number = {1}, pages = {149--157}, year = {2020}, url = {https://doi.org/10.1109/TCBB.2018.2858825}, doi = {10.1109/TCBB.2018.2858825}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MarczykJPP20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/Hoard20, author = {Brittany R. Hoard}, editor = {Taesung Park and Young{-}Rae Cho and Xiaohua Hu and Illhoi Yoo and Hyun Goo Woo and Jianxin Wang and Julio C. Facelli and Seungyoon Nam and Mingon Kang}, title = {Biological Rule-Based Modeling of Experimental Cell Secretion Data}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2020, Virtual Event, South Korea, December 16-19, 2020}, pages = {1245--1252}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/BIBM49941.2020.9313526}, doi = {10.1109/BIBM49941.2020.9313526}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bibm/Hoard20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cikm/WalshMN20, author = {Brian Walsh and Sameh K. Mohamed and V{\'{\i}}t Nov{\'{a}}cek}, editor = {Mathieu d'Aquin and Stefan Dietze and Claudia Hauff and Edward Curry and Philippe Cudr{\'{e}}{-}Mauroux}, title = {BioKG: {A} Knowledge Graph for Relational Learning On Biological Data}, booktitle = {{CIKM} '20: The 29th {ACM} International Conference on Information and Knowledge Management, Virtual Event, Ireland, October 19-23, 2020}, pages = {3173--3180}, publisher = {{ACM}}, year = {2020}, url = {https://doi.org/10.1145/3340531.3412776}, doi = {10.1145/3340531.3412776}, timestamp = {Fri, 25 Dec 2020 01:15:14 +0100}, biburl = {https://dblp.org/rec/conf/cikm/WalshMN20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cogsci/TsvetkovMEB20, author = {Christian Tsvetkov and Gaurav Malhotra and Benjamin Evans and Jeffrey S. Bowers}, editor = {Stephanie Denison and Michael L. Mack and Yang Xu and Blair C. Armstrong}, title = {Adding biological constraints to deep neural networks reduces their capacity to learn unstructured data}, booktitle = {Proceedings of the 42th Annual Meeting of the Cognitive Science Society - Developing a Mind: Learning in Humans, Animals, and Machines, CogSci 2020, virtual, July 29 - August 1, 2020}, publisher = {cognitivesciencesociety.org}, year = {2020}, url = {https://cogsci.mindmodeling.org/2020/papers/0559/index.html}, timestamp = {Thu, 25 Apr 2024 16:58:16 +0200}, biburl = {https://dblp.org/rec/conf/cogsci/TsvetkovMEB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/HaKBLLS20, author = {Junhyoung Ha and Soonkyum Kim and YaeJun Baik and Dohee Lee and Woosub Lee and SeungBeum Suh}, title = {Artificial Neural Network enabling Clinically Meaningful Biological Image Data Generation}, booktitle = {42nd Annual International Conference of the {IEEE} Engineering in Medicine {\&} Biology Society, {EMBC} 2020, Montreal, QC, Canada, July 20-24, 2020}, pages = {2404--2407}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/EMBC44109.2020.9176621}, doi = {10.1109/EMBC44109.2020.9176621}, timestamp = {Fri, 25 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/embc/HaKBLLS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/er/AgapitoC20, author = {Giuseppe Agapito and Mario Cannataro}, editor = {Georg Grossmann and Sudha Ram}, title = {Using BioPAX-Parser (BiP) to Annotate Lists of Biological Entities with Pathway Data}, booktitle = {Advances in Conceptual Modeling - {ER} 2020 Workshops CMAI, CMLS, CMOMM4FAIR, CoMoNoS, EmpER, Vienna, Austria, November 3-6, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12584}, pages = {92--101}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-65847-2\_9}, doi = {10.1007/978-3-030-65847-2\_9}, timestamp = {Sat, 09 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/er/AgapitoC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icann/UedaTN20, author = {Takaya Ueda and Yukako Tohsato and Ikuko Nishikawa}, editor = {Igor Farkas and Paolo Masulli and Stefan Wermter}, title = {Temporal Anomaly Detection by Deep Generative Models with Applications to Biological Data}, booktitle = {Artificial Neural Networks and Machine Learning - {ICANN} 2020 - 29th International Conference on Artificial Neural Networks, Bratislava, Slovakia, September 15-18, 2020, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {12396}, pages = {553--565}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-61609-0\_44}, doi = {10.1007/978-3-030-61609-0\_44}, timestamp = {Sat, 14 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icann/UedaTN20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbet/WangZWCF20, author = {Ningya Wang and Wenbin Zhou and Jiamin Wu and Shengjia Chen and Ziling Fan}, title = {Comparison of Penalty-based Feature Selection Approach on High Throughput Biological Data}, booktitle = {Proceedings of the 10th International Conference on Biomedical Engineering and Technology, {ICBET} 2020, Tokyo, Japan, September 15-18, 2020}, pages = {176--183}, publisher = {{ACM}}, year = {2020}, url = {https://doi.org/10.1145/3397391.3397404}, doi = {10.1145/3397391.3397404}, timestamp = {Tue, 02 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbet/WangZWCF20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbet/WuCZWF20, author = {Jiamin Wu and Shengjia Chen and Wenbin Zhou and Ningya Wang and Ziling Fan}, title = {Evaluation of Feature Selection Methods using Bagging and Boosting Ensemble Techniques on High Throughput Biological Data}, booktitle = {Proceedings of the 10th International Conference on Biomedical Engineering and Technology, {ICBET} 2020, Tokyo, Japan, September 15-18, 2020}, pages = {170--175}, publisher = {{ACM}}, year = {2020}, url = {https://doi.org/10.1145/3397391.3397403}, doi = {10.1145/3397391.3397403}, timestamp = {Tue, 02 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbet/WuCZWF20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccai/DengZCLQ20a, author = {Jianzhi Deng and Yuehan Zhou and Xiaohui Cheng and Tianyu Li and Chuling Qin}, title = {Biological Big Data Analysis of Competing Endogenous {RNA} Network and mRNA Biomarker in Liver Cancer}, booktitle = {{ICCAI} '20: 2020 6th International Conference on Computing and Artificial Intelligence, Tianjin, China, April 23-26, 2020}, pages = {94--98}, publisher = {{ACM}}, year = {2020}, url = {https://doi.org/10.1145/3404555.3404602}, doi = {10.1145/3404555.3404602}, timestamp = {Wed, 10 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccai/DengZCLQ20a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icpr/KokerCWTWCW20, author = {T. E. Koker and S. S. Chintapalli and S. Wang and Blake A. Talbot and D. Wainstock and Marcelo Cicconet and M. C. Walsh}, title = {On Identification and Retrieval of Near-Duplicate Biological Images: a New Dataset and Protocol}, booktitle = {25th International Conference on Pattern Recognition, {ICPR} 2020, Virtual Event / Milan, Italy, January 10-15, 2021}, pages = {3114--3121}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/ICPR48806.2021.9412849}, doi = {10.1109/ICPR48806.2021.9412849}, timestamp = {Thu, 30 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icpr/KokerCWTWCW20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ifip12/AlshammaryIMV20, author = {Miznah H. Alshammary and Costas S. Iliopoulos and Manal Mohamed and Fatima Vayani}, editor = {Ilias Maglogiannis and Lazaros Iliadis and Elias Pimenidis}, title = {Application and Algorithm: Maximal Motif Discovery for Biological Data in a Sliding Window}, booktitle = {Artificial Intelligence Applications and Innovations. {AIAI} 2020 {IFIP} {WG} 12.5 International Workshops - {MHDW} 2020 and 5G-PINE 2020, Neos Marmaras, Greece, June 5-7, 2020, Proceedings}, series = {{IFIP} Advances in Information and Communication Technology}, volume = {585}, pages = {213--224}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-49190-1\_19}, doi = {10.1007/978-3-030-49190-1\_19}, timestamp = {Mon, 28 Aug 2023 21:17:14 +0200}, biburl = {https://dblp.org/rec/conf/ifip12/AlshammaryIMV20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mm/Baird20, author = {Alice Baird}, editor = {Bj{\"{o}}rn W. Schuller and Iulia Lefter and Erik Cambria and Ioannis Kompatsiaris and Lukas Stappen}, title = {Extending Multimodal Emotion Recognition with Biological Signals: Presenting a Novel Dataset and Recent Findings}, booktitle = {MuSe'20: Proceedings of the 1st International on Multimodal Sentiment Analysis in Real-life Media Challenge and Workshop, Seattle, WA, USA, October 16, 2020}, pages = {7}, publisher = {{ACM}}, year = {2020}, url = {https://doi.org/10.1145/3423327.3423512}, doi = {10.1145/3423327.3423512}, timestamp = {Wed, 28 Oct 2020 16:13:13 +0100}, biburl = {https://dblp.org/rec/conf/mm/Baird20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/scisisis/ParkJJ20, author = {Sung Min Park and Junghyun Jung and Jong Wha Joanne Joo}, title = {Integrative Meta-analysis of Transcriptome Data for Unmasking Biological Mechanism of Idiopathic pulmonary fibrosis}, booktitle = {Joint 11th International Conference on Soft Computing and Intelligent Systems and 21st International Symposium on Advanced Intelligent Systems, {SCIS/ISIS} 2020, Hachijo Island, Japan, December 5-8, 2020}, pages = {1--3}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/SCISISIS50064.2020.9322727}, doi = {10.1109/SCISISIS50064.2020.9322727}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/scisisis/ParkJJ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/semco/AngeloIASOAHB20, author = {Rafaela M. Angelo and Andreia K. Io and Matheus P. Almeida and Rafael G. Silveira and Patr{\'{\i}}cia R. Oliveira and Jose J. P. Alcazar and K{\'{a}}thia Maria Hon{\'{o}}rio and Fernanda Bettanin}, title = {OntoQSAR: an Ontology for Interpreting Chemical and Biological Data in Quantitative Structure-Activity Relationship Studies}, booktitle = {{IEEE} 14th International Conference on Semantic Computing, {ICSC} 2020, San Diego, CA, USA, February 3-5, 2020}, pages = {203--206}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/ICSC.2020.00042}, doi = {10.1109/ICSC.2020.00042}, timestamp = {Wed, 08 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/semco/AngeloIASOAHB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/systor/KaplanYG20, author = {Roman Kaplan and Leonid Yavits and Ran Ginosar}, editor = {Bianca Schroeder and Danny Harnik}, title = {BioSEAL: In-Memory Biological Sequence Alignment Accelerator for Large-Scale Genomic Data}, booktitle = {{SYSTOR} 2020: The 13th {ACM} International Systems and Storage Conference, Haifa, Israel, October 13-15, 2020}, pages = {36--48}, publisher = {{ACM}}, year = {2020}, url = {https://doi.org/10.1145/3383669.3398279}, doi = {10.1145/3383669.3398279}, timestamp = {Mon, 15 Jun 2020 11:47:37 +0200}, biburl = {https://dblp.org/rec/conf/systor/KaplanYG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2001-08322, author = {Dinesh Singh and Makoto Yamada}, title = {FsNet: Feature Selection Network on High-dimensional Biological Data}, journal = {CoRR}, volume = {abs/2001.08322}, year = {2020}, url = {https://arxiv.org/abs/2001.08322}, eprinttype = {arXiv}, eprint = {2001.08322}, timestamp = {Tue, 28 Jan 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2001-08322.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2002-07064, author = {Michele Gentili and Leonardo Martini and Manuela Petti and Lorenzo Farina and Luca Becchetti}, title = {Biological Random Walks: integrating heterogeneous data in disease gene prioritization}, journal = {CoRR}, volume = {abs/2002.07064}, year = {2020}, url = {https://arxiv.org/abs/2002.07064}, eprinttype = {arXiv}, eprint = {2002.07064}, timestamp = {Tue, 03 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2002-07064.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2003-00108, author = {Mufti Mahmud and M. Shamim Kaiser and Amir Hussain}, title = {Deep Learning in Mining Biological Data}, journal = {CoRR}, volume = {abs/2003.00108}, year = {2020}, url = {https://arxiv.org/abs/2003.00108}, eprinttype = {arXiv}, eprint = {2003.00108}, timestamp = {Tue, 25 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2003-00108.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Watford19, author = {Sean Watford}, title = {Interoperability in Toxicology: Connecting Chemical, biological, and Complex disease Data}, school = {University of North Carolina, Chapel Hill, {USA}}, year = {2019}, url = {https://doi.org/10.17615/jtkk-d512}, doi = {10.17615/JTKK-D512}, timestamp = {Fri, 20 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Watford19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/Lima19, author = {Leandro Ishi Soares de Lima}, title = {De novo algorithms to identify patterns associated with biological events in de Bruijn graphs built from {NGS} data. (Algorithmes de novo pour l'identification de motifs associ{\'{e}}s {\`{a}} des {\'{e}}v{\'{e}}nements biologiques dans les graphes de De Bruijn construits {\`{a}} partir de donn{\'{e}}es {NGS)}}, school = {University of Lyon, France}, year = {2019}, url = {https://tel.archives-ouvertes.fr/tel-02280110}, timestamp = {Tue, 21 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/hal/Lima19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/Soret19, author = {Perrine Soret}, title = {R{\'{e}}gression p{\'{e}}nalis{\'{e}}e de type Lasso pour l'analyse de donn{\'{e}}es biologiques de grande dimension : application {\`{a}} la charge virale du {VIH} censur{\'{e}}e par une limite de quantification et aux donn{\'{e}}es compositionnelles du microbiote. (Penalized Lasso regression for the analysis of high-dimensional biological data: application to {HIV} viral load censored by a limit of quantification and to microbiota compositional data)}, school = {University of Bordeaux, France}, year = {2019}, url = {https://tel.archives-ouvertes.fr/tel-02425113}, timestamp = {Mon, 28 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/hal/Soret19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/access/ChenLC19a, author = {Shih{-}Yeh Chen and Chin{-}Feng Lai and Chi{-}Cheng Chang}, title = {A Hybrid Biological Data Analysis Approach for Students' Learning Creative Characteristics Recognition}, journal = {{IEEE} Access}, volume = {7}, pages = {134411--134421}, year = {2019}, url = {https://doi.org/10.1109/ACCESS.2019.2940378}, doi = {10.1109/ACCESS.2019.2940378}, timestamp = {Thu, 07 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/access/ChenLC19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/aslib/JuK19, author = {Boryung Ju and Youngseek Kim}, title = {The formation of research ethics for data sharing by biological scientists: an empirical analysis}, journal = {Aslib J. Inf. Manag.}, volume = {71}, number = {5}, pages = {583--600}, year = {2019}, url = {https://doi.org/10.1108/AJIM-12-2018-0296}, doi = {10.1108/AJIM-12-2018-0296}, timestamp = {Tue, 26 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/aslib/JuK19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/CruzAM19, author = {Ant{\'{o}}nio Cruz and Joel P. Arrais and Penousal Machado}, title = {Interactive and coordinated visualization approaches for biological data analysis}, journal = {Briefings Bioinform.}, volume = {20}, number = {4}, pages = {1513--1523}, year = {2019}, url = {https://doi.org/10.1093/bib/bby019}, doi = {10.1093/BIB/BBY019}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/CruzAM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/XieMFMZ19, author = {Juan Xie and Anjun Ma and Anne Fennell and Qin Ma and Jing Zhao}, title = {It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data}, journal = {Briefings Bioinform.}, volume = {20}, number = {4}, pages = {1449--1464}, year = {2019}, url = {https://doi.org/10.1093/bib/bby014}, doi = {10.1093/BIB/BBY014}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/XieMFMZ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/HoytDAXKSWBGGH19, author = {Charles Tapley Hoyt and Daniel Domingo{-}Fern{\'{a}}ndez and Rana Aldisi and Lingling Xu and Kristian Kolpeja and Sandra Spalek and Esther Wollert and John A. Bachman and Benjamin M. Gyori and Patrick Greene and Martin Hofmann{-}Apitius}, title = {Re-curation and rational enrichment of knowledge graphs in Biological Expression Language}, journal = {Database J. Biol. Databases Curation}, volume = {2019}, pages = {baz068}, year = {2019}, url = {https://doi.org/10.1093/database/baz068}, doi = {10.1093/DATABASE/BAZ068}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/HoytDAXKSWBGGH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/MadanSETAQRHF19, author = {Sumit Madan and Justyna Szostak and Ravikumar Komandur Elayavilli and Richard Tzong{-}Han Tsai and Mehdi Ali and Longhua Qian and Majid Rastegar{-}Mojarad and Julia Hoeng and Juliane Fluck}, title = {The extraction of complex relationships and their conversion to biological expression language {(BEL)} overview of the BioCreative {VI} {(2017)} {BEL} track}, journal = {Database J. Biol. Databases Curation}, volume = {2019}, pages = {baz084}, year = {2019}, url = {https://doi.org/10.1093/database/baz084}, doi = {10.1093/DATABASE/BAZ084}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/MadanSETAQRHF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/SpoorCSCACBRJMB19, author = {Shawna Spoor and Chun{-}Huai Cheng and Lacey{-}Anne Sanderson and Bradford Condon and Abdullah Almsaeed and Ming Chen and Anthony Bretaudeau and Helena Rasche and Sook Jung and Dorrie Main and Kirstin E. Bett and Margaret Staton and Jill L. Wegrzyn and F. Alex Feltus and Stephen P. Ficklin}, title = {Tripal v3: an ontology-based toolkit for construction of {FAIR} biological community databases}, journal = {Database J. Biol. Databases Curation}, volume = {2019}, pages = {baz077}, year = {2019}, url = {https://doi.org/10.1093/database/baz077}, doi = {10.1093/DATABASE/BAZ077}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/SpoorCSCACBRJMB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BraunSPAS19, author = {Bremen L. Braun and David A. Schott and John L. Portwood II and Carson M. Andorf and Taner Z. Sen}, title = {PedigreeNet: a web-based pedigree viewer for biological databases}, journal = {Bioinform.}, volume = {35}, number = {20}, pages = {4184--4186}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz208}, doi = {10.1093/BIOINFORMATICS/BTZ208}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BraunSPAS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangFWC19, author = {Yue Wang and Jennifer M. Franks and Michael L. Whitfield and Chao Cheng}, title = {BioMethyl: an {R} package for biological interpretation of {DNA} methylation data}, journal = {Bioinform.}, volume = {35}, number = {19}, pages = {3635--3641}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz137}, doi = {10.1093/BIOINFORMATICS/BTZ137}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangFWC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WenHTH19, author = {Zeyu Wen and Jiahua He and Huanyu Tao and Sheng{-}You Huang}, title = {PepBDB: a comprehensive structural database of biological peptide-protein interactions}, journal = {Bioinform.}, volume = {35}, number = {1}, pages = {175--177}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/bty579}, doi = {10.1093/BIOINFORMATICS/BTY579}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WenHTH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BouadjenekZV19, author = {Mohamed Reda Bouadjenek and Justin Zobel and Karin Verspoor}, title = {Automated assessment of biological database assertions using the scientific literature}, journal = {{BMC} Bioinform.}, volume = {20}, number = {1}, pages = {216:1--216:22}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-2801-x}, doi = {10.1186/S12859-019-2801-X}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BouadjenekZV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChungMSG19, author = {Neo Christopher Chung and Blazej Miasojedow and Michal Startek and Anna Gambin}, title = {Jaccard/Tanimoto similarity test and estimation methods for biological presence-absence data}, journal = {{BMC} Bioinform.}, volume = {20-S}, number = {15}, pages = {644}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-3118-5}, doi = {10.1186/S12859-019-3118-5}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ChungMSG19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DirmeierEDB19, author = {Simon Dirmeier and Mario Emmenlauer and Christoph Dehio and Niko Beerenwinkel}, title = {PyBDA: a command line tool for automated analysis of big biological data sets}, journal = {{BMC} Bioinform.}, volume = {20}, number = {1}, pages = {564:1--564:6}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-3087-8}, doi = {10.1186/S12859-019-3087-8}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DirmeierEDB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HanL19a, author = {Henry Han and Wenbin Liu}, title = {The coming era of artificial intelligence in biological data science}, journal = {{BMC} Bioinform.}, volume = {20-S}, number = {22}, pages = {712}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-3225-3}, doi = {10.1186/S12859-019-3225-3}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HanL19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KinalisNWB19, author = {Savvas Kinalis and Finn Cilius Nielsen and Ole Winther and Frederik Otzen Bagger}, title = {Deconvolution of autoencoders to learn biological regulatory modules from single cell mRNA sequencing data}, journal = {{BMC} Bioinform.}, volume = {20}, number = {1}, pages = {379:1--379:9}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-2952-9}, doi = {10.1186/S12859-019-2952-9}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KinalisNWB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LuPL19, author = {Yuping Lu and Charles A. Phillips and Michael A. Langston}, title = {A robustness metric for biological data clustering algorithms}, journal = {{BMC} Bioinform.}, volume = {20-S}, number = {15}, pages = {503}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-3089-6}, doi = {10.1186/S12859-019-3089-6}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/LuPL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Perez-GilLDMRM19, author = {Daniel Perez{-}Gil and Francisco J. Lopez and Joaqu{\'{\i}}n Dopazo and Pablo Mar{\'{\i}}n{-}Garc{\'{\i}}a and Augusto Rendon and Ignacio Medina}, title = {PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources}, journal = {{BMC} Bioinform.}, volume = {20}, number = {1}, pages = {159:1--159:5}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-2726-4}, doi = {10.1186/S12859-019-2726-4}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Perez-GilLDMRM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WangJPZW19a, author = {Yongtian Wang and Liran Juan and Jiajie Peng and Tianyi Zang and Yadong Wang}, title = {LncDisAP: a computation model for LncRNA-disease association prediction based on multiple biological datasets}, journal = {{BMC} Bioinform.}, volume = {20-S}, number = {16}, pages = {582:1--582:11}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-3081-1}, doi = {10.1186/S12859-019-3081-1}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WangJPZW19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangLB19, author = {Wenxiang Zhang and Xiujuan Lei and Chen Bian}, title = {Identifying Cancer genes by combining two-rounds {RWR} based on multiple biological data}, journal = {{BMC} Bioinform.}, volume = {20-S}, number = {18}, pages = {518:1--518:12}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-3123-8}, doi = {10.1186/S12859-019-3123-8}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangPCC19, author = {Jimmy F. Zhang and Alex R. Paciorkowski and Paul A. Craig and Feng Cui}, title = {BioVR: a platform for virtual reality assisted biological data integration and visualization}, journal = {{BMC} Bioinform.}, volume = {20}, number = {1}, pages = {78:1--78:10}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-2666-z}, doi = {10.1186/S12859-019-2666-Z}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangPCC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cluster/Bo19a, author = {Yang Bo}, title = {The data clustering based dynamic risk identification of biological immune system: mechanism, method and simulation}, journal = {Clust. Comput.}, volume = {22}, number = {Supplement}, pages = {6253--6266}, year = {2019}, url = {https://doi.org/10.1007/s10586-018-1960-2}, doi = {10.1007/S10586-018-1960-2}, timestamp = {Tue, 29 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cluster/Bo19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cogsr/OgielaO19, author = {Lidia Ogiela and Urszula Ogiela}, title = {Cognitive and biologically cryptographic protocols for data security}, journal = {Cogn. Syst. Res.}, volume = {56}, pages = {1--6}, year = {2019}, url = {https://doi.org/10.1016/j.cogsys.2019.02.008}, doi = {10.1016/J.COGSYS.2019.02.008}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cogsr/OgielaO19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dim/XuGJTLR19, author = {Weijia Xu and Amit Gupta and Pankaj Jaiswal and Crispin Taylor and Patti Lockhart and Jennifer Regala}, title = {Improving Publication Pipeline with Automated Biological Entity Detection and Validation Service}, journal = {Data Inf. Manag.}, volume = {3}, number = {1}, pages = {3--17}, year = {2019}, url = {https://doi.org/10.2478/dim-2019-0003}, doi = {10.2478/DIM-2019-0003}, timestamp = {Wed, 05 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/dim/XuGJTLR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijcini/Hiraishi19, author = {Hironori Hiraishi}, title = {Qualitative and Cognitive Analysis and Modeling Tool for Biological Data}, journal = {Int. J. Cogn. Informatics Nat. Intell.}, volume = {13}, number = {2}, pages = {30--47}, year = {2019}, url = {https://doi.org/10.4018/IJCINI.2019040103}, doi = {10.4018/IJCINI.2019040103}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijcini/Hiraishi19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijmdem/HosseinkhaniJ19, author = {Jila Hosseinkhani and Chris Joslin}, title = {A Biologically Inspired Saliency Priority Extraction Using Bayesian Framework}, journal = {Int. J. Multim. Data Eng. Manag.}, volume = {10}, number = {2}, pages = {1--20}, year = {2019}, url = {https://doi.org/10.4018/IJMDEM.2019040101}, doi = {10.4018/IJMDEM.2019040101}, timestamp = {Sat, 08 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijmdem/HosseinkhaniJ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijon/WuL19, author = {Fang{-}Xiang Wu and Min Li}, title = {Deep learning for biological/clinical data}, journal = {Neurocomputing}, volume = {324}, pages = {1--2}, year = {2019}, url = {https://doi.org/10.1016/j.neucom.2018.05.047}, doi = {10.1016/J.NEUCOM.2018.05.047}, timestamp = {Fri, 12 Apr 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijon/WuL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/TarasovaBFPN19, author = {Olga A. Tarasova and Nadezhda Yu. Biziukova and Dmitry Filimonov and Vladimir Poroikov and Marc C. Nicklaus}, title = {Data Mining Approach for Extraction of Useful Information About Biologically Active Compounds from Publications}, journal = {J. Chem. Inf. Model.}, volume = {59}, number = {9}, pages = {3635--3644}, year = {2019}, url = {https://doi.org/10.1021/acs.jcim.9b00164}, doi = {10.1021/ACS.JCIM.9B00164}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/TarasovaBFPN19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/PerscheidGU19, author = {Cindy Perscheid and Bastien Grasnick and Matthias Uflacker}, title = {Integrative Gene Selection on Gene Expression Data: Providing Biological Context to Traditional Approaches}, journal = {J. Integr. Bioinform.}, volume = {16}, number = {1}, year = {2019}, url = {https://doi.org/10.1515/jib-2018-0064}, doi = {10.1515/JIB-2018-0064}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/PerscheidGU19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jsjkx/LiuWGYL19, author = {Yuan Liu and Xin Wang and Ying Gan and Chaozhou Yang and Weixi Li}, title = {BioPW+: {\unicode{22522}}{\unicode{20110}}Linked Data{\unicode{30340}}{\unicode{29983}}{\unicode{29289}}{\unicode{36884}}{\unicode{24452}}{\unicode{25968}}{\unicode{25454}}{\unicode{21487}}{\unicode{35270}}{\unicode{21270}}{\unicode{31995}}{\unicode{32479}} (BioPW+: Biological Pathway Data Visualization System Based on Linked Data)}, journal = {{\unicode{35745}}{\unicode{31639}}{\unicode{26426}}{\unicode{31185}}{\unicode{23398}}}, volume = {46}, number = {2}, pages = {18--23}, year = {2019}, url = {https://doi.org/10.11896/j.issn.1002-137X.2019.02.003}, doi = {10.11896/J.ISSN.1002-137X.2019.02.003}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jsjkx/LiuWGYL19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BurleyBBBCCCDDD19, author = {Stephen K. Burley and Helen M. Berman and Charmi Bhikadiya and Chunxiao Bi and Li Chen and Luigi Di Costanzo and Cole H. Christie and Kenneth Dalenberg and Jose M. Duarte and Shuchismita Dutta and Zukang Feng and Sutapa Ghosh and David S. Goodsell and Rachel Kramer Green and Vladimir Guranovic and Dmytro Guzenko and Brian P. Hudson and Tara Kalro and Yuhe Liang and Robert Lowe and Harry Namkoong and Ezra Peisach and Irina Periskova and Andreas Prlic and Christopher Randle and Alexander S. Rose and Peter W. Rose and Raul Sala and Monica Sekharan and Chenghua Shao and Lihua Tan and Yi{-}Ping Tao and Yana Valasatava and Maria Voigt and John D. Westbrook and Jesse Woo and Huanwang Yang and Jasmine Young and Marina Zhuravleva and Christine Zardecki}, title = {{RCSB} Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy}, journal = {Nucleic Acids Res.}, volume = {47}, number = {Database-Issue}, pages = {D464--D474}, year = {2019}, url = {https://doi.org/10.1093/nar/gky1004}, doi = {10.1093/NAR/GKY1004}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BurleyBBBCCCDDD19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/paa/HoseiniM19, author = {Elham Hoseini and Eghbal G. Mansoori}, title = {Unsupervised feature selection in linked biological data}, journal = {Pattern Anal. Appl.}, volume = {22}, number = {3}, pages = {999--1013}, year = {2019}, url = {https://doi.org/10.1007/s10044-018-0707-2}, doi = {10.1007/S10044-018-0707-2}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/paa/HoseiniM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tbe/YangHCC19, author = {Xi Yang and Guoqiang Han and Jiazhou Chen and Hongmin Cai}, title = {Finding Correlated Patterns via High-Order Matching for Multiple Sourced Biological Data}, journal = {{IEEE} Trans. Biomed. Eng.}, volume = {66}, number = {4}, pages = {1017--1025}, year = {2019}, url = {https://doi.org/10.1109/TBME.2018.2866266}, doi = {10.1109/TBME.2018.2866266}, timestamp = {Fri, 04 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tbe/YangHCC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/CaiMR19, author = {Xingyu Cai and Abdullah{-}Al Mamun and Sanguthevar Rajasekaran}, title = {Efficient Algorithms for Finding the Closest {\textdollar}l{\textdollar}l-Mers in Biological Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {16}, number = {6}, pages = {1912--1921}, year = {2019}, url = {https://doi.org/10.1109/TCBB.2018.2843364}, doi = {10.1109/TCBB.2018.2843364}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/CaiMR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tnn/Feng0LGZ19, author = {Chun{-}Mei Feng and Yong Xu and Jin{-}Xing Liu and Ying{-}Lian Gao and Chun{-}Hou Zheng}, title = {Supervised Discriminative Sparse {PCA} for Com-Characteristic Gene Selection and Tumor Classification on Multiview Biological Data}, journal = {{IEEE} Trans. Neural Networks Learn. Syst.}, volume = {30}, number = {10}, pages = {2926--2937}, year = {2019}, url = {https://doi.org/10.1109/TNNLS.2019.2893190}, doi = {10.1109/TNNLS.2019.2893190}, timestamp = {Sat, 13 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tnn/Feng0LGZ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/IEEEpact/KaplanYG19, author = {Roman Kaplan and Leonid Yavits and Ran Ginosar}, title = {{POSTER:} BioSEAL: In-Memory Biological Sequence Alignment Accelerator for Large-Scale Genomic Data}, booktitle = {28th International Conference on Parallel Architectures and Compilation Techniques, {PACT} 2019, Seattle, WA, USA, September 23-26, 2019}, pages = {459--460}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/PACT.2019.00044}, doi = {10.1109/PACT.2019.00044}, timestamp = {Wed, 13 Nov 2019 18:02:12 +0100}, biburl = {https://dblp.org/rec/conf/IEEEpact/KaplanYG19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/acsw/ZarnegarJVS19, author = {Armita Zarnegar and Herbert F. Jelinek and Peter Vamplew and Andrew Stranieri}, title = {Integrating Biological Heuristics and Gene Expression Data for Gene Regulatory Network Inference}, booktitle = {Proceedings of the Australasian Computer Science Week Multiconference, {ACSW} 2019, Sydney, NSW, Australia, January 29-31, 2019}, pages = {37:1--37:10}, publisher = {{ACM}}, year = {2019}, url = {https://doi.org/10.1145/3290688.3290741}, doi = {10.1145/3290688.3290741}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/acsw/ZarnegarJVS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/Tillquist19, author = {Richard C. Tillquist}, editor = {Xinghua Mindy Shi and Michael Buck and Jian Ma and Pierangelo Veltri}, title = {Low-Dimensional Representation of Biological Sequence Data}, booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics, Computational Biology and Health Informatics, {BCB} 2019, Niagara Falls, NY, USA, September 7-10, 2019}, pages = {555}, publisher = {{ACM}}, year = {2019}, url = {https://doi.org/10.1145/3307339.3343174}, doi = {10.1145/3307339.3343174}, timestamp = {Wed, 18 Sep 2019 17:06:08 +0200}, biburl = {https://dblp.org/rec/conf/bcb/Tillquist19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdataconf/IshaqSD19, author = {Najib Ishaq and George Student and Noah M. Daniels}, editor = {Chaitanya K. Baru and Jun Huan and Latifur Khan and Xiaohua Hu and Ronay Ak and Yuanyuan Tian and Roger S. Barga and Carlo Zaniolo and Kisung Lee and Yanfang (Fanny) Ye}, title = {Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data}, booktitle = {2019 {IEEE} International Conference on Big Data {(IEEE} BigData), Los Angeles, CA, USA, December 9-12, 2019}, pages = {780--789}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/BigData47090.2019.9005688}, doi = {10.1109/BIGDATA47090.2019.9005688}, timestamp = {Tue, 18 Oct 2022 14:44:48 +0200}, biburl = {https://dblp.org/rec/conf/bigdataconf/IshaqSD19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdataconf/IshaqSD19a, author = {Najib Ishaq and George Student and Noah M. Daniels}, editor = {Chaitanya K. Baru and Jun Huan and Latifur Khan and Xiaohua Hu and Ronay Ak and Yuanyuan Tian and Roger S. Barga and Carlo Zaniolo and Kisung Lee and Yanfang (Fanny) Ye}, title = {Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data}, booktitle = {2019 {IEEE} International Conference on Big Data {(IEEE} BigData), Los Angeles, CA, USA, December 9-12, 2019}, pages = {6077}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/BigData47090.2019.9006413}, doi = {10.1109/BIGDATA47090.2019.9006413}, timestamp = {Wed, 31 Mar 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bigdataconf/IshaqSD19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/carla/Alfaro-BadillaA19, author = {Kaleb Alfaro{-}Badilla and Andr{\'{e}}s Arroyo{-}Romero and Carlos Salazar{-}Garc{\'{\i}}a and Luis G. Le{\'{o}}n{-}Vega and Javier Espinoza{-}Gonz{\'{a}}lez and Franklin Hern{\'{a}}ndez{-}Castro and Alfonso Chac{\'{o}}n{-}Rodr{\'{\i}}guez and Georgios Smaragdos and Christos Strydis}, editor = {Juan Luis Crespo{-}Mari{\~{n}}o and Esteban Meneses{-}Rojas}, title = {Improving the Simulation of Biologically Accurate Neural Networks Using Data Flow {HLS} Transformations on Heterogeneous SoC-FPGA Platforms}, booktitle = {High Performance Computing - 6th Latin American Conference, {CARLA} 2019, Turrialba, Costa Rica, September 25-27, 2019, Revised Selected Papers}, series = {Communications in Computer and Information Science}, volume = {1087}, pages = {185--199}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-41005-6\_13}, doi = {10.1007/978-3-030-41005-6\_13}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/carla/Alfaro-BadillaA19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibcb/GentiliMPFB19, author = {Michele Gentili and Leonardo Martini and Manuela Petti and Lorenzo Farina and Luca Becchetti}, editor = {Giacomo Baruzzo and Sebastian Daberdaku and Barbara Di Camillo and Simone Furini and Emanuele Domenico Giordano and Giuseppe Nicosia}, title = {Biological Random Walks: Integrating heterogeneous data in disease gene prioritization}, booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics and Computational Biology, {CIBCB} 2019, Siena, Italy, July 9-11, 2019}, pages = {1--8}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/CIBCB.2019.8791472}, doi = {10.1109/CIBCB.2019.8791472}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cibcb/GentiliMPFB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eScience/AndrieuBBCDPV19, author = {Pierre Andrieu and Bryan Brancotte and Laurent Bulteau and Sarah Cohen{-}Boulakia and Alain Denise and Adeline Pierrot and St{\'{e}}phane Vialette}, title = {Reliability-Aware and Graph-Based Approach for Rank Aggregation of Biological Data}, booktitle = {15th International Conference on eScience, eScience 2019, San Diego, CA, USA, September 24-27, 2019}, pages = {136--145}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/eScience.2019.00022}, doi = {10.1109/ESCIENCE.2019.00022}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eScience/AndrieuBBCDPV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hucc/YangMLZX19, author = {Minglang Yang and Yi Man and Ningning Liu and Yixin Zhang and Xiao Xing}, editor = {Danijela Milosevic and Yong Tang and Qiaohong Zu}, title = {Design of Searchable Algorithm for Biological Databased on Homomorphic Encryption}, booktitle = {Human Centered Computing - 5th International Conference, {HCC} 2019, {\v{C}}a{\v{c}}ak, Serbia, August 5-7, 2019, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {11956}, pages = {537--545}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-37429-7\_54}, doi = {10.1007/978-3-030-37429-7\_54}, timestamp = {Tue, 21 Jan 2020 20:32:10 +0100}, biburl = {https://dblp.org/rec/conf/hucc/YangMLZX19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hucc/ZhangMHGX19, author = {Changwen Zhang and Yi Man and Jin He and Jieming Gu and Xiao Xing}, editor = {Danijela Milosevic and Yong Tang and Qiaohong Zu}, title = {Biological Data Migration Method Based on {IPFS} System}, booktitle = {Human Centered Computing - 5th International Conference, {HCC} 2019, {\v{C}}a{\v{c}}ak, Serbia, August 5-7, 2019, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {11956}, pages = {588--599}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-37429-7\_60}, doi = {10.1007/978-3-030-37429-7\_60}, timestamp = {Tue, 21 Jan 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/hucc/ZhangMHGX19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icann/SchneiderWM19, author = {Michael Schneider and Lichao Wang and Carsten Marr}, editor = {Igor V. Tetko and Vera Kurkov{\'{a}} and Pavel Karpov and Fabian J. Theis}, title = {Evaluation of Domain Adaptation Approaches for Robust Classification of Heterogeneous Biological Data Sets}, booktitle = {Artificial Neural Networks and Machine Learning - {ICANN} 2019: Deep Learning - 28th International Conference on Artificial Neural Networks, Munich, Germany, September 17-19, 2019, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {11728}, pages = {673--686}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-30484-3\_53}, doi = {10.1007/978-3-030-30484-3\_53}, timestamp = {Sat, 19 Oct 2019 20:11:52 +0200}, biburl = {https://dblp.org/rec/conf/icann/SchneiderWM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/ThapaA19, author = {Ishwor Thapa and Hesham Ali}, editor = {Ion I. Mandoiu and T. M. Murali and Giri Narasimhan and Sanguthevar Rajasekaran and Pavel Skums and Alexander Zelikovsky}, title = {A New Graph Database System for Multi-omics Data Integration and Mining Complex Biological Information}, booktitle = {Computational Advances in Bio and Medical Sciences - 9th International Conference, {ICCABS} 2019, Miami, FL, USA, November 15-17, 2019, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {12029}, pages = {171--183}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-46165-2\_14}, doi = {10.1007/978-3-030-46165-2\_14}, timestamp = {Wed, 04 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/ThapaA19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iceis/SchmidtsKSZ19, author = {Oliver Schmidts and Bodo Kraft and Ines Siebigteroth and Albert Z{\"{u}}ndorf}, editor = {Joaquim Filipe and Michal Smialek and Alexander Brodsky and Slimane Hammoudi}, title = {Schema Matching with Frequent Changes on Semi-Structured Input Files: {A} Machine Learning Approach on Biological Product Data}, booktitle = {Proceedings of the 21st International Conference on Enterprise Information Systems, {ICEIS} 2019, Heraklion, Crete, Greece, May 3-5, 2019, Volume 1}, pages = {208--215}, publisher = {SciTePress}, year = {2019}, url = {https://doi.org/10.5220/0007723602080215}, doi = {10.5220/0007723602080215}, timestamp = {Tue, 06 Jun 2023 14:58:01 +0200}, biburl = {https://dblp.org/rec/conf/iceis/SchmidtsKSZ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ichi/GuzziTV19, author = {Pietro Hiram Guzzi and Giuseppe Tradigo and Pierangelo Veltri}, title = {Using Dual Networks for the Integration of Clinical and Biological Data}, booktitle = {2019 {IEEE} International Conference on Healthcare Informatics, {ICHI} 2019, Xi'an, China, June 10-13, 2019}, pages = {1--2}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/ICHI.2019.8904685}, doi = {10.1109/ICHI.2019.8904685}, timestamp = {Wed, 27 Nov 2019 14:42:06 +0100}, biburl = {https://dblp.org/rec/conf/ichi/GuzziTV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iclr/XiaoCLP19, author = {Will Xiao and Honglin Chen and Qianli Liao and Tomaso A. Poggio}, title = {Biologically-Plausible Learning Algorithms Can Scale to Large Datasets}, booktitle = {7th International Conference on Learning Representations, {ICLR} 2019, New Orleans, LA, USA, May 6-9, 2019}, publisher = {OpenReview.net}, year = {2019}, url = {https://openreview.net/forum?id=SygvZ209F7}, timestamp = {Thu, 25 Jul 2019 13:03:15 +0200}, biburl = {https://dblp.org/rec/conf/iclr/XiaoCLP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icnc/UedaSTN19, author = {Takaya Ueda and Masataka Seo and Yukako Tohsato and Ikuko Nishikawa}, editor = {Yong Liu and Lipo Wang and Liang Zhao and Zhengtao Yu}, title = {Analysis of Time Series Anomalies Using Causal InfoGAN and Its Application to Biological Data}, booktitle = {Advances in Natural Computation, Fuzzy Systems and Knowledge Discovery - Proceedings of the 15th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery {(ICNC-FSKD} 2019), Kunming, China, July 20-22, 2019 - Volume 1}, series = {Advances in Intelligent Systems and Computing}, volume = {1074}, pages = {609--617}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-32456-8\_67}, doi = {10.1007/978-3-030-32456-8\_67}, timestamp = {Thu, 23 Jan 2020 15:53:37 +0100}, biburl = {https://dblp.org/rec/conf/icnc/UedaSTN19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iconference/Kim19, author = {Youngseek Kim}, editor = {Natalie Greene Taylor and Caitlin Christian{-}Lamb and Michelle H. Martin and Bonnie A. Nardi}, title = {A Comparative Study of Biological Scientists' Data Sharing Between Genome Sequence Data and Lab Experiment Data}, booktitle = {Information in Contemporary Society - 14th International Conference, iConference 2019, Washington, DC, USA, March 31 - April 3, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11420}, pages = {3--14}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-15742-5\_1}, doi = {10.1007/978-3-030-15742-5\_1}, timestamp = {Sun, 25 Oct 2020 22:57:17 +0100}, biburl = {https://dblp.org/rec/conf/iconference/Kim19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ijcnn/AlberganteBZ19, author = {Luca Albergante and Jonathan Bac and Andrei Yu. Zinovyev}, title = {Estimating the effective dimension of large biological datasets using Fisher separability analysis}, booktitle = {International Joint Conference on Neural Networks, {IJCNN} 2019 Budapest, Hungary, July 14-19, 2019}, pages = {1--8}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/IJCNN.2019.8852450}, doi = {10.1109/IJCNN.2019.8852450}, timestamp = {Tue, 10 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ijcnn/AlberganteBZ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/MedelaPSBCCBG19, author = {Alfonso Medela and Artzai Pic{\'{o}}n and Cristina L{\'{o}}pez Saratxaga and Oihana Belar and Virginia Cabez{\'{o}}n and Riccardo Cicchi and Roberto Bilbao and Ben Glover}, title = {Few Shot Learning in Histopathological Images: Reducing the Need of Labeled Data on Biological Datasets}, booktitle = {16th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2019, Venice, Italy, April 8-11, 2019}, pages = {1860--1864}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/ISBI.2019.8759182}, doi = {10.1109/ISBI.2019.8759182}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/MedelaPSBCCBG19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/kdd/YangSLPB19, author = {Laurence Yang and Michael A. Saunders and Jean{-}Christophe Lachance and Bernhard O. Palsson and Jos{\'{e}} Bento}, editor = {Ankur Teredesai and Vipin Kumar and Ying Li and R{\'{o}}mer Rosales and Evimaria Terzi and George Karypis}, title = {Estimating Cellular Goals from High-Dimensional Biological Data}, booktitle = {Proceedings of the 25th {ACM} {SIGKDD} International Conference on Knowledge Discovery {\&} Data Mining, {KDD} 2019, Anchorage, AK, USA, August 4-8, 2019}, pages = {2202--2211}, publisher = {{ACM}}, year = {2019}, url = {https://doi.org/10.1145/3292500.3330775}, doi = {10.1145/3292500.3330775}, timestamp = {Fri, 05 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/kdd/YangSLPB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mmsp/BairdABSS19, author = {Alice Baird and Shahin Amiriparian and Miriam Berschneider and Maximilian Schmitt and Bj{\"{o}}rn W. Schuller}, title = {Predicting Biological Signals from Speech: Introducing a Novel Multimodal Dataset and Results}, booktitle = {21st {IEEE} International Workshop on Multimedia Signal Processing, {MMSP} 2019, Kuala Lumpur, Malaysia, September 27-29, 2019}, pages = {1--5}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/MMSP.2019.8901758}, doi = {10.1109/MMSP.2019.8901758}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/mmsp/BairdABSS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pkdd/SchallnerRSS19, author = {Ludwig Schallner and Johannes Rabold and Oliver Scholz and Ute Schmid}, editor = {Peggy Cellier and Kurt Driessens}, title = {Effect of Superpixel Aggregation on Explanations in {LIME} - {A} Case Study with Biological Data}, booktitle = {Machine Learning and Knowledge Discovery in Databases - International Workshops of {ECML} {PKDD} 2019, W{\"{u}}rzburg, Germany, September 16-20, 2019, Proceedings, Part {I}}, series = {Communications in Computer and Information Science}, volume = {1167}, pages = {147--158}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-43823-4\_13}, doi = {10.1007/978-3-030-43823-4\_13}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/pkdd/SchallnerRSS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/ThompsonCRH19, author = {Mike Thompson and Zeyuan Johnson Chen and Elior Rahmani and Eran Halperin}, editor = {Lenore J. Cowen}, title = {Distinguishing Biological from Technical Sources of Variation Using a Combination of Methylation Datasets}, booktitle = {Research in Computational Molecular Biology - 23rd Annual International Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11467}, pages = {316--317}, publisher = {Springer}, year = {2019}, url = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/recomb/ThompsonCRH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sac/BouaskerYD19, author = {Souad Bouasker and Sadok Ben Yahia and Gayo Diallo}, editor = {Chih{-}Cheng Hung and George A. Papadopoulos}, title = {An insight into biological datamining based on rarity and correlation as constraints}, booktitle = {Proceedings of the 34th {ACM/SIGAPP} Symposium on Applied Computing, {SAC} 2019, Limassol, Cyprus, April 8-12, 2019}, pages = {3--10}, publisher = {{ACM}}, year = {2019}, url = {https://doi.org/10.1145/3297280.3297281}, doi = {10.1145/3297280.3297281}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/sac/BouaskerYD19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ssci/NakariMKST19, author = {Iko Nakari and Akinori Murata and Eiki Kitajima and Hiroyuki Sato and Keiki Takadama}, title = {Sleep Apnea Syndrome Detection based on Biological Vibration Data from Mattress Sensor}, booktitle = {{IEEE} Symposium Series on Computational Intelligence, {SSCI} 2019, Xiamen, China, December 6-9, 2019}, pages = {550--556}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/SSCI44817.2019.9003156}, doi = {10.1109/SSCI44817.2019.9003156}, timestamp = {Wed, 26 Feb 2020 16:57:41 +0100}, biburl = {https://dblp.org/rec/conf/ssci/NakariMKST19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/Agapito19, author = {Giuseppe Agapito}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Standards and Models for Biological Data: {SBML}}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {142--146}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20417-2}, doi = {10.1016/B978-0-12-809633-8.20417-2}, timestamp = {Thu, 05 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/Agapito19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/Agapito19a, author = {Giuseppe Agapito}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Standards and Models for Biological Data: BioPAX}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {147--153}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20492-5}, doi = {10.1016/B978-0-12-809633-8.20492-5}, timestamp = {Thu, 05 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/Agapito19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/Calabrese19, author = {Barbara Calabrese}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Experimental Platforms for Extracting Biological Data: Mass Spectrometry, Microarray, Next Generation Sequencing}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {126--129}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20412-3}, doi = {10.1016/B978-0-12-809633-8.20412-3}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/reference/bioinf/Calabrese19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/Calabrese19a, author = {Barbara Calabrese}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Standards and Models for Biological Data: Common Formats}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {130--136}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20418-4}, doi = {10.1016/B978-0-12-809633-8.20418-4}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/reference/bioinf/Calabrese19a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/Calabrese19b, author = {Barbara Calabrese}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Standards and Models for Biological Data: {FGED} and {HUPO}}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {137--141}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20416-0}, doi = {10.1016/B978-0-12-809633-8.20416-0}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/reference/bioinf/Calabrese19b.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/Dhillon19, author = {Sarinder Kaur Dhillon}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Biological Databases}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 2}, pages = {96--117}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20198-2}, doi = {10.1016/B978-0-12-809633-8.20198-2}, timestamp = {Thu, 05 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/Dhillon19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/Muhammad19, author = {Nor Azlan Nor Muhammad}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Biological Database Searching}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 3}, pages = {29--38}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20072-1}, doi = {10.1016/B978-0-12-809633-8.20072-1}, timestamp = {Sat, 07 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/Muhammad19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/RahmatiPRJ19, author = {Sara Rahmati and Chiara Pastrello and Andrea E. M. Rossos and Igor Jurisica}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Two Decades of Biological Pathway Databases: Results and Challenges}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {1071--1084}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20496-2}, doi = {10.1016/B978-0-12-809633-8.20496-2}, timestamp = {Thu, 05 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/RahmatiPRJ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/VenkataG19, author = {Ramakanth Chirravuri Venkata and Dario Ghersi}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Biological Pathway Data Formats and Standards}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 1}, pages = {1063--1066}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20432-9}, doi = {10.1016/B978-0-12-809633-8.20432-9}, timestamp = {Tue, 23 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/VenkataG19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1901-05959, author = {Roman Kaplan and Leonid Yavits and Ran Ginosar}, title = {BioSEAL: In-Memory Biological Sequence Alignment Accelerator for Large-Scale Genomic Data}, journal = {CoRR}, volume = {abs/1901.05959}, year = {2019}, url = {http://arxiv.org/abs/1901.05959}, eprinttype = {arXiv}, eprint = {1901.05959}, timestamp = {Fri, 01 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1901-05959.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1901-06328, author = {Luca Albergante and Jonathan Bac and Andrei Yu. Zinovyev}, title = {Estimating the effective dimension of large biological datasets using Fisher separability analysis}, journal = {CoRR}, volume = {abs/1901.06328}, year = {2019}, url = {http://arxiv.org/abs/1901.06328}, eprinttype = {arXiv}, eprint = {1901.06328}, timestamp = {Tue, 10 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1901-06328.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1905-11837, author = {Chun{-}Mei Feng and Yong Xu and Jin{-}Xing Liu and Ying{-}Lian Gao and Chun{-}Hou Zheng}, title = {Supervised Discriminative Sparse {PCA} for Com-Characteristic Gene Selection and Tumor Classification on Multiview Biological Data}, journal = {CoRR}, volume = {abs/1905.11837}, year = {2019}, url = {http://arxiv.org/abs/1905.11837}, eprinttype = {arXiv}, eprint = {1905.11837}, timestamp = {Sat, 13 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1905-11837.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1906-07289, author = {Nhat Tran and Ishfaq Ahmad and Jean Gao}, title = {rna2rna: Predicting lncRNA-microRNA-mRNA Interactions from Sequence with Integration of Interactome and Biological Annotation Data}, journal = {CoRR}, volume = {abs/1906.07289}, year = {2019}, url = {http://arxiv.org/abs/1906.07289}, eprinttype = {arXiv}, eprint = {1906.07289}, timestamp = {Mon, 24 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1906-07289.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1908-08551, author = {Najib Ishaq and George Student and Noah M. Daniels}, title = {Clustered Hierarchical Entropy-Scaling Search of Astronomical and Biological Data}, journal = {CoRR}, volume = {abs/1908.08551}, year = {2019}, url = {http://arxiv.org/abs/1908.08551}, eprinttype = {arXiv}, eprint = {1908.08551}, timestamp = {Mon, 26 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1908-08551.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1910-07856, author = {Ludwig Schallner and Johannes Rabold and Oliver Scholz and Ute Schmid}, title = {Effect of Superpixel Aggregation on Explanations in {LIME} - {A} Case Study with Biological Data}, journal = {CoRR}, volume = {abs/1910.07856}, year = {2019}, url = {http://arxiv.org/abs/1910.07856}, eprinttype = {arXiv}, eprint = {1910.07856}, timestamp = {Tue, 22 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1910-07856.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1911-04389, author = {Niklas T. Rindtorff and Mingyu Lu and Nisarg A. Patel and Huahua Zheng and Alexander D'Amour}, title = {A Biologically Plausible Benchmark for Contextual Bandit Algorithms in Precision Oncology Using in vitro Data}, journal = {CoRR}, volume = {abs/1911.04389}, year = {2019}, url = {http://arxiv.org/abs/1911.04389}, eprinttype = {arXiv}, eprint = {1911.04389}, timestamp = {Sun, 01 Dec 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1911-04389.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1911-10617, author = {Claas Flint and Katharina F{\"{o}}rster and Sophie A. Koser and Carsten Konrad and Pienie Zwitserlood and Klaus Berger and Marco Hermesdorf and Tilo Kircher and Igor Nenadic and Axel Krug and Bernhard T. Baune and Katharina Dohm and Ronny Redlich and Nils Opel and Tim Hahn and Xiaoyi Jiang and Udo Dannlowski and Dominik Grotegerd}, title = {Biological sex classification with structural {MRI} data shows increased misclassification in transgender women}, journal = {CoRR}, volume = {abs/1911.10617}, year = {2019}, url = {http://arxiv.org/abs/1911.10617}, eprinttype = {arXiv}, eprint = {1911.10617}, timestamp = {Sat, 23 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1911-10617.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Tini18, author = {Giulia Tini}, title = {The influence of the inclusion of biological knowledge in statistical methods to integrate multi-omics data}, school = {University of Trento, Italy}, year = {2018}, url = {http://eprints-phd.biblio.unitn.it/2981/}, timestamp = {Thu, 25 Jul 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Tini18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Zhong18, author = {Yi Zhong}, title = {Feature selection and classification for high-dimensional biological data under cross-validation framework}, school = {University of Kansas, {USA}}, year = {2018}, url = {https://hdl.handle.net/1808/27072}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Zhong18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ac/Gharajeh18, author = {Mohammad Samadi Gharajeh}, title = {Chapter Eight - Biological Big Data Analytics}, journal = {Adv. Comput.}, volume = {109}, pages = {321--355}, year = {2018}, url = {https://doi.org/10.1016/bs.adcom.2017.08.002}, doi = {10.1016/BS.ADCOM.2017.08.002}, timestamp = {Wed, 20 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ac/Gharajeh18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/access/KimYKSS18, author = {Seongjung Kim and Seongkyu Yeom and Oh{-}Jin Kwon and Dongil Shin and Dongkyoo Shin}, title = {Ubiquitous Healthcare System for Analysis of Chronic Patients' Biological and Lifelog Data}, journal = {{IEEE} Access}, volume = {6}, pages = {8909--8915}, year = {2018}, url = {https://doi.org/10.1109/ACCESS.2018.2805304}, doi = {10.1109/ACCESS.2018.2805304}, timestamp = {Wed, 04 Jul 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/access/KimYKSS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/LiWN18, author = {Yifeng Li and Fang{-}Xiang Wu and Alioune Ngom}, title = {A review on machine learning principles for multi-view biological data integration}, journal = {Briefings Bioinform.}, volume = {19}, number = {2}, pages = {325--340}, year = {2018}, url = {https://doi.org/10.1093/bib/bbw113}, doi = {10.1093/BIB/BBW113}, timestamp = {Mon, 28 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/LiWN18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/BouzagloCT18, author = {David Bouzaglo and Israel Chasida and Elishai Ezra Tsur}, title = {Distributed retrieval engine for the development of cloud-deployed biological databases}, journal = {BioData Min.}, volume = {11}, number = {1}, pages = {26:1--26:10}, year = {2018}, url = {https://doi.org/10.1186/s13040-018-0185-5}, doi = {10.1186/S13040-018-0185-5}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/BouzagloCT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/HoytDH18, author = {Charles Tapley Hoyt and Daniel Domingo{-}Fern{\'{a}}ndez and Martin Hofmann{-}Apitius}, title = {{BEL} Commons: an environment for exploration and analysis of networks encoded in Biological Expression Language}, journal = {Database J. Biol. Databases Curation}, volume = {2018}, pages = {bay126}, year = {2018}, url = {https://doi.org/10.1093/database/bay126}, doi = {10.1093/DATABASE/BAY126}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/HoytDH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/JorqueraGCPH18, author = {Roddy Jorquera and Carolina Gonz{\'{a}}lez and Philip T. L. C. Clausen and Bent Petersen and David S. Holmes}, title = {Improved ontology for eukaryotic single-exon coding sequences in biological databases}, journal = {Database J. Biol. Databases Curation}, volume = {2018}, pages = {bay089}, year = {2018}, url = {https://doi.org/10.1093/database/bay089}, doi = {10.1093/DATABASE/BAY089}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/JorqueraGCPH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GorenLWW18, author = {Emily Goren and Peng Liu and Chao Wang and Chong Wang}, title = {BinQuasi: a peak detection method for ChIP-sequencing data with biological replicates}, journal = {Bioinform.}, volume = {34}, number = {17}, pages = {2909--2917}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/bty227}, doi = {10.1093/BIOINFORMATICS/BTY227}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GorenLWW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RuszczyckiB18, author = {Blazej Ruszczycki and Tytus Bernas}, title = {Quality of biological images, reconstructed using localization microscopy data}, journal = {Bioinform.}, volume = {34}, number = {5}, pages = {845--852}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/btx597}, doi = {10.1093/BIOINFORMATICS/BTX597}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RuszczyckiB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WuTHHLTC18, author = {Han{-}Ming Wu and Yin{-}Jing Tien and Meng{-}Ru Ho and Hai{-}Gwo Hwu and Wen{-}Chang Lin and Mi{-}Hua Tao and Chun{-}Houh Chen}, title = {Covariate-adjusted heatmaps for visualizing biological data via correlation decomposition}, journal = {Bioinform.}, volume = {34}, number = {20}, pages = {3529--3538}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/bty335}, doi = {10.1093/BIOINFORMATICS/BTY335}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WuTHHLTC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YiRZAL18, author = {Haidong Yi and Ayush T. Raman and Han Zhang and Genevera I. Allen and Zhandong Liu}, title = {Detecting hidden batch factors through data-adaptive adjustment for biological effects}, journal = {Bioinform.}, volume = {34}, number = {7}, pages = {1141--1147}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/btx635}, doi = {10.1093/BIOINFORMATICS/BTX635}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YiRZAL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biosystems/BarbosaNWMT18, author = {Sara Barbosa and Bastian Niebel and Sebastian Wolf and Klaus Mauch and Ralf Takors}, title = {A guide to gene regulatory network inference for obtaining predictive solutions: Underlying assumptions and fundamental biological and data constraints}, journal = {Biosyst.}, volume = {174}, pages = {37--48}, year = {2018}, url = {https://doi.org/10.1016/j.biosystems.2018.10.008}, doi = {10.1016/J.BIOSYSTEMS.2018.10.008}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biosystems/BarbosaNWMT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biosystems/Slijepcevic18, author = {Predrag Slijepcevic}, title = {Evolutionary epistemology: Reviewing and reviving with new data the research programme for distributed biological intelligence}, journal = {Biosyst.}, volume = {163}, pages = {23--35}, year = {2018}, url = {https://doi.org/10.1016/j.biosystems.2017.11.008}, doi = {10.1016/J.BIOSYSTEMS.2017.11.008}, timestamp = {Thu, 20 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biosystems/Slijepcevic18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/IuchiST18, author = {Hitoshi Iuchi and Masahiro Sugimoto and Masaru Tomita}, title = {{MICOP:} Maximal information coefficient-based oscillation prediction to detect biological rhythms in proteomics data}, journal = {{BMC} Bioinform.}, volume = {19}, number = {1}, pages = {249:1--249:11}, year = {2018}, url = {https://doi.org/10.1186/s12859-018-2257-4}, doi = {10.1186/S12859-018-2257-4}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/IuchiST18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiuCHS18, author = {Fei Liu and Siyuan Chen and Monika Heiner and Hengjie Song}, title = {Modeling biological systems with uncertain kinetic data using fuzzy continuous Petri nets}, journal = {{BMC} Syst. Biol.}, volume = {12}, number = {4}, pages = {63--74}, year = {2018}, url = {https://doi.org/10.1186/s12918-018-0568-8}, doi = {10.1186/S12918-018-0568-8}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiuCHS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/SulaimanyKM18, author = {Sadegh Sulaimany and Mohammad Khansari and Ali Masoudi{-}Nejad}, title = {Link prediction potentials for biological networks}, journal = {Int. J. Data Min. Bioinform.}, volume = {20}, number = {2}, pages = {161--184}, year = {2018}, url = {https://doi.org/10.1504/IJDMB.2018.10015104}, doi = {10.1504/IJDMB.2018.10015104}, timestamp = {Tue, 22 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijdmb/SulaimanyKM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/ZuallaertKSSN18, author = {Jasper Zuallaert and Mijung Kim and Arne Soete and Yvan Saeys and Wesley De Neve}, title = {TISRover: ConvNets learn biologically relevant features for effective translation initiation site prediction}, journal = {Int. J. Data Min. Bioinform.}, volume = {20}, number = {3}, pages = {267--284}, year = {2018}, url = {https://doi.org/10.1504/IJDMB.2018.10016079}, doi = {10.1504/IJDMB.2018.10016079}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/ZuallaertKSSN18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijict/GheraibiaKMM18, author = {Youcef Gheraibia and Sohag Kabir and Abdelouahab Moussaoui and Smaine Mazouzi}, title = {Optimised cost considering Huffman code for biological data compression}, journal = {Int. J. Inf. Commun. Technol.}, volume = {13}, number = {3}, pages = {275--290}, year = {2018}, url = {https://doi.org/10.1504/IJICT.2018.10012283}, doi = {10.1504/IJICT.2018.10012283}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijict/GheraibiaKMM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jdiq/ChenWZLZV18, author = {Qingyu Chen and Yu Wan and Xiuzhen Zhang and Yang Lei and Justin Zobel and Karin Verspoor}, title = {Comparative Analysis of Sequence Clustering Methods for Deduplication of Biological Databases}, journal = {{ACM} J. Data Inf. Qual.}, volume = {9}, number = {3}, pages = {17}, year = {2018}, url = {https://doi.org/10.1145/3131611}, doi = {10.1145/3131611}, timestamp = {Fri, 17 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jdiq/ChenWZLZV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jhir/CakinGBZL18, author = {Hande Cakin and Berk G{\"{o}}rg{\"{u}}l{\"{u}} and Mustafa G{\"{o}}k{\c{c}}e Baydogan and Na Zou and Jing Li}, title = {A Data Adaptive Biological Sequence Representation for Supervised Learning}, journal = {J. Heal. Informatics Res.}, volume = {2}, number = {4}, pages = {448--471}, year = {2018}, url = {https://doi.org/10.1007/s41666-018-0038-5}, doi = {10.1007/S41666-018-0038-5}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jhir/CakinGBZL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/BrandiziSRH18, author = {Marco Brandizi and Ajit Singh and Christopher J. Rawlings and Keywan Hassani{-}Pak}, title = {Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach}, journal = {J. Integr. Bioinform.}, volume = {15}, number = {3}, year = {2018}, url = {https://doi.org/10.1515/jib-2018-0023}, doi = {10.1515/JIB-2018-0023}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/BrandiziSRH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jwscg/Somogyi18, author = {Endre T. Somogyi}, title = {A Dynamic Non-Manifold Mesh Data Structure to Represent Biological Materials}, journal = {J. {WSCG}}, volume = {26}, number = {1}, year = {2018}, url = {https://doi.org/10.24132/jwscg.2018.26.1.3}, doi = {10.24132/JWSCG.2018.26.1.3}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jwscg/Somogyi18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/midm/ManhasDPLACT18, author = {Kiran Pohar Manhas and Shawn X. Dodd and Stacey Page and Nicole Letourneau and Carol E. Adair and Xinjie Cui and Suzanne Tough}, title = {Sharing longitudinal, non-biological birth cohort data: a cross-sectional analysis of parent consent preferences}, journal = {{BMC} Medical Informatics Decis. Mak.}, volume = {18}, number = {1}, pages = {97:1--97:11}, year = {2018}, url = {https://doi.org/10.1186/s12911-018-0683-x}, doi = {10.1186/S12911-018-0683-X}, timestamp = {Sun, 06 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/midm/ManhasDPLACT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Lee0ALBBDSLBNUM18, author = {Sunjae Lee and Cheng Zhang and Muhammad Arif and Zhengtao Liu and Rui Benfeitas and Gholamreza Bidkhori and Sumit Deshmukh and Mohamed Al Shobky and Alen Lovric and Jan Boren and Jens Nielsen and Mathias Uhlen and Adil Mardinoglu}, title = {{TCSBN:} a database of tissue and cancer specific biological networks}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Database-Issue}, pages = {D595--D600}, year = {2018}, url = {https://doi.org/10.1093/nar/gkx994}, doi = {10.1093/NAR/GKX994}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Lee0ALBBDSLBNUM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PutignanoRBA18, author = {Valeria Putignano and Antonio Rosato and Lucia Banci and Claudia Andreini}, title = {MetalPDB in 2018: a database of metal sites in biological macromolecular structures}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Database-Issue}, pages = {D459--D464}, year = {2018}, url = {https://doi.org/10.1093/nar/gkx989}, doi = {10.1093/NAR/GKX989}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PutignanoRBA18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nca/DwivediTKBM18, author = {Vivek Dhar Dwivedi and Indra Prasad Tripathi and Aman Chandra Kaushik and Shiv Bharadwaj and Sarad Kumar Mishra}, title = {Biological Data Analysis Program {(BDAP):} a multitasking biological sequence analysis program}, journal = {Neural Comput. Appl.}, volume = {30}, number = {5}, pages = {1493--1501}, year = {2018}, url = {https://doi.org/10.1007/s00521-016-2772-z}, doi = {10.1007/S00521-016-2772-Z}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nca/DwivediTKBM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LunPS18, author = {Aaron T. L. Lun and Herv{\'{e}} Pag{\`{e}}s and Mike L. Smith}, title = {beachmat: {A} Bioconductor {C++} {API} for accessing high-throughput biological data from a variety of {R} matrix types}, journal = {PLoS Comput. Biol.}, volume = {14}, number = {5}, year = {2018}, url = {https://doi.org/10.1371/journal.pcbi.1006135}, doi = {10.1371/JOURNAL.PCBI.1006135}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/LunPS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LealeBMGS18, author = {Guillermo Leale and Ariel E. Bay{\'{a}} and Diego H. Milone and Pablo M. Granitto and Georgina Stegmayer}, title = {Inferring Unknown Biological Function by Integration of {GO} Annotations and Gene Expression Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {15}, number = {1}, pages = {168--180}, year = {2018}, url = {https://doi.org/10.1109/TCBB.2016.2615960}, doi = {10.1109/TCBB.2016.2615960}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LealeBMGS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PeaseR18, author = {James B. Pease and Benjamin K. Rosenzweig}, title = {Encoding Data Using Biological Principles: The Multisample Variant Format for Phylogenomics and Population Genomics}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {15}, number = {4}, pages = {1231--1238}, year = {2018}, url = {https://doi.org/10.1109/TCBB.2015.2509997}, doi = {10.1109/TCBB.2015.2509997}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PeaseR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tkde/YamadaTLHSSOYMS18, author = {Makoto Yamada and Jiliang Tang and Jose Lugo{-}Martinez and Ermin Hodzic and Raunak Shrestha and Avishek Saha and Hua Ouyang and Dawei Yin and Hiroshi Mamitsuka and S{\"{u}}leyman Cenk Sahinalp and Predrag Radivojac and Filippo Menczer and Yi Chang}, title = {Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data}, journal = {{IEEE} Trans. Knowl. Data Eng.}, volume = {30}, number = {7}, pages = {1352--1365}, year = {2018}, url = {https://doi.org/10.1109/TKDE.2018.2789451}, doi = {10.1109/TKDE.2018.2789451}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tkde/YamadaTLHSSOYMS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tnn/MahmudKHV18, author = {Mufti Mahmud and M. Shamim Kaiser and Amir Hussain and Stefano Vassanelli}, title = {Applications of Deep Learning and Reinforcement Learning to Biological Data}, journal = {{IEEE} Trans. Neural Networks Learn. Syst.}, volume = {29}, number = {6}, pages = {2063--2079}, year = {2018}, url = {https://doi.org/10.1109/TNNLS.2018.2790388}, doi = {10.1109/TNNLS.2018.2790388}, timestamp = {Tue, 25 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tnn/MahmudKHV18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/aaaiss/UwanoT18, author = {Fumito Uwano and Keiki Takadama}, title = {Ensemble Heart Rate Extraction Method for Biological Data from Water Pressure Sensor}, booktitle = {2018 {AAAI} Spring Symposia, Stanford University, Palo Alto, California, USA, March 26-28, 2018}, publisher = {{AAAI} Press}, year = {2018}, url = {https://aaai.org/ocs/index.php/SSS/SSS18/paper/view/17547}, timestamp = {Tue, 08 Jan 2019 14:37:15 +0100}, biburl = {https://dblp.org/rec/conf/aaaiss/UwanoT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/asist/JuK18, author = {Boryung Ju and Youngseek Kim}, title = {Conceptualizing research ethics on scientific data sharing: Evidence from biological scientists}, booktitle = {Building {\&} Sustaining an Ethical Future with Emerging Technology - Proceedings of the 81st ASIS{\&}T Annual Meeting, {ASIST} 2018, Vancouver, BC, Canada, November 10-14, 2018}, series = {Proc. Assoc. Inf. Sci. Technol.}, volume = {55}, number = {1}, pages = {834--836}, publisher = {Wiley}, year = {2018}, url = {https://doi.org/10.1002/pra2.2018.14505501137}, doi = {10.1002/PRA2.2018.14505501137}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/asist/JuK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bdccf/Tang0NZL18, author = {Jianan Tang and Pengfei Xu and Weike Nie and Yi Zhang and Ruyi Liu}, editor = {Zongben Xu and Xinbo Gao and Qiguang Miao and Yunquan Zhang and Jiajun Bu}, title = {A Review of Recent Advances in Identity Identification Technology Based on Biological Features}, booktitle = {Big Data - 6th {CCF} Conference, Big Data 2018, Xi'an, China, October 11-13, 2018, Proceedings}, series = {Communications in Computer and Information Science}, volume = {945}, pages = {178--195}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-981-13-2922-7\_12}, doi = {10.1007/978-981-13-2922-7\_12}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bdccf/Tang0NZL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/TranPA18, author = {Truong X. Tran and Marc L. Pusey and Ramazan S. Ayg{\"{u}}n}, editor = {Huiru Jane Zheng and Zoraida Callejas and David Griol and Haiying Wang and Xiaohua Hu and Harald H. H. W. Schmidt and Jan Baumbach and Julie Dickerson and Le Zhang}, title = {Else-Tree Classifier for Minimizing Misclassification of Biological Data}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2018, Madrid, Spain, December 3-6, 2018}, pages = {2301--2308}, publisher = {{IEEE} Computer Society}, year = {2018}, url = {https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621322}, doi = {10.1109/BIBM.2018.8621322}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/TranPA18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/ZengLNXJ18, author = {Shuai Zeng and Zhen Lyu and Siva Ratna Kumari Narisetti and Dong Xu and Trupti Joshi}, editor = {Huiru Jane Zheng and Zoraida Callejas and David Griol and Haiying Wang and Xiaohua Hu and Harald H. H. W. Schmidt and Jan Baumbach and Julie Dickerson and Le Zhang}, title = {Knowledge Base Commons (KBCommons) v1.0: {A} multi OMICS' web-based data integration framework for biological discoveries}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2018, Madrid, Spain, December 3-6, 2018}, pages = {589--594}, publisher = {{IEEE} Computer Society}, year = {2018}, url = {https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621369}, doi = {10.1109/BIBM.2018.8621369}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/ZengLNXJ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/ZhangL18, author = {Wenxiang Zhang and Xiujuan Lei}, editor = {Huiru Jane Zheng and Zoraida Callejas and David Griol and Haiying Wang and Xiaohua Hu and Harald H. H. W. Schmidt and Jan Baumbach and Julie Dickerson and Le Zhang}, title = {Two-step Random Walk Algorithm to Identify Cancer Genes Based on Various Biological Data}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2018, Madrid, Spain, December 3-6, 2018}, pages = {1296--1301}, publisher = {{IEEE} Computer Society}, year = {2018}, url = {https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621448}, doi = {10.1109/BIBM.2018.8621448}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/ZhangL18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdataconf/ChenSWC18, author = {Huaming Chen and Jun Shen and Lei Wang and Chi{-}Hung Chi}, editor = {Naoki Abe and Huan Liu and Calton Pu and Xiaohua Hu and Nesreen K. Ahmed and Mu Qiao and Yang Song and Donald Kossmann and Bing Liu and Kisung Lee and Jiliang Tang and Jingrui He and Jeffrey S. Saltz}, title = {Towards Biological Sequence Data Service with Insights}, booktitle = {{IEEE} International Conference on Big Data {(IEEE} BigData 2018), Seattle, WA, USA, December 10-13, 2018}, pages = {2847--2854}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/BigData.2018.8622194}, doi = {10.1109/BIGDATA.2018.8622194}, timestamp = {Fri, 19 Nov 2021 16:08:20 +0100}, biburl = {https://dblp.org/rec/conf/bigdataconf/ChenSWC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdatasec/ZhaiLHDHYW18, author = {Xing Zhai and Junnan Liu and Aiqing Han and Shuang Ding and Youliang Huang and Peng Yin and Min Wang}, title = {Research on the Biological Basis of Treating Different Diseases with Same Method Based on Big Data Mining and Complex Network}, booktitle = {4th {IEEE} International Conference on Big Data Security on Cloud, {IEEE} International Conference on High Performance and Smart Computing, and {IEEE} International Conference on Intelligent Data and Security, BigDataSecurity/HPSC/IDS 2018, Omaha, NE, USA, May 3-5, 2018}, pages = {264--269}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/BDS/HPSC/IDS18.2018.00063}, doi = {10.1109/BDS/HPSC/IDS18.2018.00063}, timestamp = {Wed, 14 Jul 2021 09:35:23 +0200}, biburl = {https://dblp.org/rec/conf/bigdatasec/ZhaiLHDHYW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cdc/TuzaS18, author = {Zolt{\'{a}}n A. Tuza and Guy{-}Bart Stan}, title = {Characterization of Biologically Relevant Network Structures form Time-series Data}, booktitle = {57th {IEEE} Conference on Decision and Control, {CDC} 2018, Miami, FL, USA, December 17-19, 2018}, pages = {1089--1095}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/CDC.2018.8619360}, doi = {10.1109/CDC.2018.8619360}, timestamp = {Fri, 04 Mar 2022 13:30:11 +0100}, biburl = {https://dblp.org/rec/conf/cdc/TuzaS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/complexnetworks/KarimKA18, author = {Mohammad Bozlul Karim and Shigehiko Kanaya and Md. Altaf{-}Ul{-}Amin}, editor = {Luca Maria Aiello and Chantal Cherifi and Hocine Cherifi and Renaud Lambiotte and Pietro Li{\'{o}} and Luis M. Rocha}, title = {Comparison of BiClusO with Five Different Biclustering Algorithms Using Biological and Synthetic Data}, booktitle = {Complex Networks and Their Applications {VII} - Volume 2 Proceedings The 7th International Conference on Complex Networks and Their Applications {COMPLEX} {NETWORKS} 2018}, series = {Studies in Computational Intelligence}, volume = {813}, pages = {575--585}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-05414-4\_46}, doi = {10.1007/978-3-030-05414-4\_46}, timestamp = {Thu, 07 Jul 2022 13:32:56 +0200}, biburl = {https://dblp.org/rec/conf/complexnetworks/KarimKA18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dcai/PerscheidU18, author = {Cindy Perscheid and Matthias Uflacker}, editor = {Sara Rodr{\'{\i}}guez and Javier Prieto and Pedro Faria and Slawomir Klos and Alberto Fern{\'{a}}ndez and Santiago Mazuelas and Mar{\'{\i}}a Dolores Jim{\'{e}}nez{-}L{\'{o}}pez and Mar{\'{\i}}a N. Moreno and Elena Maria Navarro Mart{\'{\i}}nez}, title = {Integrating Biological Context into the Analysis of Gene Expression Data}, booktitle = {Distributed Computing and Artificial Intelligence, 15th International Conference, {DCAI} 2018, Toledo, Spain, 20-22 June 2018, Special Sessions {I}}, series = {Advances in Intelligent Systems and Computing}, volume = {801}, pages = {339--343}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-99608-0\_41}, doi = {10.1007/978-3-319-99608-0\_41}, timestamp = {Mon, 11 Mar 2024 20:43:17 +0100}, biburl = {https://dblp.org/rec/conf/dcai/PerscheidU18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dils/WieseWSSG18, author = {Lena Wiese and Chimi Wangmo and Lukas Steuernagel and Armin Otto Schmitt and Mehmet G{\"{u}}ltas}, editor = {S{\"{o}}ren Auer and Maria{-}Esther Vidal}, title = {Construction and Visualization of Dynamic Biological Networks: Benchmarking the Neo4J Graph Database}, booktitle = {Data Integration in the Life Sciences - 13th International Conference, {DILS} 2018, Hannover, Germany, November 20-21, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11371}, pages = {33--43}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-06016-9\_3}, doi = {10.1007/978-3-030-06016-9\_3}, timestamp = {Fri, 09 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/dils/WieseWSSG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dsmp/PerovaLBBZM18, author = {Iryna Perova and Olena Litovchenko and Yevgeniy V. Bodyanskiy and Yelizaveta Brazhnykova and Igor Zavgorodnii and Pavlo Mulesa}, title = {Medical Data-Stream Mining in the Area of Electromagnetic Radiation and Low Temperature Influence on Biological Objects}, booktitle = {Second International Conference on Data Stream Mining {\&} Processing, {DSMP} 2018, Lviv, Ukraine, August 21-25, 2018}, pages = {3--6}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/DSMP.2018.8478577}, doi = {10.1109/DSMP.2018.8478577}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/dsmp/PerovaLBBZM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hicss/SimekDHMOPW18, author = {Olga Simek and Curtis Davis and Andrew Heier and Sanjeev Mohindra and Kyle O'Brien and John Passarelli and Frederick R. Waugh}, editor = {Tung Bui}, title = {XLab: Early Indications {\&} Warnings from Open Source Data with Application to Biological Threat}, booktitle = {51st Hawaii International Conference on System Sciences, {HICSS} 2018, Hilton Waikoloa Village, Hawaii, USA, January 3-6, 2018}, pages = {1--10}, publisher = {ScholarSpace / {AIS} Electronic Library (AISeL)}, year = {2018}, url = {https://hdl.handle.net/10125/50005}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/hicss/SimekDHMOPW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icete/SaibeneCDFG18, author = {Aurora Saibene and Silvia Corchs and Roberta Daini and Alessio Facchin and Francesca Gasparini}, editor = {Christian Callegari and Marten van Sinderen and Paulo Novais and Panagiotis G. Sarigiannidis and Sebastiano Battiato and {\'{A}}ngel Serrano S{\'{a}}nchez de Le{\'{o}}n and Pascal Lorenz and Mohammad S. Obaidat}, title = {{EEG} Data of Face Recognition in Case of Biological Compatible Changes: {A} Pilot Study on Healthy People}, booktitle = {Proceedings of the 15th International Joint Conference on e-Business and Telecommunications, {ICETE} 2018 - Volume 1: DCNET, ICE-B, OPTICS, {SIGMAP} and WINSYS, Porto, Portugal, July 26-28, 2018}, pages = {580--586}, publisher = {SciTePress}, year = {2018}, url = {https://doi.org/10.5220/0006909105800586}, doi = {10.5220/0006909105800586}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icete/SaibeneCDFG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icic/HuertaMA18, author = {Edmundo Bonilla Huerta and Roberto Morales{-}Caporal and M. Antonio Arjona{-}L{\'{o}}pez}, editor = {De{-}Shuang Huang and Kang{-}Hyun Jo and Xiaolong Zhang}, title = {Exploration and Exploitation of High Dimensional Biological Datasets Using a Wrapper Approach Based on Strawberry Plant Algorithm}, booktitle = {Intelligent Computing Theories and Application - 14th International Conference, {ICIC} 2018, Wuhan, China, August 15-18, 2018, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {10955}, pages = {307--317}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-95933-7\_38}, doi = {10.1007/978-3-319-95933-7\_38}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icic/HuertaMA18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isda/VanahalliP18, author = {Manjunath K. Vanahalli and Nagamma Patil}, editor = {Ajith Abraham and Aswani Kumar Cherukuri and Patricia Melin and Niketa Gandhi}, title = {Distributed Mining of Significant Frequent Colossal Closed Itemsets from Long Biological Dataset}, booktitle = {Intelligent Systems Design and Applications - 18th International Conference on Intelligent Systems Design and Applications, {ISDA} 2018, Vellore, India, December 6-8, 2018, Volume 1}, series = {Advances in Intelligent Systems and Computing}, volume = {940}, pages = {891--902}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-16657-1\_83}, doi = {10.1007/978-3-030-16657-1\_83}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isda/VanahalliP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/MeerMUMB18, author = {Hossam Al Meer and Raghvendra Mall and Ehsan Ullah and Nasreddine Megrez and Halima Bensmail}, editor = {Ignacio Rojas and Francisco M. Ortu{\~{n}}o Guzman}, title = {ISaaC: Identifying Structural Relations in Biological Data with Copula-Based Kernel Dependency Measures}, booktitle = {Bioinformatics and Biomedical Engineering - 6th International Work-Conference, {IWBBIO} 2018, Granada, Spain, April 25-27, 2018, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {10813}, pages = {71--82}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-78723-7\_6}, doi = {10.1007/978-3-319-78723-7\_6}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iwbbio/MeerMUMB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwci/ParvezHGR18, author = {H. M. Shahriar Parvez and Saqib Hakak and Gulshan Amin Gilkar and Mahmud Abdur Rahman}, editor = {Mohammad Shorif Uddin and Jagdish Chand Bansal}, title = {Factorial Analysis of Biological Datasets}, booktitle = {Proceedings of International Joint Conference on Computational Intelligence, {IJCCI} 2018, Dhaka, Bangladesh, December 14-15, 2018}, series = {Algorithms for Intelligent Systems}, pages = {1--9}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-981-13-7564-4\_1}, doi = {10.1007/978-981-13-7564-4\_1}, timestamp = {Sat, 22 Aug 2020 14:08:05 +0200}, biburl = {https://dblp.org/rec/conf/iwci/ParvezHGR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mldm/SokolovskaPFZ18, author = {Nataliya Sokolovska and Olga Permiakova and Sofia K. Forslund and Jean{-}Daniel Zucker}, editor = {Petra Perner}, title = {A Semi-supervised Approach to Discover Bivariate Causality in Large Biological Data}, booktitle = {Machine Learning and Data Mining in Pattern Recognition - 14th International Conference, {MLDM} 2018, New York, NY, USA, July 15-19, 2018, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {10934}, pages = {406--420}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-96136-1\_32}, doi = {10.1007/978-3-319-96136-1\_32}, timestamp = {Fri, 27 Dec 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/mldm/SokolovskaPFZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mln/AzzawiHAX18, author = {Hasseeb Azzawi and Jingyu Hou and Russul Alanni and Yong Xiang}, editor = {{\'{E}}ric Renault and Paul M{\"{u}}hlethaler and Selma Boumerdassi}, title = {A Hybrid Neural Network Approach for Lung Cancer Classification with Gene Expression Dataset and Prior Biological Knowledge}, booktitle = {Machine Learning for Networking - First International Conference, {MLN} 2018, Paris, France, November 27-29, 2018, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {11407}, pages = {279--293}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-19945-6\_20}, doi = {10.1007/978-3-030-19945-6\_20}, timestamp = {Wed, 29 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/mln/AzzawiHAX18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pacbb/ZakiTAJA18, author = {Nazar Zaki and Chandana Tennakoon and Hany Al Ashwal and Alanoud Al Jaberi and Amel Al Ameri}, editor = {Florentino Fdez{-}Riverola and Mohd Saberi Mohamad and Miguel Rocha and Juan F. De Paz and Pascual Gonz{\'{a}}lez}, title = {Methods of Creating Knowledge Graph by Linking Biological Databases}, booktitle = {Practical Applications of Computational Biology and Bioinformatics, 12th International Conference, {PACBB} 2018, Toledo, Spain, 20-22 May, 2018}, series = {Advances in Intelligent Systems and Computing}, volume = {803}, pages = {52--62}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-98702-6\_7}, doi = {10.1007/978-3-319-98702-6\_7}, timestamp = {Wed, 12 Oct 2022 08:58:53 +0200}, biburl = {https://dblp.org/rec/conf/pacbb/ZakiTAJA18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sca2/AndaloussiKH18, author = {Ouissam El Andaloussi and M'hamed A{\"{\i}}t Kbir and Badr Din Rossi Hassani}, title = {Biological data annotation using complementary and alternative Medicine with a collection tracking system (Hirbalink)}, booktitle = {Proceedings of the 3rd International Conference on Smart City Applications, {SCA} 2018, Tetouan, Morocco, October 10-11, 2018}, pages = {61:1--61:5}, publisher = {{ACM}}, year = {2018}, url = {https://doi.org/10.1145/3286606.3286838}, doi = {10.1145/3286606.3286838}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/sca2/AndaloussiKH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sca2/HanafiRHK18, author = {Hamza Hanafi and Fadoua Rafii and Badr Dine Rossi Hassani and M'hamed A{\"{\i}}t Kbir}, title = {A graph based model for multiple biological data sources integration}, booktitle = {Proceedings of the 3rd International Conference on Smart City Applications, {SCA} 2018, Tetouan, Morocco, October 10-11, 2018}, pages = {49:1--49:5}, publisher = {{ACM}}, year = {2018}, url = {https://doi.org/10.1145/3286606.3286826}, doi = {10.1145/3286606.3286826}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/sca2/HanafiRHK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/spawc/MertzanisPSK18, author = {Lambros Mertzanis and Athina Panotopoulou and Maria Skoularidou and Ioannis Kontoyiannis}, title = {Deep Tree Models for 'Big' Biological Data}, booktitle = {19th {IEEE} International Workshop on Signal Processing Advances in Wireless Communications, {SPAWC} 2018, Kalamata, Greece, June 25-28, 2018}, pages = {1--5}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/SPAWC.2018.8445994}, doi = {10.1109/SPAWC.2018.8445994}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/spawc/MertzanisPSK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/vcbm/KnotelBSB18, author = {David Kn{\"{o}}tel and Carola Becker and Gerhard Scholtz and Daniel Baum}, editor = {Anna Puig and Thomas Schultz and Anna Vilanova and Ingrid Hotz and Barbora Kozl{\'{\i}}kov{\'{a}} and Pere{-}Pau V{\'{a}}zquez}, title = {Global and Local Mesh Morphing for Complex Biological Objects from {\(\mathrm{\mu}\)}CT Data}, booktitle = {8th Eurographics Workshop on Visual Computing for Biology and Medicine, VCBM@MICCAI 2018, Granada, Spain, September 20-21, 2018}, pages = {179--183}, publisher = {Eurographics Association}, year = {2018}, url = {https://doi.org/10.2312/vcbm.20181243}, doi = {10.2312/VCBM.20181243}, timestamp = {Wed, 15 Jul 2020 17:34:31 +0200}, biburl = {https://dblp.org/rec/conf/vcbm/KnotelBSB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/18/MallikBSBC18, author = {Saurav Mallik and Tapas Bhadra and Soumita Seth and Sanghamitra Bandyopadhyay and Jianjiao Chen}, editor = {Jyotsna Kumar Mandal and Somnath Mukhopadhyay and Paramartha Dutta}, title = {Multi-Objective Optimization Approaches in Biological Learning System on Microarray Data}, booktitle = {Multi-Objective Optimization - Evolutionary to Hybrid Framework}, pages = {159--180}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-981-13-1471-1\_7}, doi = {10.1007/978-981-13-1471-1\_7}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/18/MallikBSBC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/db/0001L18, author = {Arnab Bhattacharya and Vebjorn Ljosa}, editor = {Ling Liu and M. Tamer {\"{O}}zsu}, title = {Image Management for Biological Data}, booktitle = {Encyclopedia of Database Systems, Second Edition}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-1-4614-8265-9\_629}, doi = {10.1007/978-1-4614-8265-9\_629}, timestamp = {Thu, 14 Feb 2019 09:43:36 +0100}, biburl = {https://dblp.org/rec/reference/db/0001L18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/db/Gupta18a, author = {Amarnath Gupta}, editor = {Ling Liu and M. Tamer {\"{O}}zsu}, title = {Biological Networks}, booktitle = {Encyclopedia of Database Systems, Second Edition}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-1-4614-8265-9\_1308}, doi = {10.1007/978-1-4614-8265-9\_1308}, timestamp = {Thu, 14 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/db/Gupta18a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/db/Gupta18b, author = {Amarnath Gupta}, editor = {Ling Liu and M. Tamer {\"{O}}zsu}, title = {Biological Sequences}, booktitle = {Encyclopedia of Database Systems, Second Edition}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-1-4614-8265-9\_1307}, doi = {10.1007/978-1-4614-8265-9\_1307}, timestamp = {Thu, 14 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/db/Gupta18b.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/db/Kahveci18, author = {Tamer Kahveci}, editor = {Ling Liu and M. Tamer {\"{O}}zsu}, title = {Index Structures for Biological Sequences}, booktitle = {Encyclopedia of Database Systems, Second Edition}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-1-4614-8265-9\_1434}, doi = {10.1007/978-1-4614-8265-9\_1434}, timestamp = {Thu, 14 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/db/Kahveci18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/db/LacroixKMRWFB18, author = {Zo{\'{e}} Lacroix and Cartik R. Kothari and Peter Mork and Rami Rifaieh and Mark D. Wilkinson and Juliana Freire and Sarah Cohen Boulakia}, editor = {Ling Liu and M. Tamer {\"{O}}zsu}, title = {Biological Resource Discovery}, booktitle = {Encyclopedia of Database Systems, Second Edition}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-1-4614-8265-9\_1560}, doi = {10.1007/978-1-4614-8265-9\_1560}, timestamp = {Thu, 14 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/db/LacroixKMRWFB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/db/LacroixKMWB18, author = {Zo{\'{e}} Lacroix and Cartik R. Kothari and Peter Mork and Mark D. Wilkinson and Sarah Cohen Boulakia}, editor = {Ling Liu and M. Tamer {\"{O}}zsu}, title = {Biological Metadata Management}, booktitle = {Encyclopedia of Database Systems, Second Edition}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-1-4614-8265-9\_628}, doi = {10.1007/978-1-4614-8265-9\_628}, timestamp = {Thu, 14 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/db/LacroixKMWB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/db/Srinivasan18, author = {Padmini Srinivasan}, editor = {Ling Liu and M. Tamer {\"{O}}zsu}, title = {Text Mining of Biological Resources}, booktitle = {Encyclopedia of Database Systems, Second Edition}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-1-4614-8265-9\_635}, doi = {10.1007/978-1-4614-8265-9\_635}, timestamp = {Thu, 14 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/db/Srinivasan18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/db/TataP18, author = {Sandeep Tata and Jignesh M. Patel}, editor = {Ling Liu and M. Tamer {\"{O}}zsu}, title = {Query Languages and Evaluation Techniques for Biological Sequence Data}, booktitle = {Encyclopedia of Database Systems, Second Edition}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-1-4614-8265-9\_630}, doi = {10.1007/978-1-4614-8265-9\_630}, timestamp = {Thu, 14 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/db/TataP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1807-07127, author = {Erin Connelly and Charo I. Del Genio and Freya Harrison}, title = {Datamining a medieval medical text reveals patterns in ingredient choice that reflect biological activity against the causative agents of specified infections}, journal = {CoRR}, volume = {abs/1807.07127}, year = {2018}, url = {http://arxiv.org/abs/1807.07127}, eprinttype = {arXiv}, eprint = {1807.07127}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1807-07127.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1807-10956, author = {Wenwen Min and Juan Liu and Shihua Zhang}, title = {Group-sparse {SVD} Models and Their Applications in Biological Data}, journal = {CoRR}, volume = {abs/1807.10956}, year = {2018}, url = {http://arxiv.org/abs/1807.10956}, eprinttype = {arXiv}, eprint = {1807.10956}, timestamp = {Wed, 04 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1807-10956.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1808-08124, author = {Charles B. Delahunt and J. Nathan Kutz}, title = {Insect cyborgs: Biological feature generators improve machine learning accuracy on limited data}, journal = {CoRR}, volume = {abs/1808.08124}, year = {2018}, url = {http://arxiv.org/abs/1808.08124}, eprinttype = {arXiv}, eprint = {1808.08124}, timestamp = {Sun, 02 Sep 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1808-08124.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1809-08862, author = {Zolt{\'{a}}n A. Tuza and Guy{-}Bart Stan}, title = {Characterization of Biologically Relevant Network Structures form Time-series Data}, journal = {CoRR}, volume = {abs/1809.08862}, year = {2018}, url = {http://arxiv.org/abs/1809.08862}, eprinttype = {arXiv}, eprint = {1809.08862}, timestamp = {Fri, 05 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1809-08862.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1811-03567, author = {Will Xiao and Honglin Chen and Qianli Liao and Tomaso A. Poggio}, title = {Biologically-plausible learning algorithms can scale to large datasets}, journal = {CoRR}, volume = {abs/1811.03567}, year = {2018}, url = {http://arxiv.org/abs/1811.03567}, eprinttype = {arXiv}, eprint = {1811.03567}, timestamp = {Sat, 23 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1811-03567.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1812-04778, author = {Tzu{-}Yu Liu and Ajay Kannan and Adam Drake and Marvin Bertin and Nathan Wan}, title = {Bridging the Generalization Gap: Training Robust Models on Confounded Biological Data}, journal = {CoRR}, volume = {abs/1812.04778}, year = {2018}, url = {http://arxiv.org/abs/1812.04778}, eprinttype = {arXiv}, eprint = {1812.04778}, timestamp = {Tue, 01 Jan 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1812-04778.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dagstuhl-reports/AertsGMN18, author = {Jan Aerts and Nils Gehlenborg and Georgeta Elisabeta Marai and Kay Katja Nieselt}, title = {Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161)}, journal = {Dagstuhl Reports}, volume = {8}, number = {4}, pages = {32--71}, year = {2018}, url = {https://doi.org/10.4230/DagRep.8.4.32}, doi = {10.4230/DAGREP.8.4.32}, timestamp = {Tue, 02 Oct 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/dagstuhl-reports/AertsGMN18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/f1000research/GodardE18, author = {Patrice Godard and Jonathan van Eyll}, title = {{BED:} a Biological Entity Dictionary based on a graph data model}, journal = {F1000Research}, volume = {7}, pages = {195}, year = {2018}, url = {https://doi.org/10.12688/f1000research.13925.1}, doi = {10.12688/F1000RESEARCH.13925.1}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/f1000research/GodardE18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Chen17c, author = {Qingyu Chen}, title = {Duplication in biological databases: definitions, impacts and methods}, school = {University of Melbourne, Parkville, Victoria, Australia}, year = {2017}, url = {https://hdl.handle.net/11343/197466}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Chen17c.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Ghazanfar17, author = {Shila Ghazanfar}, title = {Statistical approaches to harness high throughput sequencing data in diverse biological systems}, school = {University of Sydney, Australia}, year = {2017}, url = {https://hdl.handle.net/2123/17268}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Ghazanfar17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Hou17, author = {Wenpin Hou}, title = {Mathematical modelling and optimization in biological networks and data}, school = {University of Hong Kong, Pokfulam, Hong Kong}, year = {2017}, url = {http://hdl.handle.net/10722/249921}, timestamp = {Thu, 02 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Hou17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/Chambon17, author = {Arthur Chambon}, title = {Caract{\'{e}}risation logique de donn{\'{e}}es : application aux donn{\'{e}}es biologiques. (Logical Characterization of Data : application to Biological Data)}, school = {University of Angers, France}, year = {2017}, url = {https://tel.archives-ouvertes.fr/tel-01785076}, timestamp = {Tue, 21 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/hal/Chambon17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithms/AbdallahRMRI17, author = {Emna Ben Abdallah and Tony Ribeiro and Morgan Magnin and Olivier H. Roux and Katsumi Inoue}, title = {Modeling Delayed Dynamics in Biological Regulatory Networks from Time Series Data}, journal = {Algorithms}, volume = {10}, number = {1}, pages = {8}, year = {2017}, url = {https://doi.org/10.3390/a10010008}, doi = {10.3390/A10010008}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/algorithms/AbdallahRMRI17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/asc/PashaeiA17, author = {Elnaz Pashaei and Nizamettin Aydin}, title = {Binary black hole algorithm for feature selection and classification on biological data}, journal = {Appl. Soft Comput.}, volume = {56}, pages = {94--106}, year = {2017}, url = {https://doi.org/10.1016/j.asoc.2017.03.002}, doi = {10.1016/J.ASOC.2017.03.002}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/asc/PashaeiA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/Abriata17, author = {Luciano A. Abriata}, title = {Structural database resources for biological macromolecules}, journal = {Briefings Bioinform.}, volume = {18}, number = {4}, pages = {659--669}, year = {2017}, url = {https://doi.org/10.1093/bib/bbw049}, doi = {10.1093/BIB/BBW049}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/Abriata17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/TaylorRKWK17, author = {Sandra L. Taylor and L. Renee Ruhaak and Karen Kelly and Robert H. Weiss and Kyoungmi Kim}, title = {Effects of imputation on correlation: implications for analysis of mass spectrometry data from multiple biological matrices}, journal = {Briefings Bioinform.}, volume = {18}, number = {2}, pages = {312--320}, year = {2017}, url = {https://doi.org/10.1093/bib/bbw010}, doi = {10.1093/BIB/BBW010}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/TaylorRKWK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GuntschHHCR17, author = {Anton G{\"{u}}ntsch and Roger Hyam and Gregor Hagedorn and Simon Chagnoux and Dominik R{\"{o}}pert and Ana Casino and Gabi Droege and Falko Gl{\"{o}}ckler and Karsten G{\"{o}}dderz and Quentin Groom and Jana Hoffmann and Ayco Holleman and Mat{\'{u}}s Kempa and Hanna Koivula and Karol Marhold and Nicky Nicolson and Vincent S. Smith and Dagmar Triebel}, title = {Actionable, long-term stable and semantic web compatible identifiers for access to biological collection objects}, journal = {Database J. Biol. Databases Curation}, volume = {2017}, pages = {bax003}, year = {2017}, url = {https://doi.org/10.1093/database/bax003}, doi = {10.1093/DATABASE/BAX003}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/GuntschHHCR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/RavikumarRL17, author = {K. E. Ravikumar and Majid Rastegar{-}Mojarad and Hongfang Liu}, title = {BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences}, journal = {Database J. Biol. Databases Curation}, volume = {2017}, pages = {baw156}, year = {2017}, url = {https://doi.org/10.1093/database/baw156}, doi = {10.1093/DATABASE/BAW156}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/RavikumarRL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BerchtoldCZ17, author = {Evi Berchtold and Gergely Csaba and Ralf Zimmer}, title = {RelExplain - integrating data and networks to explain biological processes}, journal = {Bioinform.}, volume = {33}, number = {12}, pages = {1837--1844}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx060}, doi = {10.1093/BIOINFORMATICS/BTX060}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BerchtoldCZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JurtzJNANSWS17, author = {Vanessa Isabell Jurtz and Alexander Rosenberg Johansen and Morten Nielsen and Jos{\'{e}} Juan Almagro Armenteros and Henrik Nielsen and Casper Kaae S{\o}nderby and Ole Winther and S{\o}ren Kaae S{\o}nderby}, title = {An introduction to deep learning on biological sequence data: examples and solutions}, journal = {Bioinform.}, volume = {33}, number = {22}, pages = {3685--3690}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx531}, doi = {10.1093/BIOINFORMATICS/BTX531}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JurtzJNANSWS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KleinSBAR17, author = {Max Klein and Rati Sharma and Christopher Herrick Bohrer and Cameron M. Avelis and Elijah Roberts}, title = {Biospark: scalable analysis of large numerical datasets from biological simulations and experiments using Hadoop and Spark}, journal = {Bioinform.}, volume = {33}, number = {2}, pages = {303--305}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btw614}, doi = {10.1093/BIOINFORMATICS/BTW614}, timestamp = {Fri, 08 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KleinSBAR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RussoKWPSSHZ17, author = {Daniel P. Russo and Marlene T. Kim and Wenyi Wang and Daniel Pinolini and Sunil M. Shende and Judy Strickland and Thomas Hartung and Hao Zhu}, title = {CIIPro: a new read-across portal to fill data gaps using public large-scale chemical and biological data}, journal = {Bioinform.}, volume = {33}, number = {3}, pages = {464--466}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btw640}, doi = {10.1093/BIOINFORMATICS/BTW640}, timestamp = {Fri, 10 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RussoKWPSSHZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SalviatoDCR17, author = {Elisa Salviato and Vera Djordjilovic and Monica Chiogna and Chiara Romualdi}, title = {simPATHy: a new method for simulating data from perturbed biological PATHways}, journal = {Bioinform.}, volume = {33}, number = {3}, pages = {456--457}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btw642}, doi = {10.1093/BIOINFORMATICS/BTW642}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SalviatoDCR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SeversonMLB17, author = {Kristen A. Severson and Brinda Monian and J. Christopher Love and Richard D. Braatz}, title = {A method for learning a sparse classifier in the presence of missing data for high-dimensional biological datasets}, journal = {Bioinform.}, volume = {33}, number = {18}, pages = {2897--2905}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx224}, doi = {10.1093/BIOINFORMATICS/BTX224}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SeversonMLB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TaylorRWKK17, author = {Sandra L. Taylor and L. Renee Ruhaak and Robert H. Weiss and Karen Kelly and Kyoungmi Kim}, title = {Multivariate two-part statistics for analysis of correlated mass spectrometry data from multiple biological specimens}, journal = {Bioinform.}, volume = {33}, number = {1}, pages = {17--25}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btw578}, doi = {10.1093/BIOINFORMATICS/BTW578}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TaylorRWKK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GuhlinSZTY17, author = {Joseph Guhlin and Kevin A. T. Silverstein and Peng Zhou and Peter Tiffin and Nevin D. Young}, title = {{ODG:} Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {367:1--367:8}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1777-7}, doi = {10.1186/S12859-017-1777-7}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/GuhlinSZTY17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HenriquesFM17, author = {Rui Henriques and Francisco L. Ferreira and Sara C. Madeira}, title = {BicPAMS: software for biological data analysis with pattern-based biclustering}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {82:1--82:16}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1493-3}, doi = {10.1186/S12859-017-1493-3}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HenriquesFM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HenriquesFM17a, author = {Rui Henriques and Francisco L. Ferreira and Sara C. Madeira}, title = {Erratum to: BicPAMS: software for biological data analysis with pattern-based biclustering}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {162:1--162:2}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1573-4}, doi = {10.1186/S12859-017-1573-4}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HenriquesFM17a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KangDZZZ17, author = {Tianyu Kang and Wei Ding and Luoyan Zhang and Daniel Ziemek and Kourosh Zarringhalam}, title = {A biological network-based regularized artificial neural network model for robust phenotype prediction from gene expression data}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {565:1--565:11}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1984-2}, doi = {10.1186/S12859-017-1984-2}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KangDZZZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LiSL17, author = {Ziyi Li and Sandra E. Safo and Qi Long}, title = {Incorporating biological information in sparse principal component analysis with application to genomic data}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {332}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1740-7}, doi = {10.1186/S12859-017-1740-7}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LiSL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LowKT17, author = {Joel Z. B. Low and Tsung Fei Khang and Martti T. Tammi}, title = {{CORNAS:} coverage-dependent RNA-Seq analysis of gene expression data without biological replicates}, journal = {{BMC} Bioinform.}, volume = {18}, number = {16}, pages = {243--253}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1974-4}, doi = {10.1186/S12859-017-1974-4}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LowKT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MurrayMF17, author = {Paul Murray and Fintan McGee and Angus Graeme Forbes}, title = {A taxonomy of visualization tasks for the analysis of biological pathway data}, journal = {{BMC} Bioinform.}, volume = {18}, number = {{S-2}}, pages = {21:1--21:13}, year = {2017}, url = {https://doi.org/10.1186/s12859-016-1443-5}, doi = {10.1186/S12859-016-1443-5}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MurrayMF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SmelterAM17, author = {Andrey Smelter and Morgan Astra and Hunter N. B. Moseley}, title = {A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {175:1--175:12}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1580-5}, doi = {10.1186/S12859-017-1580-5}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SmelterAM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZakiT17, author = {Nazar Zaki and Chandana Tennakoon}, title = {BioCarian: search engine for exploratory searches in heterogeneous biological databases}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {435:1--435:15}, year = {2017}, url = {https://doi.org/10.1186/s12859-017-1840-4}, doi = {10.1186/S12859-017-1840-4}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZakiT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangCLLTL17, author = {Wen Zhang and Yanlin Chen and Feng Liu and Fei Luo and Gang Tian and Xiaohong Li}, title = {Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data}, journal = {{BMC} Bioinform.}, volume = {18}, number = {1}, pages = {18:1--18:12}, year = {2017}, url = {https://doi.org/10.1186/s12859-016-1415-9}, doi = {10.1186/S12859-016-1415-9}, timestamp = {Tue, 21 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangCLLTL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/WangZC17, author = {Yong Wang and Xiang{-}Sun Zhang and Luonan Chen}, title = {Understanding biological systems through the lens of data}, journal = {{BMC} Syst. Biol.}, volume = {11}, number = {{S-4}}, pages = {77:1--77:2}, year = {2017}, url = {https://doi.org/10.1186/s12918-017-0450-0}, doi = {10.1186/S12918-017-0450-0}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/WangZC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/data/SubramanianG17, author = {Sandeep Subramanian and Madhavi K. Ganapathiraju}, title = {Antibody Exchange: Information Extraction of Biological Antibody Donation and a Web-Portal to Find Donors and Seekers}, journal = {Data}, volume = {2}, number = {4}, pages = {38}, year = {2017}, url = {https://doi.org/10.3390/data2040038}, doi = {10.3390/DATA2040038}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/data/SubramanianG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ejes/WangHC17, author = {Shujuan Wang and Long He and Guiru Cheng}, title = {Energy consumption optimization management mechanism based on drug green crowd data in biological pharmaceutical cloud environment}, journal = {{EURASIP} J. Embed. Syst.}, volume = {2017}, pages = {21}, year = {2017}, url = {https://doi.org/10.1186/s13639-017-0071-0}, doi = {10.1186/S13639-017-0071-0}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ejes/WangHC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fgcs/PedersenB17, author = {Edvard Pedersen and Lars Ailo Bongo}, title = {Large-scale biological meta-database management}, journal = {Future Gener. Comput. Syst.}, volume = {67}, pages = {481--489}, year = {2017}, url = {https://doi.org/10.1016/j.future.2016.02.010}, doi = {10.1016/J.FUTURE.2016.02.010}, timestamp = {Wed, 19 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/fgcs/PedersenB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijbra/LuWK17, author = {Jing Lu and Cuiqing Wang and Malcolm Keech}, title = {A novel approach to knowledge discovery and representation in biological databases}, journal = {Int. J. Bioinform. Res. Appl.}, volume = {13}, number = {4}, pages = {352--375}, year = {2017}, url = {https://doi.org/10.1504/IJBRA.2017.10007990}, doi = {10.1504/IJBRA.2017.10007990}, timestamp = {Fri, 11 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijbra/LuWK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/HuangLLL17, author = {Hai{-}Hui Huang and Xiao{-}Ying Liu and Hui{-}Min Li and Yong Liang}, title = {Molecular pathway identification using a new L\({}_{\mbox{1/2}}\) solver and biological network-constrained model}, journal = {Int. J. Data Min. Bioinform.}, volume = {17}, number = {3}, pages = {189--205}, year = {2017}, url = {https://doi.org/10.1504/IJDMB.2017.10006244}, doi = {10.1504/IJDMB.2017.10006244}, timestamp = {Fri, 16 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/HuangLLL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/Raza17, author = {Khalid Raza}, title = {Formal concept analysis for knowledge discovery from biological data}, journal = {Int. J. Data Min. Bioinform.}, volume = {18}, number = {4}, pages = {281--300}, year = {2017}, url = {https://doi.org/10.1504/IJDMB.2017.10009312}, doi = {10.1504/IJDMB.2017.10009312}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/Raza17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbi/BouadjenekVZ17, author = {Mohamed Reda Bouadjenek and Karin Verspoor and Justin Zobel}, title = {Automated detection of records in biological sequence databases that are inconsistent with the literature}, journal = {J. Biomed. Informatics}, volume = {71}, pages = {229--240}, year = {2017}, url = {https://doi.org/10.1016/j.jbi.2017.06.015}, doi = {10.1016/J.JBI.2017.06.015}, timestamp = {Thu, 17 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbi/BouadjenekVZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/GogoshinBR17, author = {Grigoriy Gogoshin and Eric Boerwinkle and Andrei S. Rodin}, title = {New Algorithm and Software (BNOmics) for Inferring and Visualizing Bayesian Networks from Heterogeneous Big Biological and Genetic Data}, journal = {J. Comput. Biol.}, volume = {24}, number = {4}, pages = {340--356}, year = {2017}, url = {https://doi.org/10.1089/cmb.2016.0100}, doi = {10.1089/CMB.2016.0100}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/GogoshinBR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcc/JungS17, author = {Jaewoon Jung and Yuji Sugita}, title = {Multiple program/multiple data molecular dynamics method with multiple time step integrator for large biological systems}, journal = {J. Comput. Chem.}, volume = {38}, number = {16}, pages = {1410--1418}, year = {2017}, url = {https://doi.org/10.1002/jcc.24511}, doi = {10.1002/JCC.24511}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcc/JungS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/ChenHSO17, author = {Ming Chen and Andrew P. Harrison and Hugh P. Shanahan and Yuriy L. Orlov}, title = {Biological Big Bytes: Integrative Analysis of Large Biological Datasets}, journal = {J. Integr. Bioinform.}, volume = {14}, number = {3}, year = {2017}, url = {https://doi.org/10.1515/jib-2017-0052}, doi = {10.1515/JIB-2017-0052}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jib/ChenHSO17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/Hassani-PakR17, author = {Keywan Hassani{-}Pak and Christopher J. Rawlings}, title = {Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes}, journal = {J. Integr. Bioinform.}, volume = {14}, number = {1}, year = {2017}, url = {https://doi.org/10.1515/jib-2016-0002}, doi = {10.1515/JIB-2016-0002}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/Hassani-PakR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Dabrowski-Tumanski17, author = {Pawel Dabrowski{-}Tumanski and Aleksandra I. Jarmolinska and Wanda Niemyska and Eric J. Rawdon and Kenneth C. Millett and Joanna I. Sulkowska}, title = {LinkProt: a database collecting information about biological links}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Database-Issue}, pages = {D243--D249}, year = {2017}, url = {https://doi.org/10.1093/nar/gkw976}, doi = {10.1093/NAR/GKW976}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Dabrowski-Tumanski17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ParkSBGL17, author = {Young Mi Park and Silvano Squizzato and Nicola Buso and Tamer Gur and Rodrigo Lopez}, title = {The {EBI} search engine: {EBI} search as a service - making biological data accessible for all}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Webserver-Issue}, pages = {W545--W549}, year = {2017}, url = {https://doi.org/10.1093/nar/gkx359}, doi = {10.1093/NAR/GKX359}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/ParkSBGL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/HuertasOOGMBM17, author = {Ismael Huertas and Marianne Oldehinkel and Erik S. B. van Oort and David Garcia{-}Solis and Pablo Mir and Christian F. Beckmann and Andre F. Marquand}, title = {A Bayesian spatial model for neuroimaging data based on biologically informed basis functions}, journal = {NeuroImage}, volume = {161}, pages = {134--148}, year = {2017}, url = {https://doi.org/10.1016/j.neuroimage.2017.08.009}, doi = {10.1016/J.NEUROIMAGE.2017.08.009}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/HuertasOOGMBM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pieee/NguyenMTD17, author = {Tin Chi Nguyen and Cristina Mitrea and Rebecca Tagett and Sorin Draghici}, title = {{DANUBE:} Data-Driven Meta-ANalysis Using UnBiased Empirical Distributions - Applied to Biological Pathway Analysis}, journal = {Proc. {IEEE}}, volume = {105}, number = {3}, pages = {496--515}, year = {2017}, url = {https://doi.org/10.1109/JPROC.2015.2507119}, doi = {10.1109/JPROC.2015.2507119}, timestamp = {Fri, 02 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/pieee/NguyenMTD17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BaroneWM17, author = {Lindsay Barone and Jason Williams and David Micklos}, title = {Unmet needs for analyzing biological big data: {A} survey of 704 {NSF} principal investigators}, journal = {PLoS Comput. Biol.}, volume = {13}, number = {10}, year = {2017}, url = {https://doi.org/10.1371/journal.pcbi.1005755}, doi = {10.1371/JOURNAL.PCBI.1005755}, timestamp = {Fri, 18 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/BaroneWM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/LiJCLM17, author = {Yang Li and Alexis A. Jourdain and Sarah E. Calvo and Jun S. Liu and Vamsi K. Mootha}, title = {CLIC, a tool for expanding biological pathways based on co-expression across thousands of datasets}, journal = {PLoS Comput. Biol.}, volume = {13}, number = {7}, year = {2017}, url = {https://doi.org/10.1371/journal.pcbi.1005653}, doi = {10.1371/JOURNAL.PCBI.1005653}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/LiJCLM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WangHZKBG17, author = {Bo Wang and Lin Huang and Yuke Zhu and Anshul Kundaje and Serafim Batzoglou and Anna Goldenberg}, title = {Vicus: Exploiting local structures to improve network-based analysis of biological data}, journal = {PLoS Comput. Biol.}, volume = {13}, number = {10}, year = {2017}, url = {https://doi.org/10.1371/journal.pcbi.1005621}, doi = {10.1371/JOURNAL.PCBI.1005621}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/WangHZKBG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/00010WN17, author = {Fei Wang and Xiaoli Li and Jason T. L. Wang and See{-}Kiong Ng}, title = {Guest Editorial: Special Section on Biological Data Mining and Its Applications in Healthcare}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {14}, number = {3}, pages = {501--502}, year = {2017}, url = {https://doi.org/10.1109/TCBB.2016.2612558}, doi = {10.1109/TCBB.2016.2612558}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/00010WN17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/WangDLWZ17, author = {Chao Wang and Dong Dai and Xi Li and Aili Wang and Xuehai Zhou}, title = {SuperMIC: Analyzing Large Biological Datasets in Bioinformatics with Maximal Information Coefficient}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {14}, number = {4}, pages = {783--795}, year = {2017}, url = {https://doi.org/10.1109/TCBB.2016.2550430}, doi = {10.1109/TCBB.2016.2550430}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/WangDLWZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/amcc/AchantaMV17, author = {Hema Kumari Achanta and Burook Misganaw and Mathukumalli Vidyasagar}, title = {A multi-view {\(\mathscr{l}\)}1-norm {SVM} algorithm for data integration in biological applications}, booktitle = {2017 American Control Conference, {ACC} 2017, Seattle, WA, USA, May 24-26, 2017}, pages = {3753--3757}, publisher = {{IEEE}}, year = {2017}, url = {https://doi.org/10.23919/ACC.2017.7963529}, doi = {10.23919/ACC.2017.7963529}, timestamp = {Fri, 03 Dec 2021 13:04:31 +0100}, biburl = {https://dblp.org/rec/conf/amcc/AchantaMV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/amia/MayoCTJSDH17, author = {Kelsey R. Mayo and Robert J. Carroll and Jason Tan and Rebecca Johnston and Celecia M. Scott and Joshua C. Denny and Paul A. Harris}, title = {HealthPro: An integrated web application for essential health data and biological specimen collection in the Precision Medicine Initiative}, booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium, Washington, DC, USA, November 4-8, 2017}, publisher = {{AMIA}}, year = {2017}, url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2731734-1.4257854/2731896-1.4257851}, timestamp = {Wed, 17 Apr 2024 11:47:24 +0200}, biburl = {https://dblp.org/rec/conf/amia/MayoCTJSDH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/apweb/LiuWX17, author = {Yuan Liu and Xin Wang and Qiang Xu}, editor = {Lei Chen and Christian S. Jensen and Cyrus Shahabi and Xiaochun Yang and Xiang Lian}, title = {BioPW: An Interactive Tool for Biological Pathway Visualization on Linked Data}, booktitle = {Web and Big Data - First International Joint Conference, APWeb-WAIM 2017, Beijing, China, July 7-9, 2017, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {10367}, pages = {333--336}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-63564-4\_30}, doi = {10.1007/978-3-319-63564-4\_30}, timestamp = {Tue, 14 May 2019 10:00:51 +0200}, biburl = {https://dblp.org/rec/conf/apweb/LiuWX17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/Jamil17, author = {Hasan M. Jamil}, editor = {Nurit Haspel and Lenore J. Cowen and Amarda Shehu and Tamer Kahveci and Giuseppe Pozzi}, title = {Knowledge Rich Natural Language Queries over Structured Biological Databases}, booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics, Computational Biology, and Health Informatics, {BCB} 2017, Boston, MA, USA, August 20-23, 2017}, pages = {352--361}, publisher = {{ACM}}, year = {2017}, url = {https://doi.org/10.1145/3107411.3107442}, doi = {10.1145/3107411.3107442}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bcb/Jamil17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/CaiMR17, author = {Xingyu Cai and Abdullah{-}Al Mamun and Sanguthevar Rajasekaran}, editor = {Xiaohua Hu and Chi{-}Ren Shyu and Yana Bromberg and Jean Gao and Yang Gong and Dmitry Korkin and Illhoi Yoo and Huiru Jane Zheng}, title = {Novel algorithms for finding the closest l-mers in biological data}, booktitle = {2017 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2017, Kansas City, MO, USA, November 13-16, 2017}, pages = {525--528}, publisher = {{IEEE} Computer Society}, year = {2017}, url = {https://doi.org/10.1109/BIBM.2017.8217702}, doi = {10.1109/BIBM.2017.8217702}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/CaiMR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/HuffC17, author = {Grogan W. Huff and Kathryn M. Cooper}, editor = {Xiaohua Hu and Chi{-}Ren Shyu and Yana Bromberg and Jean Gao and Yang Gong and Dmitry Korkin and Illhoi Yoo and Huiru Jane Zheng}, title = {Correlation networks: Biologically driven relationships from gene expression data}, booktitle = {2017 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2017, Kansas City, MO, USA, November 13-16, 2017}, pages = {1712--1715}, publisher = {{IEEE} Computer Society}, year = {2017}, url = {https://doi.org/10.1109/BIBM.2017.8217918}, doi = {10.1109/BIBM.2017.8217918}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/HuffC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdata/LiSLLWWS17, author = {Liang Li and Zhihong Shen and Jianhui Li and Dongjiang Liu and Huajin Wang and Lipeng Wang and Qinglan Sun}, editor = {George Karypis and Jia Zhang}, title = {A Resilient Index Graph for Querying Large Biological Scientific Data}, booktitle = {2017 {IEEE} International Congress on Big Data, BigData Congress 2017, Honolulu, HI, USA, June 25-30, 2017}, pages = {435--443}, publisher = {{IEEE} Computer Society}, year = {2017}, url = {https://doi.org/10.1109/BigDataCongress.2017.64}, doi = {10.1109/BIGDATACONGRESS.2017.64}, timestamp = {Wed, 16 Oct 2019 14:14:55 +0200}, biburl = {https://dblp.org/rec/conf/bigdata/LiSLLWWS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biostec/NeelyA17, author = {Benjamin A. Neely and Paul E. Anderson}, editor = {Hesham H. Ali and Ana L. N. Fred and Hugo Gamboa and M{\'{a}}rio Vaz}, title = {Complementary Domain Prioritization: {A} Method to Improve Biologically Relevant Detection in Multi-Omic Data Sets}, booktitle = {Proceedings of the 10th International Joint Conference on Biomedical Engineering Systems and Technologies {(BIOSTEC} 2017) - Volume 3: BIOINFORMATICS, Porto, Portugal, February 21-23, 2017}, pages = {68--80}, publisher = {SciTePress}, year = {2017}, url = {https://doi.org/10.5220/0006151500680080}, doi = {10.5220/0006151500680080}, timestamp = {Tue, 25 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/biostec/NeelyA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ccta/AchantaMV17, author = {Hema Kumari Achanta and Burook Misganaw and M. Vidyasagar}, title = {Integrating biological data across multiple platforms using importance-weighted transfer learning and applications to breast cancer data sets}, booktitle = {{IEEE} Conference on Control Technology and Applications, {CCTA} 2017, Mauna Lani Resort, HI, USA, August 27-30, 2017}, pages = {955--960}, publisher = {{IEEE}}, year = {2017}, url = {https://doi.org/10.1109/CCTA.2017.8062583}, doi = {10.1109/CCTA.2017.8062583}, timestamp = {Wed, 16 Oct 2019 14:14:57 +0200}, biburl = {https://dblp.org/rec/conf/ccta/AchantaMV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibb/FioriniTSB17, author = {Samuele Fiorini and Federico Tomasi and Margherita Squillario and Annalisa Barla}, editor = {Massimo Bartoletti and Annalisa Barla and Andrea Bracciali and Gunnar W. Klau and Leif E. Peterson and Alberto Policriti and Roberto Tagliaferri}, title = {Adenine: {A} HPC-Oriented Tool for Biological Data Exploration}, booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics - 14th International Meeting, {CIBB} 2017, Cagliari, Italy, September 7-9, 2017, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {10834}, pages = {51--59}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-030-14160-8\_6}, doi = {10.1007/978-3-030-14160-8\_6}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cibb/FioriniTSB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dexaw/BalderasBHG17, author = {Eva C. Serrano Balderas and Laure Berti{-}{\'{E}}quille and Maria Aurora Armienta Hernandez and Corinne Grac}, title = {Principled Data Preprocessing: Application to Biological Aquatic Indicators of Water Pollution}, booktitle = {28th International Workshop on Database and Expert Systems Applications, {DEXA} 2017 Workshops, Lyon, France, August 28-31, 2017}, pages = {52--56}, publisher = {{IEEE} Computer Society}, year = {2017}, url = {https://doi.org/10.1109/DEXA.2017.27}, doi = {10.1109/DEXA.2017.27}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/dexaw/BalderasBHG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/BrusseauBMFNB17, author = {Elisabeth Brusseau and Adeline Bernard and Cyril Meynier and Guillaume F{\'{e}}rin and An Nguyen{-}Dinh and Olivier Basset}, title = {Radiofrequency ultrasound data acquisition with a 640-element array transducer for strain imaging: Experimental results with phantoms and biological tissue samples}, booktitle = {2017 39th Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society (EMBC), Jeju Island, South Korea, July 11-15, 2017}, pages = {2996--2999}, publisher = {{IEEE}}, year = {2017}, url = {https://doi.org/10.1109/EMBC.2017.8037487}, doi = {10.1109/EMBC.2017.8037487}, timestamp = {Fri, 12 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/embc/BrusseauBMFNB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/esws/LofflerOKFSKMD17, author = {Felicitas L{\"{o}}ffler and Kobkaew Opasjumruskit and Naouel Karam and David Fichtm{\"{u}}ller and Uwe Schindler and Friederike Klan and Claudia M{\"{u}}ller{-}Birn and Michael Diepenbroek}, editor = {Eva Blomqvist and Katja Hose and Heiko Paulheim and Agnieszka Lawrynowicz and Fabio Ciravegna and Olaf Hartig}, title = {Honey Bee Versus Apis Mellifera: {A} Semantic Search for Biological Data}, booktitle = {The Semantic Web: {ESWC} 2017 Satellite Events - {ESWC} 2017 Satellite Events, Portoro{\v{z}}, Slovenia, May 28 - June 1, 2017, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {10577}, pages = {98--103}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-70407-4\_19}, doi = {10.1007/978-3-319-70407-4\_19}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/esws/LofflerOKFSKMD17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eva/Stadon17, author = {Julian Stadon}, editor = {Jonathan P. Bowen and Graham Diprose and Nick Lambert}, title = {Data Body Trader: Identity Augmentation and Post-Biological Organ Trade}, booktitle = {Electronic Visualisation and the Arts, {EVA} 2017, London, UK, July 11-13, 2017}, series = {Workshops in Computing}, publisher = {{BCS}}, year = {2017}, url = {https://doi.org/10.14236/ewic/EVA2017.45}, doi = {10.14236/EWIC/EVA2017.45}, timestamp = {Fri, 27 Aug 2021 10:57:08 +0200}, biburl = {https://dblp.org/rec/conf/eva/Stadon17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/evoW/BaronLB17, author = {Simon Baron and Nicola Lazzarini and Jaume Bacardit}, editor = {Giovanni Squillero and Kevin Sim}, title = {Characterising the Influence of Rule-Based Knowledge Representations in Biological Knowledge Extraction from Transcriptomics Data}, booktitle = {Applications of Evolutionary Computation - 20th European Conference, EvoApplications 2017, Amsterdam, The Netherlands, April 19-21, 2017, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {10199}, pages = {125--141}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-55849-3\_9}, doi = {10.1007/978-3-319-55849-3\_9}, timestamp = {Tue, 14 May 2019 10:00:37 +0200}, biburl = {https://dblp.org/rec/conf/evoW/BaronLB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ijcai/0001ZWZV17, author = {Qingyu Chen and Xiuzhen Zhang and Yu Wan and Justin Zobel and Karin Verspoor}, editor = {Wajdi Dhifli and Abdoulaye Banir{\'{e}} Diallo and Engelbert Mephu Nguifo and Mohammed Javeed Zaki}, title = {Sequence Clustering Methods and Completeness of Biological Database Search}, booktitle = {Proceedings of the Workshop on Advances in Bioinformatics and Artificial Intelligence: Bridging the Gap co-located with 26th International Joint Conference on Artificial Intelligence {(IJCAI} 2017), Melbourne, Australia, August 20, 2017}, series = {{CEUR} Workshop Proceedings}, volume = {1942}, pages = {8--14}, publisher = {CEUR-WS.org}, year = {2017}, url = {https://ceur-ws.org/Vol-1942/paper1.pdf}, timestamp = {Fri, 17 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ijcai/0001ZWZV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/FiannacaPRMRSU17, author = {Antonino Fiannaca and Laura La Paglia and Massimo La Rosa and Antonio Messina and Riccardo Rizzo and Dario Stabile and Alfonso Urso}, editor = {Ignacio Rojas and Francisco M. Ortu{\~{n}}o Guzman}, title = {Gremlin Language for Querying the BiographDB Integrated Biological Database}, booktitle = {Bioinformatics and Biomedical Engineering - 5th International Work-Conference, {IWBBIO} 2017, Granada, Spain, April 26-28, 2017, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {10208}, pages = {303--313}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-56148-6\_26}, doi = {10.1007/978-3-319-56148-6\_26}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iwbbio/FiannacaPRMRSU17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwcia/JimenezRVGE17, author = {Mar{\'{\i}}a Jos{\'{e}} Jim{\'{e}}nez and Matteo Rucco and Pablo Vicente{-}Munuera and Pedro G{\'{o}}mez{-}G{\'{a}}lvez and Luis M. Escudero}, editor = {Valentin E. Brimkov and Reneta P. Barneva}, title = {Topological Data Analysis for Self-organization of Biological Tissues}, booktitle = {Combinatorial Image Analysis - 18th International Workshop, {IWCIA} 2017, Plovdiv, Bulgaria, June 19-21, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10256}, pages = {229--242}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-59108-7\_18}, doi = {10.1007/978-3-319-59108-7\_18}, timestamp = {Wed, 15 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iwcia/JimenezRVGE17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/jist/KumeMMSKK17, author = {Satoshi Kume and Hiroshi Masuya and Mitsuyo Maeda and Mitsuo Suga and Yosky Kataoka and Norio Kobayashi}, editor = {Zhe Wang and Anni{-}Yasmin Turhan and Kewen Wang and Xiaowang Zhang}, title = {Development of Semantic Web-Based Imaging Database for Biological Morphome}, booktitle = {Semantic Technology - 7th Joint International Conference, {JIST} 2017, Gold Coast, QLD, Australia, November 10-12, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10675}, pages = {277--285}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-70682-5\_19}, doi = {10.1007/978-3-319-70682-5\_19}, timestamp = {Wed, 27 Jul 2022 08:20:14 +0200}, biburl = {https://dblp.org/rec/conf/jist/KumeMMSKK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/jowo/ZarateBF17, author = {Marcos Daniel Z{\'{a}}rate and Agustina Buccella and Pablo R. Fillottrani}, editor = {Stefano Borgo and Oliver Kutz and Frank Loebe and Fabian Neuhaus and Kemo Adrian and Mihailo Antovic and Valerio Basile and Martin Boeker and Diego Calvanese and Tommaso Caselli and Giorgio Colombo and Roberto Confalonieri and Laura Daniele and J{\'{e}}r{\^{o}}me Euzenat and Antony Galton and Dagmar Gromann and Maria M. Hedblom and Heinrich Herre and Inge Hinterwaldner and Andrea Janes and Ludger Jansen and Kris Krois and Antonio Lieto and Claudio Masolo and Rafael Pe{\~{n}}aloza and Daniele Porello and Daniele Paolo Radicioni and Emilio M. Sanfilippo and Daniel Schober and Rossella Stufano and Amanda Vizedom}, title = {BioOnto: Towards an Integration of Biological and Biogeographic Data}, booktitle = {Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, Bozen-Bolzano, Italy, September 21-23, 2017}, series = {{CEUR} Workshop Proceedings}, volume = {2050}, publisher = {CEUR-WS.org}, year = {2017}, url = {https://ceur-ws.org/Vol-2050/ODLS\_paper\_6.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:57 +0100}, biburl = {https://dblp.org/rec/conf/jowo/ZarateBF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pacbb/ZylaMP17, author = {Joanna Zyla and Michal Marczyk and Joanna Polanska}, editor = {Florentino Fdez{-}Riverola and Mohd Saberi Mohamad and Miguel P. Rocha and Juan F. De Paz and Tiago Pinto}, title = {Reproducibility of Finding Enriched Gene Sets in Biological Data Analysis}, booktitle = {11th International Conference on Practical Applications of Computational Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23 June, 2017}, series = {Advances in Intelligent Systems and Computing}, volume = {616}, pages = {146--154}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-60816-7\_18}, doi = {10.1007/978-3-319-60816-7\_18}, timestamp = {Wed, 12 Oct 2022 08:58:54 +0200}, biburl = {https://dblp.org/rec/conf/pacbb/ZylaMP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ppdp/AngelopoulosW17, author = {Nicos Angelopoulos and Jan Wielemaker}, editor = {Wim Vanhoof and Brigitte Pientka}, title = {Accessing biological data as Prolog facts}, booktitle = {Proceedings of the 19th International Symposium on Principles and Practice of Declarative Programming, Namur, Belgium, October 09 - 11, 2017}, pages = {29--38}, publisher = {{ACM}}, year = {2017}, url = {https://doi.org/10.1145/3131851.3131857}, doi = {10.1145/3131851.3131857}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ppdp/AngelopoulosW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sigmod/LianK17, author = {Xiang Lian and Dongchul Kim}, editor = {Semih Salihoglu and Wenchao Zhou and Rada Chirkova and Jun Yang and Dan Suciu}, title = {Efficient Ad-Hoc Graph Inference and Matching in Biological Databases}, booktitle = {Proceedings of the 2017 {ACM} International Conference on Management of Data, {SIGMOD} Conference 2017, Chicago, IL, USA, May 14-19, 2017}, pages = {359--373}, publisher = {{ACM}}, year = {2017}, url = {https://doi.org/10.1145/3035918.3035929}, doi = {10.1145/3035918.3035929}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/sigmod/LianK17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swat4ls/MillerSKMSEW17, author = {Ryan A. Miller and Denise N. Slenter and Martina Kutmon and Jonathan M{\'{e}}lius and Georg Summer and Chris T. A. Evelo and Egon L. Willighagen}, editor = {Adrian Paschke and Albert Burger and Andrea Splendiani and M. Scott Marshall and Paolo Romano and Valentina Presutti}, title = {Visualizing Metabolomics Data in Directed Biological Networks}, booktitle = {Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences {(SWAT4LS} 2017), Rome, Italy, December 4-7, 2017}, series = {{CEUR} Workshop Proceedings}, volume = {2042}, publisher = {CEUR-WS.org}, year = {2017}, url = {https://ceur-ws.org/Vol-2042/paper37.pdf}, timestamp = {Fri, 10 Mar 2023 16:23:02 +0100}, biburl = {https://dblp.org/rec/conf/swat4ls/MillerSKMSEW17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/vissym/KerrenKLS17, author = {Andreas Kerren and Kostiantyn Kucher and Yuan{-}Fang Li and Falk Schreiber}, editor = {Anna Puig and Tobias Isenberg}, title = {MDS-based Visual Survey of Biological Data Visualization Techniques}, booktitle = {19th Eurographics Conference on Visualization, EuroVis 2017 - Posters, Barcelona, Spain, June 12-16, 2017}, pages = {85--87}, publisher = {Eurographics Association}, year = {2017}, url = {https://doi.org/10.2312/eurp.20171175}, doi = {10.2312/EURP.20171175}, timestamp = {Wed, 01 Jul 2020 13:35:20 +0200}, biburl = {https://dblp.org/rec/conf/vissym/KerrenKLS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/gis/X17cw, editor = {Shashi Shekhar and Hui Xiong and Xun Zhou}, title = {Biological Data Mining}, booktitle = {Encyclopedia of {GIS}}, pages = {127}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-17885-1\_100105}, doi = {10.1007/978-3-319-17885-1\_100105}, timestamp = {Fri, 03 Apr 2020 17:07:19 +0200}, biburl = {https://dblp.org/rec/reference/gis/X17cw.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/ml/Gerstner17, author = {Wulfram Gerstner}, editor = {Claude Sammut and Geoffrey I. Webb}, title = {Biological Learning: Synaptic Plasticity, Hebb Rule and Spike Timing Dependent Plasticity}, booktitle = {Encyclopedia of Machine Learning and Data Mining}, pages = {140--143}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-1-4899-7687-1\_80}, doi = {10.1007/978-1-4899-7687-1\_80}, timestamp = {Wed, 12 Jul 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/reference/ml/Gerstner17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/ml/NobleL17, author = {William Stafford Noble and Christina S. Leslie}, editor = {Claude Sammut and Geoffrey I. Webb}, title = {Learning Models of Biological Sequences}, booktitle = {Encyclopedia of Machine Learning and Data Mining}, pages = {723--729}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-1-4899-7687-1\_468}, doi = {10.1007/978-1-4899-7687-1\_468}, timestamp = {Wed, 12 Jul 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/reference/ml/NobleL17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/Jamil17, author = {Hasan M. Jamil}, title = {Knowledge Rich Natural Language Queries over Structured Biological Databases}, journal = {CoRR}, volume = {abs/1703.10692}, year = {2017}, url = {http://arxiv.org/abs/1703.10692}, eprinttype = {arXiv}, eprint = {1703.10692}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/Jamil17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/PerrinDGcDHPDDG17, author = {Helene Perrin and Marion Denorme and Julien Grosjean and OMICtools community and Emeric Dynomant and Vincent J. Henry and Fabien Pichon and St{\'{e}}fan Jacques Darmoni and Arnaud Desfeux and Bruno J. Gonzalez}, title = {OMICtools: a community-driven search engine for biological data analysis}, journal = {CoRR}, volume = {abs/1707.03659}, year = {2017}, url = {http://arxiv.org/abs/1707.03659}, eprinttype = {arXiv}, eprint = {1707.03659}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/PerrinDGcDHPDDG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1711-03985, author = {Mufti Mahmud and M. Shamim Kaiser and Amir Hussain and Stefano Vassanelli}, title = {Applications of Deep Learning and Reinforcement Learning to Biological Data}, journal = {CoRR}, volume = {abs/1711.03985}, year = {2017}, url = {http://arxiv.org/abs/1711.03985}, eprinttype = {arXiv}, eprint = {1711.03985}, timestamp = {Tue, 25 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1711-03985.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Hagen16, author = {Matthew Hagen}, title = {Biological and clinical data integration and its applications in healthcare}, school = {Georgia Institute of Technology, Atlanta, GA, {USA}}, year = {2016}, url = {https://hdl.handle.net/1853/54267}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Hagen16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Soufan16, author = {Othman Soufan}, title = {Novel Data Mining Methods for Virtual Screening of Biological Active Chemical Compounds}, school = {King Abdullah University of Science and Technology, Thuwal, Saudi Arabia}, year = {2016}, url = {http://hdl.handle.net/10754/621873}, doi = {10.25781/KAUST-UY8Y6}, timestamp = {Fri, 20 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Soufan16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/gr/Sfakianakis16, author = {Stelios Sfakianakis}, title = {Exploration of disease-specific biomarkers in cancer research by integrating biological knowledge and high throughput data}, school = {Technical University of Crete, Greece}, year = {2016}, url = {http://hdl.handle.net/10442/hedi/38642}, timestamp = {Wed, 17 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/gr/Sfakianakis16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/HenriquesM16a, author = {Rui Henriques and Sara C. Madeira}, title = {BiC2PAM: constraint-guided biclustering for biological data analysis with domain knowledge}, journal = {Algorithms Mol. Biol.}, volume = {11}, pages = {23}, year = {2016}, url = {https://doi.org/10.1186/s13015-016-0085-5}, doi = {10.1186/S13015-016-0085-5}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/HenriquesM16a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/DenaxasAM16, author = {Spiros C. Denaxas and Folkert W. Asselbergs and Jason H. Moore}, title = {The tip of the iceberg: challenges of accessing hospital electronic health record data for biological data mining}, journal = {BioData Min.}, volume = {9}, pages = {29}, year = {2016}, url = {https://doi.org/10.1186/s13040-016-0109-1}, doi = {10.1186/S13040-016-0109-1}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/DenaxasAM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/LynchM16, author = {Shannon M. Lynch and Jason H. Moore}, title = {A call for biological data mining approaches in epidemiology}, journal = {BioData Min.}, volume = {9}, pages = {1}, year = {2016}, url = {https://doi.org/10.1186/s13040-015-0079-8}, doi = {10.1186/S13040-015-0079-8}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/LynchM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/ChoiLBZV16, author = {Miji Choi and Haibin Liu and William A. Baumgartner Jr. and Justin Zobel and Karin Verspoor}, title = {Coreference resolution improves extraction of Biological Expression Language statements from texts}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw076}, doi = {10.1093/DATABASE/BAW076}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodb/ChoiLBZV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/FluckMAKKRCHSHP16, author = {Juliane Fluck and Sumit Madan and Sam Ansari and Alpha Tom Kodamullil and Reagon Karki and Majid Rastegar{-}Mojarad and Natalie L. Catlett and William Hayes and Justyna Szostak and Julia Hoeng and Manuel C. Peitsch}, title = {Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language {(BEL)}}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw113}, doi = {10.1093/DATABASE/BAW113}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/FluckMAKKRCHSHP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/LaiLHHT16, author = {Po{-}Ting Lai and Yu{-}Yan Lo and Ming{-}Siang Huang and Yu{-}Cheng Hsiao and Richard Tzong{-}Han Tsai}, title = {BelSmile: a biomedical semantic role labeling approach for extracting biological expression language from text}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw064}, doi = {10.1093/DATABASE/BAW064}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/LaiLHHT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/RinaldiEMCLMF16, author = {Fabio Rinaldi and Tilia Renate Ellendorff and Sumit Madan and Simon Clematide and Adrian Van der Lek and Heinz{-}Theodor Mevissen and Juliane Fluck}, title = {BioCreative {V} track 4: a shared task for the extraction of causal network information using the Biological Expression Language}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw067}, doi = {10.1093/DATABASE/BAW067}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/RinaldiEMCLMF16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CuiCLFLHYZC16, author = {Ya Cui and Xiaowei Chen and Huaxia Luo and Zhen Fan and Jianjun Luo and Shunmin He and Haiyan Yue and Peng Zhang and Runsheng Chen}, title = {BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications}, journal = {Bioinform.}, volume = {32}, number = {11}, pages = {1740--1742}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw041}, doi = {10.1093/BIOINFORMATICS/BTW041}, timestamp = {Fri, 19 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CuiCLFLHYZC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CuiMZCH16, author = {Xiaodong Cui and Jia Meng and Shaowu Zhang and Yidong Chen and Yufei Huang}, title = {A novel algorithm for calling mRNA m\({}^{\mbox{6}}\)A peaks by modeling biological variances in MeRIP-seq data}, journal = {Bioinform.}, volume = {32}, number = {12}, pages = {378--385}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw281}, doi = {10.1093/BIOINFORMATICS/BTW281}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CuiMZCH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DadaevLSEK16, author = {Tokhir Dadaev and Daniel A. Leongamornlert and Edward J. Saunders and Rosalind A. Eeles and Zsofia Kote{-}Jarai}, title = {LocusExplorer: a user-friendly tool for integrated visualization of human genetic association data and biological annotations}, journal = {Bioinform.}, volume = {32}, number = {6}, pages = {949--951}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btv690}, doi = {10.1093/BIOINFORMATICS/BTV690}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DadaevLSEK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DaoFHLSC16, author = {David Dao and Adam Fraser and Jane Hung and Vebjorn Ljosa and Shantanu Singh and Anne E. Carpenter}, title = {CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets}, journal = {Bioinform.}, volume = {32}, number = {20}, pages = {3210--3212}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw390}, doi = {10.1093/BIOINFORMATICS/BTW390}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DaoFHLSC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DingSC16, author = {Jiarui Ding and Sohrab P. Shah and Anne Condon}, title = {densityCut: an efficient and versatile topological approach for automatic clustering of biological data}, journal = {Bioinform.}, volume = {32}, number = {17}, pages = {2567--2576}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw227}, doi = {10.1093/BIOINFORMATICS/BTW227}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DingSC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HayakawaFM16, author = {Eisuke Hayakawa and Yoshinori Fujimura and Daisuke Miura}, title = {MSIdV: a versatile tool to visualize biological indices from mass spectrometry imaging data}, journal = {Bioinform.}, volume = {32}, number = {24}, pages = {3852--3854}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw548}, doi = {10.1093/BIOINFORMATICS/BTW548}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HayakawaFM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ThabenW16, author = {Paul Florian Thaben and P{\aa}l O. Westermark}, title = {Differential rhythmicity: detecting altered rhythmicity in biological data}, journal = {Bioinform.}, volume = {32}, number = {18}, pages = {2800--2808}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw309}, doi = {10.1093/BIOINFORMATICS/BTW309}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ThabenW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TohsatoHKO16, author = {Yukako Tohsato and Kenneth H. L. Ho and Koji Kyoda and Shuichi Onami}, title = {{SSBD:} a database of quantitative data of spatiotemporal dynamics of biological phenomena}, journal = {Bioinform.}, volume = {32}, number = {22}, pages = {3471--3479}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw417}, doi = {10.1093/BIOINFORMATICS/BTW417}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TohsatoHKO16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YangPGR16, author = {Jing Yang and Christopher A. Penfold and Murray R. Grant and Magnus Rattray}, title = {Inferring the perturbation time from biological time course data}, journal = {Bioinform.}, volume = {32}, number = {19}, pages = {2956--2964}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw329}, doi = {10.1093/BIOINFORMATICS/BTW329}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YangPGR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BaiDBBRJWJS16, author = {Yongsheng Bai and Lizhong Ding and Steve Baker and Jenny M. Bai and Ethan Rath and Feng Jiang and Jianghong Wu and Hui Jiang and Gary W. Stuart}, title = {Dissecting the biological relationship between {TCGA} miRNA and mRNA sequencing data using \emph{MMiRNA-Viewer}}, journal = {{BMC} Bioinform.}, volume = {17}, number = {{S-13}}, pages = {336}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1219-y}, doi = {10.1186/S12859-016-1219-Y}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BaiDBBRJWJS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CaoCDLP16, author = {Xueyuan Cao and Kristine R. Crews and James R. Downing and Jatinder Lamba and Stanley Pounds}, title = {{CC-PROMISE} effectively integrates two forms of molecular data with multiple biologically related endpoints}, journal = {{BMC} Bioinform.}, volume = {17}, number = {{S-13}}, pages = {382}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1217-0}, doi = {10.1186/S12859-016-1217-0}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CaoCDLP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JaffeHKWCMLC16, author = {Andrew E. Jaffe and Thomas Hyde and Joel Kleinman and Daniel R. Weinberger and Joshua Chenoweth and Ronald McKay and Jeffrey T. Leek and Carlo Colantuoni}, title = {Erratum to: Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis}, journal = {{BMC} Bioinform.}, volume = {17}, pages = {302}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1152-0}, doi = {10.1186/S12859-016-1152-0}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JaffeHKWCMLC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/LeeJLKK16, author = {Jusang Lee and Kyuri Jo and Sunwon Lee and Jaewoo Kang and Sun Kim}, title = {Prioritizing biological pathways by recognizing context in time-series gene expression data}, journal = {{BMC} Bioinform.}, volume = {17}, number = {{S-17}}, pages = {257--268}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1335-8}, doi = {10.1186/S12859-016-1335-8}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/LeeJLKK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ToureMWBSHPA16, author = {Vasundra Tour{\'{e}} and Alexander Mazein and Dagmar Waltemath and Irina Balaur and Mansoor A. S. Saqi and Ron Henkel and Johann Pellet and Charles Auffray}, title = {{STON:} exploring biological pathways using the {SBGN} standard and graph databases}, journal = {{BMC} Bioinform.}, volume = {17}, pages = {494:1--494:9}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1394-x}, doi = {10.1186/S12859-016-1394-X}, timestamp = {Tue, 21 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ToureMWBSHPA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VinciottiWJGPBH16, author = {Veronica Vinciotti and Ernst C. Wit and Rick Jansen and Eco J. C. de Geus and Brenda W. J. H. Penninx and Dorret I. Boomsma and Peter A. C. 't Hoen}, title = {Consistency of biological networks inferred from microarray and sequencing data}, journal = {{BMC} Bioinform.}, volume = {17}, pages = {254}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1136-0}, doi = {10.1186/S12859-016-1136-0}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/VinciottiWJGPBH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/BuddenC16, author = {David M. Budden and Edmund J. Crampin}, title = {Information theoretic approaches for inference of biological networks from continuous-valued data}, journal = {{BMC} Syst. Biol.}, volume = {10}, pages = {89}, year = {2016}, url = {https://doi.org/10.1186/s12918-016-0331-y}, doi = {10.1186/S12918-016-0331-Y}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/BuddenC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmmm/MahapatraAKP16, author = {Dwarikanath Mahapatra and Krishna Agarwal and Reza Khosrowabadi and Dilip K. Prasad}, title = {Recent Advances in Statistical Data and Signal Analysis: Application to Real World Diagnostics from Medical and Biological Signals}, journal = {Comput. Math. Methods Medicine}, volume = {2016}, pages = {1643687:1}, year = {2016}, url = {https://doi.org/10.1155/2016/1643687}, doi = {10.1155/2016/1643687}, timestamp = {Sat, 25 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cmmm/MahapatraAKP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmpb/HanifHSRBI16, author = {Madiha Hanif and Abdul Hafeez and Yusuf Suleman and M. Mustafa Rafique and Ali Raza Butt and Samir M. Iqbal}, title = {An accelerated framework for the classification of biological targets from solid-state micropore data}, journal = {Comput. Methods Programs Biomed.}, volume = {134}, pages = {53--67}, year = {2016}, url = {https://doi.org/10.1016/j.cmpb.2016.06.001}, doi = {10.1016/J.CMPB.2016.06.001}, timestamp = {Sat, 05 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cmpb/HanifHSRBI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/csda/HasegawaNMSYMAI16, author = {Takanori Hasegawa and Atsushi Niida and Tomoya Mori and Teppei Shimamura and Rui Yamaguchi and Satoru Miyano and Tatsuya Akutsu and Seiya Imoto}, title = {A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models}, journal = {Comput. Stat. Data Anal.}, volume = {94}, pages = {63--74}, year = {2016}, url = {https://doi.org/10.1016/j.csda.2015.08.003}, doi = {10.1016/J.CSDA.2015.08.003}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/csda/HasegawaNMSYMAI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ejes/WangD16, author = {Haichao Wang and Zeng Dong}, title = {Big data services drive mobile crowd embedded opportunistic control mechanism for biological engineering}, journal = {{EURASIP} J. Embed. Syst.}, volume = {2016}, pages = {13}, year = {2016}, url = {https://doi.org/10.1186/s13639-016-0034-x}, doi = {10.1186/S13639-016-0034-X}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ejes/WangD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/eswa/FaridMMN16, author = {Dewan Md. Farid and M. Abdulla Al Mamun and Bernard Manderick and Ann Now{\'{e}}}, title = {An adaptive rule-based classifier for mining big biological data}, journal = {Expert Syst. Appl.}, volume = {64}, pages = {305--316}, year = {2016}, url = {https://doi.org/10.1016/j.eswa.2016.08.008}, doi = {10.1016/J.ESWA.2016.08.008}, timestamp = {Fri, 26 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/eswa/FaridMMN16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/ZhangDZZYQF16, author = {Qian Zhang and Nan Ding and Lu Zhang and Xuetong Zhao and Yadong Yang and Hongzhu Qu and Xiangdong Fang}, title = {Biological Databases for Hematology Research}, journal = {Genom. Proteom. Bioinform.}, volume = {14}, number = {6}, pages = {333--337}, year = {2016}, url = {https://doi.org/10.1016/j.gpb.2016.10.004}, doi = {10.1016/J.GPB.2016.10.004}, timestamp = {Wed, 21 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/gpb/ZhangDZZYQF16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijbidm/GopalanD16, author = {Sindhuja Gopalan and Sobha Lalitha Devi}, title = {BNEMiner: mining biomedical literature for extraction of biological target, disease and chemical entities}, journal = {Int. J. Bus. Intell. Data Min.}, volume = {11}, number = {2}, pages = {190--204}, year = {2016}, url = {https://doi.org/10.1504/IJBIDM.2016.10002434}, doi = {10.1504/IJBIDM.2016.10002434}, timestamp = {Thu, 30 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijbidm/GopalanD16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/WangZLX16, author = {Xi Wang and Peiyan Zhu and Tao Liu and Ke Xu}, title = {BioTopic: a topic-driven biological literature mining system}, journal = {Int. J. Data Min. Bioinform.}, volume = {14}, number = {4}, pages = {373--386}, year = {2016}, url = {https://doi.org/10.1504/IJDMB.2016.075822}, doi = {10.1504/IJDMB.2016.075822}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/WangZLX16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/information/HosseiniPP16, author = {Seyed Morteza Hosseini and Diogo Pratas and Armando J. Pinho}, title = {A Survey on Data Compression Methods for Biological Sequences}, journal = {Inf.}, volume = {7}, number = {4}, pages = {56}, year = {2016}, url = {https://doi.org/10.3390/info7040056}, doi = {10.3390/INFO7040056}, timestamp = {Thu, 09 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/information/HosseiniPP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/LiZJZBTYSHC16, author = {Qilin Li and Yincong Zhou and Yingmin Jiao and Zhao Zhang and Lin Bai and Li Tong and Xiong Yang and Bj{\"{o}}rn Sommer and Ralf Hofest{\"{a}}dt and Ming Chen}, title = {DaTo: an atlas of biological databases and tools}, journal = {J. Integr. Bioinform.}, volume = {13}, number = {4}, year = {2016}, url = {https://doi.org/10.2390/biecoll-jib-2016-297}, doi = {10.2390/BIECOLL-JIB-2016-297}, timestamp = {Wed, 08 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jib/LiZJZBTYSHC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/Rottger16, author = {Richard R{\"{o}}ttger}, title = {Clustering of Biological Datasets in the Era of Big Data}, journal = {J. Integr. Bioinform.}, volume = {13}, number = {1}, year = {2016}, url = {https://doi.org/10.2390/biecoll-jib-2016-300}, doi = {10.2390/BIECOLL-JIB-2016-300}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/Rottger16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jis/KimB16, author = {Youngseek Kim and Christopher Sean Burns}, title = {Norms of data sharing in biological sciences: The roles of metadata, data repository, and journal and funding requirements}, journal = {J. Inf. Sci.}, volume = {42}, number = {2}, pages = {230--245}, year = {2016}, url = {https://doi.org/10.1177/0165551515592098}, doi = {10.1177/0165551515592098}, timestamp = {Thu, 28 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jis/KimB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PerfettoBCPILLM16, author = {Livia Perfetto and Leonardo Briganti and Alberto Calderone and Andrea Cerquone Perpetuini and Marta Iannuccelli and Francesca Langone and Luana Licata and Milica Marinkovic and Anna Mattioni and Theodora Pavlidou and Daniele Peluso and Lucia Lisa Petrilli and Stefano Pirr{\`{o}} and Daniela Posca and Elena Santonico and Alessandra Silvestri and Filomena Spada and Luisa Castagnoli and Gianni Cesareni}, title = {{SIGNOR:} a database of causal relationships between biological entities}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Database-Issue}, pages = {548--554}, year = {2016}, url = {https://doi.org/10.1093/nar/gkv1048}, doi = {10.1093/NAR/GKV1048}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PerfettoBCPILLM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ShenWLLLCSYGHHC16, author = {Qiancheng Shen and Guanqiao Wang and Shuai Li and Xinyi Liu and Shaoyong Lu and Zhongjie Chen and Kun Song and Junhao Yan and Lv Geng and Zhimin Huang and Wenkang Huang and Guoqiang Chen and Jian Zhang}, title = {{ASD} v3.0: unraveling allosteric regulation with structural mechanisms and biological networks}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Database-Issue}, pages = {527--535}, year = {2016}, url = {https://doi.org/10.1093/nar/gkv902}, doi = {10.1093/NAR/GKV902}, timestamp = {Fri, 12 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/ShenWLLLCSYGHHC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BagleySCBA16, author = {Steven C. Bagley and Marina Sirota and Richard O. Chen and Atul J. Butte and Russ B. Altman}, title = {Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants}, journal = {PLoS Comput. Biol.}, volume = {12}, number = {4}, year = {2016}, url = {https://doi.org/10.1371/journal.pcbi.1004885}, doi = {10.1371/JOURNAL.PCBI.1004885}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/BagleySCBA16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/HelmyCB16, author = {Mohamed Helmy and Alexander Crits{-}Christoph and Gary D. Bader}, title = {Ten Simple Rules for Developing Public Biological Databases}, journal = {PLoS Comput. Biol.}, volume = {12}, number = {11}, year = {2016}, url = {https://doi.org/10.1371/journal.pcbi.1005128}, doi = {10.1371/JOURNAL.PCBI.1005128}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/HelmyCB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PasolliTMWS16, author = {Edoardo Pasolli and Duy Tin Truong and Faizan Malik and Levi Waldron and Nicola Segata}, title = {Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights}, journal = {PLoS Comput. Biol.}, volume = {12}, number = {7}, year = {2016}, url = {https://doi.org/10.1371/journal.pcbi.1004977}, doi = {10.1371/JOURNAL.PCBI.1004977}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/PasolliTMWS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WaagmeesterKRMW16, author = {Andra Waagmeester and Martina Kutmon and Anders Riutta and Ryan A. Miller and Egon L. Willighagen and Chris T. A. Evelo and Alexander R. Pico}, title = {Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources}, journal = {PLoS Comput. Biol.}, volume = {12}, number = {6}, year = {2016}, url = {https://doi.org/10.1371/journal.pcbi.1004989}, doi = {10.1371/JOURNAL.PCBI.1004989}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/WaagmeesterKRMW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/rjour/DeveauBBZB16, author = {Paul Deveau and Emmanuel Barillot and Valentina Boeva and Andrei Yu. Zinovyev and Eric Bonnet}, title = {Calculating Biological Module Enrichment or Depletion and Visualizing Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages}, journal = {R J.}, volume = {8}, number = {2}, pages = {293}, year = {2016}, url = {https://doi.org/10.32614/rj-2016-047}, doi = {10.32614/RJ-2016-047}, timestamp = {Tue, 10 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/rjour/DeveauBBZB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/rjour/Wright16, author = {Erik Scott Wright}, title = {Using {DECIPHER} v2.0 to Analyze Big Biological Sequence Data in {R}}, journal = {R J.}, volume = {8}, number = {1}, pages = {352}, year = {2016}, url = {https://doi.org/10.32614/rj-2016-025}, doi = {10.32614/RJ-2016-025}, timestamp = {Wed, 20 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/rjour/Wright16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/GuzziM16, author = {Pietro Hiram Guzzi and Marco Mina}, title = {Guest Editorial for Special Section on Semantic-Based Approaches for Analysis of Biological Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {13}, number = {2}, pages = {196}, year = {2016}, url = {https://doi.org/10.1109/TCBB.2016.2535578}, doi = {10.1109/TCBB.2016.2535578}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/GuzziM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/MooreB16, author = {Erin J. Moore and Thirimachos Bourlai}, title = {Expectation Maximization of Frequent Patterns, a Specific, Local, Pattern-Based Biclustering Algorithm for Biological Datasets}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {13}, number = {5}, pages = {812--824}, year = {2016}, url = {https://doi.org/10.1109/TCBB.2015.2510011}, doi = {10.1109/TCBB.2015.2510011}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/MooreB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tjs/LiFMF16, author = {Jinyan Li and Simon Fong and Sabah Mohammed and Jinan Fiaidhi}, title = {Improving the classification performance of biological imbalanced datasets by swarm optimization algorithms}, journal = {J. Supercomput.}, volume = {72}, number = {10}, pages = {3708--3728}, year = {2016}, url = {https://doi.org/10.1007/s11227-015-1541-6}, doi = {10.1007/S11227-015-1541-6}, timestamp = {Tue, 27 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tjs/LiFMF16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/3dui/LagesALSB16, author = {Wallace Santos Lages and Gustavo A. Arango and David H. Laidlaw and John J. Socha and Doug A. Bowman}, editor = {Bruce H. Thomas and Rob Lindeman and Maud Marchal}, title = {Designing capsule, an input device to support the manipulation of biological datasets}, booktitle = {2016 {IEEE} Symposium on 3D User Interfaces, 3DUI 2016, Greenville, SC, USA, March 19-20, 2016}, pages = {255--256}, publisher = {{IEEE} Computer Society}, year = {2016}, url = {https://doi.org/10.1109/3DUI.2016.7460067}, doi = {10.1109/3DUI.2016.7460067}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/3dui/LagesALSB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/aaaiss/HaradaUKTKMT16, author = {Tomohiro Harada and Fumito Uwano and Takahiro Komine and Yusuke Tajima and Takahiro Kawashima and Morito Morishima and Keiki Takadama}, title = {Real-Time Sleep Stage Estimation from Biological Data with Trigonometric Function Regression Model}, booktitle = {2016 {AAAI} Spring Symposia, Stanford University, Palo Alto, California, USA, March 21-23, 2016}, publisher = {{AAAI} Press}, year = {2016}, url = {http://www.aaai.org/ocs/index.php/SSS/SSS16/paper/view/12740}, timestamp = {Wed, 14 Nov 2018 13:16:02 +0100}, biburl = {https://dblp.org/rec/conf/aaaiss/HaradaUKTKMT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/amcc/AchantaMV16, author = {Hema Kumari Achanta and Burook Misganaw and M. Vidyasagar}, title = {A transfer learning approach for integrating biological data across platforms}, booktitle = {2016 American Control Conference, {ACC} 2016, Boston, MA, USA, July 6-8, 2016}, pages = {6695--6697}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/ACC.2016.7526725}, doi = {10.1109/ACC.2016.7526725}, timestamp = {Wed, 16 Oct 2019 14:14:51 +0200}, biburl = {https://dblp.org/rec/conf/amcc/AchantaMV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/besc/LiYCS16, author = {Qian Li and Zhenglu Yang and Wei Cao and Kentaro Shimizu}, editor = {Gang Li and Yves Demazeau and Guandong Xu and Paul Wang and Leon S. L. Wang and Guanfeng Liu}, title = {An effective system for managing biological data}, booktitle = {2016 International Conference on Behavioral, Economic and Socio-cultural Computing, {BESC} 2016, Durham, NC, USA, November 11-13, 2016}, pages = {1--2}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/BESC.2016.7804492}, doi = {10.1109/BESC.2016.7804492}, timestamp = {Thu, 05 Jan 2023 22:22:55 +0100}, biburl = {https://dblp.org/rec/conf/besc/LiYCS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/clei/Parraga-AlavaI16, author = {Jorge Parraga{-}Alava and Mario Inostroza{-}Ponta}, title = {A bi-objective model for gene clustering combining expression data and external biological knowledge}, booktitle = {{XLII} Latin American Computing Conference, {CLEI} 2016, Valpara{\'{\i}}so, Chile, October 10-14, 2016}, pages = {1--12}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/CLEI.2016.7833327}, doi = {10.1109/CLEI.2016.7833327}, timestamp = {Wed, 16 Oct 2019 14:14:53 +0200}, biburl = {https://dblp.org/rec/conf/clei/Parraga-AlavaI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/AbdallahRMRI16, author = {Emna Ben Abdallah and Tony Ribeiro and Morgan Magnin and Olivier F. Roux and Katsumi Inoue}, editor = {Ezio Bartocci and Pietro Li{\`{o}} and Nicola Paoletti}, title = {Inference of Delayed Biological Regulatory Networks from Time Series Data}, booktitle = {Computational Methods in Systems Biology - 14th International Conference, {CMSB} 2016, Cambridge, UK, September 21-23, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9859}, pages = {30--48}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-45177-0\_3}, doi = {10.1007/978-3-319-45177-0\_3}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/AbdallahRMRI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cods/VatsaAS16, author = {Deepika Vatsa and Sumeet Agarwal and Ashwin Srinivasan}, editor = {Madhav V. Marathe and Mukesh K. Mohania and Mausam and Prateek Jain}, title = {Learning transition models of biological regulatory and signaling networks from noisy data}, booktitle = {Proceedings of the 3rd {IKDD} Conference on Data Science, {CODS} 2016, Pune, India, March 13-16, 2016}, pages = {9:1--9:6}, publisher = {{ACM}}, year = {2016}, url = {https://doi.org/10.1145/2888451.2888469}, doi = {10.1145/2888451.2888469}, timestamp = {Thu, 07 Jul 2022 16:49:00 +0200}, biburl = {https://dblp.org/rec/conf/cods/VatsaAS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eScience/AlzuruMTF16, author = {Icaro Alzuru and Andr{\'{e}}a M. Matsunaga and Maur{\'{\i}}cio O. Tsugawa and Jos{\'{e}} A. B. Fortes}, title = {Cooperative human-machine data extraction from biological collections}, booktitle = {12th {IEEE} International Conference on e-Science, e-Science 2016, Baltimore, MD, USA, October 23-27, 2016}, pages = {41--50}, publisher = {{IEEE} Computer Society}, year = {2016}, url = {https://doi.org/10.1109/eScience.2016.7870884}, doi = {10.1109/ESCIENCE.2016.7870884}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/eScience/AlzuruMTF16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/NowakLDC16, author = {Michael R. Nowak and Alexander Lozovskiy and Dimitri Dobroskok and Yoonsuck Choe}, title = {Knife-edge scanning microscopy for in silico study of cerebral blood flow: From biological imaging data to flow simulations}, booktitle = {38th Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society, {EMBC} 2016, Orlando, FL, USA, August 16-20, 2016}, pages = {5957--5960}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/EMBC.2016.7592085}, doi = {10.1109/EMBC.2016.7592085}, timestamp = {Wed, 16 Oct 2019 14:14:50 +0200}, biburl = {https://dblp.org/rec/conf/embc/NowakLDC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/PahujaLM16, author = {Vardaan Pahuja and Ritwik Kumar Layek and Pabitra Mitra}, title = {Learning a Probabilistic Boolean Network model from biological pathways and time-series expression data}, booktitle = {38th Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society, {EMBC} 2016, Orlando, FL, USA, August 16-20, 2016}, pages = {1471--1475}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/EMBC.2016.7590987}, doi = {10.1109/EMBC.2016.7590987}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/embc/PahujaLM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/euspn/CaninoSCMTGCV16, author = {Giovanni Canino and Mariagrazia Scarpino and Francesca Cristiano and Domenico Mirarchi and Giuseppe Tradigo and Pietro Hiram Guzzi and Giovanni Cuda and Pierangelo Veltri}, editor = {Elhadi M. Shakshuki}, title = {Geoblood: {A} Web Based Tool for Geo-analysis of Biological Data}, booktitle = {The 7th International Conference on Emerging Ubiquitous Systems and Pervasive Networks {(EUSPN} 2016)/The 6th International Conference on Current and Future Trends of Information and Communication Technologies in Healthcare (ICTH-2016)/Affiliated Workshops, September 19-22, 2016, London, United Kingdom}, series = {Procedia Computer Science}, volume = {98}, pages = {473--478}, publisher = {Elsevier}, year = {2016}, url = {https://doi.org/10.1016/j.procs.2016.09.077}, doi = {10.1016/J.PROCS.2016.09.077}, timestamp = {Thu, 08 Jul 2021 16:04:01 +0200}, biburl = {https://dblp.org/rec/conf/euspn/CaninoSCMTGCV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/Raghuvanshi16, author = {Saurabh Raghuvanshi}, editor = {Pankaj Jaiswal and Robert Hoehndorf and Cecilia N. Arighi and Austin Meier}, title = {Semantic Digitization of Experimental Data in Biological Sciences}, booktitle = {Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016}, series = {{CEUR} Workshop Proceedings}, volume = {1747}, publisher = {CEUR-WS.org}, year = {2016}, url = {https://ceur-ws.org/Vol-1747/IT703\_ICBO2016.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:23 +0100}, biburl = {https://dblp.org/rec/conf/icbo/Raghuvanshi16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icra/ShahriariRBDM16, author = {Navid Shahriari and Roy J. Roesthuis and Nick J. van de Berg and John van den Dobbelsteen and Sarthak Misra}, editor = {Danica Kragic and Antonio Bicchi and Alessandro De Luca}, title = {Steering an actuated-tip needle in biological tissue: Fusing FBG-sensor data and ultrasound images}, booktitle = {2016 {IEEE} International Conference on Robotics and Automation, {ICRA} 2016, Stockholm, Sweden, May 16-21, 2016}, pages = {4443--4449}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/ICRA.2016.7487644}, doi = {10.1109/ICRA.2016.7487644}, timestamp = {Wed, 16 Oct 2019 14:14:51 +0200}, biburl = {https://dblp.org/rec/conf/icra/ShahriariRBDM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/EshlemanS16, author = {Ryan Eshleman and Rahul Singh}, editor = {Anu G. Bourgeois and Pavel Skums and Xiang Wan and Alex Zelikovsky}, title = {Progression Reconstruction from Unsynchronized Biological Data using Cluster Spanning Trees}, booktitle = {Bioinformatics Research and Applications - 12th International Symposium, {ISBRA} 2016, Minsk, Belarus, June 5-8, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9683}, pages = {136--147}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-38782-6\_12}, doi = {10.1007/978-3-319-38782-6\_12}, timestamp = {Tue, 14 May 2019 10:00:51 +0200}, biburl = {https://dblp.org/rec/conf/isbra/EshlemanS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sebd/CaninoGSTV16, author = {Giovanni Canino and Pietro Hiram Guzzi and Mariagrazia Scarpino and Giuseppe Tradigo and Pierangelo Veltri}, editor = {Mario A. Bochicchio and Giansalvatore Mecca}, title = {Patient wellness: geoanalysis of biological and environmental data}, booktitle = {24th Italian Symposium on Advanced Database Systems, {SEBD} 2016, Ugento, Lecce, Italy, June 19-22, 2016, Ugento, Lecce, Italia, June 19-22, 2016}, pages = {278--285}, publisher = {Matematicamente.it}, year = {2016}, timestamp = {Mon, 12 Sep 2016 14:17:13 +0200}, biburl = {https://dblp.org/rec/conf/sebd/CaninoGSTV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/semweb/ParkKKYLLJHK16, author = {Junho Park and Min{-}Ji Kim and Eung{-}Hee Kim and Sung{-}Kwon Yang and Sungin Lee and Jin{-}Muk Lim and Hyunwhan Joe and Kyung{-}Sik Ha and Hong{-}Gee Kim}, editor = {Cui Tao and Guoqian Jiang and Dezhao Song and Jeff Heflin and Frank Schilder}, title = {BiDIP: a Biological Data Integration Platform for Transcriptome Analysis}, booktitle = {Proceedings of the First International Workshop on Biomedical Data Integration and Discovery {(BMDID} 2016) co-located with The 15th International Semantic Web Conference {(ISWC} 2016), Kobe, Japan, October 17, 2016}, series = {{CEUR} Workshop Proceedings}, volume = {1709}, publisher = {CEUR-WS.org}, year = {2016}, url = {https://ceur-ws.org/Vol-1709/BMDID\_2016\_paper\_8.pdf}, timestamp = {Fri, 10 Mar 2023 16:23:07 +0100}, biburl = {https://dblp.org/rec/conf/semweb/ParkKKYLLJHK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/semweb/TakatsukiSKTOOL16, author = {Terue Takatsuki and Mikako Saito and Sadahiro Kumagai and Eiki Takayama and Kazuya Ohshima and Nozomu Ohshiro and Kai Lenz and Nobuhiko Tanaka and Norio Kobayashi and Hiroshi Masuya}, editor = {Takahiro Kawamura and Heiko Paulheim}, title = {A {RDF} based Portal of Biological Phenotype Data produced in Japan}, booktitle = {Proceedings of the {ISWC} 2016 Posters {\&} Demonstrations Track co-located with 15th International Semantic Web Conference {(ISWC} 2016), Kobe, Japan, October 19, 2016}, series = {{CEUR} Workshop Proceedings}, volume = {1690}, publisher = {CEUR-WS.org}, year = {2016}, url = {https://ceur-ws.org/Vol-1690/paper10.pdf}, timestamp = {Fri, 10 Mar 2023 16:23:04 +0100}, biburl = {https://dblp.org/rec/conf/semweb/TakatsukiSKTOOL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swat4ls/DeraspeBBCCCCCH16, author = {Maxime D{\'{e}}raspe and Gail Binkley and Daniela Butano and Matthew Chadwick and J. Michael Cherry and Justin Clark{-}Casey and Sergio Contrino and Jacques Corbeil and Joshua Heimbach and Kalpana Karra and Rachel Lyne and Julie M. Sullivan and Yo Yehudi and Gos Micklem and Michel Dumontier}, editor = {Adrian Paschke and Albert Burger and Andrea Splendiani and M. Scott Marshall and Paolo Romano}, title = {Making Linked Data {SPARQL} with the InterMine Biological Data Warehouse}, booktitle = {Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, Amsterdam, The Netherlands, December 5-8, 2016}, series = {{CEUR} Workshop Proceedings}, volume = {1795}, publisher = {CEUR-WS.org}, year = {2016}, url = {https://ceur-ws.org/Vol-1795/paper8.pdf}, timestamp = {Fri, 10 Mar 2023 16:23:02 +0100}, biburl = {https://dblp.org/rec/conf/swat4ls/DeraspeBBCCCCCH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/tpcg/VogogiasKASC16, author = {Athanasios Vogogias and Jessie Kennedy and Daniel Archambault and V. Anne Smith and Hannah Currant}, editor = {Cagatay Turkay and Tao Ruan Wan}, title = {MLCut: Exploring Multi-Level Cuts in Dendrograms for Biological Data}, booktitle = {Computer Graphics {\&} Visual Computing, {CGVC} 2016, Bournemouth University, UK, 15-16 September 2016}, pages = {1--8}, publisher = {Eurographics Association}, year = {2016}, url = {https://doi.org/10.2312/cgvc.20161288}, doi = {10.2312/CGVC.20161288}, timestamp = {Thu, 04 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/tpcg/VogogiasKASC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/cu/p/AcharyaZ16, author = {Lipi R. Acharya and Dongxiao Zhu}, editor = {Shuguang Cui and Alfred O. Hero III and Zhi{-}Quan Luo and Jos{\'{e}} M. F. Moura}, title = {Gene-set-based inference of biological network topologies from big molecular profiling data}, booktitle = {Big Data over Networks}, pages = {391--408}, publisher = {Cambridge University Press}, year = {2016}, url = {https://doi.org/10.1017/CBO9781316162750.015}, doi = {10.1017/CBO9781316162750.015}, timestamp = {Tue, 16 May 2017 14:01:42 +0200}, biburl = {https://dblp.org/rec/books/cu/p/AcharyaZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/16/LongL16, author = {Tran Van Long and Lars Linsen}, editor = {Lars Linsen and Bernd Hamann and Hans{-}Christian Hege}, title = {Efficient Reordering of Parallel Coordinates and Its Application to Multidimensional Biological Data Visualization}, booktitle = {Visualization in Medicine and Life Sciences III, Towards Making an Impact}, series = {Mathematics and Visualization}, pages = {309--328}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-24523-2\_14}, doi = {10.1007/978-3-319-24523-2\_14}, timestamp = {Wed, 08 Feb 2023 10:32:17 +0100}, biburl = {https://dblp.org/rec/books/sp/16/LongL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/ccn/PedersenB16, author = {Edvard Pedersen and Lars Ailo Bongo}, editor = {Florin Pop and Joanna Kolodziej and Beniamino Di Martino}, title = {Big Biological Data Management}, booktitle = {Resource Management for Big Data Platforms - Algorithms, Modelling, and High-Performance Computing Techniques}, series = {Computer Communications and Networks}, pages = {265--277}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-44881-7\_13}, doi = {10.1007/978-3-319-44881-7\_13}, timestamp = {Wed, 21 Jun 2017 14:12:42 +0200}, biburl = {https://dblp.org/rec/series/ccn/PedersenB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/GrinblatBMGS16, author = {Guillermo L. Grinblat and Ariel E. Bay{\'{a}} and Diego H. Milone and Pablo M. Granitto and Georgina Stegmayer}, title = {Inferring unknown biological function by integration of {GO} annotations and gene expression data}, journal = {CoRR}, volume = {abs/1608.03672}, year = {2016}, url = {http://arxiv.org/abs/1608.03672}, eprinttype = {arXiv}, eprint = {1608.03672}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/GrinblatBMGS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Charpilloz15, author = {Christophe Charpilloz}, title = {Analysis of large biological data: metabolic network modularization and prediction of N-terminal acetylation}, school = {University of Geneva, Switzerland}, year = {2015}, url = {https://archive-ouverte.unige.ch/unige:86046}, doi = {10.13097/ARCHIVE-OUVERTE/UNIGE:86046}, timestamp = {Fri, 20 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Charpilloz15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Woods15, author = {Tonya M. Woods}, title = {Extracting meaningful statistics for the characterization and classification of biological, medical, and financial data}, school = {Georgia Institute of Technology, Atlanta, GA, {USA}}, year = {2015}, url = {http://hdl.handle.net/1853/53857}, timestamp = {Thu, 03 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Woods15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/dnb/Barghash15, author = {Ahmad Barghash}, title = {Identifying biological associations from high-throughput datasets}, school = {Saarland University}, year = {2015}, url = {http://scidok.sulb.uni-saarland.de/volltexte/2015/6265/}, urn = {urn:nbn:de:bsz:291-scidok-62658}, timestamp = {Sat, 17 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/dnb/Barghash15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/Brancotte15, author = {Bryan Brancotte}, title = {Agr{\'{e}}gation de classements avec {\'{e}}galit{\'{e}}s : algorithmes, guides {\`{a}} l'utilisateur et applications aux donn{\'{e}}es biologiques. (Rank aggregation with ties : algorithms, user guidance et applications to biologicals data)}, school = {University of Paris-Sud, Orsay, France}, year = {2015}, url = {https://tel.archives-ouvertes.fr/tel-01252694}, timestamp = {Tue, 21 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/hal/Brancotte15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/jp/Hasegawa15, author = {Takanori Hasegawa}, title = {Reconstructing Biological Systems Incorporating Multi-Source Biological Data via Data Assimilation Techniques}, school = {Kyoto University, Japan}, year = {2015}, url = {https://ci.nii.ac.jp/naid/500000925680}, doi = {10.14989/DOCTOR.K18699}, timestamp = {Tue, 24 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/jp/Hasegawa15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/us/Dhulekar15, author = {Nimit Dhulekar}, title = {Data analytics of time-series for complex (biological) systems}, school = {Rensselaer Polytechnic Institute, {USA}}, year = {2015}, url = {https://hdl.handle.net/20.500.13015/1440}, timestamp = {Tue, 27 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/us/Dhulekar15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/us/Iyer15, author = {Sowmya Iyer}, title = {Analysis of genomic data to derive biological conclusions on {(1)} transcriptional regulation in the human genome and {(2)} antibody resistance in hepatitis {C} virus}, school = {Boston University, {USA}}, year = {2015}, url = {https://hdl.handle.net/2144/16067}, timestamp = {Fri, 13 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/us/Iyer15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/alr/MatsumaeIMIOT15, author = {Hiromi Matsumae and Ryosuke R. Ishiwata and Toshifumi Minamoto and Norio Ishida and Soichi Ogishima and Hiroshi Tanaka}, title = {Detection of periodic patterns in microarray data reveals novel oscillating transcripts of biological rhythms in Ciona intestinalis}, journal = {Artif. Life Robotics}, volume = {20}, number = {4}, pages = {347--352}, year = {2015}, url = {https://doi.org/10.1007/s10015-015-0237-6}, doi = {10.1007/S10015-015-0237-6}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/alr/MatsumaeIMIOT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bigdata/BierutC15, author = {Laura J. Bierut and David Cesarini}, title = {How Genetic and Other Biological Factors Interact with Smoking Decisions}, journal = {Big Data}, volume = {3}, number = {3}, pages = {198--202}, year = {2015}, url = {https://doi.org/10.1089/big.2015.0013}, doi = {10.1089/BIG.2015.0013}, timestamp = {Thu, 28 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bigdata/BierutC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/WeissZHDSSM15, author = {Talia Weiss and Amanda L. Zieselman and Douglas P. Hill and Solomon Gilbert Diamond and Li Shen and Andrew J. Saykin and Jason H. Moore}, title = {The role of visualization and 3-D printing in biological data mining}, journal = {BioData Min.}, volume = {8}, pages = {22}, year = {2015}, url = {https://doi.org/10.1186/s13040-015-0056-2}, doi = {10.1186/S13040-015-0056-2}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/WeissZHDSSM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/WilliamsM15, author = {Scott M. Williams and Jason H. Moore}, title = {Lumping versus splitting: the need for biological data mining in precision medicine}, journal = {BioData Min.}, volume = {8}, pages = {16}, year = {2015}, url = {https://doi.org/10.1186/s13040-015-0049-1}, doi = {10.1186/S13040-015-0049-1}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/WilliamsM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/BelinkyNSZSSL15, author = {Frida Belinky and Noam Nativ and Gil Stelzer and Shahar Zimmerman and Tsippi Iny Stein and Marilyn Safran and Doron Lancet}, title = {PathCards: multi-source consolidation of human biological pathways}, journal = {Database J. Biol. Databases Curation}, volume = {2015}, year = {2015}, url = {https://doi.org/10.1093/database/bav006}, doi = {10.1093/DATABASE/BAV006}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodb/BelinkyNSZSSL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/BoueTWHFPSSFAMV15, author = {St{\'{e}}phanie Bou{\'{e}} and Marja Talikka and Jurjen Willem Westra and William Hayes and Anselmo Di Fabio and Jennifer Park and Walter K. Schlage and Alain Sewer and Brett Fields and Sam Ansari and Florian Martin and Emilija Veljkovic and Ren{\'{e}}e Kenney and Manuel C. Peitsch and Julia Hoeng}, title = {Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems}, journal = {Database J. Biol. Databases Curation}, volume = {2015}, year = {2015}, url = {https://doi.org/10.1093/database/bav030}, doi = {10.1093/DATABASE/BAV030}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/BoueTWHFPSSFAMV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/SzostakAMFTILHP15, author = {Justyna Szostak and Sam Ansari and Sumit Madan and Juliane Fluck and Marja Talikka and Anita Iskandar and Hector De Leon and Martin Hofmann{-}Apitius and Manuel C. Peitsch and Julia Hoeng}, title = {Construction of biological networks from unstructured information based on a semi-automated curation workflow}, journal = {Database J. Biol. Databases Curation}, volume = {2015}, year = {2015}, url = {https://doi.org/10.1093/database/bav057}, doi = {10.1093/DATABASE/BAV057}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/SzostakAMFTILHP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KyodaTHO15, author = {Koji Kyoda and Yukako Tohsato and Kenneth H. L. Ho and Shuichi Onami}, title = {Biological Dynamics Markup Language {(BDML):} an open format for representing quantitative biological dynamics data}, journal = {Bioinform.}, volume = {31}, number = {7}, pages = {1044--1052}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu767}, doi = {10.1093/BIOINFORMATICS/BTU767}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KyodaTHO15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TsoiEA15, author = {Lam C. Tsoi and James T. Elder and Gon{\c{c}}alo R. Abecasis}, title = {Graphical algorithm for integration of genetic and biological data: proof of principle using psoriasis as a model}, journal = {Bioinform.}, volume = {31}, number = {8}, pages = {1243--1249}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu799}, doi = {10.1093/BIOINFORMATICS/BTU799}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TsoiEA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangAWLGPTWSB15, author = {Qunyuan Zhang and Haley Abel and Alan Wells and Petra Lenzini and Felicia Gomez and Michael A. Province and Alan A. Templeton and George M. Weinstock and Nita H. Salzman and Ingrid B. Borecki}, title = {Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data}, journal = {Bioinform.}, volume = {31}, number = {10}, pages = {1607--1613}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu855}, doi = {10.1093/BIOINFORMATICS/BTU855}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangAWLGPTWSB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AertsMNNSW15, author = {Jan Aerts and G. Elisabeta Marai and Kay Nieselt and Cydney B. Nielsen and Marc Streit and Daniel Weiskopf}, title = {Highlights from the 5th Symposium on Biological Data Visualization: Part 1}, journal = {{BMC} Bioinform.}, volume = {16}, number = {{S11}}, pages = {S1}, year = {2015}, url = {https://doi.org/10.1186/1471-2105-16-s11-s1}, doi = {10.1186/1471-2105-16-S11-S1}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/AertsMNNSW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BharH0W15, author = {Anirban Bhar and Martin Haubrock and Anirban Mukhopadhyay and Edgar Wingender}, title = {Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes}, journal = {{BMC} Bioinform.}, volume = {16}, pages = {200:1--200:19}, year = {2015}, url = {https://doi.org/10.1186/s12859-015-0635-8}, doi = {10.1186/S12859-015-0635-8}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BharH0W15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JaffeHKWCMLC15, author = {Andrew E. Jaffe and Thomas Hyde and Joel Kleinman and Daniel Weinbergern and Joshua Chenoweth and Ronald McKay and Jeffrey T. Leek and Carlo Colantuoni}, title = {Practical impacts of genomic data "cleaning" on biological discovery using surrogate variable analysis}, journal = {{BMC} Bioinform.}, volume = {16}, pages = {372:1--372:10}, year = {2015}, url = {https://doi.org/10.1186/s12859-015-0808-5}, doi = {10.1186/S12859-015-0808-5}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/JaffeHKWCMLC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KimNSJAMK15, author = {Sa Kim and Tuong Nguyen and Na Seo and Seunghup Jung and Hyun An and David A. Mills and Jae Kim}, title = {Comparative proteomics: assessment of biological variability and dataset comparability}, journal = {{BMC} Bioinform.}, volume = {16}, pages = {121:1--121:10}, year = {2015}, url = {https://doi.org/10.1186/s12859-015-0561-9}, doi = {10.1186/S12859-015-0561-9}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KimNSJAMK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VehlowKBHWG15, author = {Corinna Vehlow and David P. Kao and Michael R. Bristow and Lawrence E. Hunter and Daniel Weiskopf and Carsten G{\"{o}}rg}, title = {Visual analysis of biological data-knowledge networks}, journal = {{BMC} Bioinform.}, volume = {16}, pages = {135:1--135:15}, year = {2015}, url = {https://doi.org/10.1186/s12859-015-0550-z}, doi = {10.1186/S12859-015-0550-Z}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/VehlowKBHWG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhuSGSFC15, author = {Yongnan Zhu and Liang Sun and Alexander Garbarino and Carl J. Schmidt and Jinglong Fang and Jian Chen}, title = {PathRings: a web-based tool for exploration of ortholog and expression data in biological pathways}, journal = {{BMC} Bioinform.}, volume = {16}, pages = {165:1--165:7}, year = {2015}, url = {https://doi.org/10.1186/s12859-015-0585-1}, doi = {10.1186/S12859-015-0585-1}, timestamp = {Thu, 02 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhuSGSFC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YinGMGS15, author = {Weiwei Yin and Swetha Garimalla and Alberto Moreno and Mary R. Galinski and Mark P. Styczynski}, title = {A tree-like Bayesian structure learning algorithm for small-sample datasets from complex biological model systems}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {49}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0194-7}, doi = {10.1186/S12918-015-0194-7}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/YinGMGS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/PirimEP15, author = {Harun Pirim and Burak Eksioglu and Andy D. Perkins}, title = {Clustering high throughput biological data with B-MST, a minimum spanning tree based heuristic}, journal = {Comput. Biol. Medicine}, volume = {62}, pages = {94--102}, year = {2015}, url = {https://doi.org/10.1016/j.compbiomed.2015.03.031}, doi = {10.1016/J.COMPBIOMED.2015.03.031}, timestamp = {Wed, 02 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/PirimEP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cea/TijskensSKJ15, author = {L. M. M. Tijskens and R. E. Schouten and Pawel Konopacki and Geurt Jongbloed}, title = {Basic principles of analysing biological and technical variation in non-destructive data}, journal = {Comput. Electron. Agric.}, volume = {111}, pages = {121--126}, year = {2015}, url = {https://doi.org/10.1016/j.compag.2014.12.022}, doi = {10.1016/J.COMPAG.2014.12.022}, timestamp = {Tue, 24 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cea/TijskensSKJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmpb/NepomucenoLNA15, author = {Juan A. Nepomuceno and Alicia Troncoso Lora and Isabel A. Nepomuceno{-}Chamorro and Jes{\'{u}}s S. Aguilar{-}Ruiz}, title = {Integrating biological knowledge based on functional annotations for biclustering of gene expression data}, journal = {Comput. Methods Programs Biomed.}, volume = {119}, number = {3}, pages = {163--180}, year = {2015}, url = {https://doi.org/10.1016/j.cmpb.2015.02.010}, doi = {10.1016/J.CMPB.2015.02.010}, timestamp = {Thu, 20 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cmpb/NepomucenoLNA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/ZouMYZ15, author = {Dong Zou and Lina Ma and Jun Yu and Zhang Zhang}, title = {Biological Databases for Human Research}, journal = {Genom. Proteom. Bioinform.}, volume = {13}, number = {1}, pages = {55--63}, year = {2015}, url = {https://doi.org/10.1016/j.gpb.2015.01.006}, doi = {10.1016/J.GPB.2015.01.006}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/gpb/ZouMYZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijait/KouzinopoulosAPM15, author = {Charalampos S. Kouzinopoulos and John{-}Alexander M. Assael and Themistoklis K. Pyrgiotis and Konstantinos G. Margaritis}, title = {A Hybrid Parallel Implementation of the Aho-Corasick and Wu-Manber Algorithms Using {NVIDIA} {CUDA} and {MPI} Evaluated on a Biological Sequence Database}, journal = {Int. J. Artif. Intell. Tools}, volume = {24}, number = {1}, pages = {1540001:1--1540001:32}, year = {2015}, url = {https://doi.org/10.1142/S0218213015400011}, doi = {10.1142/S0218213015400011}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijait/KouzinopoulosAPM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/BernaboMB15, author = {Nicola Bernab{\`{o}} and Mauro Mattioli and Barbara Barboni}, title = {Signal transduction in the activation of spermatozoa compared to other signalling pathways: a biological networks study}, journal = {Int. J. Data Min. Bioinform.}, volume = {12}, number = {1}, pages = {59--69}, year = {2015}, url = {https://doi.org/10.1504/IJDMB.2015.068953}, doi = {10.1504/IJDMB.2015.068953}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/BernaboMB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/ChenGLM15, author = {Yifei Chen and Hongjian Guo and Feng Liu and Bernard Manderick}, title = {Improving protein-protein interaction article classification using biological domain knowledge}, journal = {Int. J. Data Min. Bioinform.}, volume = {12}, number = {2}, pages = {144--166}, year = {2015}, url = {https://doi.org/10.1504/IJDMB.2015.069415}, doi = {10.1504/IJDMB.2015.069415}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/ChenGLM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/FaroGM15, author = {Alberto Faro and Daniela Giordano and Francesco Maiorana}, title = {Mining literatures to discover novel multiple biological associations in a disease context}, journal = {Int. J. Data Min. Bioinform.}, volume = {12}, number = {2}, pages = {224--256}, year = {2015}, url = {https://doi.org/10.1504/IJDMB.2015.069419}, doi = {10.1504/IJDMB.2015.069419}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/FaroGM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/KimSTH15, author = {Sunghan Kim and Fabien Scalzo and Donatello Telesca and Xiao Hu}, title = {Ensemble of sparse classifiers for high-dimensional biological data}, journal = {Int. J. Data Min. Bioinform.}, volume = {12}, number = {2}, pages = {167--183}, year = {2015}, url = {https://doi.org/10.1504/IJDMB.2015.069416}, doi = {10.1504/IJDMB.2015.069416}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/KimSTH15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/KuttiyapillaiR15, author = {Dhanasekaran Kuttiyapillai and R. Rajeswari}, title = {A method for extracting task-oriented information from biological text sources}, journal = {Int. J. Data Min. Bioinform.}, volume = {12}, number = {4}, pages = {387--399}, year = {2015}, url = {https://doi.org/10.1504/IJDMB.2015.070072}, doi = {10.1504/IJDMB.2015.070072}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/KuttiyapillaiR15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/LiZ15, author = {Limin Li and Shuqin Zhang}, title = {Orthogonal projection correction for confounders in biological data classification}, journal = {Int. J. Data Min. Bioinform.}, volume = {13}, number = {2}, pages = {181--196}, year = {2015}, url = {https://doi.org/10.1504/IJDMB.2015.071553}, doi = {10.1504/IJDMB.2015.071553}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/LiZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/ReddyA15, author = {Chandan K. Reddy and Mohammad S. Aziz}, title = {Predicting gene functions from multiple biological sources using novel ensemble methods}, journal = {Int. J. Data Min. Bioinform.}, volume = {12}, number = {2}, pages = {184--206}, year = {2015}, url = {https://doi.org/10.1504/IJDMB.2015.069418}, doi = {10.1504/IJDMB.2015.069418}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/ReddyA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/WangZ15, author = {Shuliang Wang and Yiping Zhao}, title = {Analysing large biological data sets with an improved algorithm for {MIC}}, journal = {Int. J. Data Min. Bioinform.}, volume = {13}, number = {2}, pages = {158--170}, year = {2015}, url = {https://doi.org/10.1504/IJDMB.2015.071548}, doi = {10.1504/IJDMB.2015.071548}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/WangZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijhis/Soncco-AlvarezABA15, author = {Jos{\'{e}} Luis Soncco{-}{\'{A}}lvarez and Gabriel Marchesan Almeida and J{\"{u}}rgen Becker and Mauricio Ayala{-}Rinc{\'{o}}n}, title = {Parallelization of genetic algorithms for sorting permutations by reversals over biological data}, journal = {Int. J. Hybrid Intell. Syst.}, volume = {12}, number = {1}, pages = {53--64}, year = {2015}, url = {https://doi.org/10.3233/HIS-140205}, doi = {10.3233/HIS-140205}, timestamp = {Fri, 19 Jul 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijhis/Soncco-AlvarezABA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/it/GeraschKNS0KL15, author = {Andreas Gerasch and Jan K{\"{u}}ntzer and Peter Niermann and Daniel St{\"{o}}ckel and Michael Kaufmann and Oliver Kohlbacher and Hans{-}Peter Lenhof}, title = {Network-based interactive navigation and analysis of large biological datasets}, journal = {it Inf. Technol.}, volume = {57}, number = {1}, pages = {37--48}, year = {2015}, url = {https://doi.org/10.1515/itit-2014-1076}, doi = {10.1515/ITIT-2014-1076}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/it/GeraschKNS0KL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbi/KimKYP15, author = {Jeongwoo Kim and Hyunjin Kim and Youngmi Yoon and Sanghyun Park}, title = {LGscore: {A} method to identify disease-related genes using biological literature and Google data}, journal = {J. Biomed. Informatics}, volume = {54}, pages = {270--282}, year = {2015}, url = {https://doi.org/10.1016/j.jbi.2015.01.003}, doi = {10.1016/J.JBI.2015.01.003}, timestamp = {Wed, 15 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbi/KimKYP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BaurB15, author = {Brittany A. Baur and Serdar Bozdag}, title = {A Canonical Correlation Analysis-Based Dynamic Bayesian Network Prior to Infer Gene Regulatory Networks from Multiple Types of Biological Data}, journal = {J. Comput. Biol.}, volume = {22}, number = {4}, pages = {289--299}, year = {2015}, url = {https://doi.org/10.1089/cmb.2014.0296}, doi = {10.1089/CMB.2014.0296}, timestamp = {Fri, 06 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BaurB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/SakhanenkoG15, author = {Nikita A. Sakhanenko and David J. Galas}, title = {Biological Data Analysis as an Information Theory Problem: Multivariable Dependence Measures and the Shadows Algorithm}, journal = {J. Comput. Biol.}, volume = {22}, number = {11}, pages = {1005--1024}, year = {2015}, url = {https://doi.org/10.1089/cmb.2015.0051}, doi = {10.1089/CMB.2015.0051}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/SakhanenkoG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jossac/JiangQCC15, author = {Hao Jiang and Yushan Qiu and Xiaoqing Cheng and Wai{-}Ki Ching}, title = {On Eigen-matrix translation method for classification of biological data}, journal = {J. Syst. Sci. Complex.}, volume = {28}, number = {5}, pages = {1212--1230}, year = {2015}, url = {https://doi.org/10.1007/s11424-015-3043-2}, doi = {10.1007/S11424-015-3043-2}, timestamp = {Mon, 08 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jossac/JiangQCC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SquizzatoPBGCLU15, author = {Silvano Squizzato and Young Mi Park and Nicola Buso and Tamer Gur and Andrew Peter Cowley and Weizhong Li and Mahmut Uludag and Sangya Pundir and Jennifer A. Cham and Hamish McWilliam and Rodrigo Lopez}, title = {The {EBI} Search engine: providing search and retrieval functionality for biological data from {EMBL-EBI}}, journal = {Nucleic Acids Res.}, volume = {43}, number = {Webserver-Issue}, pages = {W585--W588}, year = {2015}, url = {https://doi.org/10.1093/nar/gkv316}, doi = {10.1093/NAR/GKV316}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/SquizzatoPBGCLU15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ValentiniKPJS15, author = {Erica Valentini and Alexey G. Kikhney and Gianpietro Previtali and Cy M. Jeffries and Dmitri I. Svergun}, title = {SASBDB, a repository for biological small-angle scattering data}, journal = {Nucleic Acids Res.}, volume = {43}, number = {Database-Issue}, pages = {357--363}, year = {2015}, url = {https://doi.org/10.1093/nar/gku1047}, doi = {10.1093/NAR/GKU1047}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/ValentiniKPJS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/KingDESLP15, author = {Zachary A. King and Andreas Dr{\"{a}}ger and Ali Ebrahim and Nikolaus Sonnenschein and Nathan E. Lewis and Bernhard O. Palsson}, title = {Escher: {A} Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways}, journal = {PLoS Comput. Biol.}, volume = {11}, number = {8}, year = {2015}, url = {https://doi.org/10.1371/journal.pcbi.1004321}, doi = {10.1371/JOURNAL.PCBI.1004321}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/KingDESLP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SteinMS15, author = {Richard R. Stein and Debora S. Marks and Chris Sander}, title = {Inferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability Models}, journal = {PLoS Comput. Biol.}, volume = {11}, number = {7}, year = {2015}, url = {https://doi.org/10.1371/journal.pcbi.1004182}, doi = {10.1371/JOURNAL.PCBI.1004182}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/SteinMS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZhanCECACL15, author = {Mei Zhan and Matthew M. Crane and Eugeni V. Entchev and Antonio Caballero and Diana Andrea Fernandes de Abreu and QueeLim Ch'ng and Hang Lu}, title = {Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using \emph{Caenorhabditis elegans}}, journal = {PLoS Comput. Biol.}, volume = {11}, number = {4}, year = {2015}, url = {https://doi.org/10.1371/journal.pcbi.1004194}, doi = {10.1371/JOURNAL.PCBI.1004194}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/ZhanCECACL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/polibits/RinaldiLLGBSC15, author = {Fabio Rinaldi and Oscar Lithgow{-}Serrano and Alejandra L{\'{o}}pez{-}Fuentes and Socorro Gama{-}Castro and Yalbi I. Balderas{-}Mart{\'{\i}}nez and Hilda Solano{-}Lira and Julio Collado{-}Vides}, title = {An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database}, journal = {Polibits}, volume = {52}, pages = {25--31}, year = {2015}, url = {https://doi.org/10.17562/PB-52-3}, doi = {10.17562/PB-52-3}, timestamp = {Mon, 16 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/polibits/RinaldiLLGBSC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/DengDS15, author = {Chao Deng and Timothy Daley and Andrew D. Smith}, title = {Applications of species accumulation curves in large-scale biological data analysis}, journal = {Quant. Biol.}, volume = {3}, number = {3}, pages = {135--144}, year = {2015}, url = {https://doi.org/10.1007/s40484-015-0049-7}, doi = {10.1007/S40484-015-0049-7}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/quanbio/DengDS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BordonMZM15, author = {Jure Bordon and Miha Moskon and Nikolaj Zimic and Miha Mraz}, title = {Fuzzy Logic as a Computational Tool for Quantitative Modelling of Biological Systems with Uncertain Kinetic Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {12}, number = {5}, pages = {1199--1205}, year = {2015}, url = {https://doi.org/10.1109/TCBB.2015.2424424}, doi = {10.1109/TCBB.2015.2424424}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BordonMZM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/titb/Taha15, author = {Kamal Taha}, title = {Extracting Various Classes of Data From Biological Text Using the Concept of Existence Dependency}, journal = {{IEEE} J. Biomed. Health Informatics}, volume = {19}, number = {6}, pages = {1918--1928}, year = {2015}, url = {https://doi.org/10.1109/JBHI.2015.2392786}, doi = {10.1109/JBHI.2015.2392786}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/titb/Taha15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/vlsisp/Abu-JamousFRN15, author = {Basel Abu{-}Jamous and Rui Fa and David Roberts and Asoke K. Nandi}, title = {Application of the Bi-CoPaM Method to Five Escherichia Coli Datasets Generated under Various Biological Conditions}, journal = {J. Signal Process. Syst.}, volume = {79}, number = {2}, pages = {159--166}, year = {2015}, url = {https://doi.org/10.1007/s11265-014-0919-7}, doi = {10.1007/S11265-014-0919-7}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/vlsisp/Abu-JamousFRN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/IEEEcloud/ToniniS15, author = {Gustavo Tonini and Frank Siqueira}, editor = {Calton Pu and Ajay Mohindra}, title = {Improving the Performance of Biological Data Analysis in Cloud Computing Platforms}, booktitle = {8th {IEEE} International Conference on Cloud Computing, {CLOUD} 2015, New York City, NY, USA, June 27 - July 2, 2015}, pages = {766--772}, publisher = {{IEEE} Computer Society}, year = {2015}, url = {https://doi.org/10.1109/CLOUD.2015.106}, doi = {10.1109/CLOUD.2015.106}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/IEEEcloud/ToniniS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/LanLSW15, author = {Haidong Lan and Weiguo Liu and Bertil Schmidt and Bingqiang Wang}, editor = {Jun Huan and Satoru Miyano and Amarda Shehu and Xiaohua Tony Hu and Bin Ma and Sanguthevar Rajasekaran and Vijay K. Gombar and Matthieu{-}P. Schapranow and Illhoi Yoo and Jiayu Zhou and Brian Chen and Vinay Pai and Brian G. Pierce}, title = {Accelerating large-scale biological database search on Xeon Phi-based neo-heterogeneous architectures}, booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2015, Washington, DC, USA, November 9-12, 2015}, pages = {503--510}, publisher = {{IEEE} Computer Society}, year = {2015}, url = {https://doi.org/10.1109/BIBM.2015.7359735}, doi = {10.1109/BIBM.2015.7359735}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bibm/LanLSW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/birthday/PapageorgiouV15, author = {Haralambos Papageorgiou and Maria Vardaki}, editor = {Gilles Venturini and Paula Brito}, title = {Classical and Symbolic metadata setting for biological datasets}, booktitle = {Symbolic Data Analysis and Visualization: Special Issue in honor of Monique Noirhomme-Fraiture}, series = {{RNTI}}, volume = {{E-29}}, pages = {49--58}, publisher = {Hermann-{\'{E}}ditions}, year = {2015}, url = {http://editions-rnti.fr/?inprocid=1002141}, timestamp = {Fri, 22 Jan 2016 10:31:45 +0100}, biburl = {https://dblp.org/rec/conf/birthday/PapageorgiouV15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ciarp/VicenteMROL15, author = {F{\'{a}}bio Fernandes da Rocha Vicente and Euler Menezes and Gabriel Rubino and Juliana de Oliveira and Fabr{\'{\i}}cio Martins Lopes}, editor = {Alvaro Pardo and Josef Kittler}, title = {A Feature Selection Approach for Evaluate the Inference of GRNs Through Biological Data Integration - {A} Case Study on A. Thaliana}, booktitle = {Progress in Pattern Recognition, Image Analysis, Computer Vision, and Applications - 20th Iberoamerican Congress, {CIARP} 2015, Montevideo, Uruguay, November 9-12, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9423}, pages = {667--675}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-25751-8\_80}, doi = {10.1007/978-3-319-25751-8\_80}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ciarp/VicenteMROL15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibcb/SoylevA15, author = {Arda Soylev and Osman Abul}, title = {{REFBSS:} Reference based similarity search in biological network databases}, booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics and Computational Biology, {CIBCB} 2015, Niagara Falls, ON, Canada, August 12-15, 2015}, pages = {1--8}, publisher = {{IEEE}}, year = {2015}, url = {https://doi.org/10.1109/CIBCB.2015.7300279}, doi = {10.1109/CIBCB.2015.7300279}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cibcb/SoylevA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ciss/JalaliMC15, author = {Bahram Jalali and Ata Mahjoubfar and Claire L. Chen}, title = {High-throughput biological cell classification featuring real-time optical data compression}, booktitle = {49th Annual Conference on Information Sciences and Systems, {CISS} 2015, Baltimore, MD, USA, March 18-20, 2015}, pages = {1--3}, publisher = {{IEEE}}, year = {2015}, url = {https://doi.org/10.1109/CISS.2015.7086896}, doi = {10.1109/CISS.2015.7086896}, timestamp = {Wed, 16 Oct 2019 14:14:51 +0200}, biburl = {https://dblp.org/rec/conf/ciss/JalaliMC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eva/Stadon15, author = {Julian Stadon}, editor = {Kia Ng and Jonathan P. Bowen and Nick Lambert}, title = {Data Body Banking: Understanding Post Biological Identity through Embodied Mixed Reality Art}, booktitle = {Electronic Visualisation and the Arts, {EVA} 2015, London, UK, 7-9 July 2015}, series = {Workshops in Computing}, publisher = {{BCS}}, year = {2015}, url = {http://ewic.bcs.org/content/ConWebDoc/54906}, timestamp = {Fri, 27 Aug 2021 10:57:08 +0200}, biburl = {https://dblp.org/rec/conf/eva/Stadon15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gbrpr/CarlettiFVJ15, author = {Vincenzo Carletti and Pasquale Foggia and Mario Vento and Xiaoyi Jiang}, editor = {Cheng{-}Lin Liu and Bin Luo and Walter G. Kropatsch and Jian Cheng}, title = {Report on the First Contest on Graph Matching Algorithms for Pattern Search in Biological Databases}, booktitle = {Graph-Based Representations in Pattern Recognition - 10th {IAPR-TC-15} International Workshop, GbRPR 2015, Beijing, China, May 13-15, 2015. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9069}, pages = {178--187}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-18224-7\_18}, doi = {10.1007/978-3-319-18224-7\_18}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/gbrpr/CarlettiFVJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hci/WinklerPJ15, author = {Manuel H. Winkler and Herbert Plischke and Werner Jensch}, editor = {Margherita Antona and Constantine Stephanidis}, title = {Subjective Ratings of Biological Effective Light in Seminar Rooms and How to Handle Small Sample Sizes of Ordinal Data}, booktitle = {Universal Access in Human-Computer Interaction. Access to Interaction - 9th International Conference, {UAHCI} 2015, Held as Part of {HCI} International 2015, Los Angeles, CA, USA, August 2-7, 2015, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {9176}, pages = {594--603}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-20681-3\_56}, doi = {10.1007/978-3-319-20681-3\_56}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/hci/WinklerPJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icdm/BhardwajDB15, author = {Manju Bhardwaj and Debasis Dash and Vasudha Bhatnagar}, title = {Accurate Classification of Biological Data Using Ensembles}, booktitle = {{IEEE} International Conference on Data Mining Workshop, {ICDMW} 2015, Atlantic City, NJ, USA, November 14-17, 2015}, pages = {1486--1493}, publisher = {{IEEE} Computer Society}, year = {2015}, url = {https://doi.org/10.1109/ICDMW.2015.229}, doi = {10.1109/ICDMW.2015.229}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icdm/BhardwajDB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iclp/AngelopoulosG15, author = {Nicos Angelopoulos and Georgios Giamas}, editor = {Marina De Vos and Thomas Eiter and Yuliya Lierler and Francesca Toni}, title = {A Logical Approach to Working with Biological Databases}, booktitle = {Proceedings of the Technical Communications of the 31st International Conference on Logic Programming {(ICLP} 2015), Cork, Ireland, August 31 - September 4, 2015}, series = {{CEUR} Workshop Proceedings}, volume = {1433}, publisher = {CEUR-WS.org}, year = {2015}, url = {https://ceur-ws.org/Vol-1433/tc\_74.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:26 +0100}, biburl = {https://dblp.org/rec/conf/iclp/AngelopoulosG15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/KrasowskiBKKHK15, author = {Nikola Krasowski and Thorsten Beier and Graham W. Knott and Ullrich K{\"{o}}the and Fred A. Hamprecht and Anna Kreshuk}, title = {Improving 3D {EM} data segmentation by joint optimization over boundary evidence and biological priors}, booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015}, pages = {536--539}, publisher = {{IEEE}}, year = {2015}, url = {https://doi.org/10.1109/ISBI.2015.7163929}, doi = {10.1109/ISBI.2015.7163929}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/KrasowskiBKKHK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/PrestonJW15, author = {J. Samuel Preston and Sarang C. Joshi and Ross T. Whitaker}, title = {Multiscale {MRF} optimization for robust registration of 2D biological data}, booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015}, pages = {302--305}, publisher = {{IEEE}}, year = {2015}, url = {https://doi.org/10.1109/ISBI.2015.7163873}, doi = {10.1109/ISBI.2015.7163873}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/PrestonJW15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/macis/BouaguelMM15, author = {Waad Bouaguel and Emna Mouelhi and Ghazi Bel Mufti}, editor = {Ilias S. Kotsireas and Siegfried M. Rump and Chee K. Yap}, title = {New Method for Instance Feature Selection Using Redundant Features for Biological Data}, booktitle = {Mathematical Aspects of Computer and Information Sciences - 6th International Conference, {MACIS} 2015, Berlin, Germany, November 11-13, 2015, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {9582}, pages = {398--405}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-32859-1\_34}, doi = {10.1007/978-3-319-32859-1\_34}, timestamp = {Tue, 14 May 2019 10:00:52 +0200}, biburl = {https://dblp.org/rec/conf/macis/BouaguelMM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mda/Ciufudean15, author = {Calin Ciufudean}, editor = {Petra Perner}, title = {Basic Support of Fuzzy Filters of Biological Data}, booktitle = {Advances in Mass Data Analysis of Images and Signals in Medicine, Biotechnology, Chemistry and Food Industry, 10th International Conference, {MDA} 2015, Hamburg, Germany, July 2015, Proceedings}, pages = {17--28}, publisher = {ibai Publishing}, year = {2015}, timestamp = {Sun, 22 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/mda/Ciufudean15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mike/MouelhiBM15, author = {Emna Mouelhi and Waad Bouaguel and Ghazi Bel Mufti}, editor = {Rajendra Prasath and Anil Kumar Vuppala and T. Kathirvalavakumar}, title = {A Redundancy Study for Feature Selection in Biological Data}, booktitle = {Mining Intelligence and Knowledge Exploration - Third International Conference, {MIKE} 2015, Hyderabad, India, December 9-11, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9468}, pages = {22--28}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-26832-3\_3}, doi = {10.1007/978-3-319-26832-3\_3}, timestamp = {Sun, 25 Oct 2020 22:46:15 +0100}, biburl = {https://dblp.org/rec/conf/mike/MouelhiBM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pdp/PedersenREB15, author = {Edvard Pedersen and Inge Alexander Raknes and Martin Ernstsen and Lars Ailo Bongo}, editor = {Masoud Daneshtalab and Marco Aldinucci and Ville Lepp{\"{a}}nen and Johan Lilius and Mats Brorsson}, title = {Integrating Data-Intensive Computing Systems with Biological Data Analysis Frameworks}, booktitle = {23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing, {PDP} 2015, Turku, Finland, March 4-6, 2015}, pages = {733--740}, publisher = {{IEEE} Computer Society}, year = {2015}, url = {https://doi.org/10.1109/PDP.2015.106}, doi = {10.1109/PDP.2015.106}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/pdp/PedersenREB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/GesingCT15, author = {Sandra Gesing and Thomas Richard Connor and Ian J. Taylor}, title = {Genomics and Biological Big Data: Facing Current and Future Challenges around Data and Software Sharing and Reproducibility}, journal = {CoRR}, volume = {abs/1511.02689}, year = {2015}, url = {http://arxiv.org/abs/1511.02689}, eprinttype = {arXiv}, eprint = {1511.02689}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/GesingCT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/PedersenB15, author = {Edvard Pedersen and Lars Ailo Bongo}, title = {Large-scale Biological Meta-Database Management}, journal = {CoRR}, volume = {abs/1503.07759}, year = {2015}, url = {http://arxiv.org/abs/1503.07759}, eprinttype = {arXiv}, eprint = {1503.07759}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/PedersenB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/Raza15, author = {Khalid Raza}, title = {Formal Concept Analysis for Knowledge Discovery from Biological Data}, journal = {CoRR}, volume = {abs/1506.00366}, year = {2015}, url = {http://arxiv.org/abs/1506.00366}, eprinttype = {arXiv}, eprint = {1506.00366}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/Raza15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/YuDDB15, author = {Yun William Yu and Noah M. Daniels and David Christian Danko and Bonnie Berger}, title = {Entropy-scaling search of massive biological data}, journal = {CoRR}, volume = {abs/1503.05638}, year = {2015}, url = {http://arxiv.org/abs/1503.05638}, eprinttype = {arXiv}, eprint = {1503.05638}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/YuDDB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:books/hal/SmailTabbone14, author = {Malika Sma{\"{\i}}l{-}Tabbone}, title = {Contributions {\`{a}} l'extraction de connaissances {\`{a}} partir de donn{\'{e}}es biologiques. (Contribution to knowledge extraction from biological data)}, year = {2014}, url = {https://tel.archives-ouvertes.fr/tel-01093943}, timestamp = {Sat, 30 Sep 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/hal/SmailTabbone14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Adhikari14, author = {Prem Raj Adhikari}, title = {Probabilistic Modelling of Multiresolution Biological Data}, school = {Aalto University, Helsinki, Finland}, year = {2014}, url = {https://aaltodoc.aalto.fi/handle/123456789/14302}, timestamp = {Wed, 03 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Adhikari14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Farhangmehr14, author = {Farzaneh Farhangmehr}, title = {Statistical Approaches for Big Data Analytics and Machine Learning : Data-Driven Network Reconstruction and Predictive Modeling of Time Series Biological Systems}, school = {University of California, San Diego, {USA}}, year = {2014}, url = {http://www.escholarship.org/uc/item/8rd1v0m6}, timestamp = {Wed, 03 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Farhangmehr14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/PatelRajesh14, author = {Vishal Patel Rajesh}, title = {Large Scale Integration, Analysis, and Visualization of Biological Data}, school = {University of California, Irvine, {USA}}, year = {2014}, url = {http://www.escholarship.org/uc/item/2wp2m4n5}, timestamp = {Fri, 05 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/PatelRajesh14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/dnb/Kratsch14, author = {Christina Kratsch}, title = {Computational methods to study phenotype evolution and feature selection techniques for biological data under evolutionary constraints}, school = {Heinrich Heine University D{\"{u}}sseldorf}, year = {2014}, url = {http://docserv.uni-duesseldorf.de/servlets/DocumentServlet?id=32756}, urn = {urn:nbn:de:hbz:061-20141128-142159-6}, timestamp = {Sat, 17 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/dnb/Kratsch14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/dnb/Praveen14, author = {Paurush Praveen}, title = {Reverse engineering of biological signaling networks via integration of data and knowledge using probabilistic graphical models}, school = {University of Bonn}, year = {2014}, url = {http://hss.ulb.uni-bonn.de/2014/3795/3795.htm}, urn = {urn:nbn:de:hbz:5n-37952}, timestamp = {Sat, 17 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/dnb/Praveen14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/es/Moreno14, author = {Bernat Gel Moreno}, title = {Dissemination and visualisation of biological data}, school = {Polytechnic University of Catalonia, Spain}, year = {2014}, url = {http://hdl.handle.net/10803/283143}, timestamp = {Wed, 05 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/es/Moreno14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/gr/Koumakis14, author = {Lefteris Koumakis}, title = {Computational methods for knowledge discovery from heterogeneous data sources: methodology and implementation on biological and molecular sources}, school = {Technical University of Crete, Greece}, year = {2014}, url = {http://hdl.handle.net/10442/hedi/34872}, timestamp = {Wed, 17 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/gr/Koumakis14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/Yang14a, author = {Bo Yang}, title = {Bioinformatics analysis and consensus ranking for biological high throughput data. (Analyses bioinformatiques et classements consensus pour les donn{\'{e}}es biologiques {\`{a}} haut d{\'{e}}bit)}, school = {University of Paris-Sud, Orsay, France}, year = {2014}, url = {https://tel.archives-ouvertes.fr/tel-01207489}, timestamp = {Tue, 21 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/hal/Yang14a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hu/Alvarez14, author = {Roberto Vera}, title = {Large scale annotation of biological data using integrated database managament tools}, school = {P{\'{a}}zm{\'{a}}ny P{\'{e}}ter Catholic University, Hungary}, year = {2014}, url = {https://doktori.hu/index.php?menuid=193\&lang=HU\&vid=13702}, timestamp = {Mon, 22 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/hu/Alvarez14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/it/Rehman14, author = {Hafeez Ur Rehman}, title = {Integration and Analysis of Heterogeneous Biological Data}, school = {Polytechnic University of Turin, Italy}, year = {2014}, url = {https://opac.bncf.firenze.sbn.it/bncf-prod/resource?uri=BVE0655703}, timestamp = {Sat, 06 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/it/Rehman14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KouskoumvekakiSB14, author = {Irene Kouskoumvekaki and Nour Shublaq and S{\o}ren Brunak}, title = {Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics}, journal = {Briefings Bioinform.}, volume = {15}, number = {6}, pages = {942--952}, year = {2014}, url = {https://doi.org/10.1093/bib/bbt055}, doi = {10.1093/BIB/BBT055}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KouskoumvekakiSB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KurataMOT14, author = {Hiroyuki Kurata and Kazuhiro Maeda and Toshikazu Onaka and Takenori Takata}, title = {BioFNet: biological functional network database for analysis and synthesis of biological systems}, journal = {Briefings Bioinform.}, volume = {15}, number = {5}, pages = {699--709}, year = {2014}, url = {https://doi.org/10.1093/bib/bbt048}, doi = {10.1093/BIB/BBT048}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KurataMOT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/SalemO14, author = {Saeed Salem and Cagri Ozcaglar}, title = {Hybrid coexpression link similarity graph clustering for mining biological modules from multiple gene expression datasets}, journal = {BioData Min.}, volume = {7}, pages = {16}, year = {2014}, url = {https://doi.org/10.1186/1756-0381-7-16}, doi = {10.1186/1756-0381-7-16}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/SalemO14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/RakBCRA14, author = {Rafal Rak and Riza Theresa Batista{-}Navarro and Jacob Carter and Andrew Rowley and Sophia Ananiadou}, title = {Processing biological literature with customizable Web services supporting interoperable formats}, journal = {Database J. Biol. Databases Curation}, volume = {2014}, year = {2014}, url = {https://doi.org/10.1093/database/bau064}, doi = {10.1093/DATABASE/BAU064}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodb/RakBCRA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GuneyGO14, author = {Emre Guney and Javier Garc{\'{\i}}a{-}Garc{\'{\i}}a and Baldo Oliva}, title = {GUILDify: a web server for phenotypic characterization of genes through biological data integration and network-based prioritization algorithms}, journal = {Bioinform.}, volume = {30}, number = {12}, pages = {1789--1790}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu092}, doi = {10.1093/BIOINFORMATICS/BTU092}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GuneyGO14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HauswedellSR14, author = {Hannes Hauswedell and Jochen Singer and Knut Reinert}, title = {Lambda: the local aligner for massive biological data}, journal = {Bioinform.}, volume = {30}, number = {17}, pages = {349--355}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu439}, doi = {10.1093/BIOINFORMATICS/BTU439}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HauswedellSR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/IsciDOO14, author = {Senol Isci and Haluk Dogan and Cengizhan Ozturk and Hasan H. Otu}, title = {Bayesian network prior: network analysis of biological data using external knowledge}, journal = {Bioinform.}, volume = {30}, number = {6}, pages = {860--867}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btt643}, doi = {10.1093/BIOINFORMATICS/BTT643}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/IsciDOO14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/UlrichZ14, author = {Luke E. Ulrich and Igor B. Zhulin}, title = {SeqDepot: streamlined database of biological sequences and precomputed features}, journal = {Bioinform.}, volume = {30}, number = {2}, pages = {295--297}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btt658}, doi = {10.1093/BIOINFORMATICS/BTT658}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/UlrichZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biomedsem/WuFYBY14, author = {Hongyan Wu and Toyofumi Fujiwara and Yasunori Yamamoto and Jerven T. Bolleman and Atsuko Yamaguchi}, title = {BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data}, journal = {J. Biomed. Semant.}, volume = {5}, pages = {32}, year = {2014}, url = {https://doi.org/10.1186/2041-1480-5-32}, doi = {10.1186/2041-1480-5-32}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biomedsem/WuFYBY14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biosystems/HasegawaNYIM14, author = {Takanori Hasegawa and Masao Nagasaki and Rui Yamaguchi and Seiya Imoto and Satoru Miyano}, title = {An efficient method of exploring simulation models by assimilating literature and biological observational data}, journal = {Biosyst.}, volume = {121}, pages = {54--66}, year = {2014}, url = {https://doi.org/10.1016/j.biosystems.2014.06.001}, doi = {10.1016/J.BIOSYSTEMS.2014.06.001}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biosystems/HasegawaNYIM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RayWCDLLMB14, author = {William C. Ray and Samuel L. Wolock and Nicholas W. Callahan and Min Dong and Qingshun Quinn Li and Chun Liang and Thomas J. Magliery and Christopher W. Bartlett}, title = {Addressing the unmet need for visualizing conditional random fields in biological data}, journal = {{BMC} Bioinform.}, volume = {15}, pages = {202}, year = {2014}, url = {https://doi.org/10.1186/1471-2105-15-202}, doi = {10.1186/1471-2105-15-202}, timestamp = {Sun, 17 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RayWCDLLMB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Reboiro-JatoAOF14, author = {Miguel Reboiro{-}Jato and Joel Arrais and Jos{\'{e}} Lu{\'{\i}}s Oliveira and Florentino Fdez{-}Riverola}, title = {geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification}, journal = {{BMC} Bioinform.}, volume = {15}, pages = {31}, year = {2014}, url = {https://doi.org/10.1186/1471-2105-15-31}, doi = {10.1186/1471-2105-15-31}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Reboiro-JatoAOF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchweigerTP14, author = {Dominik Schweiger and Zlatko Trajanoski and Stephan Pabinger}, title = {SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases}, journal = {{BMC} Bioinform.}, volume = {15}, pages = {279}, year = {2014}, url = {https://doi.org/10.1186/1471-2105-15-279}, doi = {10.1186/1471-2105-15-279}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SchweigerTP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangPRBCL14, author = {Yun Zhang and Charles A. Phillips and Gary L. Rogers and Erich J. Baker and Elissa J. Chesler and Michael A. Langston}, title = {On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types}, journal = {{BMC} Bioinform.}, volume = {15}, pages = {110}, year = {2014}, url = {https://doi.org/10.1186/1471-2105-15-110}, doi = {10.1186/1471-2105-15-110}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangPRBCL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhaoZC14, author = {Weizhong Zhao and Wen Zou and James J. Chen}, title = {Topic modeling for cluster analysis of large biological and medical datasets}, journal = {{BMC} Bioinform.}, volume = {15}, number = {{S-11}}, pages = {S11}, year = {2014}, url = {https://doi.org/10.1186/1471-2105-15-S11-S11}, doi = {10.1186/1471-2105-15-S11-S11}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoZC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/CostaVV14, author = {Rafael S. Costa and Andr{\'{e}} Ver{\'{\i}}ssimo and Susana Vinga}, title = {KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems}, journal = {{BMC} Syst. Biol.}, volume = {8}, pages = {85}, year = {2014}, url = {https://doi.org/10.1186/s12918-014-0085-3}, doi = {10.1186/S12918-014-0085-3}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/CostaVV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/ShigemitsuYOKGYIS14, author = {Ryuji Shigemitsu and Nobuhiro Yoda and Toru Ogawa and Tetsuo Kawata and Yoshinori Gunji and Yuki Yamakawa and Kiyohiro Ikeda and Keiichi Sasaki}, title = {Biological-data-based finite-element stress analysis of mandibular bone with implant-supported overdenture}, journal = {Comput. Biol. Medicine}, volume = {54}, pages = {44--52}, year = {2014}, url = {https://doi.org/10.1016/j.compbiomed.2014.08.018}, doi = {10.1016/J.COMPBIOMED.2014.08.018}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/ShigemitsuYOKGYIS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cga/CarpendaleCEGGHRSS14, author = {Sheelagh Carpendale and Min Chen and Daniel Evanko and Nils Gehlenborg and Carsten G{\"{o}}rg and Lawrence Hunter and Francis Rowland and Margaret{-}Anne D. Storey and Hendrik Strobelt}, title = {Ontologies in Biological Data Visualization}, journal = {{IEEE} Computer Graphics and Applications}, volume = {34}, number = {2}, pages = {8--15}, year = {2014}, url = {https://doi.org/10.1109/MCG.2014.33}, doi = {10.1109/MCG.2014.33}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cga/CarpendaleCEGGHRSS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cga/MachirajuGO14, author = {Raghu Machiraju and Carsten G{\"{o}}rg and Arthur J. Olson}, title = {Visual Analytics for Biological Data}, journal = {{IEEE} Computer Graphics and Applications}, volume = {34}, number = {2}, pages = {24--25}, year = {2014}, url = {https://doi.org/10.1109/MCG.2014.38}, doi = {10.1109/MCG.2014.38}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cga/MachirajuGO14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cogcom/MalikHW14, author = {Zeeshan Khawar Malik and Amir Hussain and Q. M. Jonathan Wu}, title = {Novel Biologically Inspired Approaches to Extracting Online Information from Temporal Data}, journal = {Cogn. Comput.}, volume = {6}, number = {3}, pages = {595--607}, year = {2014}, url = {https://doi.org/10.1007/s12559-014-9257-0}, doi = {10.1007/S12559-014-9257-0}, timestamp = {Tue, 25 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cogcom/MalikHW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/concurrency/SpampinatoKAPGF14, author = {Concetto Spampinato and Isaak Kavasidis and Marco Aldinucci and Carmelo Pino and Daniela Giordano and Alberto Faro}, title = {Discovering biological knowledge by integrating high-throughput data and scientific literature on the cloud}, journal = {Concurr. Comput. Pract. Exp.}, volume = {26}, number = {10}, pages = {1771--1786}, year = {2014}, url = {https://doi.org/10.1002/cpe.3130}, doi = {10.1002/CPE.3130}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/concurrency/SpampinatoKAPGF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/evi/ThomasJ14, author = {Spencer Angus Thomas and Yaochu Jin}, title = {Reconstructing biological gene regulatory networks: where optimization meets big data}, journal = {Evol. Intell.}, volume = {7}, number = {1}, pages = {29--47}, year = {2014}, url = {https://doi.org/10.1007/s12065-013-0098-7}, doi = {10.1007/S12065-013-0098-7}, timestamp = {Thu, 16 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/evi/ThomasJ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/LiC14, author = {Yixue Li and Luonan Chen}, title = {Big Biological Data: Challenges and Opportunities}, journal = {Genom. Proteom. Bioinform.}, volume = {12}, number = {5}, pages = {187--189}, year = {2014}, url = {https://doi.org/10.1016/j.gpb.2014.10.001}, doi = {10.1016/J.GPB.2014.10.001}, timestamp = {Thu, 20 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/gpb/LiC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/gpb/LiaoZGZ14, author = {Ruiqi Liao and Yifan Zhang and Jihong Guan and Shuigeng Zhou}, title = {CloudNMF: {A} MapReduce Implementation of Nonnegative Matrix Factorization for Large-scale Biological Datasets}, journal = {Genom. Proteom. Bioinform.}, volume = {12}, number = {1}, pages = {48--51}, year = {2014}, url = {https://doi.org/10.1016/j.gpb.2013.06.001}, doi = {10.1016/J.GPB.2013.06.001}, timestamp = {Thu, 20 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/gpb/LiaoZGZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ibmrd/NguyenMTP14, author = {Hoan Nguyen and L. Michel and Julie Dawn Thompson and Olivier Poch}, title = {Heterogeneous biological data integration with declarative query language}, journal = {{IBM} J. Res. Dev.}, volume = {58}, number = {2/3}, year = {2014}, url = {https://doi.org/10.1147/JRD.2014.2309032}, doi = {10.1147/JRD.2014.2309032}, timestamp = {Wed, 12 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ibmrd/NguyenMTP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijkdb/Tzanis14, author = {George Tzanis}, title = {Biological and Medical Big Data Mining}, journal = {Int. J. Knowl. Discov. Bioinform.}, volume = {4}, number = {1}, pages = {42--56}, year = {2014}, url = {https://doi.org/10.4018/ijkdb.2014010104}, doi = {10.4018/IJKDB.2014010104}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijkdb/Tzanis14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijon/FanCSW14, author = {Weiwei Fan and Bolin Chen and Gopalan Selvaraj and Fang{-}Xiang Wu}, title = {Discovering biological patterns from short time-series gene expression profiles with integrating {PPI} data}, journal = {Neurocomputing}, volume = {145}, pages = {3--13}, year = {2014}, url = {https://doi.org/10.1016/j.neucom.2014.02.068}, doi = {10.1016/J.NEUCOM.2014.02.068}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijon/FanCSW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbi/BaenaUCFJ14, author = {Rafael Marcos Luque Baena and Daniel Urda and M. Gonzalo Claros and Leonardo Franco and Jos{\'{e}} M. Jerez}, title = {Robust gene signatures from microarray data using genetic algorithms enriched with biological pathway keywords}, journal = {J. Biomed. Informatics}, volume = {49}, pages = {32--44}, year = {2014}, url = {https://doi.org/10.1016/j.jbi.2014.01.006}, doi = {10.1016/J.JBI.2014.01.006}, timestamp = {Tue, 16 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jbi/BaenaUCFJ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/FiannacaRFGRU14, author = {Antonino Fiannaca and Massimo La Rosa and Giuseppe Di Fatta and Salvatore Gaglio and Riccardo Rizzo and Alfonso Urso}, title = {The BioDICE Taverna plugin for clustering and visualization of biological data: a workflow for molecular compounds exploration}, journal = {J. Cheminformatics}, volume = {6}, number = {1}, pages = {24}, year = {2014}, url = {https://doi.org/10.1186/1758-2946-6-24}, doi = {10.1186/1758-2946-6-24}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/FiannacaRFGRU14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KleinKKMS14, author = {Karsten Klein and Oliver Koch and Nils M. Kriege and Petra Mutzel and Till Sch{\"{a}}fer}, title = {Scaffold hunter: visual analysis of biological activity data}, journal = {J. Cheminformatics}, volume = {6}, number = {{S-1}}, pages = {33}, year = {2014}, url = {https://doi.org/10.1186/1758-2946-6-S1-P33}, doi = {10.1186/1758-2946-6-S1-P33}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/KleinKKMS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/QabajaAAA14, author = {Ala Qabaja and Mohammed Alshalalfa and Eisa Alanazi and Reda Alhajj}, title = {Prediction of novel drug indications using network driven biological data prioritization and integration}, journal = {J. Cheminformatics}, volume = {6}, number = {1}, pages = {1}, year = {2014}, url = {https://doi.org/10.1186/1758-2946-6-1}, doi = {10.1186/1758-2946-6-1}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/QabajaAAA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcp/FardoosJF14, author = {Asma Fardoos and Jamshaid Iqbal Janjua and Amjad Farooq}, title = {Ontology Engineering Techniques for Biological Data}, journal = {J. Comput.}, volume = {9}, number = {9}, pages = {2151--2158}, year = {2014}, url = {http://www.jcomputers.us/index.php?m=content\&c=index\&a=show\&catid=51\&id=567}, doi = {10.4304/JCP.9.9.2151-2158}, timestamp = {Thu, 25 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcp/FardoosJF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BhattacharyaZC14, author = {Anindya Bhattacharya and Jesse D. Ziebarth and Yan Cui}, title = {PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {86--91}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt1028}, doi = {10.1093/NAR/GKT1028}, timestamp = {Mon, 25 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/BhattacharyaZC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BrekerGMS14, author = {Michal Breker and Melissa Gymrek and Ofer Moldavski and Maya Schuldiner}, title = {LoQAtE - Localization and Quantitation ATlas of the yeast proteomE. {A} new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {726--730}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt933}, doi = {10.1093/NAR/GKT933}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BrekerGMS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MaiettaLCPLVT14, author = {Paolo Maietta and Gonzalo L{\'{o}}pez and Angel Carro and Benjamin J. Pingilley and Leticia G. Leon and Alfonso Valencia and Michael L. Tress}, title = {FireDB: a compendium of biological and pharmacologically relevant ligands}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {267--272}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt1127}, doi = {10.1093/NAR/GKT1127}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/MaiettaLCPLVT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SeilerPSHSSFAPSTFL14, author = {Catherine Y. Seiler and Jin G. Park and Amit Sharma and Preston Hunter and Padmini Surapaneni and Casey Sedillo and James Field and Rhys Algar and Andrea Price and Jason Steel and Andrea Throop and Michael Fiacco and Joshua LaBaer}, title = {{DNASU} plasmid and {PSI:} Biology-Materials repositories: resources to accelerate biological research}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {1253--1260}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt1060}, doi = {10.1093/NAR/GKT1060}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SeilerPSHSSFAPSTFL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/TurkarslanWWJBFRNB14, author = {Serdar Turkarslan and Elisabeth J. Wurtmann and Wei{-}Ju Wu and Ning Jiang and J. Christopher Bare and Karen Foley and David J. Reiss and Pavel S. Novichkov and Nitin S. Baliga}, title = {Network portal: a database for storage, analysis and visualization of biological networks}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {184--190}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt1190}, doi = {10.1093/NAR/GKT1190}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/TurkarslanWWJBFRNB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/netmahib/BegumA14, author = {Salma Begum and Ramazan Savas Ayg{\"{u}}n}, title = {Greedy hierarchical binary classifiers for multi-class classification of biological data}, journal = {Netw. Model. Anal. Health Informatics Bioinform.}, volume = {3}, number = {1}, year = {2014}, url = {https://doi.org/10.1007/s13721-014-0053-2}, doi = {10.1007/S13721-014-0053-2}, timestamp = {Tue, 08 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/netmahib/BegumA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/netmahib/NagiB14, author = {Sajid Nagi and Dhruba K. Bhattacharyya}, title = {Cluster analysis of cancer data using semantic similarity, sequence similarity and biological measures}, journal = {Netw. Model. Anal. Health Informatics Bioinform.}, volume = {3}, number = {1}, year = {2014}, url = {https://doi.org/10.1007/s13721-014-0067-9}, doi = {10.1007/S13721-014-0067-9}, timestamp = {Tue, 08 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/netmahib/NagiB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/staeors/QiMHL14, author = {Lin Qi and Ronghua Ma and Weiping Hu and Steven Arthur Loiselle}, title = {Assimilation of {MODIS} Chlorophyll-a Data Into a Coupled Hydrodynamic-Biological Model of Taihu Lake}, journal = {{IEEE} J. Sel. Top. Appl. Earth Obs. Remote. Sens.}, volume = {7}, number = {5}, pages = {1623--1631}, year = {2014}, url = {https://doi.org/10.1109/JSTARS.2013.2280815}, doi = {10.1109/JSTARS.2013.2280815}, timestamp = {Tue, 31 Mar 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/staeors/QiMHL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/amcc/LinT14, author = {Xiao Lin and Gabriel Terejanu}, title = {Model-driven data collection for biological systems}, booktitle = {American Control Conference, {ACC} 2014, Portland, OR, USA, June 4-6, 2014}, pages = {2524--2529}, publisher = {{IEEE}}, year = {2014}, url = {https://doi.org/10.1109/ACC.2014.6859268}, doi = {10.1109/ACC.2014.6859268}, timestamp = {Sun, 08 Aug 2021 01:40:57 +0200}, biburl = {https://dblp.org/rec/conf/amcc/LinT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/apn/BordonMM14, author = {Jure Bordon and Miha Moskon and Miha Mraz}, editor = {Monika Heiner}, title = {Overcoming unknown kinetic data for quantitative modelling of biological systems using fuzzy logic and Petri nets}, booktitle = {Proceedings of the 5th International Workshop on Biological Processes {\&} Petri Nets co-located with 35th International Conference on Application and Theory of Petri Nets and Concurreny {(PETRI} {NETS} 2014), Tunis, Tunisia, June 23, 2014}, series = {{CEUR} Workshop Proceedings}, volume = {1159}, pages = {3--14}, publisher = {CEUR-WS.org}, year = {2014}, url = {https://ceur-ws.org/Vol-1159/paper2.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:38 +0100}, biburl = {https://dblp.org/rec/conf/apn/BordonMM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/McDermott14, author = {Jason E. McDermott}, editor = {Pierre Baldi and Wei Wang}, title = {Promises and challenges in analysis of biological big data}, booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational Biology, and Health Informatics, {BCB} '14, Newport Beach, California, USA, September 20-23, 2014}, pages = {680}, publisher = {{ACM}}, year = {2014}, url = {https://doi.org/10.1145/2649387.2660825}, doi = {10.1145/2649387.2660825}, timestamp = {Tue, 03 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bcb/McDermott14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/WestA14, author = {Sean West and Hesham H. Ali}, editor = {Pierre Baldi and Wei Wang}, title = {On the impact of data integration and edge enrichment in mining significant signals from biological networks}, booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational Biology, and Health Informatics, {BCB} '14, Newport Beach, California, USA, September 20-23, 2014}, pages = {760--767}, publisher = {{ACM}}, year = {2014}, url = {https://doi.org/10.1145/2649387.2660846}, doi = {10.1145/2649387.2660846}, timestamp = {Fri, 11 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/WestA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/KimHZ14, author = {Chang Sik Kim and Seungwoo Hwang and Shu{-}Dong Zhang}, editor = {Huiru Jane Zheng and Werner Dubitzky and Xiaohua Hu and Jin{-}Kao Hao and Daniel P. Berrar and Kwang{-}Hyun Cho and Yadong Wang and David R. Gilbert}, title = {{RMA} with quantile normalization mixes biological signals between different sample groups in microarray data analysis}, booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014}, pages = {139--143}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/BIBM.2014.6999142}, doi = {10.1109/BIBM.2014.6999142}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/KimHZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdataconf/ShahGRL14, author = {Asmi H. Shah and Gayathri Gopalakrishnan and Adithya Rajendran and Urban Liebel}, editor = {Jimmy Lin and Jian Pei and Xiaohua Hu and Wo Chang and Raghunath Nambiar and Charu C. Aggarwal and Nick Cercone and Vasant G. Honavar and Jun Huan and Bamshad Mobasher and Saumyadipta Pyne}, title = {Data mining and sharing tool for high content screening large scale biological image data}, booktitle = {2014 {IEEE} International Conference on Big Data {(IEEE} BigData 2014), Washington, DC, USA, October 27-30, 2014}, pages = {1068--1076}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/BigData.2014.7004341}, doi = {10.1109/BIGDATA.2014.7004341}, timestamp = {Fri, 19 Nov 2021 16:08:20 +0100}, biburl = {https://dblp.org/rec/conf/bigdataconf/ShahGRL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cbms/GaterS14, author = {Ahmed Gater and Rahul Singh}, title = {Biological Image Indexing for Content-Based Retrieval of Drug Effects in Phenotypic Screening Data of Macroparasites}, booktitle = {2014 {IEEE} 27th International Symposium on Computer-Based Medical Systems, New York, NY, USA, May 27-29, 2014}, pages = {300--303}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/CBMS.2014.19}, doi = {10.1109/CBMS.2014.19}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cbms/GaterS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cbms/OrtunoPRV14, author = {Francisco M. Ortu{\~{n}}o Guzman and H{\'{e}}ctor Pomares and Ignacio Rojas Ruiz and Olga Valenzuela}, title = {Creation of a Database Including a Set of Biological Features Related to Protein Sequences and Their Corresponding Alignment}, booktitle = {2014 {IEEE} 27th International Symposium on Computer-Based Medical Systems, New York, NY, USA, May 27-29, 2014}, pages = {557--558}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/CBMS.2014.136}, doi = {10.1109/CBMS.2014.136}, timestamp = {Sun, 17 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cbms/OrtunoPRV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibb/BongoPE14, author = {Lars Ailo Bongo and Edvard Pedersen and Martin Ernstsen}, editor = {Clelia Di Serio and Pietro Li{\`{o}} and Alessandro Nonis and Roberto Tagliaferri}, title = {Data-Intensive Computing Infrastructure Systems for Unmodified Biological Data Analysis Pipelines}, booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics - 11th International Meeting, {CIBB} 2014, Cambridge, UK, June 26-28, 2014, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {8623}, pages = {259--272}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-24462-4\_22}, doi = {10.1007/978-3-319-24462-4\_22}, timestamp = {Wed, 25 Sep 2019 18:13:08 +0200}, biburl = {https://dblp.org/rec/conf/cibb/BongoPE14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibcb/AndonieFS14, author = {Razvan Andonie and Levente Fabry{-}Asztalos and Lucian Mircea Sasu}, title = {Bayesian {ARTMAP} prediction of biological activities for potential {HIV-1} protease inhibitors using a small molecular dataset}, booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics and Computational Biology, {CIBCB} 2014, Honolulu, HI, USA, May 21-24, 2014}, pages = {1--8}, publisher = {{IEEE}}, year = {2014}, url = {https://doi.org/10.1109/CIBCB.2014.6845505}, doi = {10.1109/CIBCB.2014.6845505}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cibcb/AndonieFS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/data/CuomoMPP14, author = {Salvatore Cuomo and Pasquale De Michele and Giovanni Ponti and Maria Rosaria Posteraro}, editor = {Markus Helfert and Andreas Holzinger and Orlando Belo and Chiara Francalanci}, title = {A Clustering-based Approach for a Finest Biological Model Generation Describing Visitor Behaviours in a Cultural Heritage Scenario}, booktitle = {{DATA} 2014 - Proceedings of 3rd International Conference on Data Management Technologies and Applications, Vienna, Austria, 29-31 August, 2014}, pages = {427--433}, publisher = {SciTePress}, year = {2014}, url = {https://doi.org/10.5220/0005144104270433}, doi = {10.5220/0005144104270433}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/data/CuomoMPP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/data/CuomoMPP14a, author = {Salvatore Cuomo and Pasquale De Michele and Giovanni Ponti and Maria Rosaria Posteraro}, editor = {Markus Helfert and Andreas Holzinger and Orlando Belo and Chiara Francalanci}, title = {Validation Approaches for a Biological Model Generation Describing Visitor Behaviours in a Cultural Heritage Scenario}, booktitle = {Data Management Technologies and Applications - Third International Conference, {DATA} 2014, Vienna, Austria, August 29-31, 2014, Revised Selected Papers}, series = {Communications in Computer and Information Science}, volume = {178}, pages = {154--168}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-25936-9\_10}, doi = {10.1007/978-3-319-25936-9\_10}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/data/CuomoMPP14a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dexaw/MhamdiM14, author = {Hanen Mhamdi and Faouzi Mhamdi}, title = {Feature Selection Methods on Biological Knowledge Discovery and Data Mining: {A} Survey}, booktitle = {25th International Workshop on Database and Expert Systems Applications, {DEXA} 2014, Munich, Germany, September 1-5, 2014}, pages = {46--50}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/DEXA.2014.26}, doi = {10.1109/DEXA.2014.26}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/dexaw/MhamdiM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dils/BrancotteRDB14, author = {Bryan Brancotte and Bastien Rance and Alain Denise and Sarah Cohen Boulakia}, editor = {Helena Galhardas and Erhard Rahm}, title = {ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data}, booktitle = {Data Integration in the Life Sciences - 10th International Conference, {DILS} 2014, Lisbon, Portugal, July 17-18, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8574}, pages = {128--142}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-08590-6\_13}, doi = {10.1007/978-3-319-08590-6\_13}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/dils/BrancotteRDB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gi/DiepenbroekGGGHKKNSTT14, author = {Michael Diepenbroek and Frank Oliver Gl{\"{o}}ckner and Peter Grobe and Anton G{\"{u}}ntsch and Robert Huber and Birgitta K{\"{o}}nig{-}Ries and Ivaylo Kostadinov and Jens Nieschulze and Bernhard Seeger and Robert Tolksdorf and Dagmar Triebel}, editor = {Erhard Pl{\"{o}}dereder and Lars Grunske and Eric Schneider and Dominik Ull}, title = {Towards an Integrated Biodiversity and Ecological Research Data Management and Archiving Platform: The German Federation for the Curation of Biological Data (GFBio)}, booktitle = {44. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Big Data - Komplexit{\"{a}}t meistern, {INFORMATIK} 2014, Stuttgart, Germany, September 22-26, 2014}, series = {{LNI}}, volume = {{P-232}}, pages = {1711--1721}, publisher = {{GI}}, year = {2014}, url = {https://dl.gi.de/handle/20.500.12116/2782}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/gi/DiepenbroekGGGHKKNSTT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hci/HondaH14, author = {Kaoru Honda and Fukuyo Honda}, editor = {Constantine Stephanidis}, title = {Changes in Biological Data during Prolonged Use of a Learning Support System and the Effects of a Rest Break}, booktitle = {{HCI} International 2014 - Posters' Extended Abstracts - International Conference, {HCI} International 2014, Heraklion, Crete, Greece, June 22-27, 2014. Proceedings, Part {II}}, series = {Communications in Computer and Information Science}, volume = {435}, pages = {455--460}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-07854-0\_79}, doi = {10.1007/978-3-319-07854-0\_79}, timestamp = {Wed, 24 May 2017 08:28:48 +0200}, biburl = {https://dblp.org/rec/conf/hci/HondaH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icdse/ArunanandNPP14, author = {T. A. Arunanand and K. A. Abdul Nazeer and Mathew J. Palakal and Meeta Pradhan}, title = {A nature-inspired hybrid Fuzzy C-means algorithm for better clustering of biological data sets}, booktitle = {International Conference on Data Science {\&} Engineering, {ICDSE} 2014, Kochi, India, August 26-28, 2014}, pages = {76--82}, publisher = {{IEEE}}, year = {2014}, url = {https://doi.org/10.1109/ICDSE.2014.6974615}, doi = {10.1109/ICDSE.2014.6974615}, timestamp = {Mon, 09 Aug 2021 14:54:01 +0200}, biburl = {https://dblp.org/rec/conf/icdse/ArunanandNPP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icisp/SakamotoDFKGPOHOKH14, author = {Joji Sakamoto and Jennifer Dumont and Laure Fauch and Sarita Keski{-}Saari and Lars Granlund and Ilkka Porali and Joni Orava and Jouni Hiltunen and Elina Oksanen and Markku Kein{\"{a}}nen and Markku Hauta{-}Kasari}, editor = {Abderrahim Elmoataz and Olivier Lezoray and Fathallah Nouboud and Driss Mammass}, title = {Natural Vision Data File Format as a New Spectral Image Format for Biological Applications}, booktitle = {Image and Signal Processing - 6th International Conference, {ICISP} 2014, Cherbourg, France, June 30 - July 2, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8509}, pages = {124--132}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-07998-1\_15}, doi = {10.1007/978-3-319-07998-1\_15}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icisp/SakamotoDFKGPOHOKH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ifip12/IoannouNSTT14, author = {Zafeiria{-}Marina Ioannou and Nikolaos Nodarakis and Spyros Sioutas and Athanasios K. Tsakalidis and Giannis Tzimas}, editor = {Lazaros S. Iliadis and Ilias Maglogiannis and Harris Papadopoulos and Spyros Sioutas and Christos Makris}, title = {Mining Biological Data on the Cloud - {A} MapReduce Approach}, booktitle = {Artificial Intelligence Applications and Innovations - {AIAI} 2014 Workshops: CoPA, MHDW, IIVC, and MT4BD, Rhodes, Greece, September 19-21, 2014. Proceedings}, series = {{IFIP} Advances in Information and Communication Technology}, volume = {437}, pages = {96--105}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44722-2\_11}, doi = {10.1007/978-3-662-44722-2\_11}, timestamp = {Sun, 02 Jun 2019 21:25:43 +0200}, biburl = {https://dblp.org/rec/conf/ifip12/IoannouNSTT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipps/WangCDLML14, author = {Lipeng Wang and Yuandong Chan and Xiaohui Duan and Haidong Lan and Xiangxu Meng and Weiguo Liu}, title = {{XSW:} Accelerating Biological Database Search on Xeon Phi}, booktitle = {2014 {IEEE} International Parallel {\&} Distributed Processing Symposium Workshops, Phoenix, AZ, USA, May 19-23, 2014}, pages = {950--957}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/IPDPSW.2014.108}, doi = {10.1109/IPDPSW.2014.108}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ipps/WangCDLML14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/NakhlaN14, author = {Zina Nakhla and Kaouther Nouira}, editor = {Ignacio Rojas and Francisco M. Ortu{\~{n}}o Guzman}, title = {Automatically building database from biological ontology}, booktitle = {International Work-Conference on Bioinformatics and Biomedical Engineering, {IWBBIO} 2014, Granada, Spain, April 7-9, 2014}, pages = {1403--1411}, publisher = {Copicentro Editorial}, year = {2014}, url = {http://iwbbio.ugr.es/2014/papers/IWBBIO\_2014\_paper\_147.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iwbbio/NakhlaN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/robio/StelzerMS14, author = {Annett Stelzer and Elmar Mair and Michael Suppa}, title = {Trail-Map: {A} scalable landmark data structure for biologically inspired range-free navigation}, booktitle = {2014 {IEEE} International Conference on Robotics and Biomimetics, {ROBIO} 2014, Bali, Indonesia, December 5-10, 2014}, pages = {2138--2145}, publisher = {{IEEE}}, year = {2014}, url = {https://doi.org/10.1109/ROBIO.2014.7090653}, doi = {10.1109/ROBIO.2014.7090653}, timestamp = {Wed, 16 Oct 2019 14:14:57 +0200}, biburl = {https://dblp.org/rec/conf/robio/StelzerMS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sebd/CaninoCGTV14, author = {Giovanni Canino and Mario Cannataro and Pietro Hiram Guzzi and Giuseppe Tradigo and Pierangelo Veltri}, editor = {Sergio Greco and Antonio Picariello}, title = {Geoanalysis of Clinical Diagnoses and Biological Analytes Data}, booktitle = {22nd Italian Symposium on Advanced Database Systems, {SEBD} 2014, Sorrento Coast, Italy, June 16-18, 2014}, pages = {53--60}, year = {2014}, timestamp = {Wed, 19 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/sebd/CaninoCGTV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/semcco/JenaDM14, author = {Manaswini Jena and Rasmita Dash and Bijan Bihari Misra}, editor = {Bijaya Ketan Panigrahi and Ponnuthurai Nagaratnam Suganthan and Swagatam Das}, title = {Biological Data Analysis Using Hybrid Functional Link Artificial Neural Network}, booktitle = {Swarm, Evolutionary, and Memetic Computing - 5th International Conference, {SEMCCO} 2014, Bhubaneswar, India, December 18-20, 2014, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {8947}, pages = {88--97}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-20294-5\_8}, doi = {10.1007/978-3-319-20294-5\_8}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/semcco/JenaDM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/lncs/HuppertzH14, author = {Berthold Huppertz and Andreas Holzinger}, editor = {Andreas Holzinger and Igor Jurisica}, title = {Biobanks - {A} Source of Large Biological Data Sets: Open Problems and Future Challenges}, booktitle = {Interactive Knowledge Discovery and Data Mining in Biomedical Informatics - State-of-the-Art and Future Challenges}, series = {Lecture Notes in Computer Science}, volume = {8401}, pages = {317--330}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-43968-5\_18}, doi = {10.1007/978-3-662-43968-5\_18}, timestamp = {Tue, 14 May 2019 10:00:55 +0200}, biburl = {https://dblp.org/rec/series/lncs/HuppertzH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/lncs/OtasekPHJ14, author = {David Otasek and Chiara Pastrello and Andreas Holzinger and Igor Jurisica}, editor = {Andreas Holzinger and Igor Jurisica}, title = {Visual Data Mining: Effective Exploration of the Biological Universe}, booktitle = {Interactive Knowledge Discovery and Data Mining in Biomedical Informatics - State-of-the-Art and Future Challenges}, series = {Lecture Notes in Computer Science}, volume = {8401}, pages = {19--33}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-43968-5\_2}, doi = {10.1007/978-3-662-43968-5\_2}, timestamp = {Sat, 24 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/lncs/OtasekPHJ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/cn/ChelliahJLHN14, author = {Vijayalakshmi Chelliah and Nick S. Juty and Camille Laibe and Henning Hermjakob and Nicolas Le Nov{\`{e}}re}, editor = {Dieter Jaeger and Ranu Jung}, title = {BioModels Database: a public repository for sharing models of biological processes}, booktitle = {Encyclopedia of Computational Neuroscience}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-1-4614-7320-6\_636-1}, doi = {10.1007/978-1-4614-7320-6\_636-1}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/reference/cn/ChelliahJLHN14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/Calderone14, author = {Alberto Calderone}, title = {Assembling biological boolean networks using manually curated databases and prediction algorithms}, journal = {CoRR}, volume = {abs/1412.1013}, year = {2014}, url = {http://arxiv.org/abs/1412.1013}, eprinttype = {arXiv}, eprint = {1412.1013}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/Calderone14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/KouzinopoulosAPM14, author = {Charalampos S. Kouzinopoulos and John{-}Alexander M. Assael and Themistoklis K. Pyrgiotis and Konstantinos G. Margaritis}, title = {A Hybrid Parallel Implementation of the Aho-Corasick and Wu-Manber Algorithms Using {NVIDIA} {CUDA} and {MPI} Evaluated on a Biological Sequence Database}, journal = {CoRR}, volume = {abs/1407.2889}, year = {2014}, url = {http://arxiv.org/abs/1407.2889}, eprinttype = {arXiv}, eprint = {1407.2889}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/KouzinopoulosAPM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/RayWCDLLMB14, author = {William C. Ray and Samuel L. Wolock and Nicholas W. Callahan and Min Dong and Qingshun Quinn Li and Chun Liang and Thomas J. Magliery and Christopher W. Bartlett}, title = {Addressing the unmet need for visualizing Conditional Random Fields in Biological Data}, journal = {CoRR}, volume = {abs/1407.2110}, year = {2014}, url = {http://arxiv.org/abs/1407.2110}, eprinttype = {arXiv}, eprint = {1407.2110}, timestamp = {Sun, 17 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/RayWCDLLMB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/Tsourakakis14b, author = {Charalampos E. Tsourakakis}, title = {Mathematical and Algorithmic Analysis of Network and Biological Data}, journal = {CoRR}, volume = {abs/1407.0375}, year = {2014}, url = {http://arxiv.org/abs/1407.0375}, eprinttype = {arXiv}, eprint = {1407.0375}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/Tsourakakis14b.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/WangZ14a, author = {Shuliang Wang and Yiping Zhao}, title = {Analyzing Large Biological Datasets with an Improved Algorithm for {MIC}}, journal = {CoRR}, volume = {abs/1403.3495}, year = {2014}, url = {http://arxiv.org/abs/1403.3495}, eprinttype = {arXiv}, eprint = {1403.3495}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/WangZ14a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/f1000research/Corpas14, author = {Manuel Corpas}, title = {The BioJS article collection of open source components for biological data visualisation}, journal = {F1000Research}, volume = {3}, pages = {56}, year = {2014}, url = {https://doi.org/10.12688/f1000research.3-56.v1}, doi = {10.12688/F1000RESEARCH.3-56.V1}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/f1000research/Corpas14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/f1000research/ScardoniTFSFL14, author = {Giovanni Scardoni and Gabriele Tosadori and Mohammed Faizan and Fausto Spoto and Franco Fabbri and Carlo Laudanna}, title = {Biological network analysis with CentiScaPe: centralities and experimental dataset integration}, journal = {F1000Research}, volume = {3}, pages = {139}, year = {2014}, url = {https://doi.org/10.12688/f1000research.4477.1}, doi = {10.12688/F1000RESEARCH.4477.1}, timestamp = {Mon, 29 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/f1000research/ScardoniTFSFL14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Jeong13, author = {Kyowon Jeong}, title = {Statistical Algorithms for High-throughput Biological Data /}, school = {University of California, San Diego, {USA}}, year = {2013}, url = {http://www.escholarship.org/uc/item/7kt5768c}, timestamp = {Tue, 15 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Jeong13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Kruczyk13, author = {Marcin Kruczyk}, title = {Rule-Based Approaches for Large Biological Datasets Analysis : {A} Suite of Tools and Methods}, school = {Uppsala University, Sweden}, year = {2013}, url = {https://nbn-resolving.org/urn:nbn:se:uu:diva-206137}, urn = {urn:nbn:se:uu:diva-206137}, timestamp = {Wed, 12 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Kruczyk13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Rashid13, author = {Naim U. Rashid}, title = {Model-based approaches for the detection of biologically active genomic regions from next generation sequencing data}, school = {University of North Carolina, Chapel Hill, {USA}}, year = {2013}, url = {https://doi.org/10.17615/ry6x-vz15}, doi = {10.17615/RY6X-VZ15}, timestamp = {Mon, 02 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Rashid13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Yuan13a, author = {Lei Yuan}, title = {Structured Sparse Learning and Its Applications to Biomedical and Biological Data}, school = {Arizona State University, Tempe, {USA}}, year = {2013}, url = {https://hdl.handle.net/2286/R.I.17864}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Yuan13a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Zhang13, author = {Yuji Zhang}, title = {Module{\_}based Analysis of Biological Data for Network Inference and Biomarker Discovery}, school = {Virginia Tech, Blacksburg, VA, {USA}}, year = {2013}, url = {https://hdl.handle.net/10919/28482}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Zhang13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/hal/AravenaDuarte13, author = {Andr{\'{e}}s Octavio Aravena Duarte}, title = {Probabilistic and constraint based modelling to determine regulation events from heterogeneous biological data. (Mod{\'{e}}lisation probabiliste ou {\`{a}} base de contraintes pour d{\'{e}}terminer des r{\'{e}}gulations {\`{a}} partir de donn{\'{e}}es biologiques h{\'{e}}t{\'{e}}rog{\`{e}}nes)}, school = {University of Rennes 1, France}, year = {2013}, url = {https://tel.archives-ouvertes.fr/tel-00988255}, timestamp = {Tue, 21 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/hal/AravenaDuarte13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/SloutskyJSN13, author = {Roman Sloutsky and Nicolas Jimenez and S. Joshua Swamidass and Kristen M. Naegle}, title = {Accounting for noise when clustering biological data}, journal = {Briefings Bioinform.}, volume = {14}, number = {4}, pages = {423--436}, year = {2013}, url = {https://doi.org/10.1093/bib/bbs057}, doi = {10.1093/BIB/BBS057}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/SloutskyJSN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bigdata/Swan13, author = {Melanie Swan}, title = {The Quantified Self: Fundamental Disruption in Big Data Science and Biological Discovery}, journal = {Big Data}, volume = {1}, number = {2}, pages = {85--99}, year = {2013}, url = {https://doi.org/10.1089/big.2012.0002}, doi = {10.1089/BIG.2012.0002}, timestamp = {Thu, 28 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bigdata/Swan13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/MalleyDM13, author = {James D. Malley and Abhijit Dasgupta and Jason H. Moore}, title = {The limits of p-values for biological data mining}, journal = {BioData Min.}, volume = {6}, pages = {10}, year = {2013}, url = {https://doi.org/10.1186/1756-0381-6-10}, doi = {10.1186/1756-0381-6-10}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/MalleyDM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/MalleyM13, author = {James D. Malley and Jason H. Moore}, title = {The disconnect between classical biostatistics and the biological data mining community}, journal = {BioData Min.}, volume = {6}, pages = {12}, year = {2013}, url = {https://doi.org/10.1186/1756-0381-6-12}, doi = {10.1186/1756-0381-6-12}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/MalleyM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/MooreR13, author = {Jason H. Moore and Marylyn D. Ritchie}, title = {The central role of biological data mining in connecting diverse disciplines}, journal = {BioData Min.}, volume = {6}, pages = {14}, year = {2013}, url = {http://www.biodatamining.org/content/6/1/14}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/MooreR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GaudetMRABCKOY13, author = {Pascale Gaudet and Monica C. Munoz{-}Torres and Marc Robinson{-}Rechavi and Teresa K. Attwood and Alex Bateman and J. Michael Cherry and Renate Kania and Claire O'Donovan and Chisato Yamasaki}, title = {DATABASE, \emph{The Journal of Biological Databases and Curation}, is now the official journal of the International Society for Biocuration}, journal = {Database J. Biol. Databases Curation}, volume = {2013}, year = {2013}, url = {https://doi.org/10.1093/database/bat077}, doi = {10.1093/DATABASE/BAT077}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/GaudetMRABCKOY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/OberlinJBF13, author = {Andrew Oberlin and Dominika A. Jurkovic and Mitchell F. Balish and Iddo Friedberg}, title = {Biological Database of Images and Genomes: tools for community annotations linking image and genomic information}, journal = {Database J. Biol. Databases Curation}, volume = {2013}, year = {2013}, url = {https://doi.org/10.1093/database/bat016}, doi = {10.1093/DATABASE/BAT016}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/OberlinJBF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/PercudaniCP13, author = {Riccardo Percudani and Davide Carnevali and Vincenzo Puggioni}, title = {Ureidoglycolate hydrolase, amidohydrolase, lyase: how errors in biological databases are incorporated in scientific papers and vice versa}, journal = {Database J. Biol. Databases Curation}, volume = {2013}, year = {2013}, url = {https://doi.org/10.1093/database/bat071}, doi = {10.1093/DATABASE/BAT071}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/PercudaniCP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CamiloBAFCML13, author = {Esther Camilo and Luiz A. Bovolenta and Marcio Luis Acencio and Jos{\'{e}} L. Rybarczyk Filho and Mauro A. A. Castro and Jos{\'{e}} C. F. Moreira and Ney Lemke}, title = {{GALANT:} a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2505--2506}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt377}, doi = {10.1093/BIOINFORMATICS/BTT377}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CamiloBAFCML13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DeckardAHHH13, author = {Anastasia Deckard and Ron C. Anafi and John B. Hogenesch and Steven B. Haase and John Harer}, title = {Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data}, journal = {Bioinform.}, volume = {29}, number = {24}, pages = {3174--3180}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt541}, doi = {10.1093/BIOINFORMATICS/BTT541}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DeckardAHHH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13, author = {John G{\'{o}}mez and Leyla J. Garc{\'{\i}}a and Gustavo A. Salazar and Jose M. Villaveces and Swanand P. Gore and Alexander Garc{\'{\i}}a Castro and Maria Jesus Martin and Guillaume Launay and Rafael Alc{\'{a}}ntara and Noemi del{-}Toro and Marine Dumousseau and Sandra E. Orchard and Sameer Velankar and Henning Hermjakob and Chenggong Zong and Peipei Ping and Manuel Corpas and Rafael C. Jim{\'{e}}nez}, title = {BioJS: an open source JavaScript framework for biological data visualization}, journal = {Bioinform.}, volume = {29}, number = {8}, pages = {1103--1104}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt100}, doi = {10.1093/BIOINFORMATICS/BTT100}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GomezGSVGGMLAdDOVHZPCJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/McClellanMSS13, author = {Elizabeth A. McClellan and Perry D. Moerland and Peter J. van der Spek and Andrew Stubbs}, title = {NetWeAvers: an \emph{R} package for integrative biological network analysis with mass spectrometry data}, journal = {Bioinform.}, volume = {29}, number = {22}, pages = {2946--2947}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt513}, doi = {10.1093/BIOINFORMATICS/BTT513}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/McClellanMSS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biosystems/LonesSTAJ13, author = {Michael A. Lones and Stephen L. Smith and Andy M. Tyrrell and Jane E. Alty and D. R. Stuart Jamieson}, title = {Characterising neurological time series data using biologically motivated networks of coupled discrete maps}, journal = {Biosyst.}, volume = {112}, number = {2}, pages = {94--101}, year = {2013}, url = {https://doi.org/10.1016/j.biosystems.2013.03.009}, doi = {10.1016/J.BIOSYSTEMS.2013.03.009}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biosystems/LonesSTAJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HaughtonB13, author = {David Haughton and F{\'{e}}lix Balado}, title = {BioCode: Two biologically compatible Algorithms for embedding data in non-coding and coding regions of {DNA}}, journal = {{BMC} Bioinform.}, volume = {14}, pages = {121}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-121}, doi = {10.1186/1471-2105-14-121}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HaughtonB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MoulosKJSBS13, author = {Panagiotis Moulos and Julie Klein and Simon Jupp and Robert Stevens and Jean{-}Loup Bascands and Joost P. Schanstra}, title = {The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases}, journal = {{BMC} Bioinform.}, volume = {14}, pages = {235}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-235}, doi = {10.1186/1471-2105-14-235}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MoulosKJSBS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PartlLSKKS13, author = {Christian Partl and Alexander Lex and Marc Streit and Denis Kalkofen and Karl Kashofer and Dieter Schmalstieg}, title = {enRoute: dynamic path extraction from biological pathway maps for exploring heterogeneous experimental datasets}, journal = {{BMC} Bioinform.}, volume = {14}, number = {{S-19}}, pages = {S3}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-S19-S3}, doi = {10.1186/1471-2105-14-S19-S3}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PartlLSKKS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SinghYDAMFGSF13, author = {Rahul Singh and Hui Yang and Ben Dalziel and Daniel Asarnow and William Murad and David Foote and Matthew Gormley and Jonathan Stillman and Susan Fisher}, title = {Towards human-computer synergetic analysis of large-scale biological data}, journal = {{BMC} Bioinform.}, volume = {14}, number = {{S-14}}, pages = {S10}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-S14-S10}, doi = {10.1186/1471-2105-14-S14-S10}, timestamp = {Wed, 08 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SinghYDAMFGSF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/VerbanckLP13, author = {Marie Verbanck and S{\'{e}}bastien L{\^{e}} and J{\'{e}}r{\^{o}}me Pag{\`{e}}s}, title = {A new unsupervised gene clustering algorithm based on the integration of biological knowledge into expression data}, journal = {{BMC} Bioinform.}, volume = {14}, pages = {42}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-42}, doi = {10.1186/1471-2105-14-42}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/VerbanckLP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WollbrettLLR13, author = {Julien Wollbrett and Pierre Larmande and Fr{\'{e}}d{\'{e}}ric de Lamotte and Manuel Ruiz}, title = {Clever generation of rich {SPARQL} queries from annotated relational schema: application to Semantic Web Service creation for biological databases}, journal = {{BMC} Bioinform.}, volume = {14}, pages = {126}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-126}, doi = {10.1186/1471-2105-14-126}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/WollbrettLLR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LiN13, author = {Yifeng Li and Alioune Ngom}, title = {Sparse representation approaches for the classification of high-dimensional biological data}, journal = {{BMC} Syst. Biol.}, volume = {7}, number = {{S-4}}, pages = {S6}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-S4-S6}, doi = {10.1186/1752-0509-7-S4-S6}, timestamp = {Mon, 28 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/LiN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/Huang13a, author = {Yao{-}Huei Huang}, title = {A note on hyper ellipse method for classifying biological and medical data}, journal = {Comput. Biol. Medicine}, volume = {43}, number = {11}, pages = {1978--1986}, year = {2013}, url = {https://doi.org/10.1016/j.compbiomed.2013.08.007}, doi = {10.1016/J.COMPBIOMED.2013.08.007}, timestamp = {Wed, 02 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/Huang13a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/ZhuLS13, author = {Xiangyuan Zhu and Kenli Li and Ahmad Salah}, title = {A data parallel strategy for aligning multiple biological sequences on multi-core computers}, journal = {Comput. Biol. Medicine}, volume = {43}, number = {4}, pages = {350--361}, year = {2013}, url = {https://doi.org/10.1016/j.compbiomed.2012.12.009}, doi = {10.1016/J.COMPBIOMED.2012.12.009}, timestamp = {Thu, 15 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/ZhuLS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/concurrency/GreenfieldR13, author = {Paul Greenfield and Uwe R{\"{o}}hm}, title = {Answering biological questions by querying k-mer databases}, journal = {Concurr. Comput. Pract. Exp.}, volume = {25}, number = {4}, pages = {497--509}, year = {2013}, url = {https://doi.org/10.1002/cpe.2938}, doi = {10.1002/CPE.2938}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/concurrency/GreenfieldR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dke/SymeonidisIMM13, author = {Panagiotis Symeonidis and Nantia D. Iakovidou and Nikolaos Mantas and Yannis Manolopoulos}, title = {From biological to social networks: Link prediction based on multi-way spectral clustering}, journal = {Data Knowl. Eng.}, volume = {87}, pages = {226--242}, year = {2013}, url = {https://doi.org/10.1016/j.datak.2013.05.008}, doi = {10.1016/J.DATAK.2013.05.008}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/dke/SymeonidisIMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/envsoft/HaimiMCV13, author = {Henri Haimi and Michela Mulas and Francesco Corona and Riku Vahala}, title = {Data-derived soft-sensors for biological wastewater treatment plants: An overview}, journal = {Environ. Model. Softw.}, volume = {47}, pages = {88--107}, year = {2013}, url = {https://doi.org/10.1016/j.envsoft.2013.05.009}, doi = {10.1016/J.ENVSOFT.2013.05.009}, timestamp = {Wed, 19 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/envsoft/HaimiMCV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/eswa/MiloneSKLC13, author = {Diego H. Milone and Georgina Stegmayer and Laura Kamenetzky and Mariana G. Lopez and Fernando Carrari}, title = {Clustering biological data with SOMs: On topology preservation in non-linear dimensional reduction}, journal = {Expert Syst. Appl.}, volume = {40}, number = {9}, pages = {3841--3845}, year = {2013}, url = {https://doi.org/10.1016/j.eswa.2012.12.074}, doi = {10.1016/J.ESWA.2012.12.074}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/eswa/MiloneSKLC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/eswa/Reboiro-JatoLLGDF13, author = {Miguel Reboiro{-}Jato and Rosal{\'{\i}}a Laza and Hugo L{\'{o}}pez{-}Fern{\'{a}}ndez and Daniel Glez{-}Pe{\~{n}}a and Fernando D{\'{\i}}az and Florentino Fdez{-}Riverola}, title = {genEnsemble: {A} new model for the combination of classifiers and integration of biological knowledge applied to genomic data}, journal = {Expert Syst. Appl.}, volume = {40}, number = {1}, pages = {52--63}, year = {2013}, url = {https://doi.org/10.1016/j.eswa.2012.07.003}, doi = {10.1016/J.ESWA.2012.07.003}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/eswa/Reboiro-JatoLLGDF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/hisas/Gong13, author = {Peng Gong}, title = {Dynamic integration of biological data sources using the data concierge}, journal = {Health Inf. Sci. Syst.}, volume = {1}, number = {1}, pages = {7}, year = {2013}, url = {https://doi.org/10.1186/2047-2501-1-7}, doi = {10.1186/2047-2501-1-7}, timestamp = {Tue, 04 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/hisas/Gong13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/Iam-onBGP13, author = {Natthakan Iam{-}on and Tossapon Boongoen and Simon M. Garrett and Chris J. Price}, title = {New cluster ensemble approach to integrative biological data analysis}, journal = {Int. J. Data Min. Bioinform.}, volume = {8}, number = {2}, pages = {150--168}, year = {2013}, url = {https://doi.org/10.1504/IJDMB.2013.055495}, doi = {10.1504/IJDMB.2013.055495}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijdmb/Iam-onBGP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/LiuLY13, author = {I{-}Hsin Liu and Yu{-}Shu Lo and Jinn{-}Moon Yang}, title = {Template-based scoring functions for visualising biological insights of H-2K\({}^{\mbox{b}}\)-peptide-TCR complexes}, journal = {Int. J. Data Min. Bioinform.}, volume = {8}, number = {3}, pages = {326--337}, year = {2013}, url = {https://doi.org/10.1504/IJDMB.2013.056079}, doi = {10.1504/IJDMB.2013.056079}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijdmb/LiuLY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/YuWLSW13, author = {Yang Yu and Xiaolong Wang and Lei Lin and Chengjie Sun and Xuan Wang}, title = {A supervised approach to detect protein complex by combining biological and topological properties}, journal = {Int. J. Data Min. Bioinform.}, volume = {8}, number = {1}, pages = {105--121}, year = {2013}, url = {https://doi.org/10.1504/IJDMB.2013.054700}, doi = {10.1504/IJDMB.2013.054700}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/YuWLSW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijitn/Saedy13, author = {Mahdy Saedy}, title = {Biologically Inspired Networks: On Energy Efficient Event-Driven Data Collection for Wireless Sensor Networks}, journal = {Int. J. Interdiscip. Telecommun. Netw.}, volume = {5}, number = {1}, pages = {14--25}, year = {2013}, url = {https://doi.org/10.4018/jitn.2013010102}, doi = {10.4018/JITN.2013010102}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijitn/Saedy13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ivs/JusufiKS13, author = {Ilir Jusufi and Andreas Kerren and Falk Schreiber}, title = {Exploring biological data: Mappings between ontology- and cluster-based representations}, journal = {Inf. Vis.}, volume = {12}, number = {3-4}, pages = {291--307}, year = {2013}, url = {https://doi.org/10.1177/1473871612468880}, doi = {10.1177/1473871612468880}, timestamp = {Thu, 24 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ivs/JusufiKS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jaciii/HashikamiTHHSN13, author = {Hidenobu Hashikami and Takanari Tanabata and Fumiaki Hirose and Nur Hasanah and Kazuhito Sawase and Hajime Nobuhara}, title = {An Algorithm for Recomputing Concepts in Microarray Data Analysis by Biological Lattice}, journal = {J. Adv. Comput. Intell. Intell. Informatics}, volume = {17}, number = {5}, pages = {761--771}, year = {2013}, url = {https://doi.org/10.20965/jaciii.2013.p0761}, doi = {10.20965/JACIII.2013.P0761}, timestamp = {Tue, 16 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jaciii/HashikamiTHHSN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/WangHDN13, author = {Hua Wang and Heng Huang and Chris H. Q. Ding and Feiping Nie}, title = {Predicting Protein-Protein Interactions from Multimodal Biological Data Sources via Nonnegative Matrix Tri-Factorization}, journal = {J. Comput. Biol.}, volume = {20}, number = {4}, pages = {344--358}, year = {2013}, url = {https://doi.org/10.1089/cmb.2012.0273}, doi = {10.1089/CMB.2012.0273}, timestamp = {Wed, 10 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/WangHDN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jclinbioinf/SilvestreZBBMM13, author = {Dario Silvestre and Italo Zoppis and Francesca Brambilla and Valeria Bellettato and Giancarlo Mauri and Pierluigi Mauri}, title = {Availability of MudPIT data for classification of biological samples}, journal = {J. Clin. Bioinform.}, volume = {3}, pages = {1}, year = {2013}, url = {https://doi.org/10.1186/2043-9113-3-1}, doi = {10.1186/2043-9113-3-1}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jclinbioinf/SilvestreZBBMM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/kybernetes/BaridamA13, author = {Barile{\'{e}} B. Baridam and M. Montaz Ali}, title = {An investigation of K-means clustering to high and multi-dimensional biological data}, journal = {Kybernetes}, volume = {42}, number = {4}, pages = {614--627}, year = {2013}, url = {https://doi.org/10.1108/K-02-2013-0028}, doi = {10.1108/K-02-2013-0028}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/kybernetes/BaridamA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AndreiniCLR13, author = {Claudia Andreini and Gabriele Cavallaro and Serena Lorenzini and Antonio Rosato}, title = {MetalPDB: a database of metal sites in biological macromolecular structures}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {312--319}, year = {2013}, url = {https://doi.org/10.1093/nar/gks1063}, doi = {10.1093/NAR/GKS1063}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/AndreiniCLR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HastingsMDEHKMOTWS13, author = {Janna Hastings and Paula de Matos and Adriano Dekker and Marcus Ennis and Bhavana Harsha and Namrata Kale and Venkatesh Muthukrishnan and Gareth I. Owen and Steve Turner and Mark Williams and Christoph Steinbeck}, title = {The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {456--463}, year = {2013}, url = {https://doi.org/10.1093/nar/gks1146}, doi = {10.1093/NAR/GKS1146}, timestamp = {Fri, 24 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/HastingsMDEHKMOTWS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/YangRZ13, author = {Jianyi Yang and Ambrish Roy and Yang Zhang}, title = {BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {1096--1103}, year = {2013}, url = {https://doi.org/10.1093/nar/gks966}, doi = {10.1093/NAR/GKS966}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/YangRZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/DemirBRAFGSBS13, author = {Emek Demir and {\"{O}}zg{\"{u}}n Babur and Igor V. Rodchenkov and B{\"{u}}lent Arman Aksoy and Ken I. Fukuda and Benjamin E. Gross and Sel{\c{c}}uk Onur S{\"{u}}mer and Gary D. Bader and Chris Sander}, title = {Using Biological Pathway Data with Paxtools}, journal = {PLoS Comput. Biol.}, volume = {9}, number = {9}, year = {2013}, url = {https://doi.org/10.1371/journal.pcbi.1003194}, doi = {10.1371/JOURNAL.PCBI.1003194}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/DemirBRAFGSBS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PastrelloOFACSJ13, author = {Chiara Pastrello and David Otasek and Kristen Fortney and Giuseppe Agapito and Mario Cannataro and Elize Shirdel and Igor Jurisica}, title = {Visual Data Mining of Biological Networks: One Size Does Not Fit All}, journal = {PLoS Comput. Biol.}, volume = {9}, number = {1}, year = {2013}, url = {https://doi.org/10.1371/journal.pcbi.1002833}, doi = {10.1371/JOURNAL.PCBI.1002833}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/PastrelloOFACSJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/scfbm/LiN13, author = {Yifeng Li and Alioune Ngom}, title = {The non-negative matrix factorization toolbox for biological data mining}, journal = {Source Code Biol. Medicine}, volume = {8}, pages = {10}, year = {2013}, url = {https://doi.org/10.1186/1751-0473-8-10}, doi = {10.1186/1751-0473-8-10}, timestamp = {Mon, 28 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/scfbm/LiN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tbe/HsuL13, author = {Ying Hsu and Andreas A. Linninger}, title = {Quantitative Integration of Biological, Pharmacokinetic, and Medical Imaging Data for Organ-Wide Dose-Response Predictions}, journal = {{IEEE} Trans. Biomed. Eng.}, volume = {60}, number = {3}, pages = {625--632}, year = {2013}, url = {https://doi.org/10.1109/TBME.2013.2244893}, doi = {10.1109/TBME.2013.2244893}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tbe/HsuL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tbe/PapoutsoglouB13, author = {George S. Papoutsoglou and Costas Balas}, title = {Estimation of Neoplasia-Related Biological Parameters Through Modeling and Sensitivity Analysis of Optical Molecular Imaging Data}, journal = {{IEEE} Trans. Biomed. Eng.}, volume = {60}, number = {5}, pages = {1241--1249}, year = {2013}, url = {https://doi.org/10.1109/TBME.2012.2231863}, doi = {10.1109/TBME.2012.2231863}, timestamp = {Wed, 02 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tbe/PapoutsoglouB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/LiN13, author = {Yifeng Li and Alioune Ngom}, title = {Nonnegative Least-Squares Methods for the Classification of High-Dimensional Biological Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {10}, number = {2}, pages = {447--456}, year = {2013}, url = {https://doi.org/10.1109/TCBB.2013.30}, doi = {10.1109/TCBB.2013.30}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/LiN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/Humeau-HeurtierAM13, author = {Anne Humeau{-}Heurtier and Pierre Abraham and Guillaume Mah{\'{e}}}, title = {Linguistic Analysis of Laser Speckle Contrast Images Recorded at Rest and During Biological Zero: Comparison With Laser Doppler Flowmetry Data}, journal = {{IEEE} Trans. Medical Imaging}, volume = {32}, number = {12}, pages = {2311--2321}, year = {2013}, url = {https://doi.org/10.1109/TMI.2013.2281620}, doi = {10.1109/TMI.2013.2281620}, timestamp = {Wed, 13 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tmi/Humeau-HeurtierAM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/aina/DemongeotHGT13, author = {Jacques Demongeot and Ali Hamie and Antonio Glar{\'{\i}}a and Carla Taramasco}, editor = {Leonard Barolli and Fatos Xhafa and Makoto Takizawa and Tomoya Enokido and Hui{-}Huang Hsu}, title = {Dynalets: {A} New Representation of Periodic Biological Signals and Spectral Data}, booktitle = {27th International Conference on Advanced Information Networking and Applications Workshops, {WAINA} 2013, Barcelona, Spain, March 25-28, 2013}, pages = {1525--1532}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://doi.org/10.1109/WAINA.2013.174}, doi = {10.1109/WAINA.2013.174}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/aina/DemongeotHGT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/amcc/LiZ13, author = {Xiaobo Li and Mingjun Zhang}, title = {Hybrid time-data-driven control for biological cellular systems}, booktitle = {American Control Conference, {ACC} 2013, Washington, DC, USA, June 17-19, 2013}, pages = {1507--1512}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/ACC.2013.6580049}, doi = {10.1109/ACC.2013.6580049}, timestamp = {Sun, 08 Aug 2021 01:40:56 +0200}, biburl = {https://dblp.org/rec/conf/amcc/LiZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ant/RezaeiMCS13, author = {Navid Rezaei and Deyasini Majumdar and Bruce F. Cockburn and Christian Schlegel}, editor = {Elhadi M. Shakshuki and Karim Djouani and Michael Sheng and Mohamed F. Younis and Eduardo Vaz and Wayne Groszko}, title = {Electromagnetic Energy and Data Transfer in Biological Tissues Using Loop Antennas}, booktitle = {Proceedings of the 4th International Conference on Ambient Systems, Networks and Technologies {(ANT} 2013), the 3rd International Conference on Sustainable Energy Information Technology (SEIT-2013), Halifax, Nova Scotia, Canada, June 25-28, 2013}, series = {Procedia Computer Science}, volume = {19}, pages = {908--913}, publisher = {Elsevier}, year = {2013}, url = {https://doi.org/10.1016/j.procs.2013.06.124}, doi = {10.1016/J.PROCS.2013.06.124}, timestamp = {Fri, 28 Jan 2022 08:58:39 +0100}, biburl = {https://dblp.org/rec/conf/ant/RezaeiMCS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibe/MingaGVSHSMC13, author = {Evangelia Minga and Athanasios Gkoufas and Anna Vardi and Evangelia Stalika and Anastasia Hadzidimitriou and Kostas Stamatopoulos and Nicos Maglaveras and Ioanna Chouvarda}, title = {Towards an integrated framework for clinico-biological data management and analysis: The case of Chronic Lymphocytic Leukemia}, booktitle = {13th {IEEE} International Conference on BioInformatics and BioEngineering, {BIBE} 2013, Chania, Greece, November 10-13, 2013}, pages = {1--4}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://doi.org/10.1109/BIBE.2013.6701690}, doi = {10.1109/BIBE.2013.6701690}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibe/MingaGVSHSMC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/LiuDPDMCW13, author = {Sheng Liu and Shamitha Dissanayake and Sanjay Patel and Xin Dang and Todd Mlsna and Yixin Chen and Dawn Wilkins}, editor = {Guo{-}Zheng Li and Sunghoon Kim and Michael Hughes and Geoffrey J. McLachlan and Hongye Sun and Xiaohua Hu and Habtom W. Ressom and Baoyan Liu and Michael N. Liebman}, title = {Rule based regression and feature selection for biological data}, booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine, Shanghai, China, December 18-21, 2013}, pages = {446--451}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://doi.org/10.1109/BIBM.2013.6732533}, doi = {10.1109/BIBM.2013.6732533}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/LiuDPDMCW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/PodpecanMPSGML13, author = {Vid Podpecan and Dragana Miljkovic and Marko Petek and Tjasa Stare and Kristina Gruden and Igor Mozetic and Nada Lavrac}, editor = {Guo{-}Zheng Li and Sunghoon Kim and Michael Hughes and Geoffrey J. McLachlan and Hongye Sun and Xiaohua Hu and Habtom W. Ressom and Baoyan Liu and Michael N. Liebman}, title = {Integrating semantic transcriptomic data analysis and knowledge extraction from biological literature}, booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine, Shanghai, China, December 18-21, 2013}, pages = {477--480}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://doi.org/10.1109/BIBM.2013.6732540}, doi = {10.1109/BIBM.2013.6732540}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/PodpecanMPSGML13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cec/SilvaRA13, author = {Reslley Gabriel Oliveira Silva and Marcos Wagner de Souza Ribeiro and Laurence Rodrigues do Amaral}, title = {Building high level knowledge from high dimensionality biological dataset {(NCI60)} using Genetic Algorithms and feature selection strategies}, booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC} 2013, Cancun, Mexico, June 20-23, 2013}, pages = {578--583}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/CEC.2013.6557620}, doi = {10.1109/CEC.2013.6557620}, timestamp = {Wed, 16 Oct 2019 14:14:52 +0200}, biburl = {https://dblp.org/rec/conf/cec/SilvaRA13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibb/DessiPMP13, author = {Nicoletta Dess{\`{\i}} and Emanuele Pascariello and Gabriele Milia and Barbara Pes}, editor = {Enrico Formenti and Roberto Tagliaferri and Ernst Wit}, title = {BioCloud Search EnGene: Surfing Biological Data on the Cloud}, booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics - 10th International Meeting, {CIBB} 2013, Nice, France, June 20-22, 2013, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {8452}, pages = {33--48}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-09042-9\_3}, doi = {10.1007/978-3-319-09042-9\_3}, timestamp = {Tue, 14 May 2019 10:00:54 +0200}, biburl = {https://dblp.org/rec/conf/cibb/DessiPMP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cse/ToniniS13, author = {Gustavo Tonini and Frank Siqueira}, title = {A Distributed Data Allocation Algorithm for Biological Databases}, booktitle = {16th {IEEE} International Conference on Computational Science and Engineering, {CSE} 2013, December 3-5, 2013, Sydney, Australia}, pages = {531--537}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://doi.org/10.1109/CSE.2013.85}, doi = {10.1109/CSE.2013.85}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cse/ToniniS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dexaw/BakhtinaFJ13, author = {Uliana Bakhtina and Dirk Fleischer and Kai Jannaschk}, editor = {Franck Morvan and A Min Tjoa and Roland R. Wagner}, title = {Application of Systematic Data Mining for Prediction of Biological Quality Indices}, booktitle = {24th International Workshop on Database and Expert Systems Applications, {DEXA} 2013, Prague, Czech Republic, August 26-29, 2013}, pages = {95--99}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://doi.org/10.1109/DEXA.2013.41}, doi = {10.1109/DEXA.2013.41}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/dexaw/BakhtinaFJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eScience/CuglerMST13, author = {Daniel Cintra Cugler and Claudia Bauzer Medeiros and Shashi Shekhar and Lu{\'{\i}}s Felipe Toledo}, title = {A Geographical Approach for Metadata Quality Improvement in Biological Observation Databases}, booktitle = {9th {IEEE} International Conference on eScience, eScience 2013, Beijing, China, October 22-25, 2013}, pages = {212--220}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://doi.org/10.1109/eScience.2013.14}, doi = {10.1109/ESCIENCE.2013.14}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/eScience/CuglerMST13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/BosioSBO13, author = {Mattia Bosio and Philippe Salembier and Pau Bellot and Albert Oliveras{-}Verg{\'{e}}s}, title = {Hierarchical clustering combining numerical and biological similarities for gene expression data classification}, booktitle = {35th Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society, {EMBC} 2013, Osaka, Japan, July 3-7, 2013}, pages = {584--587}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/EMBC.2013.6609567}, doi = {10.1109/EMBC.2013.6609567}, timestamp = {Wed, 16 Oct 2019 14:14:50 +0200}, biburl = {https://dblp.org/rec/conf/embc/BosioSBO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eucc/GonzalezUSCBF13, author = {Andres M. Gonzalez and Jannis Uhlendorf and Joe Schaul and Eugenio Cinquemani and Gr{\'{e}}gory Batt and Giancarlo Ferrari{-}Trecate}, title = {Identification of biological models from single-cell data: {A} comparison between mixed-effects and moment-based inference}, booktitle = {12th European Control Conference, {ECC} 2013, Zurich, Switzerland, July 17-19, 2013}, pages = {3652--3657}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.23919/ECC.2013.6669366}, doi = {10.23919/ECC.2013.6669366}, timestamp = {Mon, 09 Aug 2021 14:54:02 +0200}, biburl = {https://dblp.org/rec/conf/eucc/GonzalezUSCBF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hci/RychlikSM13, author = {Michal Rychlik and Witold Stankiewicz and Marek Morzynski}, editor = {Constantine Stephanidis}, title = {Biological Objects Data Registration Algorithm for Modal (Low Dimensional) Analysis}, booktitle = {{HCI} International 2013 - Posters' Extended Abstracts - International Conference, {HCI} International 2013, Las Vegas, NV, USA, July 21-26, 2013, Proceedings, Part {I}}, series = {Communications in Computer and Information Science}, volume = {373}, pages = {655--659}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-39473-7\_130}, doi = {10.1007/978-3-642-39473-7\_130}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/hci/RychlikSM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/Altintas13, author = {Ilkay Altintas}, title = {Workflow-driven programming paradigms for distributed analysis of biological big data}, booktitle = {{IEEE} 3rd International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2013, New Orleans, LA, USA, June 12-14, 2013}, pages = {1}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://doi.org/10.1109/ICCABS.2013.6629243}, doi = {10.1109/ICCABS.2013.6629243}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/Altintas13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iciap/CarlettiFV13, author = {Vincenzo Carletti and Pasquale Foggia and Mario Vento}, editor = {Alfredo Petrosino and Lucia Maddalena and Pietro Pala}, title = {Performance Comparison of Five Exact Graph Matching Algorithms on Biological Databases}, booktitle = {New Trends in Image Analysis and Processing - {ICIAP} 2013 - {ICIAP} 2013 International Workshops, Naples, Italy, September 9-13, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8158}, pages = {409--417}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-41190-8\_44}, doi = {10.1007/978-3-642-41190-8\_44}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iciap/CarlettiFV13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmla/WaldKSN13, author = {Randall Wald and Taghi M. Khoshgoftaar and Ahmad Abu Shanab and Amri Napolitano}, title = {Comparative Analysis on the Stability of Feature Selection Techniques Using Three Frameworks on Biological Datasets}, booktitle = {12th International Conference on Machine Learning and Applications, {ICMLA} 2013, Miami, FL, USA, December 4-7, 2013, Volume 1}, pages = {418--423}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/ICMLA.2013.85}, doi = {10.1109/ICMLA.2013.85}, timestamp = {Wed, 16 Oct 2019 14:14:53 +0200}, biburl = {https://dblp.org/rec/conf/icmla/WaldKSN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iimss/MaekawaMKK13, author = {Yasuko Maekawa and Yukie Majima and Tsuneo Kawano and Mako Katagiri}, editor = {George A. Tsihrintzis and Maria Virvou and Toyohide Watanabe and Lakhmi C. Jain and Robert J. Howlett}, title = {Characteristics of Practical Nursing Knowledge from Biological Data}, booktitle = {Intelligent Interactive Multimedia Systems and Services - Proceedings of the 6th International Conference on Intelligent Interactive Multimedia Systems and Services, {IIMSS} 2013, Sesimbra, Portugal, 26-28 June 2013}, series = {Frontiers in Artificial Intelligence and Applications}, volume = {254}, pages = {251--260}, publisher = {{IOS} Press}, year = {2013}, url = {https://doi.org/10.3233/978-1-61499-262-2-251}, doi = {10.3233/978-1-61499-262-2-251}, timestamp = {Wed, 17 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iimss/MaekawaMKK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/Pareja-TobesPMPT13, author = {Pablo Pareja{-}Tobes and Eduardo Pareja{-}Tobes and Marina Manrique and Eduardo Pareja and Raquel Tobes}, editor = {Ignacio Rojas and Francisco M. Ortu{\~{n}}o Guzman}, title = {Bio4J: An Open source biological data integration platform}, booktitle = {International Work-Conference on Bioinformatics and Biomedical Engineering, {IWBBIO} 2013, Granada, Spain, March 18-20, 2013. Proceedings}, pages = {281}, publisher = {Copicentro Editorial}, year = {2013}, url = {http://iwbbio.ugr.es/papers/iwbbio\_051.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iwbbio/Pareja-TobesPMPT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miwai/AhmadY13, author = {Farzana Kabir Ahmad and Nooraini Yusoff}, editor = {Sheela Ramanna and Pawan Lingras and Chattrakul Sombattheera and Aneesh Krishna}, title = {Reconstructing Gene Regulatory Network Using Heterogeneous Biological Data}, booktitle = {Multi-disciplinary Trends in Artificial Intelligence - 7th International Workshop, {MIWAI} 2013, Krabi, Thailand, December 9-11, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8271}, pages = {97--107}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-44949-9\_10}, doi = {10.1007/978-3-642-44949-9\_10}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miwai/AhmadY13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/prib/LiN13, author = {Yifeng Li and Alioune Ngom}, editor = {Alioune Ngom and Enrico Formenti and Jin{-}Kao Hao and Xing{-}Ming Zhao and Twan van Laarhoven}, title = {Versatile Sparse Matrix Factorization and Its Applications in High-Dimensional Biological Data Analysis}, booktitle = {Pattern Recognition in Bioinformatics - 8th {IAPR} International Conference, {PRIB} 2013, Nice, France, June 17-20, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7986}, pages = {91--101}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-39159-0\_9}, doi = {10.1007/978-3-642-39159-0\_9}, timestamp = {Mon, 28 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/prib/LiN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/TranCZ13, author = {Ngoc Hieu Tran and Kwok Pui Choi and Louxin Zhang}, editor = {Minghua Deng and Rui Jiang and Fengzhu Sun and Xuegong Zhang}, title = {Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data - (Extended Abstract)}, booktitle = {Research in Computational Molecular Biology - 17th Annual International Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7821}, pages = {269--270}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-37195-0\_24}, doi = {10.1007/978-3-642-37195-0\_24}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/TranCZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sac/TripletB13, author = {Thomas Triplet and Gregory Butler}, editor = {Sung Y. Shin and Jos{\'{e}} Carlos Maldonado}, title = {BenchDW: a generic framework for biological data warehouse benchmarking}, booktitle = {Proceedings of the 28th Annual {ACM} Symposium on Applied Computing, {SAC} '13, Coimbra, Portugal, March 18-22, 2013}, pages = {1328--1334}, publisher = {{ACM}}, year = {2013}, url = {https://doi.org/10.1145/2480362.2480612}, doi = {10.1145/2480362.2480612}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/sac/TripletB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/vmls-ws/LeittePRSW13, author = {Heike Leitte and Julia Portl and Ira V. R{\"{o}}der and Rasmus R. Schr{\"{o}}der and Irene U. Wacker}, editor = {Lars Linsen and Hans{-}Christian Hege and Bernd Hamann}, title = {Towards a Structured Analysis of Quantitative Descriptors from Segmented Biological Image Data}, booktitle = {3rd International Workshop on Visualization in Medicine and Life Sciences, VMLS@EuroVis 2013 - Short Papers, Leipzig, Germany, June 16-18, 2013}, publisher = {Eurographics Association}, year = {2013}, url = {https://doi.org/10.2312/PE.VMLS.VMLS2013.025-029}, doi = {10.2312/PE.VMLS.VMLS2013.025-029}, timestamp = {Sat, 12 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/vmls-ws/LeittePRSW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wob/NiidaTIM13, author = {Atsushi Niida and Georg Tremmel and Seiya Imoto and Satoru Miyano}, editor = {Jo{\~{a}}o C. Setubal and Nalvo F. Almeida}, title = {Multilayer Cluster Heat Map Visualizing Biological Tensor Data}, booktitle = {Advances in Bioinformatics and Computational Biology - 8th Brazilian Symposium on Bioinformatics, {BSB} 2013, Recife, Brazil, November 3-7, 2013, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8213}, pages = {116--125}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02624-4\_11}, doi = {10.1007/978-3-319-02624-4\_11}, timestamp = {Tue, 14 May 2019 10:00:50 +0200}, biburl = {https://dblp.org/rec/conf/wob/NiidaTIM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/crc/aggarwal13/ReddyHZ13, author = {Chandan K. Reddy and Mohammad Al Hasan and Mohammed J. Zaki}, editor = {Charu C. Aggarwal and Chandan K. Reddy}, title = {Clustering Biological Data}, booktitle = {Data Clustering: Algorithms and Applications}, pages = {381--414}, publisher = {{CRC} Press}, year = {2013}, timestamp = {Thu, 12 Mar 2020 11:24:04 +0100}, biburl = {https://dblp.org/rec/books/crc/aggarwal13/ReddyHZ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/biovis/2013, title = {{IEEE} Symposium on Biological Data Visualization, BioVis 2013, Atlanta, GA, USA, October 13-14, 2013}, publisher = {{IEEE} Computer Society}, year = {2013}, url = {https://ieeexplore.ieee.org/xpl/conhome/6648474/proceeding}, isbn = {978-1-4799-1658-0}, timestamp = {Wed, 16 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/biovis/2013.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Gaire12, author = {Raj K. Gaire}, title = {Effective integration of diverse biological datasets for better understanding of cancer}, school = {University of Melbourne, Australia}, year = {2012}, url = {https://hdl.handle.net/11343/37430}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Gaire12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Wirth12, author = {Henry Wirth}, title = {Analysis of large-scale molecular biological data using self-organizing maps}, school = {Leipzig University, Germany}, year = {2012}, url = {https://nbn-resolving.org/urn:nbn:de:bsz:15-qucosa-101298}, urn = {urn:nbn:de:bsz:15-qucosa-101298}, timestamp = {Fri, 12 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Wirth12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/dnb/Blank12, author = {Sebastian Blank}, title = {A Biological Inspired Approach for Sensor Data Management in Modular Agricultural Machines}, school = {University of Kaiserslautern}, year = {2012}, url = {http://www.dr.hut-verlag.de/978-3-8439-0758-3.html}, urn = {urn:nbn:de:101:1-201301046612}, timestamp = {Sat, 17 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/dnb/Blank12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/tr/Korkmaz12, author = {G{\"{u}}lberal Kir{\c{c}}i{\c{c}}egi Yoksul Korkmaz}, title = {Mining microarray data for biologically important gene sets (Biyolojik {\"{o}}nem ta{\c{s}}{\i}yan gen listelerinin bulunmas{\i} i{\c{c}}in mikrodizi veri madencili{\u{g}}i)}, school = {Middle East Technical University, Turkey}, year = {2012}, url = {https://tez.yok.gov.tr/UlusalTezMerkezi/tezDetay.jsp?id=2ueLXGxYUzhVHcggQAheXA\&no=W\_xSq9GmyCV1hxHxdMLnQg}, timestamp = {Sun, 19 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/tr/Korkmaz12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/abi/Al-ShalalfaBA12, author = {Mohammed Al{-}Shalalfa and Tarek A. Bismar and Reda Alhajj}, title = {Detecting Cancer Outlier Genes with Potential Rearrangement Using Gene Expression Data and Biological Networks}, journal = {Adv. Bioinformatics}, volume = {2012}, pages = {373506:1--373506:13}, year = {2012}, url = {https://doi.org/10.1155/2012/373506}, doi = {10.1155/2012/373506}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/abi/Al-ShalalfaBA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/VingaCFRA12, author = {Susana Vinga and Alexandra M. Carvalho and Alexandre P. Francisco and Lu{\'{\i}}s M. S. Russo and Jonas S. Almeida}, title = {Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis}, journal = {Algorithms Mol. Biol.}, volume = {7}, pages = {10}, year = {2012}, url = {https://doi.org/10.1186/1748-7188-7-10}, doi = {10.1186/1748-7188-7-10}, timestamp = {Mon, 16 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/almob/VingaCFRA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/BebekKPC12, author = {G{\"{u}}rkan Bebek and Mehmet Koyut{\"{u}}rk and Nathan D. Price and Mark R. Chance}, title = {Network biology methods integrating biological data for translational science}, journal = {Briefings Bioinform.}, volume = {13}, number = {4}, pages = {446--459}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr075}, doi = {10.1093/BIB/BBR075}, timestamp = {Thu, 03 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/BebekKPC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/GuzziMGC12, author = {Pietro Hiram Guzzi and Marco Mina and Concettina Guerra and Mario Cannataro}, title = {Semantic similarity analysis of protein data: assessment with biological features and issues}, journal = {Briefings Bioinform.}, volume = {13}, number = {5}, pages = {569--585}, year = {2012}, url = {https://doi.org/10.1093/bib/bbr066}, doi = {10.1093/BIB/BBR066}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/GuzziMGC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/NeveolWL12, author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and W. John Wilbur and Zhiyong Lu}, title = {Improving links between literature and biological data with text mining: a case study with GEO, {PDB} and {MEDLINE}}, journal = {Database J. Biol. Databases Curation}, volume = {2012}, year = {2012}, url = {https://doi.org/10.1093/database/bas026}, doi = {10.1093/DATABASE/BAS026}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/NeveolWL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChangKLC12, author = {Darby Tien{-}Hao Chang and Chao{-}Hsuan Ke and Jung{-}Hsin Lin and Jung{-}Hsien Chiang}, title = {AutoBind: automatic extraction of protein-ligand-binding affinity data from biological literature}, journal = {Bioinform.}, volume = {28}, number = {16}, pages = {2162--2168}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts367}, doi = {10.1093/BIOINFORMATICS/BTS367}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChangKLC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GlausHR12, author = {Peter Glaus and Antti Honkela and Magnus Rattray}, title = {Identifying differentially expressed transcripts from RNA-seq data with biological variation}, journal = {Bioinform.}, volume = {28}, number = {13}, pages = {1721--1728}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts260}, doi = {10.1093/BIOINFORMATICS/BTS260}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GlausHR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SmithABCCHLLKRSSWWM12, author = {Richard N. Smith and Jelena Aleksic and Daniela Butano and Adrian Carr and Sergio Contrino and Fengyuan Hu and Mike Lyne and Rachel Lyne and Alex Kalderimis and Kim Rutherford and Radek Stepan and Julie M. Sullivan and Matthew Wakeling and Xavier Watkins and Gos Micklem}, title = {InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data}, journal = {Bioinform.}, volume = {28}, number = {23}, pages = {3163--3165}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts577}, doi = {10.1093/BIOINFORMATICS/BTS577}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SmithABCCHLLKRSSWWM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangLZH12, author = {Haitian Wang and Shaw{-}Hwa Lo and Tian Zheng and Inchi Hu}, title = {Interaction-based feature selection and classification for high-dimensional biological data}, journal = {Bioinform.}, volume = {28}, number = {21}, pages = {2834--2842}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts531}, doi = {10.1093/BIOINFORMATICS/BTS531}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangLZH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biomedsem/SamadianMW12, author = {Soroush Samadian and Bruce McManus and Mark D. Wilkinson}, title = {Extending and encoding existing biological terminologies and datasets for use in the reasoned semantic web}, journal = {J. Biomed. Semant.}, volume = {3}, pages = {6}, year = {2012}, url = {https://doi.org/10.1186/2041-1480-3-6}, doi = {10.1186/2041-1480-3-6}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biomedsem/SamadianMW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BartlettCHPLJBVHNSAR12, author = {Christopher W. Bartlett and Soo Yeon Cheong and Liping Hou and Jesse Paquette and Pek Yee Lum and G{\"{u}}nter J{\"{a}}ger and Florian Battke and Corinna Vehlow and Julian Heinrich and Kay Nieselt and Ryo Sakai and Jan Aerts and William C. Ray}, title = {An eQTL biological data visualization challenge and approaches from the visualization community}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-8}}, pages = {S8}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S8-S8}, doi = {10.1186/1471-2105-13-S8-S8}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BartlettCHPLJBVHNSAR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DibC12, author = {Linda Dib and Alessandra Carbone}, title = {{CLAG:} an unsupervised non hierarchical clustering algorithm handling biological data}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {194}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-194}, doi = {10.1186/1471-2105-13-194}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/DibC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/EronenT12, author = {Lauri Eronen and Hannu Toivonen}, title = {Biomine: predicting links between biological entities using network models of heterogeneous databases}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {119}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-119}, doi = {10.1186/1471-2105-13-119}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/EronenT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HolfordMCK12, author = {Matthew Holford and Jamie P. McCusker and Kei{-}Hoi Cheung and Michael Krauthammer}, title = {A semantic web framework to integrate cancer omics data with biological knowledge}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-1}}, pages = {S10}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S1-S10}, doi = {10.1186/1471-2105-13-S1-S10}, timestamp = {Thu, 16 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/HolfordMCK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KennedyR12, author = {Jessie Kennedy and Jos B. T. M. Roerdink}, title = {Highlights of the 1st {IEEE} Symposium on Biological Data Visualization}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-8}}, pages = {S1}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S8-S1}, doi = {10.1186/1471-2105-13-S8-S1}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KennedyR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KhanFMPKPKWK12, author = {Suleiman A. Khan and Ali Faisal and John Mpindi and Juuso A. Parkkinen and Tuomo Kalliokoski and Antti Poso and Olli{-}P. Kallioniemi and Krister Wennerberg and Samuel Kaski}, title = {Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {112}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-112}, doi = {10.1186/1471-2105-13-112}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KhanFMPKPKWK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MironovSBASK12, author = {Vladimir Mironov and Nirmala Seethappan and Ward Blond{\'{e}} and Erick Antezana and Andrea Splendiani and Martin Kuiper}, title = {Gauging triple stores with actual biological data}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-1}}, pages = {S3}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S1-S3}, doi = {10.1186/1471-2105-13-S1-S3}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/MironovSBASK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SallouBR12, author = {Olivier Sallou and Anthony Bretaudeau and Aurelien Roult}, title = {Seqcrawler: biological data indexing and browsing platform}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {175}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-175}, doi = {10.1186/1471-2105-13-175}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SallouBR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SchonbachTCBTR12, author = {Christian Sch{\"{o}}nbach and Sissades Tongsima and Jonathan H. Chan and Vladimir Brusic and Tin Wee Tan and Shoba Ranganathan}, title = {InCoB2012 Conference: from biological data to knowledge to technological breakthroughs}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-17}}, pages = {S1}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S17-S1}, doi = {10.1186/1471-2105-13-S17-S1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SchonbachTCBTR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TchagangPFSFHZHCLP12, author = {Alain B. Tchagang and Sieu Phan and Fazel Famili and Heather Shearer and Pierre R. Fobert and Yi Huang and Jitao Zou and Daiqing Huang and Adrian Cutler and Ziying Liu and Youlian Pan}, title = {Mining biological information from 3D short time-series gene expression data: the OPTricluster algorithm}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {54}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-54}, doi = {10.1186/1471-2105-13-54}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/TchagangPFSFHZHCLP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/YaoCC12, author = {Fangzhou Yao and Jeff Coquery and Kim{-}Anh L{\^{e}} Cao}, title = {Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {24}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-24}, doi = {10.1186/1471-2105-13-24}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/YaoCC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/LoRDZSBY12, author = {Kenneth Lo and Adrian E. Raftery and Kenneth M. Dombek and Jun Zhu and Eric E. Schadt and Roger Eugene Bumgarner and Ka Yee Yeung}, title = {Integrating external biological knowledge in the construction of regulatory networks from time-series expression data}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {101}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-101}, doi = {10.1186/1752-0509-6-101}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/LoRDZSBY12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/MartinTSDMWPHP12, author = {Florian Martin and Ty M. Thomson and Alain Sewer and David A. Drubin and Carole Mathis and Dirk Weisensee and Dexter Pratt and Julia Hoeng and Manuel C. Peitsch}, title = {Assessment of network perturbation amplitudes by applying high-throughput data to causal biological networks}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {54}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-54}, doi = {10.1186/1752-0509-6-54}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/MartinTSDMWPHP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/YangW12, author = {Tzu{-}Hsien Yang and Wei{-}Sheng Wu}, title = {Identifying biologically interpretable transcription factor knockout targets by jointly analyzing the transcription factor knockout microarray and the ChIP-chip data}, journal = {{BMC} Syst. Biol.}, volume = {6}, pages = {102}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-102}, doi = {10.1186/1752-0509-6-102}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/YangW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cim/StegmayerGM12, author = {Georgina Stegmayer and Matias Gerard and Diego H. Milone}, title = {Data Mining Over Biological Datasets: An Integrated Approach Based on Computational Intelligence}, journal = {{IEEE} Comput. Intell. Mag.}, volume = {7}, number = {4}, pages = {22--34}, year = {2012}, url = {https://doi.org/10.1109/MCI.2012.2215122}, doi = {10.1109/MCI.2012.2215122}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cim/StegmayerGM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmmm/LiL12a, author = {Hui Li and Chunmei Liu}, title = {A Dynamic Data-Driven Framework for Biological Data Using 2D Barcodes}, journal = {Comput. Math. Methods Medicine}, volume = {2012}, pages = {892098:1--892098:5}, year = {2012}, url = {https://doi.org/10.1155/2012/892098}, doi = {10.1155/2012/892098}, timestamp = {Sat, 25 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cmmm/LiL12a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmpb/LambertMMB12, author = {Ronald J. W. Lambert and Ioannis Mytilinaios and Luke Maitland and Angus M. Brown}, title = {Monte Carlo simulation of parameter confidence intervals for non-linear regression analysis of biological data using Microsoft Excel}, journal = {Comput. Methods Programs Biomed.}, volume = {107}, number = {2}, pages = {155--163}, year = {2012}, url = {https://doi.org/10.1016/j.cmpb.2011.05.009}, doi = {10.1016/J.CMPB.2011.05.009}, timestamp = {Thu, 20 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cmpb/LambertMMB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/datamine/LiHDK12, author = {Zhenhui Li and Jiawei Han and Bolin Ding and Roland Kays}, title = {Mining periodic behaviors of object movements for animal and biological sustainability studies}, journal = {Data Min. Knowl. Discov.}, volume = {24}, number = {2}, pages = {355--386}, year = {2012}, url = {https://doi.org/10.1007/s10618-011-0227-9}, doi = {10.1007/S10618-011-0227-9}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/datamine/LiHDK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ecoi/MichenerABCDFKKTV12, author = {William K. Michener and Suzie Allard and Amber E. Budden and Robert B. Cook and Kimberly Douglass and Mike Frame and Steve Kelling and Rebecca Koskela and Carol Tenopir and David Vieglais}, title = {Participatory design of DataONE - Enabling cyberinfrastructure for the biological and environmental sciences}, journal = {Ecol. Informatics}, volume = {11}, pages = {5--15}, year = {2012}, url = {https://doi.org/10.1016/j.ecoinf.2011.08.007}, doi = {10.1016/J.ECOINF.2011.08.007}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ecoi/MichenerABCDFKKTV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/hac/HastonCH12, author = {Elspeth Haston and Robert Cubey and David J. Harris}, title = {Data concepts and their relevance for data capture in large scale digitisation of biological collections}, journal = {Int. J. Humanit. Arts Comput.}, volume = {6}, number = {1-2}, pages = {111--119}, year = {2012}, url = {https://doi.org/10.3366/ijhac.2012.0042}, doi = {10.3366/IJHAC.2012.0042}, timestamp = {Wed, 27 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/hac/HastonCH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/QinG12, author = {Guimin Qin and Lin Gao}, title = {An algorithm for network motif discovery in biological networks}, journal = {Int. J. Data Min. Bioinform.}, volume = {6}, number = {1}, pages = {1--16}, year = {2012}, url = {https://doi.org/10.1504/IJDMB.2012.045533}, doi = {10.1504/IJDMB.2012.045533}, timestamp = {Mon, 08 Nov 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijdmb/QinG12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/Reboiro-JatoGDF12, author = {Miguel Reboiro{-}Jato and Daniel Glez{-}Pe{\~{n}}a and Fernando D{\'{\i}}az and Florentino Fdez{-}Riverola}, title = {A novel ensemble approach for multicategory classification of {DNA} microarray data using biological relevant gene sets}, journal = {Int. J. Data Min. Bioinform.}, volume = {6}, number = {6}, pages = {602--616}, year = {2012}, url = {https://doi.org/10.1504/IJDMB.2012.050267}, doi = {10.1504/IJDMB.2012.050267}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/Reboiro-JatoGDF12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BolserCPGJASBGSHREBESPCRBB12, author = {Dan M. Bolser and Pierre{-}Yves Chibon and Nicolas Palopoli and Sungsam Gong and Daniel Jacob and Victoria Dominguez Del Angel and Daniel Swan and Sebastian Bassi and Virginia Gonz{\'{a}}lez and Prashanth Suravajhala and Seungwoo Hwang and Paolo Romano and Rob Edwards and Bryan Bishop and John Eargle and Timur Shtatland and Nicholas J. Provart and Dave Clements and Daniel P. Renfro and Daeui Park and Jong Bhak}, title = {MetaBase - the wiki-database of biological databases}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {1250--1254}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr1099}, doi = {10.1093/NAR/GKR1099}, timestamp = {Fri, 30 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/BolserCPGJASBGSHREBESPCRBB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KelderIHKCEP12, author = {Thomas Kelder and Martijn P. van Iersel and Kristina Hanspers and Martina Kutmon and Bruce R. Conklin and Chris T. A. Evelo and Alexander R. Pico}, title = {WikiPathways: building research communities on biological pathways}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {1301--1307}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr1074}, doi = {10.1093/NAR/GKR1074}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KelderIHKCEP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SchneiderJ12, author = {Maria Victoria Schneider and Rafael C. Jim{\'{e}}nez}, title = {Teaching the Fundamentals of Biological Data Integration Using Classroom Games}, journal = {PLoS Comput. Biol.}, volume = {8}, number = {12}, year = {2012}, url = {https://doi.org/10.1371/journal.pcbi.1002789}, doi = {10.1371/JOURNAL.PCBI.1002789}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/SchneiderJ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sadm/ZhuWJL12, author = {Xiangxin Zhu and Max Welling and Fang Jin and John S. Lowengrub}, title = {Predicting simulation parameters of biological systems using a Gaussian process model}, journal = {Stat. Anal. Data Min.}, volume = {5}, number = {6}, pages = {509--522}, year = {2012}, url = {https://doi.org/10.1002/sam.11163}, doi = {10.1002/SAM.11163}, timestamp = {Thu, 01 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/sadm/ZhuWJL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/siamam/KimF12, author = {Jae Kyoung Kim and Daniel B. Forger}, title = {On the Existence and Uniqueness of Biological Clock Models Matching Experimental Data}, journal = {{SIAM} J. Appl. Math.}, volume = {72}, number = {6}, pages = {1842--1855}, year = {2012}, url = {https://doi.org/10.1137/120867809}, doi = {10.1137/120867809}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/siamam/KimF12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sighit/CeciGMCMMFMP12, author = {Michelangelo Ceci and Pietro Hiram Guzzi and Elio Masciari and Mauro Coluccia and Federica Mandreoli and Massimo Mecella and Fabio Fumarola and Riccardo Martoglia and Wilma Penzo}, title = {The IS-BioBank project: a framework for biological data normalization, interoperability, and mining for cancer microenvironment analysis}, journal = {{SIGHIT} Rec.}, volume = {2}, number = {2}, pages = {16--21}, year = {2012}, url = {https://doi.org/10.1145/2384556.2384558}, doi = {10.1145/2384556.2384558}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/sighit/CeciGMCMMFMP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sp/HasanHCZ12, author = {Mohammad Al Hasan and Jun Huan and Jake Yue Chen and Mohammed J. Zaki}, title = {Biological knowledge discovery and data mining}, journal = {Sci. Program.}, volume = {20}, number = {1}, pages = {1--2}, year = {2012}, url = {https://doi.org/10.3233/SPR-2012-0337}, doi = {10.3233/SPR-2012-0337}, timestamp = {Wed, 06 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/sp/HasanHCZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AnsariBVD12, author = {Nadeem Ansari and Riyue Bao and Calin Voichita and Sorin Draghici}, title = {Detecting Phenotype-Specific Interactions between Biological Processes from Microarray Data and Annotations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {5}, pages = {1399--1409}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2012.65}, doi = {10.1109/TCBB.2012.65}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AnsariBVD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/CampelloMS12, author = {Ricardo J. G. B. Campello and Davoud Moulavi and J{\"{o}}rg Sander}, title = {A Simpler and More Accurate {AUTO-HDS} Framework for Clustering and Visualization of Biological Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {6}, pages = {1850--1852}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2012.115}, doi = {10.1109/TCBB.2012.115}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/CampelloMS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/NounouNMDD12, author = {Mohamed N. Nounou and Hazem N. Nounou and Nader Meskin and Aniruddha Datta and Edward R. Dougherty}, title = {Multiscale Denoising of Biological Data: {A} Comparative Analysis}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {5}, pages = {1539--1545}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2012.67}, doi = {10.1109/TCBB.2012.67}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcbb/NounouNMDD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/StegmayerMKLC12, author = {Georgina Stegmayer and Diego H. Milone and Laura Kamenetzky and Mariana G. Lopez and Fernando Carrari}, title = {A Biologically Inspired Validity Measure for Comparison of Clustering Methods over Metabolic Data Sets}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {3}, pages = {706--716}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2012.10}, doi = {10.1109/TCBB.2012.10}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/StegmayerMKLC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/widm/LiuWZ12, author = {Li{-}Zhi Liu and Fang{-}Xiang Wu and Wen{-}Jun Zhang}, title = {Reverse engineering of gene regulatory networks from biological data}, journal = {WIREs Data Mining Knowl. Discov.}, volume = {2}, number = {5}, pages = {365--385}, year = {2012}, url = {https://doi.org/10.1002/widm.1068}, doi = {10.1002/WIDM.1068}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/widm/LiuWZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/widm/Vital-LopezMD12, author = {Francisco G. Vital{-}Lopez and Vesna Memisevic and Bhaskar Dutta}, title = {Tutorial on biological networks}, journal = {WIREs Data Mining Knowl. Discov.}, volume = {2}, number = {4}, pages = {298--325}, year = {2012}, url = {https://doi.org/10.1002/widm.1061}, doi = {10.1002/WIDM.1061}, timestamp = {Fri, 21 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/widm/Vital-LopezMD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/HillSS12, author = {Steven Hill and Bismita Srichandan and Rajshekhar Sunderraman}, editor = {Sanjay Ranka and Tamer Kahveci and Mona Singh}, title = {An iterative MapReduce approach to frequent subgraph mining in biological datasets}, booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012}, pages = {661--666}, publisher = {{ACM}}, year = {2012}, url = {https://doi.org/10.1145/2382936.2383055}, doi = {10.1145/2382936.2383055}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bcb/HillSS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/JiangC12, author = {Hao Jiang and Wai{-}Ki Ching}, title = {The role of Eigen-matrix translation in classification of biological datasets}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012}, pages = {1--4}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBM.2012.6392701}, doi = {10.1109/BIBM.2012.6392701}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/JiangC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/LeeS12a, author = {Hyokyeong Lee and Rahul Singh}, title = {Unsupervised kernel parameter estimation by constrained nonlinear optimization for clustering nonlinear biological data}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012}, pages = {1--6}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBM.2012.6392694}, doi = {10.1109/BIBM.2012.6392694}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/LeeS12a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/LiN12, author = {Yifeng Li and Alioune Ngom}, title = {Fast sparse representation approaches for the classification of high-dimensional biological data}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012}, pages = {1--6}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBM.2012.6392688}, doi = {10.1109/BIBM.2012.6392688}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/LiN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/MesaVK12, author = {Liliana Marcela Olarte Mesa and Luis Fernando Ni{\~{n}}o Vasquez and Liliana L{\'{o}}pez Kleine}, title = {Identification and analysis of gene clusters in biological data}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012}, pages = {551--557}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBMW.2012.6470199}, doi = {10.1109/BIBMW.2012.6470199}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/MesaVK12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biovis/PartlKLKSS12, author = {Christian Partl and Denis Kalkofen and Alexander Lex and Karl Kashofer and Marc Streit and Dieter Schmalstieg}, title = {enRoute: Dynamic path extraction from biological pathway maps for in-depth experimental data analysis}, booktitle = {2012 {IEEE} Symposium on Biological Data Visualization, BioVis 2011, Seattle, WA, USA, October 14-15, 2012}, pages = {107--114}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BioVis.2012.6378600}, doi = {10.1109/BIOVIS.2012.6378600}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/biovis/PartlKLKSS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cbms/SpampinatoGKM12, author = {Concetto Spampinato and Daniela Giordano and Isaak Kavasidis and Sebastiano Milardo}, editor = {Paolo Soda and Francesco Tortorella and Sameer K. Antani and Mykola Pechenizkiy and Mario Cannataro and Alexey Tsymbal}, title = {BioWizard: Discovering and validating associations between biological entities by integrated analysis of scientific literature and experimental data}, booktitle = {Proceedings of {CBMS} 2012, The 25th {IEEE} International Symposium on Computer-Based Medical Systems, June 20-22, 2012, Rome, Italy}, pages = {1--6}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/CBMS.2012.6266327}, doi = {10.1109/CBMS.2012.6266327}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cbms/SpampinatoGKM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cikm/Song12, author = {Min Song}, editor = {Doheon Kim and Sophia Ananiadou and Min Song and Hua Xu}, title = {Session details: Mining biological data and text}, booktitle = {Proceedings of the {ACM} sixth international workshop on Data and text mining in biomedical informatics, DTMBIO@CIKM 2012, Maui, Hawaii, USA, October 29, 2012}, pages = {1}, publisher = {{ACM}}, year = {2012}, url = {https://doi.org/10.1145/3260182}, doi = {10.1145/3260182}, timestamp = {Fri, 28 Jun 2019 14:26:06 +0200}, biburl = {https://dblp.org/rec/conf/cikm/Song12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/colognetwente/PhillipsJBCL12, author = {Charles A. Phillips and Jeremy J. Jay and Erich J. Baker and Elissa J. Chesler and Michael A. Langston}, editor = {Andreas Brieden and Zafer{-}Korcan G{\"{o}}rg{\"{u}}l{\"{u}} and Tino Krug and Erik Kropat and Silja Meyer{-}Nieberg and Goran Mihelcic and Stefan Wolfgang Pickl}, title = {On Bipartite Graph Decomposition in the Presence of Noise, with Applications to Biological Data Clustering}, booktitle = {11th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, Munich, Germany, May 29-31, 2012. Extended Abstracts}, pages = {215--219}, year = {2012}, timestamp = {Thu, 16 May 2013 15:41:40 +0200}, biburl = {https://dblp.org/rec/conf/colognetwente/PhillipsJBCL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/edbt/AltintasWCL12, author = {Ilkay Altintas and Jianwu Wang and Daniel Crawl and Weizhong Li}, editor = {Divesh Srivastava and Ismail Ari}, title = {Challenges and approaches for distributed workflow-driven analysis of large-scale biological data: vision paper}, booktitle = {Proceedings of the 2012 Joint {EDBT/ICDT} Workshops, Berlin, Germany, March 30, 2012}, pages = {73--78}, publisher = {{ACM}}, year = {2012}, url = {https://doi.org/10.1145/2320765.2320791}, doi = {10.1145/2320765.2320791}, timestamp = {Fri, 30 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/edbt/AltintasWCL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/embc/Dimitrakopoulos12, author = {Georgios N. Dimitrakopoulos and Kyriakos N. Sgarbas and Konstantina Dimitrakopoulou and Andrei Dragomir and Anastasios Bezerianos and Ioannis A. Maraziotis}, title = {Multi-scale modeling of gene regulatory networks via integration of temporal and topological biological data}, booktitle = {Annual International Conference of the {IEEE} Engineering in Medicine and Biology Society, {EMBC} 2012, San Diego, CA, USA, August 28 - September 1, 2012}, pages = {1242--1245}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/EMBC.2012.6346162}, doi = {10.1109/EMBC.2012.6346162}, timestamp = {Sat, 02 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/embc/Dimitrakopoulos12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/evoW/HolzingerDFFCR12, author = {Emily Rose Holzinger and Scott M. Dudek and Alex T. Frase and Brooke L. Fridley and Prabhakar Chalise and Marylyn D. Ritchie}, editor = {Mario Giacobini and Leonardo Vanneschi and William S. Bush}, title = {Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets}, booktitle = {Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics - 10th European Conference, EvoBIO 2012, M{\'{a}}laga, Spain, April 11-13, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7246}, pages = {134--143}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-29066-4\_12}, doi = {10.1007/978-3-642-29066-4\_12}, timestamp = {Tue, 14 May 2019 10:00:37 +0200}, biburl = {https://dblp.org/rec/conf/evoW/HolzingerDFFCR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/RottgerKVWB12, author = {Richard R{\"{o}}ttger and Christoph Kreutzer and Thuy Duong Vu and Tobias Wittkop and Jan Baumbach}, editor = {Sebastian B{\"{o}}cker and Franziska Hufsky and Kerstin Scheubert and Jana Schleicher and Stefan Schuster}, title = {Online Transitivity Clustering of Biological Data with Missing Values}, booktitle = {German Conference on Bioinformatics 2012, {GCB} 2012, Jena, Germany, September 20-22, 2012}, series = {OASIcs}, volume = {26}, pages = {57--68}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2012}, url = {https://doi.org/10.4230/OASIcs.GCB.2012.57}, doi = {10.4230/OASICS.GCB.2012.57}, timestamp = {Tue, 15 Feb 2022 09:40:04 +0100}, biburl = {https://dblp.org/rec/conf/gcb/RottgerKVWB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iberamia/SkrobanekUWMD12, author = {Pawel Skrobanek and Olgierd Unold and Ewa Walkowicz and Henryk Maciejewski and Maciej Dobrowolski}, editor = {Juan Pav{\'{o}}n and N{\'{e}}stor D. Duque{-}M{\'{e}}ndez and Rub{\'{e}}n Fuentes{-}Fern{\'{a}}ndez}, title = {Study on the Impact of Affinity on the Results of Data Mining in Biological Populations}, booktitle = {Advances in Artificial Intelligence - {IBERAMIA} 2012 - 13th Ibero-American Conference on AI, Cartagena de Indias, Colombia, November 13-16, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7637}, pages = {111--119}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-34654-5\_12}, doi = {10.1007/978-3-642-34654-5\_12}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iberamia/SkrobanekUWMD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icaisc/MaciejewskiWUS12, author = {Henryk Maciejewski and Ewa Walkowicz and Olgierd Unold and Pawel Skrobanek}, editor = {Leszek Rutkowski and Marcin Korytkowski and Rafal Scherer and Ryszard Tadeusiewicz and Lotfi A. Zadeh and Jacek M. Zurada}, title = {Enhancing Recognition of a Weak Class - Comparative Study Based on Biological Population Data Mining}, booktitle = {Artificial Intelligence and Soft Computing - 11th International Conference, {ICAISC} 2012, Zakopane, Poland, April 29-May 3, 2012, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {7268}, pages = {136--143}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-29350-4\_16}, doi = {10.1007/978-3-642-29350-4\_16}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icaisc/MaciejewskiWUS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmla/BegumA12, author = {Salma Begum and Ramazan Savas Ayg{\"{u}}n}, title = {Analyzing the Performance of Hierarchical Binary Classifiers for Multi-class Classification Problem Using Biological Data}, booktitle = {11th International Conference on Machine Learning and Applications, ICMLA, Boca Raton, FL, USA, December 12-15, 2012. Volume 2}, pages = {145--150}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/ICMLA.2012.165}, doi = {10.1109/ICMLA.2012.165}, timestamp = {Wed, 16 Oct 2019 14:14:53 +0200}, biburl = {https://dblp.org/rec/conf/icmla/BegumA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ida/KlawonnABJ12, author = {Frank Klawonn and Nada Abidi and Evelin Berger and Lothar J{\"{a}}nsch}, editor = {Jaakko Hollm{\'{e}}n and Frank Klawonn and Allan Tucker}, title = {Curve Fitting for Short Time Series Data from High Throughput Experiments with Correction for Biological Variation}, booktitle = {Advances in Intelligent Data Analysis {XI} - 11th International Symposium, {IDA} 2012, Helsinki, Finland, October 25-27, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7619}, pages = {150--160}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-34156-4\_15}, doi = {10.1007/978-3-642-34156-4\_15}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ida/KlawonnABJ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/imis/Ogiela12, author = {Lidia Ogiela}, editor = {Ilsun You and Leonard Barolli and Antonio Gentile and Hae{-}Duck Joshua Jeong and Marek R. Ogiela and Fatos Xhafa}, title = {Biological Modelling in Semantic Data Analysis Systems}, booktitle = {Sixth International Conference on Innovative Mobile and Internet Services in Ubiquitous Computing, {IMIS} 2012, Palermo, Italy, July 4-6, 2012}, pages = {99--102}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/IMIS.2012.81}, doi = {10.1109/IMIS.2012.81}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/imis/Ogiela12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/incdm/GasparovicaKA12, author = {Madara Gasparovica and Gita Krievina and Ludmila Aleksejeva}, editor = {Isabelle Bichindaritz and Petra Perner and Georg Ru{\ss} and Rainer Schmidt}, title = {Biological Interpretation of Metabolic Syndrome Data Missing Value Imputation and Classification}, booktitle = {Advances in Data Mining, 12th Industrial Conference, {ICDM} 2012, Berlin, Germany, July 2012, Workshop Proceedings, Workshop on Case-Based Reasoning {CBR-MD} 2012, Workshop on Data Mining in Agriculture {DMA} 2012, Workshop on Data Mining in Life Sciences {DMLS} 2012, Workshop on Data Mining in Marketing {DMM} 2012}, pages = {167--176}, publisher = {ibai Publishing}, year = {2012}, timestamp = {Tue, 22 Feb 2022 10:29:37 +0100}, biburl = {https://dblp.org/rec/conf/incdm/GasparovicaKA12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iri/ShanabKWN12, author = {Ahmad Abu Shanab and Taghi M. Khoshgoftaar and Randall Wald and Amri Napolitano}, editor = {Chengcui Zhang and James Joshi and Elisa Bertino and Bhavani Thuraisingham}, title = {Impact of noise and data sampling on stability of feature ranking techniques for biological datasets}, booktitle = {{IEEE} 13th International Conference on Information Reuse {\&} Integration, {IRI} 2012, Las Vegas, NV, USA, August 8-10, 2012}, pages = {415--422}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/IRI.2012.6303039}, doi = {10.1109/IRI.2012.6303039}, timestamp = {Wed, 29 Jun 2022 15:37:42 +0200}, biburl = {https://dblp.org/rec/conf/iri/ShanabKWN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isvc/RosenkranzXZYS12, author = {Joshua Rosenkranz and Yuan Xu and Xing Zhang and Lijun Yin and William Stein}, editor = {George Bebis and Richard Boyle and Bahram Parvin and Darko Koracin and Charless C. Fowlkes and Sen Wang and Min{-}Hyung Choi and Stephan Mantler and J{\"{u}}rgen P. Schulze and Daniel Acevedo and Klaus Mueller and Michael E. Papka}, title = {Panorama Image Construction Using Multiple-Photos Stitching from Biological Data}, booktitle = {Advances in Visual Computing - 8th International Symposium, {ISVC} 2012, Rethymnon, Crete, Greece, July 16-18, 2012, Revised Selected Papers, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {7432}, pages = {242--252}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33191-6\_24}, doi = {10.1007/978-3-642-33191-6\_24}, timestamp = {Mon, 07 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isvc/RosenkranzXZYS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iti/ZhangKL12, author = {Leishi Zhang and Jasna Kuljis and Xiaohui Liu}, editor = {Vesna Luzar{-}Stiffler and Zoran Bekic and Iva Jarec}, title = {Visualization of high throughput biological data}, booktitle = {Proceedings of the 34th International Conference on Information Technology Interfaces, {ITI} 2012, Cavtat / Dubrovnik, Croatia, June 25-28, 2012}, pages = {163--168}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.2498/iti.2012.0380}, doi = {10.2498/ITI.2012.0380}, timestamp = {Wed, 20 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iti/ZhangKL12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/WangHDN12, author = {Hua Wang and Heng Huang and Chris H. Q. Ding and Feiping Nie}, editor = {Benny Chor}, title = {Predicting Protein-Protein Interactions from Multimodal Biological Data Sources via Nonnegative Matrix Tri-Factorization}, booktitle = {Research in Computational Molecular Biology - 16th Annual International Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7262}, pages = {314--325}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-29627-7\_33}, doi = {10.1007/978-3-642-29627-7\_33}, timestamp = {Wed, 10 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/WangHDN12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sac/ChhelLGS12, author = {Fabien Chhel and Fr{\'{e}}d{\'{e}}ric Lardeux and Adrien Go{\"{e}}ffon and Fr{\'{e}}d{\'{e}}ric Saubion}, editor = {Sascha Ossowski and Paola Lecca}, title = {Minimum multiple characterization of biological data using partially defined boolean formulas}, booktitle = {Proceedings of the {ACM} Symposium on Applied Computing, {SAC} 2012, Riva, Trento, Italy, March 26-30, 2012}, pages = {1399--1405}, publisher = {{ACM}}, year = {2012}, url = {https://doi.org/10.1145/2245276.2231998}, doi = {10.1145/2245276.2231998}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/sac/ChhelLGS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/scisisis/TaniiKNKTH12, author = {Hideaki Tanii and Kei Kuramoto and Hiroshi Nakajima and Syoji Kobashi and Naoki Tsuchiya and Yutaka Hata}, title = {A Fuzzy time-series prediction model with multi-biological data for health management}, booktitle = {The 6th International Conference on Soft Computing and Intelligent Systems (SCIS), and The 13th International Symposium on Advanced Intelligence Systems (ISIS), Kobe, Japan, November 20-24, 2012}, pages = {1259--1264}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/SCIS-ISIS.2012.6505205}, doi = {10.1109/SCIS-ISIS.2012.6505205}, timestamp = {Wed, 16 Oct 2019 14:14:48 +0200}, biburl = {https://dblp.org/rec/conf/scisisis/TaniiKNKTH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sebd/CeciCFGMMMMP12, author = {Michelangelo Ceci and Mauro Coluccia and Fabio Fumarola and Pietro Hiram Guzzi and Federica Mandreoli and Riccardo Martoglia and Elio Masciari and Massimo Mecella and Wilma Penzo}, editor = {Nicola Ferro and Letizia Tanca}, title = {A Framework for Biological Data Normalization, Interoperability, and Mining for Cancer Microenvironment Analysis}, booktitle = {Twentieth Italian Symposium on Advanced Database Systems, {SEBD} 2012, Venice, Italy, June 24-27, 2012, Proceedings}, pages = {67--74}, publisher = {Edizioni Libreria Progetto, Padova, Italy}, year = {2012}, url = {http://sebd2012.dei.unipd.it/documents/188475/3553ac06-7eed-42d4-b523-9f9bef554fe6}, timestamp = {Fri, 07 Jun 2019 10:59:18 +0200}, biburl = {https://dblp.org/rec/conf/sebd/CeciCFGMMMMP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swat4ls/JulienLR12, author = {Julien Wollbrett and Pierre Larmande and Manuel Ruiz}, editor = {Adrian Paschke and Albert Burger and Paolo Romano and M. Scott Marshall and Andrea Splendiani}, title = {Semi-automatic Generation of Semantic Web Services for Relational Biological Databases}, booktitle = {Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, Paris, France, November 28-30, 2012}, series = {{CEUR} Workshop Proceedings}, volume = {952}, publisher = {CEUR-WS.org}, year = {2012}, url = {https://ceur-ws.org/Vol-952/paper\_37.pdf}, timestamp = {Fri, 10 Mar 2023 16:23:02 +0100}, biburl = {https://dblp.org/rec/conf/swat4ls/JulienLR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swat4ls/JuppPM12, author = {Simon Jupp and Helen E. Parkinson and James Malone}, editor = {Adrian Paschke and Albert Burger and Paolo Romano and M. Scott Marshall and Andrea Splendiani}, title = {Semantic Web Atlas: Putting Gene Expression Data into Biological Context}, booktitle = {Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, Paris, France, November 28-30, 2012}, series = {{CEUR} Workshop Proceedings}, volume = {952}, publisher = {CEUR-WS.org}, year = {2012}, url = {https://ceur-ws.org/Vol-952/paper\_11.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/swat4ls/JuppPM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/vda/HolzhuterLSSSS12, author = {Clemens Holzh{\"{u}}ter and Alexander Lex and Dieter Schmalstieg and Hans{-}J{\"{o}}rg Schulz and Heidrun Schumann and Marc Streit}, editor = {Pak Chung Wong and David L. Kao and Ming C. Hao and Chaomei Chen and Robert Kosara and Mark A. Livingston and Jinah Park and Ian Roberts}, title = {Visualizing uncertainty in biological expression data}, booktitle = {Visualization and Data Analysis 2012, Burlingame, CA, USA, January 23-25, 2012}, series = {{SPIE} Proceedings}, volume = {8294}, pages = {82940O}, publisher = {{SPIE}}, year = {2012}, url = {https://doi.org/10.1117/12.908516}, doi = {10.1117/12.908516}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/vda/HolzhuterLSSSS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/daglib/p/KnollWH12, author = {Aaron Knoll and Rolf Westerteiger and Hans Hagen}, editor = {Lars Linsen and Hans Hagen and Bernd Hamann and Hans{-}Christian Hege}, title = {An Evaluation of Peak Finding for {DVR} Classification of Biological Data}, booktitle = {Visualization in Medicine and Life Sciences {II} - Progress and New Challenges}, series = {Mathematics and visualization}, pages = {91--106}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-21608-4\_6}, doi = {10.1007/978-3-642-21608-4\_6}, timestamp = {Thu, 14 Oct 2021 08:45:49 +0200}, biburl = {https://dblp.org/rec/books/daglib/p/KnollWH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/igi/12/GomezML12, author = {Karina Mabell Gomez and Daniele Miorandi and David B. Lowe}, editor = {Pietro Lio' and Dinesh C. Verma}, title = {Data Highways}, booktitle = {Biologically Inspired Networking and Sensing - Algorithms and Architectures}, pages = {223--241}, publisher = {{IGI} Global}, year = {2012}, url = {https://doi.org/10.4018/978-1-61350-092-7.ch012}, doi = {10.4018/978-1-61350-092-7.CH012}, timestamp = {Wed, 25 Sep 2019 17:41:08 +0200}, biburl = {https://dblp.org/rec/books/igi/12/GomezML12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/biovis/2012, title = {2012 {IEEE} Symposium on Biological Data Visualization, BioVis 2011, Seattle, WA, USA, October 14-15, 2012}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://ieeexplore.ieee.org/xpl/conhome/6373776/proceeding}, isbn = {978-1-4673-4729-7}, timestamp = {Wed, 16 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/biovis/2012.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dagstuhl-reports/GorgHKOW12, author = {Carsten G{\"{o}}rg and Lawrence Hunter and Jessie Kennedy and Se{\'{a}}n I. O'Donoghue and Jarke J. van Wijk}, title = {Biological Data Visualization (Dagstuhl Seminar 12372)}, journal = {Dagstuhl Reports}, volume = {2}, number = {9}, pages = {131--164}, year = {2012}, url = {https://doi.org/10.4230/DagRep.2.9.131}, doi = {10.4230/DAGREP.2.9.131}, timestamp = {Wed, 07 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/dagstuhl-reports/GorgHKOW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Garcia11, author = {Wandaliz Torres{-}Garc{\'{\i}}a}, title = {Integrative Analyses of Diverse Biological Data Sources}, school = {Arizona State University, Tempe, {USA}}, year = {2011}, url = {https://hdl.handle.net/2286/R.I.9224}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Garcia11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Guner11, author = {Ugur Guner}, title = {Identification of topological and dynamic properties of biological networks through diverse types of data}, school = {Georgia Institute of Technology, Atlanta, GA, {USA}}, year = {2011}, url = {https://hdl.handle.net/1853/41116}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Guner11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Luo11a, author = {Man Luo}, title = {Cheminformatics Modeling of Diverse and Disparate Biological Data and the Use of Models to Discover Novel Bioactive Molecules}, school = {University of North Carolina, Chapel Hill, {USA}}, year = {2011}, url = {https://doi.org/10.17615/tkd5-e303}, doi = {10.17615/TKD5-E303}, timestamp = {Fri, 31 Mar 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Luo11a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/ca/Min11, author = {Renqiang Min}, title = {Machine Learning Approaches to Biological Sequence and Phenotype Data Analysis}, school = {University of Toronto, Canada}, year = {2011}, url = {http://hdl.handle.net/1807/26209}, timestamp = {Fri, 29 Jul 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/ca/Min11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/de/Uhlmann2011, author = {Johannes Uhlmann}, title = {Multivariate Algorithmics in Biological Data Analysis}, school = {Berlin Institute of Technology}, year = {2011}, url = {http://opus.kobv.de/tuberlin/volltexte/2011/3152/}, urn = {urn:nbn:de:kobv:83-opus-31525}, isbn = {978-3-7983-2352-0}, timestamp = {Sat, 17 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/de/Uhlmann2011.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/abi/Iber11, author = {Dagmar Iber}, title = {Inferring Biological Mechanisms by Data-Based Mathematical Modelling: Compartment-Specific Gene Activation during Sporulation in \emph{Bacillus subtilis} as a Test Case}, journal = {Adv. Bioinformatics}, volume = {2011}, pages = {124062:1--124062:12}, year = {2011}, url = {https://doi.org/10.1155/2011/124062}, doi = {10.1155/2011/124062}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/abi/Iber11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/aicom/Schietgat11, author = {Leander Schietgat}, title = {Graph-based data mining for biological applications}, journal = {{AI} Commun.}, volume = {24}, number = {1}, pages = {95--96}, year = {2011}, url = {https://doi.org/10.3233/AIC-2010-0482}, doi = {10.3233/AIC-2010-0482}, timestamp = {Thu, 18 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/aicom/Schietgat11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bc/TwickelBP11, author = {Arndt von Twickel and Ansgar B{\"{u}}schges and Frank Pasemann}, title = {Deriving neural network controllers from neuro-biological data: implementation of a single-leg stick insect controller}, journal = {Biol. Cybern.}, volume = {104}, number = {1-2}, pages = {95--119}, year = {2011}, url = {https://doi.org/10.1007/s00422-011-0422-1}, doi = {10.1007/S00422-011-0422-1}, timestamp = {Thu, 17 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bc/TwickelBP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MansmannJ11, author = {Ulrich Mansmann and Vindi Jurinovic}, title = {Biological feature validation of estimated gene interaction networks from microarray data: a case study on {MYC} in lymphomas}, journal = {Briefings Bioinform.}, volume = {12}, number = {3}, pages = {230--244}, year = {2011}, url = {https://doi.org/10.1093/bib/bbr007}, doi = {10.1093/BIB/BBR007}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/MansmannJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/UrbachM11, author = {Davnah Urbach and Jason H. Moore}, title = {The spatial dimension in biological data mining}, journal = {BioData Min.}, volume = {4}, pages = {6}, year = {2011}, url = {https://doi.org/10.1186/1756-0381-4-6}, doi = {10.1186/1756-0381-4-6}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/UrbachM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/UrbachM11a, author = {Davnah Urbach and Jason H. Moore}, title = {Data mining and the evolution of biological complexity}, journal = {BioData Min.}, volume = {4}, pages = {7}, year = {2011}, url = {https://doi.org/10.1186/1756-0381-4-7}, doi = {10.1186/1756-0381-4-7}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/UrbachM11a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodatamining/ZhengJHZGCZL11, author = {Guang Zheng and Miao Jiang and Xiaojuan He and Jing Zhao and Hongtao Guo and Gao Chen and Qinglin Zha and Aiping Lu}, title = {Discrete derivative: a data slicing algorithm for exploration of sharing biological networks between rheumatoid arthritis and coronary heart disease}, journal = {BioData Min.}, volume = {4}, pages = {18}, year = {2011}, url = {https://doi.org/10.1186/1756-0381-4-18}, doi = {10.1186/1756-0381-4-18}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodatamining/ZhengJHZGCZL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11, author = {Pascale Gaudet and Amos Bairoch and Dawn Field and Susanna{-}Assunta Sansone and Chris F. Taylor and Teresa K. Attwood and Alex Bateman and Judith A. Blake and Carol J. Bult and J. Michael Cherry and Rex L. Chisholm and Guy Cochrane and Charles E. Cook and Janan T. Eppig and Michael Y. Galperin and Robert Gentleman and Carole A. Goble and Takashi Gojobori and John M. Hancock and Douglas G. Howe and Tadashi Imanishi and Janet Kelso and David Landsman and Suzanna E. Lewis and Ilene Karsch{-}Mizrachi and Sandra E. Orchard and B. F. Francis Ouellette and Shoba Ranganathan and Lorna J. Richardson and Philippe Rocca{-}Serra and Paul N. Schofield and Damian Smedley and Christopher Southan and Tin Wee Tan and Tatiana A. Tatusova and Patricia L. Whetzel and Owen White and Chisato Yamasaki}, title = {Towards BioDBcore: a community-defined information specification for biological databases}, journal = {Database J. Biol. Databases Curation}, volume = {2011}, year = {2011}, url = {https://doi.org/10.1093/database/baq027}, doi = {10.1093/DATABASE/BAQ027}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/GubermanAA11, author = {Jonathan M. Guberman and Jiye Ai and Olivier Arnaiz and Joachim Baran and Andrew Blake and Richard A. Baldock and Claude Chelala and David Croft and Anthony Cros and Rosalind J. Cutts and Alex Di G{\'{e}}nova and Simon A. Forbes and Takatomo Fujisawa and Emanuela Gadaleta and David M. Goodstein and Gunes Gundem and Bernard Haggarty and Syed Haider and Matthew Hall and Todd W. Harris and Robin Haw and Shen Hu and Simon J. Hubbard and Jack Hsu and Vivek Iyer and Philip Jones and Toshiaki Katayama and Rhoda Kinsella and Lei Kong and Daniel Lawson and Yong Liang and N{\'{u}}ria L{\'{o}}pez{-}Bigas and Jie Luo and Michael J. Lush and Jeremy C. Mason and Fran{\c{c}}ois Moreews and Nelson Ndegwa and Darren J. Oakley and Christian Perez{-}Llamas and Michael Primig and Elena Rivkin and Steven Rosanoff and Rebecca Shepherd and Reinhard Simon and William C. Skarnes and Damian Smedley and Linda Sperling and William Spooner and Peter Stevenson and Kevin R. Stone and Jon W. Teague and Jun Wang and Jianxin Wang and Brett Whitty and David Tai Wai Wong and Marie Wong{-}Erasmus and Long Yao and Ken Youens{-}Clark and Christina K. Yung and Junjun Zhang and Arek Kasprzyk}, title = {BioMart Central Portal: an open database network for the biological community}, journal = {Database J. Biol. Databases Curation}, volume = {2011}, year = {2011}, url = {https://doi.org/10.1093/database/bar041}, doi = {10.1093/DATABASE/BAR041}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/GubermanAA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/Kasprzyk11, author = {Arek Kasprzyk}, title = {BioMart: driving a paradigm change in biological data management}, journal = {Database J. Biol. Databases Curation}, volume = {2011}, year = {2011}, url = {https://doi.org/10.1093/database/bar049}, doi = {10.1093/DATABASE/BAR049}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/Kasprzyk11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/LaulederkindSHLNPSWPKLRMDTJ11, author = {Stanley J. F. Laulederkind and Mary Shimoyama and G. Thomas Hayman and Timothy Lowry and Rajni Nigam and Victoria Petri and Jennifer R. Smith and Shur{-}Jen Wang and Jeff de Pons and George Kowalski and Weisong Liu and Wes Rood and Diane H. Munzenmaier and Melinda R. Dwinell and Simon N. Twigger and Howard J. Jacob}, title = {The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data}, journal = {Database J. Biol. Databases Curation}, volume = {2011}, year = {2011}, url = {https://doi.org/10.1093/database/bar002}, doi = {10.1093/DATABASE/BAR002}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/LaulederkindSHLNPSWPKLRMDTJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/IsciOJO11, author = {Senol Isci and Cengizhan Ozturk and Jon Jones and Hasan H. Otu}, title = {Pathway analysis of high-throughput biological data within a Bayesian network framework}, journal = {Bioinform.}, volume = {27}, number = {12}, pages = {1667--1674}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr269}, doi = {10.1093/BIOINFORMATICS/BTR269}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/IsciOJO11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/LiRB11, author = {Limin Li and Barbara Rakitsch and Karsten M. Borgwardt}, title = {ccSVM: correcting Support Vector Machines for confounding factors in biological data classification}, journal = {Bioinform.}, volume = {27}, number = {13}, pages = {342--348}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr204}, doi = {10.1093/BIOINFORMATICS/BTR204}, timestamp = {Tue, 08 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/LiRB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PosekanyFS11, author = {Alexandra Posekany and K. Felsenstein and Peter Sykacek}, title = {Biological assessment of robust noise models in microarray data analysis}, journal = {Bioinform.}, volume = {27}, number = {6}, pages = {807--814}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr018}, doi = {10.1093/BIOINFORMATICS/BTR018}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PosekanyFS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VignesBLF11, author = {Matthieu Vignes and Juliette Blanchet and Damien Leroux and Florence Forbes}, title = {SpaCEM\({}^{\mbox{3}}\): a software for biological module detection when data is incomplete, high dimensional and dependent}, journal = {Bioinform.}, volume = {27}, number = {6}, pages = {881--882}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr034}, doi = {10.1093/BIOINFORMATICS/BTR034}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VignesBLF11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GaoW11, author = {Shouguo Gao and Xujing Wang}, title = {Quantitative utilization of prior biological knowledge in the Bayesian network modeling of gene expression data}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {359}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-359}, doi = {10.1186/1471-2105-12-359}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GaoW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/JeongNUM11, author = {Euna Jeong and Masao Nagasaki and Kazuko Ueno and Satoru Miyano}, title = {Ontology-based instance data validation for high-quality curated biological pathways}, journal = {{BMC} Bioinform.}, volume = {12}, number = {{S-1}}, pages = {S8}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-S1-S8}, doi = {10.1186/1471-2105-12-S1-S8}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/JeongNUM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RangarajanSYCHOFDISCSM11, author = {Arun Rangarajan and Tim Schedl and Karen Yook and Juancarlos Chan and Stephen Haenel and Lolly Otis and Sharon Faelten and Tracey DePellegrin{-}Connelly and Ruth Isaacson and Marek S. Skrzypek and J. Michael Cherry and Paul W. Sternberg and Hans{-}Michael M{\"{u}}ller}, title = {Toward an interactive article: integrating journals and biological databases}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {175}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-175}, doi = {10.1186/1471-2105-12-175}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RangarajanSYCHOFDISCSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SongPCSKK11, author = {Young Soo Song and Chan Hee Park and Hee{-}Joon Chung and Hyunjung Shin and Jihun Kim and Ju Han Kim}, title = {Semantically enabled and statistically supported biological hypothesis testing with tissue microarray databases}, journal = {{BMC} Bioinform.}, volume = {12}, number = {{S-1}}, pages = {S51}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-S1-S51}, doi = {10.1186/1471-2105-12-S1-S51}, timestamp = {Thu, 28 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SongPCSKK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/KozhenkovSDGRPB11, author = {Sergey Kozhenkov and Mayya Sedova and Yulia Dubinina and Amarnath Gupta and Animesh Ray and Julia V. Ponomarenko and Michael Baitaluk}, title = {BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies}, journal = {{BMC} Syst. Biol.}, volume = {5}, pages = {7}, year = {2011}, url = {https://doi.org/10.1186/1752-0509-5-7}, doi = {10.1186/1752-0509-5-7}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/KozhenkovSDGRPB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/NdukumFSVD11, author = {Juliet Ndukum and Lu{\'{\i}}s L. Fonseca and Helena Santos and Eberhard O. Voit and Susmita Datta}, title = {Statistical Inference Methods for Sparse Biological Time Series Data}, journal = {{BMC} Syst. Biol.}, volume = {5}, pages = {57}, year = {2011}, url = {https://doi.org/10.1186/1752-0509-5-57}, doi = {10.1186/1752-0509-5-57}, timestamp = {Tue, 05 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/NdukumFSVD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbm/LiH11, author = {Han{-}Lin Li and Yao{-}Huei Huang}, title = {A {DIAMOND} method of inducing classification rules for biological data}, journal = {Comput. Biol. Medicine}, volume = {41}, number = {8}, pages = {587--599}, year = {2011}, url = {https://doi.org/10.1016/j.compbiomed.2011.05.002}, doi = {10.1016/J.COMPBIOMED.2011.05.002}, timestamp = {Wed, 02 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbm/LiH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ci/CohenVJROBWTH11, author = {K. Bretonnel Cohen and Karin Verspoor and Helen L. Johnson and Christophe Roeder and Philip V. Ogren and William A. Baumgartner Jr. and Elizabeth K. White and Hannah J. Tipney and Lawrence Hunter}, title = {High-Precision Biological Event Extraction: Effects of System and of Data}, journal = {Comput. Intell.}, volume = {27}, number = {4}, pages = {681--701}, year = {2011}, url = {https://doi.org/10.1111/j.1467-8640.2011.00405.x}, doi = {10.1111/J.1467-8640.2011.00405.X}, timestamp = {Thu, 17 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ci/CohenVJROBWTH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/csda/LiuTSH11, author = {Rui{-}Yin Liu and Jian Tao and Ning{-}Zhong Shi and Xuming He}, title = {Bayesian analysis of the patterns of biological susceptibility via reversible jump {MCMC} sampling}, journal = {Comput. Stat. Data Anal.}, volume = {55}, number = {3}, pages = {1498--1508}, year = {2011}, url = {https://doi.org/10.1016/j.csda.2010.10.016}, doi = {10.1016/J.CSDA.2010.10.016}, timestamp = {Wed, 23 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/csda/LiuTSH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/csda/Wu11, author = {Han{-}Ming Wu}, title = {On biological validity indices for soft clustering algorithms for gene expression data}, journal = {Comput. Stat. Data Anal.}, volume = {55}, number = {5}, pages = {1969--1979}, year = {2011}, url = {https://doi.org/10.1016/j.csda.2010.12.003}, doi = {10.1016/J.CSDA.2010.12.003}, timestamp = {Tue, 18 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/csda/Wu11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dke/GuptaCQ11, author = {Amarnath Gupta and Christopher Condit and Xufei Qian}, title = {Corrigendum to "BioDB: An ontology-enhanced information system for heterogeneous biological information" [Data {\&} Knowledge Engineering 69 {(11)} {(2010)} 1084-1102]}, journal = {Data Knowl. Eng.}, volume = {70}, number = {1}, pages = {165}, year = {2011}, url = {https://doi.org/10.1016/j.datak.2010.11.004}, doi = {10.1016/J.DATAK.2010.11.004}, timestamp = {Sat, 20 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/dke/GuptaCQ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dlib/MichenerVVKCJ11, author = {William Michener and David Vieglais and Todd J. Vision and John A. Kunze and Patricia Cruse and Greg Jan{\'{e}}e}, title = {DataONE: Data Observation Network for Earth - Preserving Data and Enabling Innovation in the Biological and Environmental Sciences}, journal = {D Lib Mag.}, volume = {17}, number = {1/2}, year = {2011}, url = {https://doi.org/10.1045/january2011-michener}, doi = {10.1045/JANUARY2011-MICHENER}, timestamp = {Tue, 24 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/dlib/MichenerVVKCJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ejasp/PiconGRIW11, author = {Artzai Pic{\'{o}}n and Ovidiu Ghita and Sergio Rodr{\'{\i}}guez{-}Vaamonde and Pedro M. Iriondo and Paul F. Whelan}, title = {Biologically-inspired data decorrelation for hyper-spectral imaging}, journal = {{EURASIP} J. Adv. Signal Process.}, volume = {2011}, pages = {66}, year = {2011}, url = {https://doi.org/10.1186/1687-6180-2011-66}, doi = {10.1186/1687-6180-2011-66}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ejasp/PiconGRIW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/NingNL11, author = {Kang Ning and Hoong Kee Ng and Hon Wai Leong}, title = {Analysis of the relationships among Longest Common Subsequences, Shortest Common Supersequences and patterns and its application on pattern discovery in biological sequences}, journal = {Int. J. Data Min. Bioinform.}, volume = {5}, number = {6}, pages = {611--625}, year = {2011}, url = {https://doi.org/10.1504/IJDMB.2011.045413}, doi = {10.1504/IJDMB.2011.045413}, timestamp = {Fri, 03 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/NingNL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijiids/SaleemFAA11, author = {Kashif Saleem and Norsheila Fisal and Muhammad Sharil Abdullah and Sharifah Hafizah Syed Ariffin}, title = {Biological inspired secure autonomous routing mechanism for wireless sensor networks}, journal = {Int. J. Intell. Inf. Database Syst.}, volume = {5}, number = {4}, pages = {313--337}, year = {2011}, url = {https://doi.org/10.1504/IJIIDS.2011.041321}, doi = {10.1504/IJIIDS.2011.041321}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijiids/SaleemFAA11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijkdb/SrinivasanABGKLMMMRSSST11, author = {Narayanaswamy Srinivasan and Garima Agarwal and Ramachandra M. Bhaskara and Rupali A. Gadkari and Oruganty Krishnadev and B. Lakshmi and Swapnil Mahajan and Smita Mohanty and Richa Mudgal and R. Rakshambikai and Sankaran Sandhya and G. Sudha and L. S. Swapna and N. Tyagi}, title = {Influence of Genomic and Other Biological Data Sets in the Understanding of Protein Structures, Functions and Interactions}, journal = {Int. J. Knowl. Discov. Bioinform.}, volume = {2}, number = {1}, pages = {24--44}, year = {2011}, url = {https://doi.org/10.4018/jkdb.2011010102}, doi = {10.4018/JKDB.2011010102}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijkdb/SrinivasanABGKLMMMRSSST11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/im/AlcarazKWWB11, author = {Nicolas Alcaraz and Hande K{\"{u}}c{\"{u}}k and Jochen Weile and Anil Wipat and Jan Baumbach}, title = {KeyPathwayMiner: Detecting Case-Specific Biological Pathways Using Expression Data}, journal = {Internet Math.}, volume = {7}, number = {4}, pages = {299--313}, year = {2011}, url = {https://doi.org/10.1080/15427951.2011.604548}, doi = {10.1080/15427951.2011.604548}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/im/AlcarazKWWB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/it/KormeierHH11, author = {Benjamin Kormeier and Klaus Hippe and Ralf Hofest{\"{a}}dt}, title = {Data Warehouses in Bioinformatics: Integration of Molecular Biological Data}, journal = {it Inf. Technol.}, volume = {53}, number = {5}, pages = {241--249}, year = {2011}, url = {https://doi.org/10.1524/itit.2011.0649}, doi = {10.1524/ITIT.2011.0649}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/it/KormeierHH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/KhannaR11, author = {Varun Khanna and Shoba Ranganathan}, title = {Structural diversity of biologically interesting datasets: a scaffold analysis approach}, journal = {J. Cheminformatics}, volume = {3}, pages = {30}, year = {2011}, url = {https://doi.org/10.1186/1758-2946-3-30}, doi = {10.1186/1758-2946-3-30}, timestamp = {Thu, 14 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/KhannaR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcp/LiuC11a, author = {Wei Liu and Ling Chen}, title = {An Efficient Way of Frequent Embedded Subtree Mining on Biological Data}, journal = {J. Comput.}, volume = {6}, number = {12}, pages = {2574--2581}, year = {2011}, url = {https://doi.org/10.4304/jcp.6.12.2574-2581}, doi = {10.4304/JCP.6.12.2574-2581}, timestamp = {Tue, 15 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcp/LiuC11a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jib/TahaE11, author = {Kamal Taha and Ramez Elmasri}, title = {{GMB:} An Efficient Query Processor for Biological Data}, journal = {J. Integr. Bioinform.}, volume = {8}, number = {2}, year = {2011}, url = {https://doi.org/10.2390/biecoll-jib-2011-165}, doi = {10.2390/BIECOLL-JIB-2011-165}, timestamp = {Tue, 14 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jib/TahaE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jms/LuKH11, author = {Ying{-}Hao Lu and Chen{-}Chun Kuo and Yaw{-}Bin Huang}, title = {WebBio, a Web-Based Management and Analysis System for Patient Data of Biological Products in Hospital}, journal = {J. Medical Syst.}, volume = {35}, number = {4}, pages = {579--584}, year = {2011}, url = {https://doi.org/10.1007/s10916-009-9394-2}, doi = {10.1007/S10916-009-9394-2}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jms/LuKH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CeramiGDRBASBS11, author = {Ethan G. Cerami and Benjamin E. Gross and Emek Demir and Igor V. Rodchenkov and {\"{O}}zg{\"{u}}n Babur and Nadia Anwar and Nikolaus Schultz and Gary D. Bader and Chris Sander}, title = {Pathway Commons, a web resource for biological pathway data}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {685--690}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1039}, doi = {10.1093/NAR/GKQ1039}, timestamp = {Mon, 26 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CeramiGDRBASBS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CroftOWHGMCGGJJKMMNSSYBHDS11, author = {David Croft and Gavin O'Kelly and Guanming Wu and Robin Haw and Marc Gillespie and Lisa Matthews and Michael Caudy and Phani V. Garapati and Gopal Gopinath and Bijay Jassal and Steven Jupe and Irina Kalatskaya and Shahana Mahajan and Bruce May and Nelson Ndegwa and Esther Schmidt and Veronica Shamovsky and Christina K. Yung and Ewan Birney and Henning Hermjakob and Peter D'Eustachio and Lincoln Stein}, title = {Reactome: a database of reactions, pathways and biological processes}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {691--697}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1018}, doi = {10.1093/NAR/GKQ1018}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CroftOWHGMCGGJJKMMNSSYBHDS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11, author = {Pascale Gaudet and Amos Bairoch and Dawn Field and Susanna{-}Assunta Sansone and Chris F. Taylor and Teresa K. Attwood and Alex Bateman and Judith A. Blake and Carol J. Bult and J. Michael Cherry and Rex L. Chisholm and Guy Cochrane and Charles E. Cook and Janan T. Eppig and Michael Y. Galperin and Robert Gentleman and Carole A. Goble and Takashi Gojobori and John M. Hancock and Douglas G. Howe and Tadashi Imanishi and Janet Kelso and David Landsman and Suzanna E. Lewis and Ilene Karsch{-}Mizrachi and Sandra E. Orchard and B. F. Francis Ouellette and Shoba Ranganathan and Lorna J. Richardson and Philippe Rocca{-}Serra and Paul N. Schofield and Damian Smedley and Christopher Southan and Tin Wee Tan and Tatiana A. Tatusova and Patricia L. Whetzel and Owen White and Chisato Yamasaki}, title = {Towards BioDBcore: a community-defined information specification for biological databases}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {7--10}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1173}, doi = {10.1093/NAR/GKQ1173}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AndonieFAABM11, author = {Razvan Andonie and Levente Fabry{-}Asztalos and Christopher B. Abdul{-}Wahid and Sarah Abdul{-}Wahid and Grant I. Barker and Lukas Magill}, title = {Fuzzy {ARTMAP} Prediction of Biological Activities for Potential {HIV-1} Protease Inhibitors Using a Small Molecular Data Set}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {8}, number = {1}, pages = {80--93}, year = {2011}, url = {https://doi.org/10.1109/TCBB.2009.50}, doi = {10.1109/TCBB.2009.50}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AndonieFAABM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SehgalDNSE11, author = {Aditya Kumar Sehgal and Sanmay Das and Keith Noto and Milton H. Saier Jr. and Charles Elkan}, title = {Identifying Relevant Data for a Biological Database: Handcrafted Rules versus Machine Learning}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {8}, number = {3}, pages = {851--857}, year = {2011}, url = {https://doi.org/10.1109/TCBB.2009.83}, doi = {10.1109/TCBB.2009.83}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SehgalDNSE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/titb/ChatziioannouKDMKM11, author = {Aristotelis A. Chatziioannou and Ioannis Kanaris and Charalampos Doukas and Panagiotis Moulos and Fragiskos N. Kolisis and Ilias Maglogiannis}, title = {{GRISSOM} Platform: Enabling Distributed Processing and Management of Biological Data Through Fusion of Grid and Web Technologies}, journal = {{IEEE} Trans. Inf. Technol. Biomed.}, volume = {15}, number = {1}, pages = {83--92}, year = {2011}, url = {https://doi.org/10.1109/TITB.2010.2092784}, doi = {10.1109/TITB.2010.2092784}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/titb/ChatziioannouKDMKM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/MiwakeichiOOKTI11, author = {Fumikazu Miwakeichi and Yoshitaka Oku and Yasumasa Okada and Shigeharu Kawai and Yoshiyasu Tamura and Makio Ishiguro}, title = {Detection and Visualization Method of Dynamic State Transition for Biological Spatio-Temporal Imaging Data}, journal = {{IEEE} Trans. Medical Imaging}, volume = {30}, number = {3}, pages = {859--866}, year = {2011}, url = {https://doi.org/10.1109/TMI.2011.2104419}, doi = {10.1109/TMI.2011.2104419}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/MiwakeichiOOKTI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tsp/TriganoIR11, author = {Thomas Trigano and Uri Isserles and Yaacov Ritov}, title = {Semiparametric Curve Alignment and Shift Density Estimation for Biological Data}, journal = {{IEEE} Trans. Signal Process.}, volume = {59}, number = {5}, pages = {1970--1984}, year = {2011}, url = {https://doi.org/10.1109/TSP.2011.2113179}, doi = {10.1109/TSP.2011.2113179}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tsp/TriganoIR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/widm/ArshadiJ11, author = {Niloofar Arshadi and Igor Jurisica}, title = {Ensembles of case-based reasoning classifiers in high-dimensional biological domains}, journal = {WIREs Data Mining Knowl. Discov.}, volume = {1}, number = {2}, pages = {164--171}, year = {2011}, url = {https://doi.org/10.1002/widm.22}, doi = {10.1002/WIDM.22}, timestamp = {Fri, 21 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/widm/ArshadiJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/adcons/EdlaJ11, author = {Damodar Reddy Edla and Prasanta K. Jana}, editor = {P. Santhi Thilagam and Alwyn Roshan Pais and K. Chandrasekaran and N. Balakrishnan}, title = {Clustering Biological Data Using Voronoi Diagram}, booktitle = {Advanced Computing, Networking and Security - International Conference, {ADCONS} 2011, Surathkal, India, December 16-18, 2011, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {7135}, pages = {188--197}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-29280-4\_21}, doi = {10.1007/978-3-642-29280-4\_21}, timestamp = {Mon, 29 Jun 2020 13:10:10 +0200}, biburl = {https://dblp.org/rec/conf/adcons/EdlaJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/ShihP11, author = {Yu{-}Keng Shih and Srinivasan Parthasarathy}, editor = {Robert Grossman and Andrey Rzhetsky and Sun Kim and Wei Wang}, title = {Scalable multiple global network alignment for biological data}, booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03, 2011}, pages = {96--105}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2147805.2147816}, doi = {10.1145/2147805.2147816}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/ShihP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/DittmanKWW11, author = {David J. Dittman and Taghi M. Khoshgoftaar and Randall Wald and Huanjing Wang}, editor = {Fang{-}Xiang Wu and Mohammed Javeed Zaki and Shinichi Morishita and Yi Pan and Stephen Wong and Anastasia Christianson and Xiaohua Hu}, title = {Stability Analysis of Feature Ranking Techniques on Biological Datasets}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011}, pages = {252--256}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/BIBM.2011.84}, doi = {10.1109/BIBM.2011.84}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/DittmanKWW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/Jamil11, author = {Hasan M. Jamil}, editor = {Fang{-}Xiang Wu and Mohammed Javeed Zaki and Shinichi Morishita and Yi Pan and Stephen Wong and Anastasia Christianson and Xiaohua Hu}, title = {Toward a Cooperative Natural Language Query Interface for Biological Databases}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011}, pages = {556--561}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/BIBM.2011.122}, doi = {10.1109/BIBM.2011.122}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/Jamil11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/LiuPDLFDCW11, author = {Sheng Liu and Ronak Y. Patel and Pankaj R. Daga and Haining Liu and Gang Fu and Robert J. Doerksen and Yixin Chen and Dawn Wilkins}, editor = {Fang{-}Xiang Wu and Mohammed Javeed Zaki and Shinichi Morishita and Yi Pan and Stephen Wong and Anastasia Christianson and Xiaohua Hu}, title = {Multi-class Joint Rule Extraction and Feature Selection for Biological Data}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011}, pages = {476--481}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/BIBM.2011.82}, doi = {10.1109/BIBM.2011.82}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/LiuPDLFDCW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biostec/AbateAFM11, author = {Francesco Abate and Andrea Acquaviva and Elisa Ficarra and Enrico Macii}, editor = {Marco Pellegrini and Ana L. N. Fred and Joaquim Filipe and Hugo Gamboa}, title = {A New Latent Semantic Analysis based Methodology for Knowledge Extraction from Biomedical Literature and Biological Pathways Databases}, booktitle = {{BIOINFORMATICS} 2011 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Rome, Italy, 26-29 January, 2011}, pages = {66--74}, publisher = {SciTePress}, year = {2011}, timestamp = {Thu, 21 Dec 2017 16:21:33 +0100}, biburl = {https://dblp.org/rec/conf/biostec/AbateAFM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biostec/CoutoSS11a, author = {Br{\'{a}}ulio Roberto Gon{\c{c}}alves Marinho Couto and Marcelo Matos Santoro and Marcos Augusto dos Santos}, editor = {Marco Pellegrini and Ana L. N. Fred and Joaquim Filipe and Hugo Gamboa}, title = {Unrevealing Biological Process with Linear Algebra - Extracting Patterns from Noisy Data}, booktitle = {{BIOINFORMATICS} 2011 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Rome, Italy, 26-29 January, 2011}, pages = {313--317}, publisher = {SciTePress}, year = {2011}, timestamp = {Wed, 28 Sep 2011 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/biostec/CoutoSS11a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cdc/MontefuscoCAB11, author = {Francesco Montefusco and Carlo Cosentino and Francesco Amato and Declan G. Bates}, title = {Reverse-engineering biological interaction networks from noisy data using Regularized Least Squares and Instrumental Variables}, booktitle = {50th {IEEE} Conference on Decision and Control and European Control Conference, 11th European Control Conference, {CDC/ECC} 2011, Orlando, FL, USA, December 12-15, 2011}, pages = {4395--4400}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/CDC.2011.6161266}, doi = {10.1109/CDC.2011.6161266}, timestamp = {Wed, 24 Feb 2021 08:49:08 +0100}, biburl = {https://dblp.org/rec/conf/cdc/MontefuscoCAB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/chinagrid/ZhuLL11, author = {Xiangyuan Zhu and Kenli Li and Renfa Li}, title = {A Data Parallel Strategy for Aligning Multiple Biological Sequences on Homogeneous Multiprocessor Platform}, booktitle = {Sixth Chinagrid Annual Conference, ChinaGrid 2011, Dalian, Liaoning, China, Aug. 22-23, 2011}, pages = {188--195}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/ChinaGrid.2011.42}, doi = {10.1109/CHINAGRID.2011.42}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/chinagrid/ZhuLL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ciss/PorterIBE11, author = {Joshua R. Porter and Pablo A. Iglesias and John S. Burg and Peter J. Espenshade}, title = {Overcoming data limitations to identify a static nonlinearity in a biological signaling cascade}, booktitle = {45st Annual Conference on Information Sciences and Systems, {CISS} 2011, The John Hopkins University, Baltimore, MD, USA, 23-25 March 2011}, pages = {1--6}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/CISS.2011.5766151}, doi = {10.1109/CISS.2011.5766151}, timestamp = {Wed, 16 Oct 2019 14:14:51 +0200}, biburl = {https://dblp.org/rec/conf/ciss/PorterIBE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cw/Stadon11, author = {Julian Stadon}, editor = {Marina L. Gavrilova}, title = {Post-Biological Hypersurfacing: Embodied Mixed Reality Data Transfer}, booktitle = {2011 International Conference on Cyberworlds, {CW} 2011, Calgary, Alberta, Canada, October 4-6, 2011}, pages = {264--268}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/CW.2011.41}, doi = {10.1109/CW.2011.41}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cw/Stadon11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dexaw/HanczarN11, author = {Blaise Hanczar and Mohamed Nadif}, editor = {Franck Morvan and A Min Tjoa and Roland R. Wagner}, title = {Improving the Biological Relevance of Biclustering for Microarray Data in Using Ensemble Methods}, booktitle = {2011 Database and Expert Systems Applications, DEXA, International Workshops, Toulouse, France, August 29 - Sept. 2, 2011}, pages = {413--417}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/DEXA.2011.44}, doi = {10.1109/DEXA.2011.44}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/dexaw/HanczarN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dsrt/StadonG11, author = {Julian Stadon and Rapha{\"{e}}l Grasset}, editor = {David J. Roberts and J. Mark Pullen and Georgios Theodoropoulos and Nick J. Avis}, title = {Syncretic Post-Biological Digital Identity: Hybridizing Mixed Reality Data Transfer Systems}, booktitle = {15th {IEEE/ACM} International Symposium on Distributed Simulation and Real Time Applications, {DS-RT} 2011, Salford, United Kingdom, September 4-7, 2011}, pages = {120--125}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/DS-RT.2011.28}, doi = {10.1109/DS-RT.2011.28}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/dsrt/StadonG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/esann/Lapuyade-LahorgueM11, author = {J{\'{e}}r{\^{o}}me Lapuyade{-}Lahorgue and Ali Mohammad{-}Djafari}, title = {Nearest neighbors and correlation dimension for dimensionality estimation. Application to factor analysis of real biological time series data}, booktitle = {19th European Symposium on Artificial Neural Networks, {ESANN} 2011, Bruges, Belgium, April 27-29, 2011, Proceedings}, year = {2011}, url = {https://www.esann.org/sites/default/files/proceedings/legacy/es2011-38.pdf}, timestamp = {Tue, 02 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/esann/Lapuyade-LahorgueM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gensips/VicenteLH11, author = {F{\'{a}}bio Fernandes da Rocha Vicente and Fabr{\'{\i}}cio Martins Lopes and Ronaldo Fumio Hashimoto}, title = {Improvement of GNs inference through biological data integration}, booktitle = {2011 {IEEE} International Workshop on Genomic Signal Processing and Statistics, GENSiPS 2011, San Antonio, TX, USA, December 4-6, 2011}, pages = {70--73}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/GENSiPS.2011.6169446}, doi = {10.1109/GENSIPS.2011.6169446}, timestamp = {Wed, 16 Oct 2019 14:14:54 +0200}, biburl = {https://dblp.org/rec/conf/gensips/VicenteLH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/haicta/DachBPK11, author = {Jacek Dach and Piotr Boniecki and Krzysztof Pilarski and Adam Krysztofiak}, editor = {Michail Salampasis and Aris Matopoulos}, title = {Data Acquisition During Composting Experiments with Usage of 4-chamber Bioreactor for Modeling of Biological Processes}, booktitle = {Proceedings of the 5th International Conference on Information and Communication Technologies for Sustainable Agri-production and Environment {(HAICTA} 2011), Skiathos, Greece, September 8-11, 2011}, series = {{CEUR} Workshop Proceedings}, volume = {1152}, pages = {737--742}, publisher = {CEUR-WS.org}, year = {2011}, url = {https://ceur-ws.org/Vol-1152/paper63.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:27 +0100}, biburl = {https://dblp.org/rec/conf/haicta/DachBPK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hci/RychlikSM11, author = {Michal Rychlik and Witold Stankiewicz and Marek Morzynski}, editor = {Constantine Stephanidis}, title = {Numerical Analysis of Geometrical Features of 3D Biological Objects, for Three-Dimensional Biometric and Anthropometric Database}, booktitle = {Universal Access in Human-Computer Interaction. Users Diversity - 6th International Conference, {UAHCI} 2011, Held as Part of {HCI} International 2011, Orlando, FL, USA, July 9-14, 2011, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {6766}, pages = {108--117}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-21663-3\_12}, doi = {10.1007/978-3-642-21663-3\_12}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/hci/RychlikSM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hic/NguyenSC11, author = {Quang Vinh Nguyen and Simeon J. Simoff and Daniel R. Catchpoole}, editor = {David P. Hansen and Anthony J. Maeder and Louise K. Schaper}, title = {Interactive Visualisation with User Perspective for Biological Data Analysis}, booktitle = {Health Informatics: The Transformative Power of Innovation - Selected Papers from the 19th Australian National Health Informatics Conference, {HIC} 2011, 1-4 August 2011, Brisbane, Australia}, series = {Studies in Health Technology and Informatics}, volume = {168}, pages = {125--132}, publisher = {{IOS} Press}, year = {2011}, url = {https://doi.org/10.3233/978-1-60750-791-8-125}, doi = {10.3233/978-1-60750-791-8-125}, timestamp = {Fri, 26 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/hic/NguyenSC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hvei/NagelLBSU11, author = {Axel Nagel and Marc Lohse and Anthony M. Bolger and Mark Stitt and Bj{\"{o}}rn Usadel}, editor = {Bernice E. Rogowitz and Thrasyvoulos N. Pappas}, title = {Visualizing large, high-throughput datasets based on the cognitive representation of biological pathways}, booktitle = {Human Vision and Electronic Imaging XVI, part of the IS{\&}T-SPIE Electronic Imaging Symposium, San Francisco Airport, California, USA, January 24-27, 2011, Proceedings}, series = {{SPIE} Proceedings}, volume = {7865}, pages = {78650H}, publisher = {SPIE/IS{\&}T}, year = {2011}, url = {https://doi.org/10.1117/12.881998}, doi = {10.1117/12.881998}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/hvei/NagelLBSU11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/MasuyaGTWOKKDKHWTM11, author = {Hiroshi Masuya and Georgios V. Gkoutos and Nobuhiko Tanaka and Kazunori Waki and Yoshihiro Okuda and Tatsuya Kushida and Norio Kobayashi and Koji Doi and Kouji Kozaki and Robert Hoehndorf and Shigeharu Wakana and Tetsuro Toyoda and Riichiro Mizoguchi}, editor = {Olivier Bodenreider and Maryann E. Martone and Alan Ruttenberg}, title = {An Advanced Strategy for Integration of Biological Measurement Data}, booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011}, series = {{CEUR} Workshop Proceedings}, volume = {833}, publisher = {CEUR-WS.org}, year = {2011}, url = {https://ceur-ws.org/Vol-833/paper11.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:24 +0100}, biburl = {https://dblp.org/rec/conf/icbo/MasuyaGTWOKKDKHWTM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/imagapp/RohnKS11, author = {Hendrik Rohn and Christian Klukas and Falk Schreiber}, editor = {Gabriela Csurka and Martin Kraus and Jos{\'{e}} Braz}, title = {Visual Analytics of Multimodal Biological Data}, booktitle = {{IMAGAPP} {\&} {IVAPP} 2011 - Proceedings of the International Conference on Imaging Theory and Applications and International Conference on Information Visualization Theory and Applications, Vilamoura, Algarve, Portugal, March 5-7, 2011}, pages = {256--261}, publisher = {SciTePress}, year = {2011}, timestamp = {Tue, 05 Mar 2024 11:15:19 +0100}, biburl = {https://dblp.org/rec/conf/imagapp/RohnKS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/kes/BoukiYIN11, author = {Yoshihiko Bouki and Takuya Yoshihiro and Etsuko Inoue and Masaru Nakagawa}, editor = {Andreas K{\"{o}}nig and Andreas Dengel and Knut Hinkelmann and Koichi Kise and Robert J. Howlett and Lakhmi C. Jain}, title = {Normalization of Biological Expression Data Based on Selection of a Stable Element Set}, booktitle = {Knowledge-Based and Intelligent Information and Engineering Systems - 15th International Conference, {KES} 2011, Kaiserslautern, Germany, September 12-14, 2011, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {6883}, pages = {153--166}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23854-3\_17}, doi = {10.1007/978-3-642-23854-3\_17}, timestamp = {Fri, 13 Sep 2019 15:47:24 +0200}, biburl = {https://dblp.org/rec/conf/kes/BoukiYIN11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pakdd/YangZZZ11, author = {Pengyi Yang and Zili Zhang and Bing Bing Zhou and Albert Y. Zomaya}, editor = {Joshua Zhexue Huang and Longbing Cao and Jaideep Srivastava}, title = {Sample Subset Optimization for Classifying Imbalanced Biological Data}, booktitle = {Advances in Knowledge Discovery and Data Mining - 15th Pacific-Asia Conference, {PAKDD} 2011, Shenzhen, China, May 24-27, 2011, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {6635}, pages = {333--344}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-20847-8\_28}, doi = {10.1007/978-3-642-20847-8\_28}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/pakdd/YangZZZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/PengL11, author = {Hanchuan Peng and Fuhui Long}, editor = {Vineet Bafna and S{\"{u}}leyman Cenk Sahinalp}, title = {Seeing More Is Knowing More: {V3D} Enables Real-Time 3D Visualization and Quantitative Analysis of Large-Scale Biological Image Data Sets}, booktitle = {Research in Computational Molecular Biology - 15th Annual International Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6577}, pages = {336}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-20036-6\_30}, doi = {10.1007/978-3-642-20036-6\_30}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/PengL11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sebd/AtzeniPT11, author = {Paolo Atzeni and Fabio Polticelli and Daniele Toti}, editor = {Giansalvatore Mecca and Sergio Greco}, title = {Automatic Discovery and Resolution of Protein Abbreviations from Full-Text Scientific Papers: {A} Light-Weight Approach Towards Data Extraction from Unstructured Biological Sources (Extended Abstract)}, booktitle = {Sistemi Evoluti per Basi di Dati - {SEBD} 2011, Proceedings of the Nineteenth Italian Symposium on Advanced Database Systems, Maratea, Italy, June 26-29, 2011}, pages = {318--325}, year = {2011}, timestamp = {Mon, 28 May 2012 10:17:09 +0200}, biburl = {https://dblp.org/rec/conf/sebd/AtzeniPT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/siggrapha/LiBPZSLZL011, author = {Guangxia Li and Andrew Bragdon and Zhigeng Pan and Mingmin Zhang and Sharon M. Swartz and David H. Laidlaw and Chaoyang Zhang and Hanyu Liu and Jian Chen}, editor = {Zhigeng Pan}, title = {VisBubbles: a workflow-driven framework for scientific data analysis of time-varying biological datasets}, booktitle = {{SIGGRAPH} Asia 2011 Posters, Hong Kong, December 12-15, 2011}, pages = {27:1}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2073304.2073333}, doi = {10.1145/2073304.2073333}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/siggrapha/LiBPZSLZL011.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ssdbm/BoulakiaDH11, author = {Sarah Cohen Boulakia and Alain Denise and Sylvie Hamel}, editor = {Judith Bayard Cushing and James C. French and Shawn Bowers}, title = {Using Medians to Generate Consensus Rankings for Biological Data}, booktitle = {Scientific and Statistical Database Management - 23rd International Conference, {SSDBM} 2011, Portland, OR, USA, July 20-22, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6809}, pages = {73--90}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-22351-8\_5}, doi = {10.1007/978-3-642-22351-8\_5}, timestamp = {Mon, 16 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ssdbm/BoulakiaDH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swat4ls/Garcia-GodoyDM11, author = {Mar{\'{\i}}a Jes{\'{u}}s Garc{\'{\i}}a{-}Godoy and Ismael Navas{-}Delgado and Jos{\'{e}} Francisco Aldana Montes}, editor = {Adrian Paschke and Albert Burger and Paolo Romano and M. Scott Marshall and Andrea Splendiani}, title = {Bioqueries: a social community sharing experiences while querying biological linked data}, booktitle = {Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, {SWAT4LS} 2011, London, United Kingdom, December 07-09, 2011}, pages = {24--31}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2166896.2166906}, doi = {10.1145/2166896.2166906}, timestamp = {Wed, 15 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/swat4ls/Garcia-GodoyDM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swat4ls/KobayashiT11, author = {Norio Kobayashi and Tetsuro Toyoda}, editor = {Adrian Paschke and Albert Burger and Paolo Romano and M. Scott Marshall and Andrea Splendiani}, title = {BioSPARQL: ontology-based smart building of {SPARQL} queries for biological linked open data}, booktitle = {Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, {SWAT4LS} 2011, London, United Kingdom, December 07-09, 2011}, pages = {47--49}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2166896.2166912}, doi = {10.1145/2166896.2166912}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/swat4ls/KobayashiT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swat4ls/NishikataT11, author = {Koro Nishikata and Tetsuro Toyoda}, editor = {Adrian Paschke and Albert Burger and Paolo Romano and M. Scott Marshall and Andrea Splendiani}, title = {BioLOD.org: ontology-based integration of biological linked open data}, booktitle = {Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, {SWAT4LS} 2011, London, United Kingdom, December 07-09, 2011}, pages = {92--93}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/2166896.2166919}, doi = {10.1145/2166896.2166919}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/swat4ls/NishikataT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/swis/BellaachiaB11, author = {Abdelghani Bellaachia and Anasse Bari}, title = {{SFLOSCAN:} {A} biologically-inspired data mining framework for community identification in dynamic social networks}, booktitle = {2011 {IEEE} Symposium on Swarm Intelligence, {SIS} 2011, Paris, France, April 12-13, 2011}, pages = {156--163}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/SIS.2011.5952580}, doi = {10.1109/SIS.2011.5952580}, timestamp = {Wed, 16 Oct 2019 14:14:48 +0200}, biburl = {https://dblp.org/rec/conf/swis/BellaachiaB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wea/FrinhaniSMFR11, author = {Rafael M. D. Frinhani and Ricardo M. A. Silva and Geraldo R. Mateus and Paola Festa and Mauricio G. C. Resende}, editor = {Panos M. Pardalos and Steffen Rebennack}, title = {{GRASP} with Path-Relinking for Data Clustering: {A} Case Study for Biological Data}, booktitle = {Experimental Algorithms - 10th International Symposium, {SEA} 2011, Kolimpari, Chania, Crete, Greece, May 5-7, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6630}, pages = {410--420}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-20662-7\_35}, doi = {10.1007/978-3-642-20662-7\_35}, timestamp = {Mon, 05 Feb 2024 20:31:36 +0100}, biburl = {https://dblp.org/rec/conf/wea/FrinhaniSMFR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wims/VenkatesanBASMBMK11, author = {Aravind Venkatesan and Ward Blond{\'{e}} and Erick Antezana and Mats Skillingstad and M. Scott Marshall and Bernard De Baets and Vladimir Mironov and Martin Kuiper}, editor = {Rajendra Akerkar}, title = {The {RDF} foundry: call for an initiative to build enhanced {RDF} resources for biological data integration}, booktitle = {Proceedings of the International Conference on Web Intelligence, Mining and Semantics, {WIMS} 2011, Sogndal, Norway, May 25 - 27, 2011}, pages = {59}, publisher = {{ACM}}, year = {2011}, url = {https://doi.org/10.1145/1988688.1988757}, doi = {10.1145/1988688.1988757}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/wims/VenkatesanBASMBMK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/biovis/2011, editor = {Jessie Kennedy and Jos B. T. M. Roerdink}, title = {2011 {IEEE} Symposium on Biological Data Visualization, BioVis 2011, Providence, RI, USA, October 23-24, 2011}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://ieeexplore.ieee.org/xpl/conhome/6083214/proceeding}, isbn = {978-1-4673-0003-2}, timestamp = {Wed, 16 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/biovis/2011.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:books/daglib/0023942, author = {Mitchell L. Model}, title = {Bioinformatics Programming Using Python - Practical Programming for Biological Data: Covers Python 3}, publisher = {O'Reilly}, year = {2010}, url = {http://www.oreilly.de/catalog/9780596154509/index.html}, isbn = {978-0-596-15450-9}, timestamp = {Wed, 25 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/books/daglib/0023942.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Chen12c, author = {Li Chen}, title = {Integrative Modeling and Analysis of High-throughput Biological Data}, school = {Virginia Tech, Blacksburg, VA, {USA}}, year = {2010}, url = {https://hdl.handle.net/10919/30192}, timestamp = {Wed, 04 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Chen12c.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Dost10, author = {Banu Dost}, title = {Optimization algorithms for biological data}, school = {University of California, San Diego, {USA}}, year = {2010}, url = {http://www.escholarship.org/uc/item/0s47h26s}, timestamp = {Mon, 10 Apr 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Dost10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Kircher10, author = {Amy L. Kircher}, title = {Use of early biological detection data by decision makers to minimize the consequences of no-notice infectious disease outbreaks}, school = {University of North Carolina, Chapel Hill, {USA}}, year = {2010}, url = {https://doi.org/10.17615/7fha-5f98}, doi = {10.17615/7FHA-5F98}, timestamp = {Mon, 02 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Kircher10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Li10c, author = {Yunlei Li}, title = {Exploiting noisy and incomplete biological data for prediction and knowledge discovery}, school = {Delft University of Technology, Netherlands}, year = {2010}, url = {http://resolver.tudelft.nl/uuid:4a35d22c-1a59-49c4-8475-f7a95f9dc849}, timestamp = {Mon, 10 Apr 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/basesearch/Li10c.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/basesearch/Shabalin10, author = {Andrey A. Shabalin}, title = {Detection of Low Rank Signals in Noise and Fast Correlation Mining with Applications to Large Biological Data}, school = {University of North Carolina, Chapel Hill, {USA}}, year = {2010}, url = {https://doi.org/10.17615/bvsk-z309}, doi = {10.17615/BVSK-Z309}, timestamp = {Fri, 20 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/phd/basesearch/Shabalin10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/de/Kormeier2010, author = {Benjamin Kormeier}, title = {Semi-automated reconstruction of biological networks based on a life science data warehouse}, school = {Bielefeld University}, year = {2010}, url = {http://bieson.ub.uni-bielefeld.de/volltexte/2010/1728/index.html}, urn = {urn:nbn:de:hbz:361-17281}, timestamp = {Sat, 17 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/de/Kormeier2010.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/de/Wittkop2010, author = {Tobias Wittkop}, title = {Clustering biological data by unraveling hidden transitive substructures}, school = {Bielefeld University}, year = {2010}, url = {http://bieson.ub.uni-bielefeld.de/volltexte/2010/1614/index.html}, urn = {urn:nbn:de:hbz:361-16145}, timestamp = {Sat, 17 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/de/Wittkop2010.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/it/Fiori10, author = {Alessandro Fiori}, title = {Extraction of biological knowledge by means of data mining techniques}, school = {Polytechnic University of Turin, Italy}, year = {2010}, url = {https://opac.bncf.firenze.sbn.it/bncf-prod/resource?uri=CFI0771903}, timestamp = {Thu, 27 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/it/Fiori10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/us/Spivak10, author = {Marina Spivak}, title = {Analysis of Mass Spectrometry Data for Protein Identification In Complex Biological Mixtures}, school = {New York University, {USA}}, year = {2010}, url = {https://cs.nyu.edu/media/publications/spivak\_marina.pdf}, timestamp = {Mon, 09 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/us/Spivak10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:series/txcs/Revesz10, author = {Peter Z. Revesz}, title = {Introduction to Databases - From Biological to Spatio-Temporal}, series = {Texts in Computer Science}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-1-84996-095-3}, doi = {10.1007/978-1-84996-095-3}, isbn = {978-1-84996-094-6}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/series/txcs/Revesz10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/NuelRMC10, author = {Gr{\'{e}}gory Nuel and Leslie Regad and Juliette Martin and Anne{-}Claude Camproux}, title = {Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data}, journal = {Algorithms Mol. Biol.}, volume = {5}, pages = {15}, year = {2010}, url = {https://doi.org/10.1186/1748-7188-5-15}, doi = {10.1186/1748-7188-5-15}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/almob/NuelRMC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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